Multiple sequence alignment - TraesCS6A01G393700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G393700 chr6A 100.000 3706 0 0 1 3706 607424306 607428011 0.000000e+00 6844.0
1 TraesCS6A01G393700 chr6A 88.571 105 9 2 420 521 438267628 438267732 1.400000e-24 124.0
2 TraesCS6A01G393700 chr6A 97.436 39 1 0 3215 3253 607427487 607427525 2.390000e-07 67.6
3 TraesCS6A01G393700 chr6A 97.436 39 1 0 3182 3220 607427520 607427558 2.390000e-07 67.6
4 TraesCS6A01G393700 chr6D 86.907 2360 169 65 810 3100 460853584 460855872 0.000000e+00 2518.0
5 TraesCS6A01G393700 chr6D 92.188 256 7 5 516 763 460853236 460853486 2.120000e-92 350.0
6 TraesCS6A01G393700 chr6D 82.878 403 32 18 3292 3674 460856128 460856513 9.920000e-86 327.0
7 TraesCS6A01G393700 chr6D 92.701 137 10 0 264 400 271912611 271912475 8.120000e-47 198.0
8 TraesCS6A01G393700 chr6D 91.111 45 3 1 392 435 17107193 17107149 4.000000e-05 60.2
9 TraesCS6A01G393700 chr6B 86.524 2189 140 66 997 3103 702383637 702385752 0.000000e+00 2265.0
10 TraesCS6A01G393700 chr6B 80.645 465 40 22 3255 3672 702385908 702386369 7.730000e-82 315.0
11 TraesCS6A01G393700 chr6B 93.431 137 9 0 264 400 144751790 144751926 1.740000e-48 204.0
12 TraesCS6A01G393700 chr6B 86.842 152 19 1 586 736 702383232 702383383 6.370000e-38 169.0
13 TraesCS6A01G393700 chr6B 91.781 73 5 1 195 267 683946782 683946711 2.360000e-17 100.0
14 TraesCS6A01G393700 chr6B 88.333 60 0 4 509 564 702383175 702383231 8.590000e-07 65.8
15 TraesCS6A01G393700 chr5D 80.894 738 76 36 1611 2315 468041908 468042613 4.240000e-144 521.0
16 TraesCS6A01G393700 chr5D 88.235 391 26 10 2316 2706 468042655 468043025 2.030000e-122 449.0
17 TraesCS6A01G393700 chr5D 94.318 88 5 0 420 507 454398462 454398375 6.460000e-28 135.0
18 TraesCS6A01G393700 chr5D 94.872 39 2 0 2669 2707 564834439 564834401 1.110000e-05 62.1
19 TraesCS6A01G393700 chr7A 79.360 688 68 44 1557 2222 606937334 606937969 2.060000e-112 416.0
20 TraesCS6A01G393700 chr7A 89.103 156 13 4 264 415 430050837 430050682 1.360000e-44 191.0
21 TraesCS6A01G393700 chr7A 93.056 72 4 1 195 266 19313504 19313434 1.820000e-18 104.0
22 TraesCS6A01G393700 chr7A 91.781 73 5 1 195 267 16368541 16368612 2.360000e-17 100.0
23 TraesCS6A01G393700 chr7D 79.330 687 68 45 1557 2222 527463359 527463992 7.410000e-112 414.0
24 TraesCS6A01G393700 chr7D 79.094 684 74 39 1557 2222 527193025 527193657 1.240000e-109 407.0
25 TraesCS6A01G393700 chr7D 79.227 414 43 29 1831 2222 526966960 526967352 7.950000e-62 248.0
26 TraesCS6A01G393700 chr7D 91.216 148 10 2 264 408 117465508 117465361 8.120000e-47 198.0
27 TraesCS6A01G393700 chr7D 94.318 88 5 0 420 507 21093617 21093704 6.460000e-28 135.0
28 TraesCS6A01G393700 chr7D 94.318 88 5 0 420 507 613703775 613703688 6.460000e-28 135.0
29 TraesCS6A01G393700 chr7D 79.688 128 17 8 61 187 230891028 230891147 2.370000e-12 84.2
30 TraesCS6A01G393700 chr7B 77.713 691 86 39 1557 2222 563732677 563733324 9.780000e-96 361.0
31 TraesCS6A01G393700 chr7B 100.000 35 0 0 389 423 578916007 578915973 8.590000e-07 65.8
32 TraesCS6A01G393700 chr5B 91.447 152 13 0 245 396 595288680 595288831 3.750000e-50 209.0
33 TraesCS6A01G393700 chr5B 93.056 72 4 1 195 266 704531421 704531351 1.820000e-18 104.0
34 TraesCS6A01G393700 chr5B 92.958 71 4 1 195 265 6678865 6678934 6.550000e-18 102.0
35 TraesCS6A01G393700 chr5B 95.238 42 1 1 2669 2709 708961321 708961280 8.590000e-07 65.8
36 TraesCS6A01G393700 chr5B 90.909 44 3 1 393 435 520177002 520176959 1.440000e-04 58.4
37 TraesCS6A01G393700 chr4B 90.385 156 15 0 245 400 78026967 78027122 4.850000e-49 206.0
38 TraesCS6A01G393700 chr4B 80.342 117 16 4 79 191 520903819 520903706 8.530000e-12 82.4
39 TraesCS6A01G393700 chr1D 93.431 137 9 0 264 400 311986755 311986619 1.740000e-48 204.0
40 TraesCS6A01G393700 chr1D 94.318 88 5 0 420 507 100826396 100826483 6.460000e-28 135.0
41 TraesCS6A01G393700 chr2D 92.199 141 10 1 264 404 130081676 130081815 8.120000e-47 198.0
42 TraesCS6A01G393700 chr2D 82.576 132 17 4 61 191 87248976 87248850 1.090000e-20 111.0
43 TraesCS6A01G393700 chr2D 91.892 74 5 1 195 268 109737163 109737091 6.550000e-18 102.0
44 TraesCS6A01G393700 chr2D 78.378 148 21 9 58 204 608580844 608580981 6.590000e-13 86.1
45 TraesCS6A01G393700 chr3B 88.050 159 19 0 242 400 754227722 754227564 4.890000e-44 189.0
46 TraesCS6A01G393700 chr3B 91.781 73 5 1 195 267 269086183 269086112 2.360000e-17 100.0
47 TraesCS6A01G393700 chr3B 91.111 45 3 1 392 435 552954448 552954492 4.000000e-05 60.2
48 TraesCS6A01G393700 chr5A 90.179 112 11 0 396 507 597318232 597318343 2.980000e-31 147.0
49 TraesCS6A01G393700 chr5A 83.333 114 16 1 79 192 546203643 546203753 6.550000e-18 102.0
50 TraesCS6A01G393700 chr4A 93.258 89 6 0 419 507 58794237 58794149 8.350000e-27 132.0
51 TraesCS6A01G393700 chr4A 95.349 43 1 1 2669 2710 606346160 606346118 2.390000e-07 67.6
52 TraesCS6A01G393700 chr4A 94.872 39 1 1 390 428 603270133 603270096 4.000000e-05 60.2
53 TraesCS6A01G393700 chr2A 92.391 92 7 0 416 507 628639024 628638933 8.350000e-27 132.0
54 TraesCS6A01G393700 chr2A 85.263 95 9 3 98 192 540777323 540777412 3.940000e-15 93.5
55 TraesCS6A01G393700 chr2A 91.111 45 3 1 392 435 102737861 102737905 4.000000e-05 60.2
56 TraesCS6A01G393700 chr1A 90.625 96 9 0 417 512 145199848 145199943 1.080000e-25 128.0
57 TraesCS6A01G393700 chr4D 94.366 71 3 1 195 265 49788550 49788481 1.410000e-19 108.0
58 TraesCS6A01G393700 chr2B 93.243 74 4 1 195 268 465832673 465832745 1.410000e-19 108.0
59 TraesCS6A01G393700 chr2B 80.303 132 20 4 61 191 139806616 139806490 1.100000e-15 95.3
60 TraesCS6A01G393700 chrUn 81.481 135 16 7 61 195 134300758 134300633 6.550000e-18 102.0
61 TraesCS6A01G393700 chr3D 80.153 131 16 6 61 191 474997831 474997951 5.100000e-14 89.8
62 TraesCS6A01G393700 chr1B 87.879 66 8 0 1451 1516 529679207 529679142 1.100000e-10 78.7
63 TraesCS6A01G393700 chr1B 84.524 84 4 4 1602 1685 529679101 529679027 1.430000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G393700 chr6A 607424306 607428011 3705 False 2326.4 6844 98.290667 1 3706 3 chr6A.!!$F2 3705
1 TraesCS6A01G393700 chr6D 460853236 460856513 3277 False 1065.0 2518 87.324333 516 3674 3 chr6D.!!$F1 3158
2 TraesCS6A01G393700 chr6B 702383175 702386369 3194 False 703.7 2265 85.586000 509 3672 4 chr6B.!!$F2 3163
3 TraesCS6A01G393700 chr5D 468041908 468043025 1117 False 485.0 521 84.564500 1611 2706 2 chr5D.!!$F1 1095
4 TraesCS6A01G393700 chr7A 606937334 606937969 635 False 416.0 416 79.360000 1557 2222 1 chr7A.!!$F2 665
5 TraesCS6A01G393700 chr7D 527463359 527463992 633 False 414.0 414 79.330000 1557 2222 1 chr7D.!!$F5 665
6 TraesCS6A01G393700 chr7D 527193025 527193657 632 False 407.0 407 79.094000 1557 2222 1 chr7D.!!$F4 665
7 TraesCS6A01G393700 chr7B 563732677 563733324 647 False 361.0 361 77.713000 1557 2222 1 chr7B.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 823 0.105039 GAGGCGGTAGATTCCACTGG 59.895 60.0 0.0 0.0 0.00 4.0 F
1122 1247 0.035036 TGTCTCCGTGTCTCGTCTCT 59.965 55.0 0.0 0.0 37.94 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2502 1.000163 GCTGTGTCCGTCTCTTGAAGA 60.000 52.381 0.0 0.0 0.00 2.87 R
2773 3125 0.965439 CCAAATTCAGGTTTCGCCCA 59.035 50.000 0.0 0.0 38.26 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.864589 CGTTACGCCGCCACATTT 59.135 55.556 0.00 0.00 0.00 2.32
58 59 1.208103 CGTTACGCCGCCACATTTT 59.792 52.632 0.00 0.00 0.00 1.82
59 60 1.062873 CGTTACGCCGCCACATTTTG 61.063 55.000 0.00 0.00 0.00 2.44
60 61 0.238817 GTTACGCCGCCACATTTTGA 59.761 50.000 0.00 0.00 0.00 2.69
61 62 0.952280 TTACGCCGCCACATTTTGAA 59.048 45.000 0.00 0.00 0.00 2.69
62 63 0.952280 TACGCCGCCACATTTTGAAA 59.048 45.000 0.00 0.00 0.00 2.69
63 64 0.316841 ACGCCGCCACATTTTGAAAT 59.683 45.000 0.00 0.00 0.00 2.17
64 65 1.542030 ACGCCGCCACATTTTGAAATA 59.458 42.857 0.00 0.00 0.00 1.40
65 66 2.029828 ACGCCGCCACATTTTGAAATAA 60.030 40.909 0.00 0.00 0.00 1.40
66 67 2.989840 CGCCGCCACATTTTGAAATAAA 59.010 40.909 0.00 0.00 0.00 1.40
67 68 3.616379 CGCCGCCACATTTTGAAATAAAT 59.384 39.130 0.00 0.00 0.00 1.40
68 69 4.092675 CGCCGCCACATTTTGAAATAAATT 59.907 37.500 0.00 0.00 0.00 1.82
69 70 5.289675 CGCCGCCACATTTTGAAATAAATTA 59.710 36.000 0.00 0.00 0.00 1.40
70 71 6.507771 CGCCGCCACATTTTGAAATAAATTAG 60.508 38.462 0.00 0.00 0.00 1.73
71 72 6.312672 GCCGCCACATTTTGAAATAAATTAGT 59.687 34.615 0.00 0.00 0.00 2.24
72 73 7.148490 GCCGCCACATTTTGAAATAAATTAGTT 60.148 33.333 0.00 0.00 0.00 2.24
73 74 9.360093 CCGCCACATTTTGAAATAAATTAGTTA 57.640 29.630 0.00 0.00 0.00 2.24
120 121 4.345859 TTTTGTCGATGTCCCTGTTAGT 57.654 40.909 0.00 0.00 0.00 2.24
121 122 5.471556 TTTTGTCGATGTCCCTGTTAGTA 57.528 39.130 0.00 0.00 0.00 1.82
122 123 4.713824 TTGTCGATGTCCCTGTTAGTAG 57.286 45.455 0.00 0.00 0.00 2.57
123 124 3.693807 TGTCGATGTCCCTGTTAGTAGT 58.306 45.455 0.00 0.00 0.00 2.73
124 125 3.442625 TGTCGATGTCCCTGTTAGTAGTG 59.557 47.826 0.00 0.00 0.00 2.74
125 126 3.442977 GTCGATGTCCCTGTTAGTAGTGT 59.557 47.826 0.00 0.00 0.00 3.55
126 127 3.442625 TCGATGTCCCTGTTAGTAGTGTG 59.557 47.826 0.00 0.00 0.00 3.82
127 128 3.428999 CGATGTCCCTGTTAGTAGTGTGG 60.429 52.174 0.00 0.00 0.00 4.17
128 129 2.966915 TGTCCCTGTTAGTAGTGTGGT 58.033 47.619 0.00 0.00 0.00 4.16
129 130 4.116782 TGTCCCTGTTAGTAGTGTGGTA 57.883 45.455 0.00 0.00 0.00 3.25
130 131 4.482030 TGTCCCTGTTAGTAGTGTGGTAA 58.518 43.478 0.00 0.00 0.00 2.85
131 132 4.525487 TGTCCCTGTTAGTAGTGTGGTAAG 59.475 45.833 0.00 0.00 0.00 2.34
132 133 4.525874 GTCCCTGTTAGTAGTGTGGTAAGT 59.474 45.833 0.00 0.00 0.00 2.24
133 134 4.525487 TCCCTGTTAGTAGTGTGGTAAGTG 59.475 45.833 0.00 0.00 0.00 3.16
134 135 4.282703 CCCTGTTAGTAGTGTGGTAAGTGT 59.717 45.833 0.00 0.00 0.00 3.55
135 136 5.227908 CCTGTTAGTAGTGTGGTAAGTGTG 58.772 45.833 0.00 0.00 0.00 3.82
136 137 4.624015 TGTTAGTAGTGTGGTAAGTGTGC 58.376 43.478 0.00 0.00 0.00 4.57
137 138 4.342951 TGTTAGTAGTGTGGTAAGTGTGCT 59.657 41.667 0.00 0.00 0.00 4.40
138 139 5.163385 TGTTAGTAGTGTGGTAAGTGTGCTT 60.163 40.000 0.00 0.00 38.66 3.91
139 140 3.728845 AGTAGTGTGGTAAGTGTGCTTG 58.271 45.455 0.00 0.00 36.22 4.01
140 141 3.386726 AGTAGTGTGGTAAGTGTGCTTGA 59.613 43.478 0.00 0.00 36.22 3.02
141 142 2.561569 AGTGTGGTAAGTGTGCTTGAC 58.438 47.619 0.00 0.00 36.22 3.18
142 143 2.093181 AGTGTGGTAAGTGTGCTTGACA 60.093 45.455 0.00 0.00 36.22 3.58
143 144 2.680841 GTGTGGTAAGTGTGCTTGACAA 59.319 45.455 0.00 0.00 35.91 3.18
144 145 3.315191 GTGTGGTAAGTGTGCTTGACAAT 59.685 43.478 0.00 0.00 35.91 2.71
145 146 3.951037 TGTGGTAAGTGTGCTTGACAATT 59.049 39.130 0.00 0.00 44.78 2.32
146 147 4.400884 TGTGGTAAGTGTGCTTGACAATTT 59.599 37.500 0.00 0.00 39.87 1.82
147 148 5.105554 TGTGGTAAGTGTGCTTGACAATTTT 60.106 36.000 0.00 0.00 39.87 1.82
148 149 5.458779 GTGGTAAGTGTGCTTGACAATTTTC 59.541 40.000 0.00 0.00 39.87 2.29
149 150 5.126222 TGGTAAGTGTGCTTGACAATTTTCA 59.874 36.000 0.00 0.00 39.87 2.69
150 151 6.183360 TGGTAAGTGTGCTTGACAATTTTCAT 60.183 34.615 0.00 0.00 39.87 2.57
151 152 6.144402 GGTAAGTGTGCTTGACAATTTTCATG 59.856 38.462 0.00 0.00 39.87 3.07
152 153 4.053295 AGTGTGCTTGACAATTTTCATGC 58.947 39.130 20.02 20.02 43.59 4.06
153 154 3.184986 GTGTGCTTGACAATTTTCATGCC 59.815 43.478 22.49 16.33 42.98 4.40
154 155 3.181468 TGTGCTTGACAATTTTCATGCCA 60.181 39.130 22.49 18.00 42.98 4.92
155 156 3.998341 GTGCTTGACAATTTTCATGCCAT 59.002 39.130 22.49 0.00 42.98 4.40
156 157 5.170021 GTGCTTGACAATTTTCATGCCATA 58.830 37.500 22.49 7.95 42.98 2.74
157 158 5.813672 GTGCTTGACAATTTTCATGCCATAT 59.186 36.000 22.49 0.00 42.98 1.78
158 159 5.813157 TGCTTGACAATTTTCATGCCATATG 59.187 36.000 22.49 0.00 42.98 1.78
159 160 5.277154 GCTTGACAATTTTCATGCCATATGC 60.277 40.000 17.37 0.00 39.58 3.14
160 161 4.361420 TGACAATTTTCATGCCATATGCG 58.639 39.130 0.00 0.00 45.60 4.73
161 162 4.097589 TGACAATTTTCATGCCATATGCGA 59.902 37.500 0.00 0.00 45.60 5.10
162 163 5.204409 ACAATTTTCATGCCATATGCGAT 57.796 34.783 0.00 0.00 45.60 4.58
163 164 6.016443 TGACAATTTTCATGCCATATGCGATA 60.016 34.615 0.00 0.00 45.60 2.92
164 165 6.384224 ACAATTTTCATGCCATATGCGATAG 58.616 36.000 0.00 0.00 45.60 2.08
165 166 5.571784 ATTTTCATGCCATATGCGATAGG 57.428 39.130 0.00 0.00 45.60 2.57
166 167 3.979101 TTCATGCCATATGCGATAGGA 57.021 42.857 0.00 0.00 45.60 2.94
167 168 3.531934 TCATGCCATATGCGATAGGAG 57.468 47.619 0.00 0.00 45.60 3.69
168 169 2.833943 TCATGCCATATGCGATAGGAGT 59.166 45.455 0.00 0.00 45.60 3.85
169 170 2.749280 TGCCATATGCGATAGGAGTG 57.251 50.000 0.00 0.00 45.60 3.51
170 171 1.338105 TGCCATATGCGATAGGAGTGC 60.338 52.381 0.00 0.00 45.60 4.40
171 172 1.066573 GCCATATGCGATAGGAGTGCT 60.067 52.381 0.00 0.00 42.54 4.40
172 173 2.613977 GCCATATGCGATAGGAGTGCTT 60.614 50.000 0.00 0.00 42.54 3.91
173 174 3.668447 CCATATGCGATAGGAGTGCTTT 58.332 45.455 0.00 0.00 42.54 3.51
174 175 3.434641 CCATATGCGATAGGAGTGCTTTG 59.565 47.826 0.00 0.00 42.54 2.77
175 176 2.698855 ATGCGATAGGAGTGCTTTGT 57.301 45.000 0.00 0.00 42.54 2.83
176 177 2.010145 TGCGATAGGAGTGCTTTGTC 57.990 50.000 0.00 0.00 0.00 3.18
177 178 1.275010 TGCGATAGGAGTGCTTTGTCA 59.725 47.619 0.00 0.00 0.00 3.58
178 179 1.929836 GCGATAGGAGTGCTTTGTCAG 59.070 52.381 0.00 0.00 0.00 3.51
179 180 2.675317 GCGATAGGAGTGCTTTGTCAGT 60.675 50.000 0.00 0.00 0.00 3.41
180 181 2.926200 CGATAGGAGTGCTTTGTCAGTG 59.074 50.000 0.00 0.00 0.00 3.66
181 182 3.615110 CGATAGGAGTGCTTTGTCAGTGT 60.615 47.826 0.00 0.00 0.00 3.55
182 183 4.380550 CGATAGGAGTGCTTTGTCAGTGTA 60.381 45.833 0.00 0.00 0.00 2.90
183 184 3.838244 AGGAGTGCTTTGTCAGTGTAA 57.162 42.857 0.00 0.00 0.00 2.41
184 185 4.150897 AGGAGTGCTTTGTCAGTGTAAA 57.849 40.909 0.00 0.00 0.00 2.01
185 186 4.523083 AGGAGTGCTTTGTCAGTGTAAAA 58.477 39.130 0.00 0.00 0.00 1.52
186 187 4.947388 AGGAGTGCTTTGTCAGTGTAAAAA 59.053 37.500 0.00 0.00 0.00 1.94
187 188 5.034797 GGAGTGCTTTGTCAGTGTAAAAAC 58.965 41.667 0.00 0.00 0.00 2.43
188 189 5.392595 GGAGTGCTTTGTCAGTGTAAAAACA 60.393 40.000 0.00 0.00 0.00 2.83
189 190 6.019779 AGTGCTTTGTCAGTGTAAAAACAA 57.980 33.333 0.00 0.00 0.00 2.83
190 191 6.451393 AGTGCTTTGTCAGTGTAAAAACAAA 58.549 32.000 6.83 6.83 38.80 2.83
191 192 7.096551 AGTGCTTTGTCAGTGTAAAAACAAAT 58.903 30.769 7.33 0.00 39.92 2.32
192 193 7.275560 AGTGCTTTGTCAGTGTAAAAACAAATC 59.724 33.333 7.33 4.96 39.92 2.17
193 194 7.062839 GTGCTTTGTCAGTGTAAAAACAAATCA 59.937 33.333 7.33 7.03 39.92 2.57
194 195 7.600375 TGCTTTGTCAGTGTAAAAACAAATCAA 59.400 29.630 7.33 0.00 39.92 2.57
195 196 8.603181 GCTTTGTCAGTGTAAAAACAAATCAAT 58.397 29.630 7.33 0.00 39.92 2.57
257 258 9.819267 AAAAACGTTTTTATATTTTGGGACAGA 57.181 25.926 31.82 0.00 37.97 3.41
258 259 9.471084 AAAACGTTTTTATATTTTGGGACAGAG 57.529 29.630 20.26 0.00 42.39 3.35
259 260 7.153217 ACGTTTTTATATTTTGGGACAGAGG 57.847 36.000 0.00 0.00 42.39 3.69
260 261 6.152154 ACGTTTTTATATTTTGGGACAGAGGG 59.848 38.462 0.00 0.00 42.39 4.30
261 262 6.152154 CGTTTTTATATTTTGGGACAGAGGGT 59.848 38.462 0.00 0.00 42.39 4.34
262 263 7.320399 GTTTTTATATTTTGGGACAGAGGGTG 58.680 38.462 0.00 0.00 42.39 4.61
263 264 5.789574 TTATATTTTGGGACAGAGGGTGT 57.210 39.130 0.00 0.00 44.49 4.16
264 265 6.894735 TTATATTTTGGGACAGAGGGTGTA 57.105 37.500 0.00 0.00 40.56 2.90
265 266 5.994416 ATATTTTGGGACAGAGGGTGTAT 57.006 39.130 0.00 0.00 40.56 2.29
266 267 8.570038 TTATATTTTGGGACAGAGGGTGTATA 57.430 34.615 0.00 0.00 40.56 1.47
267 268 5.789574 ATTTTGGGACAGAGGGTGTATAA 57.210 39.130 0.00 0.00 40.56 0.98
268 269 4.837093 TTTGGGACAGAGGGTGTATAAG 57.163 45.455 0.00 0.00 40.56 1.73
269 270 3.484953 TGGGACAGAGGGTGTATAAGT 57.515 47.619 0.00 0.00 40.56 2.24
270 271 3.798515 TGGGACAGAGGGTGTATAAGTT 58.201 45.455 0.00 0.00 40.56 2.66
271 272 4.172807 TGGGACAGAGGGTGTATAAGTTT 58.827 43.478 0.00 0.00 40.56 2.66
272 273 4.600111 TGGGACAGAGGGTGTATAAGTTTT 59.400 41.667 0.00 0.00 40.56 2.43
273 274 5.073965 TGGGACAGAGGGTGTATAAGTTTTT 59.926 40.000 0.00 0.00 40.56 1.94
274 275 5.414765 GGGACAGAGGGTGTATAAGTTTTTG 59.585 44.000 0.00 0.00 40.56 2.44
275 276 6.002082 GGACAGAGGGTGTATAAGTTTTTGT 58.998 40.000 0.00 0.00 40.56 2.83
276 277 7.163441 GGACAGAGGGTGTATAAGTTTTTGTA 58.837 38.462 0.00 0.00 40.56 2.41
277 278 7.333672 GGACAGAGGGTGTATAAGTTTTTGTAG 59.666 40.741 0.00 0.00 40.56 2.74
278 279 7.970102 ACAGAGGGTGTATAAGTTTTTGTAGA 58.030 34.615 0.00 0.00 37.75 2.59
279 280 8.095169 ACAGAGGGTGTATAAGTTTTTGTAGAG 58.905 37.037 0.00 0.00 37.75 2.43
280 281 8.311836 CAGAGGGTGTATAAGTTTTTGTAGAGA 58.688 37.037 0.00 0.00 0.00 3.10
281 282 9.047947 AGAGGGTGTATAAGTTTTTGTAGAGAT 57.952 33.333 0.00 0.00 0.00 2.75
282 283 9.668497 GAGGGTGTATAAGTTTTTGTAGAGATT 57.332 33.333 0.00 0.00 0.00 2.40
296 297 9.750783 TTTTGTAGAGATTACACTAGGTAGACT 57.249 33.333 0.00 0.00 32.49 3.24
298 299 9.829507 TTGTAGAGATTACACTAGGTAGACTAC 57.170 37.037 3.86 3.86 32.49 2.73
299 300 8.985922 TGTAGAGATTACACTAGGTAGACTACA 58.014 37.037 14.48 0.00 35.41 2.74
307 308 7.513371 ACACTAGGTAGACTACATATGAAGC 57.487 40.000 10.38 0.00 0.00 3.86
308 309 7.061054 ACACTAGGTAGACTACATATGAAGCA 58.939 38.462 10.38 0.00 0.00 3.91
309 310 7.560262 ACACTAGGTAGACTACATATGAAGCAA 59.440 37.037 10.38 0.00 0.00 3.91
310 311 8.414003 CACTAGGTAGACTACATATGAAGCAAA 58.586 37.037 10.38 0.00 0.00 3.68
311 312 8.978472 ACTAGGTAGACTACATATGAAGCAAAA 58.022 33.333 10.38 0.00 0.00 2.44
312 313 9.988815 CTAGGTAGACTACATATGAAGCAAAAT 57.011 33.333 10.38 0.00 0.00 1.82
313 314 8.668510 AGGTAGACTACATATGAAGCAAAATG 57.331 34.615 10.38 0.00 0.00 2.32
314 315 8.486210 AGGTAGACTACATATGAAGCAAAATGA 58.514 33.333 10.38 0.00 0.00 2.57
315 316 9.109393 GGTAGACTACATATGAAGCAAAATGAA 57.891 33.333 10.38 0.00 0.00 2.57
318 319 9.399797 AGACTACATATGAAGCAAAATGAATGA 57.600 29.630 10.38 0.00 0.00 2.57
326 327 8.922058 ATGAAGCAAAATGAATGAATCTACAC 57.078 30.769 0.00 0.00 0.00 2.90
327 328 8.114331 TGAAGCAAAATGAATGAATCTACACT 57.886 30.769 0.00 0.00 0.00 3.55
328 329 8.579006 TGAAGCAAAATGAATGAATCTACACTT 58.421 29.630 0.00 0.00 0.00 3.16
351 352 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
355 356 8.893219 AAATGCATCTATATACATCCGTATGG 57.107 34.615 0.00 0.00 38.79 2.74
356 357 6.405278 TGCATCTATATACATCCGTATGGG 57.595 41.667 0.00 0.00 38.79 4.00
357 358 5.304357 TGCATCTATATACATCCGTATGGGG 59.696 44.000 0.00 0.00 38.79 4.96
358 359 5.304614 GCATCTATATACATCCGTATGGGGT 59.695 44.000 0.00 2.88 38.79 4.95
359 360 6.183360 GCATCTATATACATCCGTATGGGGTT 60.183 42.308 0.00 0.00 38.79 4.11
360 361 7.434492 CATCTATATACATCCGTATGGGGTTC 58.566 42.308 0.00 0.00 38.79 3.62
361 362 6.495847 TCTATATACATCCGTATGGGGTTCA 58.504 40.000 0.00 0.00 38.79 3.18
362 363 7.130099 TCTATATACATCCGTATGGGGTTCAT 58.870 38.462 0.00 0.86 38.79 2.57
363 364 8.283708 TCTATATACATCCGTATGGGGTTCATA 58.716 37.037 0.00 0.00 38.79 2.15
364 365 7.743116 ATATACATCCGTATGGGGTTCATAA 57.257 36.000 0.00 0.00 39.78 1.90
365 366 4.993705 ACATCCGTATGGGGTTCATAAT 57.006 40.909 0.00 0.00 39.78 1.28
366 367 7.743116 ATACATCCGTATGGGGTTCATAATA 57.257 36.000 0.00 0.00 39.78 0.98
367 368 6.442541 ACATCCGTATGGGGTTCATAATAA 57.557 37.500 0.00 0.00 39.78 1.40
368 369 6.843752 ACATCCGTATGGGGTTCATAATAAA 58.156 36.000 0.00 0.00 39.78 1.40
369 370 7.291566 ACATCCGTATGGGGTTCATAATAAAA 58.708 34.615 0.00 0.00 39.78 1.52
370 371 7.947890 ACATCCGTATGGGGTTCATAATAAAAT 59.052 33.333 0.00 0.00 39.78 1.82
371 372 7.989416 TCCGTATGGGGTTCATAATAAAATC 57.011 36.000 0.00 0.00 39.78 2.17
372 373 7.751646 TCCGTATGGGGTTCATAATAAAATCT 58.248 34.615 0.00 0.00 39.78 2.40
373 374 7.881232 TCCGTATGGGGTTCATAATAAAATCTC 59.119 37.037 0.00 0.00 39.78 2.75
374 375 7.883311 CCGTATGGGGTTCATAATAAAATCTCT 59.117 37.037 0.00 0.00 39.78 3.10
375 376 9.938280 CGTATGGGGTTCATAATAAAATCTCTA 57.062 33.333 0.00 0.00 39.78 2.43
379 380 9.983024 TGGGGTTCATAATAAAATCTCTACAAA 57.017 29.630 0.00 0.00 0.00 2.83
439 440 9.878599 ATTTTAGTTCCGAATTATTTATCGCAG 57.121 29.630 0.00 0.00 37.73 5.18
440 441 5.924475 AGTTCCGAATTATTTATCGCAGG 57.076 39.130 0.00 0.00 37.73 4.85
441 442 5.365619 AGTTCCGAATTATTTATCGCAGGT 58.634 37.500 0.00 0.00 37.73 4.00
442 443 6.518493 AGTTCCGAATTATTTATCGCAGGTA 58.482 36.000 0.00 0.00 37.73 3.08
443 444 7.159372 AGTTCCGAATTATTTATCGCAGGTAT 58.841 34.615 0.00 0.00 37.73 2.73
444 445 6.961359 TCCGAATTATTTATCGCAGGTATG 57.039 37.500 0.00 0.00 37.73 2.39
445 446 6.693466 TCCGAATTATTTATCGCAGGTATGA 58.307 36.000 0.00 0.00 37.73 2.15
446 447 7.156000 TCCGAATTATTTATCGCAGGTATGAA 58.844 34.615 0.00 0.00 37.73 2.57
447 448 7.822334 TCCGAATTATTTATCGCAGGTATGAAT 59.178 33.333 0.00 0.00 37.73 2.57
448 449 7.904977 CCGAATTATTTATCGCAGGTATGAATG 59.095 37.037 0.00 0.00 37.73 2.67
449 450 8.443160 CGAATTATTTATCGCAGGTATGAATGT 58.557 33.333 0.00 0.00 31.71 2.71
455 456 9.809096 ATTTATCGCAGGTATGAATGTATCTAG 57.191 33.333 0.00 0.00 0.00 2.43
456 457 8.575649 TTATCGCAGGTATGAATGTATCTAGA 57.424 34.615 0.00 0.00 0.00 2.43
457 458 7.652524 ATCGCAGGTATGAATGTATCTAGAT 57.347 36.000 10.73 10.73 0.00 1.98
458 459 6.856895 TCGCAGGTATGAATGTATCTAGATG 58.143 40.000 15.79 0.00 0.00 2.90
459 460 6.434340 TCGCAGGTATGAATGTATCTAGATGT 59.566 38.462 15.79 0.00 0.00 3.06
460 461 7.610305 TCGCAGGTATGAATGTATCTAGATGTA 59.390 37.037 15.79 4.44 0.00 2.29
461 462 8.409371 CGCAGGTATGAATGTATCTAGATGTAT 58.591 37.037 15.79 6.61 0.00 2.29
489 490 9.781834 TTAGTTTTAGATACATCCATTTTTGCG 57.218 29.630 0.00 0.00 0.00 4.85
490 491 8.050778 AGTTTTAGATACATCCATTTTTGCGA 57.949 30.769 0.00 0.00 0.00 5.10
491 492 7.968405 AGTTTTAGATACATCCATTTTTGCGAC 59.032 33.333 0.00 0.00 0.00 5.19
492 493 4.536364 AGATACATCCATTTTTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
493 494 4.188462 AGATACATCCATTTTTGCGACGA 58.812 39.130 0.00 0.00 0.00 4.20
494 495 4.634004 AGATACATCCATTTTTGCGACGAA 59.366 37.500 0.00 0.00 0.00 3.85
495 496 3.848272 ACATCCATTTTTGCGACGAAT 57.152 38.095 0.00 0.00 0.00 3.34
496 497 4.955925 ACATCCATTTTTGCGACGAATA 57.044 36.364 0.00 0.00 0.00 1.75
497 498 5.303747 ACATCCATTTTTGCGACGAATAA 57.696 34.783 0.00 0.00 0.00 1.40
498 499 5.890334 ACATCCATTTTTGCGACGAATAAT 58.110 33.333 0.00 0.00 0.00 1.28
499 500 6.329496 ACATCCATTTTTGCGACGAATAATT 58.671 32.000 0.00 0.00 0.00 1.40
500 501 6.811170 ACATCCATTTTTGCGACGAATAATTT 59.189 30.769 0.00 0.00 0.00 1.82
501 502 6.624710 TCCATTTTTGCGACGAATAATTTG 57.375 33.333 0.00 0.00 0.00 2.32
502 503 6.382608 TCCATTTTTGCGACGAATAATTTGA 58.617 32.000 0.00 0.00 0.00 2.69
503 504 6.863645 TCCATTTTTGCGACGAATAATTTGAA 59.136 30.769 0.00 0.00 0.00 2.69
504 505 7.382488 TCCATTTTTGCGACGAATAATTTGAAA 59.618 29.630 0.00 0.00 0.00 2.69
505 506 7.474025 CCATTTTTGCGACGAATAATTTGAAAC 59.526 33.333 0.00 0.00 0.00 2.78
506 507 5.717000 TTTGCGACGAATAATTTGAAACG 57.283 34.783 0.00 0.00 0.00 3.60
507 508 4.392619 TGCGACGAATAATTTGAAACGT 57.607 36.364 0.00 0.00 36.71 3.99
508 509 4.145276 TGCGACGAATAATTTGAAACGTG 58.855 39.130 0.00 0.00 34.26 4.49
509 510 3.536837 GCGACGAATAATTTGAAACGTGG 59.463 43.478 0.00 0.00 34.26 4.94
510 511 4.085884 CGACGAATAATTTGAAACGTGGG 58.914 43.478 0.00 0.00 34.26 4.61
511 512 4.143073 CGACGAATAATTTGAAACGTGGGA 60.143 41.667 0.00 0.00 34.26 4.37
512 513 5.038247 ACGAATAATTTGAAACGTGGGAC 57.962 39.130 0.00 0.00 32.93 4.46
514 515 4.143073 CGAATAATTTGAAACGTGGGACGA 60.143 41.667 2.62 0.00 46.05 4.20
519 520 0.389757 TGAAACGTGGGACGACATCA 59.610 50.000 2.62 1.82 46.05 3.07
750 766 2.522193 GGCCGGTGGGGTCAAAAA 60.522 61.111 1.90 0.00 41.38 1.94
752 768 2.570284 GCCGGTGGGGTCAAAAAGG 61.570 63.158 1.90 0.00 38.44 3.11
753 769 1.151908 CCGGTGGGGTCAAAAAGGA 59.848 57.895 0.00 0.00 0.00 3.36
771 823 0.105039 GAGGCGGTAGATTCCACTGG 59.895 60.000 0.00 0.00 0.00 4.00
772 824 1.523938 GGCGGTAGATTCCACTGGC 60.524 63.158 2.09 2.09 40.17 4.85
773 825 1.220749 GCGGTAGATTCCACTGGCA 59.779 57.895 0.00 0.00 0.00 4.92
774 826 0.179045 GCGGTAGATTCCACTGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
775 827 1.747206 GCGGTAGATTCCACTGGCATT 60.747 52.381 0.00 0.00 0.00 3.56
792 844 2.216046 CATTCCACCGGTGATCTGATG 58.784 52.381 36.07 23.60 0.00 3.07
814 866 1.592400 TACGAACAGACGGCAGGAGG 61.592 60.000 0.00 0.00 37.61 4.30
815 867 2.636412 CGAACAGACGGCAGGAGGA 61.636 63.158 0.00 0.00 0.00 3.71
816 868 1.901085 GAACAGACGGCAGGAGGAT 59.099 57.895 0.00 0.00 0.00 3.24
844 919 2.183555 CCTCGGGCGAGTTGGTAC 59.816 66.667 0.00 0.00 40.44 3.34
913 988 2.863988 CCAACCCAACCCCTCCCT 60.864 66.667 0.00 0.00 0.00 4.20
920 995 4.040198 AACCCCTCCCTCCCCTCC 62.040 72.222 0.00 0.00 0.00 4.30
956 1031 0.392327 GCAGAGCAGGAAGGTTCTCC 60.392 60.000 0.00 0.00 35.51 3.71
961 1036 0.537188 GCAGGAAGGTTCTCCATCGA 59.463 55.000 0.00 0.00 38.02 3.59
962 1037 1.139853 GCAGGAAGGTTCTCCATCGAT 59.860 52.381 0.00 0.00 38.02 3.59
963 1038 2.804933 GCAGGAAGGTTCTCCATCGATC 60.805 54.545 0.00 0.00 38.02 3.69
965 1040 1.269831 GGAAGGTTCTCCATCGATCGG 60.270 57.143 16.41 0.85 35.36 4.18
966 1041 1.681793 GAAGGTTCTCCATCGATCGGA 59.318 52.381 16.41 13.64 35.89 4.55
971 1046 2.262183 CTCCATCGATCGGAGGAGG 58.738 63.158 31.88 20.38 45.43 4.30
972 1047 1.228583 TCCATCGATCGGAGGAGGG 60.229 63.158 20.65 11.25 35.51 4.30
973 1048 2.653702 CATCGATCGGAGGAGGGC 59.346 66.667 16.41 0.00 0.00 5.19
974 1049 2.601966 ATCGATCGGAGGAGGGCC 60.602 66.667 16.41 0.00 0.00 5.80
1017 1117 0.250793 CCATGGGCAAGGTACGTACA 59.749 55.000 26.02 5.17 0.00 2.90
1018 1118 1.134220 CCATGGGCAAGGTACGTACAT 60.134 52.381 26.02 17.76 0.00 2.29
1021 1121 0.107848 GGGCAAGGTACGTACATGCT 60.108 55.000 34.64 20.57 39.22 3.79
1023 1123 1.396996 GGCAAGGTACGTACATGCTTG 59.603 52.381 34.64 30.47 39.22 4.01
1030 1130 0.394938 ACGTACATGCTTGACCACCA 59.605 50.000 6.60 0.00 0.00 4.17
1036 1136 1.768684 ATGCTTGACCACCACCTCGT 61.769 55.000 0.00 0.00 0.00 4.18
1039 1164 1.802337 CTTGACCACCACCTCGTCGA 61.802 60.000 0.00 0.00 0.00 4.20
1055 1180 2.419198 GACGCCCATCTGCTCGAT 59.581 61.111 0.00 0.00 0.00 3.59
1098 1223 4.735132 TTTCCGCCGCTCTGACCG 62.735 66.667 0.00 0.00 0.00 4.79
1122 1247 0.035036 TGTCTCCGTGTCTCGTCTCT 59.965 55.000 0.00 0.00 37.94 3.10
1125 1250 1.005275 TCCGTGTCTCGTCTCTCGT 60.005 57.895 0.00 0.00 40.80 4.18
1126 1251 1.013005 TCCGTGTCTCGTCTCTCGTC 61.013 60.000 0.00 0.00 40.80 4.20
1127 1252 1.015085 CCGTGTCTCGTCTCTCGTCT 61.015 60.000 0.00 0.00 40.80 4.18
1128 1253 0.367548 CGTGTCTCGTCTCTCGTCTC 59.632 60.000 0.00 0.00 40.80 3.36
1129 1254 0.367548 GTGTCTCGTCTCTCGTCTCG 59.632 60.000 0.00 0.00 40.80 4.04
1130 1255 1.345856 GTCTCGTCTCTCGTCTCGC 59.654 63.158 0.00 0.00 40.80 5.03
1183 1314 3.948719 GGTGGTGGTGGAGGCGAA 61.949 66.667 0.00 0.00 0.00 4.70
1195 1326 2.042843 GGCGAAGGAGGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1196 1327 1.458588 GGCGAAGGAGGAGGAGGAT 60.459 63.158 0.00 0.00 0.00 3.24
1197 1328 1.745264 GCGAAGGAGGAGGAGGATG 59.255 63.158 0.00 0.00 0.00 3.51
1303 1434 3.056328 GACAAGGACAAGGGCGGC 61.056 66.667 0.00 0.00 0.00 6.53
1342 1485 1.671379 GGCGGACAAGGACAAGGAC 60.671 63.158 0.00 0.00 0.00 3.85
1500 1652 2.494918 CCGCTTCCCAGGTACGAG 59.505 66.667 0.00 0.00 0.00 4.18
1519 1676 1.460273 GCACGATCCTCTCCTCTCCC 61.460 65.000 0.00 0.00 0.00 4.30
1534 1691 3.374402 CCCCTCTCTGTCACGCGT 61.374 66.667 5.58 5.58 0.00 6.01
1563 1720 2.246397 CGCGTGCACTGTTCTGTG 59.754 61.111 16.19 0.47 40.62 3.66
1607 1765 6.982724 GCATGATTTCTCCCTTAATTTTCTGG 59.017 38.462 0.00 0.00 0.00 3.86
1628 1792 4.781616 TGATCGGCCCGGTGGGTA 62.782 66.667 1.90 0.00 46.51 3.69
1629 1793 3.472726 GATCGGCCCGGTGGGTAA 61.473 66.667 1.90 0.00 46.51 2.85
1630 1794 3.745240 GATCGGCCCGGTGGGTAAC 62.745 68.421 1.90 0.00 46.51 2.50
1641 1805 2.048503 GGGTAACTGCGCGTGTCT 60.049 61.111 8.43 1.77 0.00 3.41
1642 1806 2.380410 GGGTAACTGCGCGTGTCTG 61.380 63.158 8.43 0.00 0.00 3.51
1643 1807 1.663702 GGTAACTGCGCGTGTCTGT 60.664 57.895 8.43 0.00 0.00 3.41
1644 1808 1.615107 GGTAACTGCGCGTGTCTGTC 61.615 60.000 8.43 0.00 0.00 3.51
1645 1809 1.728074 TAACTGCGCGTGTCTGTCG 60.728 57.895 8.43 0.00 0.00 4.35
1689 1853 1.379044 CATGGAGGTGGACAAGGGC 60.379 63.158 0.00 0.00 0.00 5.19
1730 1895 2.032528 CGACCCCAAGAAGCTGCA 59.967 61.111 1.02 0.00 0.00 4.41
1733 1898 3.066814 CCCCAAGAAGCTGCAGGC 61.067 66.667 17.12 7.98 42.19 4.85
1788 1954 2.746277 GTCGGCGGCAAGGACAAT 60.746 61.111 6.63 0.00 0.00 2.71
1797 1993 0.393808 GCAAGGACAATAAGGGCGGA 60.394 55.000 0.00 0.00 0.00 5.54
1826 2022 1.966451 GGGACAAGGACAAGTGCGG 60.966 63.158 0.00 0.00 0.00 5.69
1959 2181 1.322442 GCAAGGACAACAAGAAGCCT 58.678 50.000 0.00 0.00 0.00 4.58
2013 2270 3.826157 TCCTTCTTGCCACTTTGTAATGG 59.174 43.478 0.00 0.00 39.16 3.16
2014 2271 3.573967 CCTTCTTGCCACTTTGTAATGGT 59.426 43.478 0.00 0.00 38.34 3.55
2034 2291 3.369147 GGTATGCGTATGCTGATGATGAC 59.631 47.826 8.69 0.00 43.34 3.06
2053 2310 1.001293 ACATTGCTCTGCTCGACTGAA 59.999 47.619 0.00 0.00 0.00 3.02
2055 2312 2.462456 TTGCTCTGCTCGACTGAATT 57.538 45.000 0.00 0.00 0.00 2.17
2066 2323 4.177026 CTCGACTGAATTCTCGATTTGGT 58.823 43.478 17.12 0.71 38.22 3.67
2184 2449 0.037697 AGATCAAAGGTACGCACGCA 60.038 50.000 0.00 0.00 0.00 5.24
2186 2451 0.320421 ATCAAAGGTACGCACGCACT 60.320 50.000 0.00 0.00 0.00 4.40
2249 2520 3.812156 TTTCTTCAAGAGACGGACACA 57.188 42.857 0.00 0.00 33.02 3.72
2298 2573 2.173669 CCCTGTACCTGCGCATTCG 61.174 63.158 12.24 3.81 39.07 3.34
2322 2643 2.407428 CCGAGCACGCAGACCTCTA 61.407 63.158 0.00 0.00 38.29 2.43
2327 2648 1.009829 GCACGCAGACCTCTAATTGG 58.990 55.000 0.00 0.00 0.00 3.16
2329 2650 1.207089 CACGCAGACCTCTAATTGGGA 59.793 52.381 0.00 0.00 0.00 4.37
2530 2857 2.626780 GCAACAAGGACGGGAAGCC 61.627 63.158 0.00 0.00 0.00 4.35
2707 3037 2.433145 CTGCGCCGTCATGTGAGT 60.433 61.111 4.18 0.00 0.00 3.41
2712 3045 1.741770 GCCGTCATGTGAGTGACCC 60.742 63.158 0.00 0.00 44.37 4.46
2714 3047 0.108615 CCGTCATGTGAGTGACCCTC 60.109 60.000 0.00 0.00 44.37 4.30
2716 3049 0.108615 GTCATGTGAGTGACCCTCGG 60.109 60.000 0.00 0.00 43.64 4.63
2769 3117 9.817809 GACAGACAGATAGTAGATAGATAGGAG 57.182 40.741 0.00 0.00 0.00 3.69
2773 3125 9.969001 GACAGATAGTAGATAGATAGGAGGTTT 57.031 37.037 0.00 0.00 0.00 3.27
2777 3129 5.088026 AGTAGATAGATAGGAGGTTTGGGC 58.912 45.833 0.00 0.00 0.00 5.36
2807 3159 0.899720 TTTGGTACAGGCTACCGGAG 59.100 55.000 9.46 1.84 42.39 4.63
2817 3169 1.159098 GCTACCGGAGAGATCGACGT 61.159 60.000 9.46 0.00 0.00 4.34
2842 3194 5.995282 AGAATTCAGTCGTTGGTTCATTACA 59.005 36.000 8.44 0.00 0.00 2.41
2846 3198 5.060506 TCAGTCGTTGGTTCATTACAATGT 58.939 37.500 2.08 0.00 37.65 2.71
2867 3221 0.544120 TTTTTGGGTGGGATGGGAGC 60.544 55.000 0.00 0.00 0.00 4.70
2894 3253 3.253188 TGTGCATGCAAGTTCTTCTTACC 59.747 43.478 24.58 5.50 34.66 2.85
2943 3306 2.380941 TGATGATGGCTTGTTGATGGG 58.619 47.619 0.00 0.00 0.00 4.00
2989 3352 1.243902 TCGATTTTGGGGTGAACTGC 58.756 50.000 0.00 0.00 0.00 4.40
2990 3353 1.202879 TCGATTTTGGGGTGAACTGCT 60.203 47.619 0.00 0.00 0.00 4.24
2991 3354 1.068333 CGATTTTGGGGTGAACTGCTG 60.068 52.381 0.00 0.00 0.00 4.41
2992 3355 2.238521 GATTTTGGGGTGAACTGCTGA 58.761 47.619 0.00 0.00 0.00 4.26
2993 3356 2.151502 TTTTGGGGTGAACTGCTGAA 57.848 45.000 0.00 0.00 0.00 3.02
2994 3357 1.691196 TTTGGGGTGAACTGCTGAAG 58.309 50.000 0.00 0.00 0.00 3.02
2995 3358 0.823356 TTGGGGTGAACTGCTGAAGC 60.823 55.000 0.00 0.00 42.50 3.86
3019 3382 6.541086 CATGTAGATGTTCTGAAGTTCTTGC 58.459 40.000 4.17 3.56 0.00 4.01
3047 3417 3.558931 TGTGATGTGATGGATGGTACC 57.441 47.619 4.43 4.43 0.00 3.34
3048 3418 2.158971 TGTGATGTGATGGATGGTACCG 60.159 50.000 7.57 0.00 0.00 4.02
3055 3425 3.436704 GTGATGGATGGTACCGCATTATG 59.563 47.826 7.57 0.00 0.00 1.90
3058 3428 3.937814 TGGATGGTACCGCATTATGATC 58.062 45.455 7.57 1.74 0.00 2.92
3059 3429 3.270877 GGATGGTACCGCATTATGATCC 58.729 50.000 7.57 7.60 0.00 3.36
3104 3506 4.954202 TGATCTCCGTGAAATGTACTACCT 59.046 41.667 0.00 0.00 0.00 3.08
3117 3519 2.144482 ACTACCTCAAAACCGTGTCG 57.856 50.000 0.00 0.00 0.00 4.35
3119 3521 2.056577 CTACCTCAAAACCGTGTCGTC 58.943 52.381 0.00 0.00 0.00 4.20
3188 3699 3.380637 CCTGCAGCATCTATCTTTTGCTT 59.619 43.478 8.66 0.00 43.94 3.91
3205 3716 8.517878 TCTTTTGCTTCTTCAGATAAGAAATGG 58.482 33.333 2.20 0.00 36.01 3.16
3206 3717 7.765695 TTTGCTTCTTCAGATAAGAAATGGT 57.234 32.000 2.20 0.00 36.01 3.55
3207 3718 7.765695 TTGCTTCTTCAGATAAGAAATGGTT 57.234 32.000 2.20 0.00 36.01 3.67
3208 3719 7.765695 TGCTTCTTCAGATAAGAAATGGTTT 57.234 32.000 2.20 0.00 36.01 3.27
3209 3720 7.596494 TGCTTCTTCAGATAAGAAATGGTTTG 58.404 34.615 2.20 0.00 36.01 2.93
3210 3721 7.231317 TGCTTCTTCAGATAAGAAATGGTTTGT 59.769 33.333 2.20 0.00 36.01 2.83
3211 3722 7.752686 GCTTCTTCAGATAAGAAATGGTTTGTC 59.247 37.037 2.20 0.00 36.01 3.18
3212 3723 8.924511 TTCTTCAGATAAGAAATGGTTTGTCT 57.075 30.769 0.00 0.00 33.72 3.41
3213 3724 8.327941 TCTTCAGATAAGAAATGGTTTGTCTG 57.672 34.615 5.07 5.07 41.25 3.51
3214 3725 7.939039 TCTTCAGATAAGAAATGGTTTGTCTGT 59.061 33.333 9.67 0.00 40.92 3.41
3215 3726 8.463930 TTCAGATAAGAAATGGTTTGTCTGTT 57.536 30.769 9.67 0.00 40.92 3.16
3216 3727 8.463930 TCAGATAAGAAATGGTTTGTCTGTTT 57.536 30.769 9.67 0.00 40.92 2.83
3217 3728 8.912988 TCAGATAAGAAATGGTTTGTCTGTTTT 58.087 29.630 9.67 0.00 40.92 2.43
3218 3729 8.971321 CAGATAAGAAATGGTTTGTCTGTTTTG 58.029 33.333 3.69 0.00 37.60 2.44
3219 3730 7.653311 AGATAAGAAATGGTTTGTCTGTTTTGC 59.347 33.333 0.00 0.00 0.00 3.68
3220 3731 5.343307 AGAAATGGTTTGTCTGTTTTGCT 57.657 34.783 0.00 0.00 0.00 3.91
3221 3732 5.733676 AGAAATGGTTTGTCTGTTTTGCTT 58.266 33.333 0.00 0.00 0.00 3.91
3222 3733 5.812127 AGAAATGGTTTGTCTGTTTTGCTTC 59.188 36.000 0.00 0.00 0.00 3.86
3223 3734 5.343307 AATGGTTTGTCTGTTTTGCTTCT 57.657 34.783 0.00 0.00 0.00 2.85
3224 3735 4.799564 TGGTTTGTCTGTTTTGCTTCTT 57.200 36.364 0.00 0.00 0.00 2.52
3225 3736 4.743493 TGGTTTGTCTGTTTTGCTTCTTC 58.257 39.130 0.00 0.00 0.00 2.87
3226 3737 4.219507 TGGTTTGTCTGTTTTGCTTCTTCA 59.780 37.500 0.00 0.00 0.00 3.02
3227 3738 4.800471 GGTTTGTCTGTTTTGCTTCTTCAG 59.200 41.667 0.00 0.00 0.00 3.02
3228 3739 5.393027 GGTTTGTCTGTTTTGCTTCTTCAGA 60.393 40.000 0.00 0.00 33.60 3.27
3229 3740 6.268566 GTTTGTCTGTTTTGCTTCTTCAGAT 58.731 36.000 0.00 0.00 37.46 2.90
3230 3741 7.417612 GTTTGTCTGTTTTGCTTCTTCAGATA 58.582 34.615 0.00 0.00 37.46 1.98
3231 3742 7.566760 TTGTCTGTTTTGCTTCTTCAGATAA 57.433 32.000 0.00 0.00 37.46 1.75
3232 3743 7.194607 TGTCTGTTTTGCTTCTTCAGATAAG 57.805 36.000 0.00 0.00 37.46 1.73
3233 3744 6.992123 TGTCTGTTTTGCTTCTTCAGATAAGA 59.008 34.615 0.00 0.00 37.46 2.10
3234 3745 7.498900 TGTCTGTTTTGCTTCTTCAGATAAGAA 59.501 33.333 0.00 0.00 37.46 2.52
3238 3749 8.084073 TGTTTTGCTTCTTCAGATAAGAAATGG 58.916 33.333 2.20 0.00 36.01 3.16
3245 3756 7.687941 TCTTCAGATAAGAAATGGTTTGTCC 57.312 36.000 0.00 0.00 0.00 4.02
3256 3767 0.458260 GGTTTGTCCGTTTTGCCTGT 59.542 50.000 0.00 0.00 0.00 4.00
3261 3772 0.869880 GTCCGTTTTGCCTGTTGTGC 60.870 55.000 0.00 0.00 0.00 4.57
3263 3774 1.063327 CGTTTTGCCTGTTGTGCGA 59.937 52.632 0.00 0.00 0.00 5.10
3284 3795 1.134175 GAGCAGAGAGTACTGGAGCAC 59.866 57.143 0.00 0.00 38.22 4.40
3315 3826 1.956170 CGAGTTTGCGCAGAGTGGT 60.956 57.895 13.70 0.00 0.00 4.16
3322 3833 2.896801 GCGCAGAGTGGTTGTGTGG 61.897 63.158 0.30 0.00 31.61 4.17
3324 3835 1.152963 GCAGAGTGGTTGTGTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
3325 3836 1.447317 GCAGAGTGGTTGTGTGGGTG 61.447 60.000 0.00 0.00 0.00 4.61
3379 3890 2.342279 CGTTTGGACGGGAGAGCA 59.658 61.111 0.00 0.00 45.32 4.26
3466 3992 1.598130 GTCCAGAACAAGGCTGCGT 60.598 57.895 0.00 0.00 32.06 5.24
3497 4023 1.338107 AAAGGCTACTTTTGGGCACC 58.662 50.000 0.00 0.00 44.26 5.01
3499 4025 3.913213 AAGGCTACTTTTGGGCACCCC 62.913 57.143 2.51 0.00 40.93 4.95
3509 4035 2.609610 GGCACCCCACTCCTACCA 60.610 66.667 0.00 0.00 0.00 3.25
3519 4045 3.436243 CCACTCCTACCACTTTCTCTCT 58.564 50.000 0.00 0.00 0.00 3.10
3520 4046 3.445805 CCACTCCTACCACTTTCTCTCTC 59.554 52.174 0.00 0.00 0.00 3.20
3523 4050 1.202200 CCTACCACTTTCTCTCTCGCG 60.202 57.143 0.00 0.00 0.00 5.87
3549 4087 1.375523 GGACCGGAGAATTGCGTGT 60.376 57.895 9.46 0.00 36.29 4.49
3570 4116 3.061322 TCGTGTTCCTGGAATTTGTACG 58.939 45.455 13.07 16.52 0.00 3.67
3577 4123 4.062293 TCCTGGAATTTGTACGTGTTCTG 58.938 43.478 0.00 0.00 0.00 3.02
3581 4127 4.024387 TGGAATTTGTACGTGTTCTGAAGC 60.024 41.667 0.00 0.00 0.00 3.86
3624 4178 6.933514 TGGATGGTACTGCATTATGATCTA 57.066 37.500 0.00 0.00 0.00 1.98
3627 4181 6.259608 GGATGGTACTGCATTATGATCTATGC 59.740 42.308 16.22 16.22 45.66 3.14
3660 4214 8.764524 ACATTGTGTTCTGTAGTTATTCTCTC 57.235 34.615 0.00 0.00 0.00 3.20
3674 4230 7.302184 AGTTATTCTCTCTAAGGCTCTATGGT 58.698 38.462 0.00 0.00 0.00 3.55
3675 4231 7.450323 AGTTATTCTCTCTAAGGCTCTATGGTC 59.550 40.741 0.00 0.00 0.00 4.02
3676 4232 5.396057 TTCTCTCTAAGGCTCTATGGTCT 57.604 43.478 0.00 0.00 0.00 3.85
3677 4233 4.980573 TCTCTCTAAGGCTCTATGGTCTC 58.019 47.826 0.00 0.00 0.00 3.36
3678 4234 3.745799 TCTCTAAGGCTCTATGGTCTCG 58.254 50.000 0.00 0.00 0.00 4.04
3679 4235 3.391626 TCTCTAAGGCTCTATGGTCTCGA 59.608 47.826 0.00 0.00 0.00 4.04
3680 4236 4.042311 TCTCTAAGGCTCTATGGTCTCGAT 59.958 45.833 0.00 0.00 0.00 3.59
3681 4237 4.730966 TCTAAGGCTCTATGGTCTCGATT 58.269 43.478 0.00 0.00 0.00 3.34
3682 4238 3.742433 AAGGCTCTATGGTCTCGATTG 57.258 47.619 0.00 0.00 0.00 2.67
3683 4239 2.950781 AGGCTCTATGGTCTCGATTGA 58.049 47.619 0.00 0.00 0.00 2.57
3684 4240 3.300388 AGGCTCTATGGTCTCGATTGAA 58.700 45.455 0.00 0.00 0.00 2.69
3685 4241 3.706594 AGGCTCTATGGTCTCGATTGAAA 59.293 43.478 0.00 0.00 0.00 2.69
3686 4242 4.162320 AGGCTCTATGGTCTCGATTGAAAA 59.838 41.667 0.00 0.00 0.00 2.29
3687 4243 4.509600 GGCTCTATGGTCTCGATTGAAAAG 59.490 45.833 0.00 0.00 0.00 2.27
3688 4244 5.352284 GCTCTATGGTCTCGATTGAAAAGA 58.648 41.667 0.00 0.00 0.00 2.52
3689 4245 5.812642 GCTCTATGGTCTCGATTGAAAAGAA 59.187 40.000 0.00 0.00 0.00 2.52
3690 4246 6.313905 GCTCTATGGTCTCGATTGAAAAGAAA 59.686 38.462 0.00 0.00 0.00 2.52
3691 4247 7.148407 GCTCTATGGTCTCGATTGAAAAGAAAA 60.148 37.037 0.00 0.00 0.00 2.29
3692 4248 8.615878 TCTATGGTCTCGATTGAAAAGAAAAA 57.384 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.062873 CAAAATGTGGCGGCGTAACG 61.063 55.000 9.37 0.00 0.00 3.18
41 42 0.238817 TCAAAATGTGGCGGCGTAAC 59.761 50.000 9.37 8.00 0.00 2.50
42 43 0.952280 TTCAAAATGTGGCGGCGTAA 59.048 45.000 9.37 0.00 0.00 3.18
43 44 0.952280 TTTCAAAATGTGGCGGCGTA 59.048 45.000 9.37 0.00 0.00 4.42
44 45 0.316841 ATTTCAAAATGTGGCGGCGT 59.683 45.000 9.37 0.00 0.00 5.68
45 46 2.270275 TATTTCAAAATGTGGCGGCG 57.730 45.000 0.51 0.51 0.00 6.46
46 47 5.544136 AATTTATTTCAAAATGTGGCGGC 57.456 34.783 0.00 0.00 0.00 6.53
47 48 7.826260 ACTAATTTATTTCAAAATGTGGCGG 57.174 32.000 0.00 0.00 0.00 6.13
98 99 4.710324 ACTAACAGGGACATCGACAAAAA 58.290 39.130 0.00 0.00 0.00 1.94
99 100 4.345859 ACTAACAGGGACATCGACAAAA 57.654 40.909 0.00 0.00 0.00 2.44
100 101 4.525487 ACTACTAACAGGGACATCGACAAA 59.475 41.667 0.00 0.00 0.00 2.83
101 102 4.082408 CACTACTAACAGGGACATCGACAA 60.082 45.833 0.00 0.00 0.00 3.18
102 103 3.442625 CACTACTAACAGGGACATCGACA 59.557 47.826 0.00 0.00 0.00 4.35
103 104 3.442977 ACACTACTAACAGGGACATCGAC 59.557 47.826 0.00 0.00 0.00 4.20
104 105 3.442625 CACACTACTAACAGGGACATCGA 59.557 47.826 0.00 0.00 0.00 3.59
105 106 3.428999 CCACACTACTAACAGGGACATCG 60.429 52.174 0.00 0.00 0.00 3.84
106 107 3.514309 ACCACACTACTAACAGGGACATC 59.486 47.826 0.00 0.00 0.00 3.06
107 108 3.517612 ACCACACTACTAACAGGGACAT 58.482 45.455 0.00 0.00 0.00 3.06
108 109 2.966915 ACCACACTACTAACAGGGACA 58.033 47.619 0.00 0.00 0.00 4.02
109 110 4.525874 ACTTACCACACTACTAACAGGGAC 59.474 45.833 0.00 0.00 0.00 4.46
110 111 4.525487 CACTTACCACACTACTAACAGGGA 59.475 45.833 0.00 0.00 0.00 4.20
111 112 4.282703 ACACTTACCACACTACTAACAGGG 59.717 45.833 0.00 0.00 0.00 4.45
112 113 5.227908 CACACTTACCACACTACTAACAGG 58.772 45.833 0.00 0.00 0.00 4.00
113 114 4.684703 GCACACTTACCACACTACTAACAG 59.315 45.833 0.00 0.00 0.00 3.16
114 115 4.342951 AGCACACTTACCACACTACTAACA 59.657 41.667 0.00 0.00 0.00 2.41
115 116 4.879598 AGCACACTTACCACACTACTAAC 58.120 43.478 0.00 0.00 0.00 2.34
116 117 5.069383 TCAAGCACACTTACCACACTACTAA 59.931 40.000 0.00 0.00 33.74 2.24
117 118 4.585581 TCAAGCACACTTACCACACTACTA 59.414 41.667 0.00 0.00 33.74 1.82
118 119 3.386726 TCAAGCACACTTACCACACTACT 59.613 43.478 0.00 0.00 33.74 2.57
119 120 3.493503 GTCAAGCACACTTACCACACTAC 59.506 47.826 0.00 0.00 33.74 2.73
120 121 3.133183 TGTCAAGCACACTTACCACACTA 59.867 43.478 0.00 0.00 33.74 2.74
121 122 2.093181 TGTCAAGCACACTTACCACACT 60.093 45.455 0.00 0.00 33.74 3.55
122 123 2.285083 TGTCAAGCACACTTACCACAC 58.715 47.619 0.00 0.00 33.74 3.82
123 124 2.700722 TGTCAAGCACACTTACCACA 57.299 45.000 0.00 0.00 33.74 4.17
124 125 4.568152 AATTGTCAAGCACACTTACCAC 57.432 40.909 0.00 0.00 33.41 4.16
125 126 5.126222 TGAAAATTGTCAAGCACACTTACCA 59.874 36.000 0.00 0.00 33.41 3.25
126 127 5.587289 TGAAAATTGTCAAGCACACTTACC 58.413 37.500 0.00 0.00 33.41 2.85
127 128 6.346040 GCATGAAAATTGTCAAGCACACTTAC 60.346 38.462 18.63 0.00 40.93 2.34
128 129 5.691305 GCATGAAAATTGTCAAGCACACTTA 59.309 36.000 18.63 0.00 40.93 2.24
129 130 4.508861 GCATGAAAATTGTCAAGCACACTT 59.491 37.500 18.63 0.00 40.93 3.16
130 131 4.053295 GCATGAAAATTGTCAAGCACACT 58.947 39.130 18.63 0.00 40.93 3.55
131 132 3.184986 GGCATGAAAATTGTCAAGCACAC 59.815 43.478 23.38 6.52 42.58 3.82
132 133 3.181468 TGGCATGAAAATTGTCAAGCACA 60.181 39.130 23.38 16.69 42.58 4.57
133 134 3.391965 TGGCATGAAAATTGTCAAGCAC 58.608 40.909 23.38 14.75 42.58 4.40
134 135 3.747854 TGGCATGAAAATTGTCAAGCA 57.252 38.095 23.38 10.02 42.58 3.91
135 136 5.277154 GCATATGGCATGAAAATTGTCAAGC 60.277 40.000 15.93 15.93 43.97 4.01
136 137 5.051307 CGCATATGGCATGAAAATTGTCAAG 60.051 40.000 10.98 0.00 45.17 3.02
137 138 4.804665 CGCATATGGCATGAAAATTGTCAA 59.195 37.500 10.98 0.00 45.17 3.18
138 139 4.097589 TCGCATATGGCATGAAAATTGTCA 59.902 37.500 10.98 0.00 45.17 3.58
139 140 4.609947 TCGCATATGGCATGAAAATTGTC 58.390 39.130 10.98 0.00 45.17 3.18
140 141 4.652421 TCGCATATGGCATGAAAATTGT 57.348 36.364 10.98 0.00 45.17 2.71
141 142 5.803461 CCTATCGCATATGGCATGAAAATTG 59.197 40.000 10.98 0.00 45.17 2.32
142 143 5.711506 TCCTATCGCATATGGCATGAAAATT 59.288 36.000 10.98 0.00 45.17 1.82
143 144 5.255687 TCCTATCGCATATGGCATGAAAAT 58.744 37.500 10.98 0.00 45.17 1.82
144 145 4.650734 TCCTATCGCATATGGCATGAAAA 58.349 39.130 10.98 0.00 45.17 2.29
145 146 4.256110 CTCCTATCGCATATGGCATGAAA 58.744 43.478 10.98 0.00 45.17 2.69
146 147 3.261643 ACTCCTATCGCATATGGCATGAA 59.738 43.478 10.98 0.00 45.17 2.57
147 148 2.833943 ACTCCTATCGCATATGGCATGA 59.166 45.455 10.98 0.00 45.17 3.07
148 149 2.934553 CACTCCTATCGCATATGGCATG 59.065 50.000 10.98 0.00 45.17 4.06
149 150 2.679059 GCACTCCTATCGCATATGGCAT 60.679 50.000 4.88 4.88 45.17 4.40
150 151 1.338105 GCACTCCTATCGCATATGGCA 60.338 52.381 4.56 0.00 45.17 4.92
151 152 1.066573 AGCACTCCTATCGCATATGGC 60.067 52.381 4.56 0.00 39.90 4.40
152 153 3.325293 AAGCACTCCTATCGCATATGG 57.675 47.619 4.56 0.00 0.00 2.74
153 154 4.060900 ACAAAGCACTCCTATCGCATATG 58.939 43.478 0.00 0.00 0.00 1.78
154 155 4.202253 TGACAAAGCACTCCTATCGCATAT 60.202 41.667 0.00 0.00 0.00 1.78
155 156 3.132111 TGACAAAGCACTCCTATCGCATA 59.868 43.478 0.00 0.00 0.00 3.14
156 157 2.093500 TGACAAAGCACTCCTATCGCAT 60.093 45.455 0.00 0.00 0.00 4.73
157 158 1.275010 TGACAAAGCACTCCTATCGCA 59.725 47.619 0.00 0.00 0.00 5.10
158 159 1.929836 CTGACAAAGCACTCCTATCGC 59.070 52.381 0.00 0.00 0.00 4.58
159 160 2.926200 CACTGACAAAGCACTCCTATCG 59.074 50.000 0.00 0.00 0.00 2.92
160 161 3.931578 ACACTGACAAAGCACTCCTATC 58.068 45.455 0.00 0.00 0.00 2.08
161 162 5.483685 TTACACTGACAAAGCACTCCTAT 57.516 39.130 0.00 0.00 0.00 2.57
162 163 4.948341 TTACACTGACAAAGCACTCCTA 57.052 40.909 0.00 0.00 0.00 2.94
163 164 3.838244 TTACACTGACAAAGCACTCCT 57.162 42.857 0.00 0.00 0.00 3.69
164 165 4.893424 TTTTACACTGACAAAGCACTCC 57.107 40.909 0.00 0.00 0.00 3.85
165 166 5.636837 TGTTTTTACACTGACAAAGCACTC 58.363 37.500 0.00 0.00 0.00 3.51
166 167 5.637006 TGTTTTTACACTGACAAAGCACT 57.363 34.783 0.00 0.00 0.00 4.40
167 168 6.698359 TTTGTTTTTACACTGACAAAGCAC 57.302 33.333 0.00 0.00 37.15 4.40
168 169 7.518731 GATTTGTTTTTACACTGACAAAGCA 57.481 32.000 10.14 0.00 43.77 3.91
169 170 7.518731 TGATTTGTTTTTACACTGACAAAGC 57.481 32.000 8.57 8.57 44.27 3.51
231 232 9.819267 TCTGTCCCAAAATATAAAAACGTTTTT 57.181 25.926 33.94 33.94 42.51 1.94
232 233 9.471084 CTCTGTCCCAAAATATAAAAACGTTTT 57.529 29.630 20.26 20.26 0.00 2.43
233 234 8.085909 CCTCTGTCCCAAAATATAAAAACGTTT 58.914 33.333 7.96 7.96 0.00 3.60
234 235 7.309560 CCCTCTGTCCCAAAATATAAAAACGTT 60.310 37.037 0.00 0.00 0.00 3.99
235 236 6.152154 CCCTCTGTCCCAAAATATAAAAACGT 59.848 38.462 0.00 0.00 0.00 3.99
236 237 6.152154 ACCCTCTGTCCCAAAATATAAAAACG 59.848 38.462 0.00 0.00 0.00 3.60
237 238 7.039293 ACACCCTCTGTCCCAAAATATAAAAAC 60.039 37.037 0.00 0.00 0.00 2.43
238 239 7.013834 ACACCCTCTGTCCCAAAATATAAAAA 58.986 34.615 0.00 0.00 0.00 1.94
239 240 6.557568 ACACCCTCTGTCCCAAAATATAAAA 58.442 36.000 0.00 0.00 0.00 1.52
240 241 6.147437 ACACCCTCTGTCCCAAAATATAAA 57.853 37.500 0.00 0.00 0.00 1.40
241 242 5.789574 ACACCCTCTGTCCCAAAATATAA 57.210 39.130 0.00 0.00 0.00 0.98
242 243 8.570038 TTATACACCCTCTGTCCCAAAATATA 57.430 34.615 0.00 0.00 33.91 0.86
243 244 5.994416 ATACACCCTCTGTCCCAAAATAT 57.006 39.130 0.00 0.00 33.91 1.28
244 245 6.445786 ACTTATACACCCTCTGTCCCAAAATA 59.554 38.462 0.00 0.00 33.91 1.40
245 246 5.253096 ACTTATACACCCTCTGTCCCAAAAT 59.747 40.000 0.00 0.00 33.91 1.82
246 247 4.600111 ACTTATACACCCTCTGTCCCAAAA 59.400 41.667 0.00 0.00 33.91 2.44
247 248 4.172807 ACTTATACACCCTCTGTCCCAAA 58.827 43.478 0.00 0.00 33.91 3.28
248 249 3.798515 ACTTATACACCCTCTGTCCCAA 58.201 45.455 0.00 0.00 33.91 4.12
249 250 3.484953 ACTTATACACCCTCTGTCCCA 57.515 47.619 0.00 0.00 33.91 4.37
250 251 4.838904 AAACTTATACACCCTCTGTCCC 57.161 45.455 0.00 0.00 33.91 4.46
251 252 6.002082 ACAAAAACTTATACACCCTCTGTCC 58.998 40.000 0.00 0.00 33.91 4.02
252 253 8.092687 TCTACAAAAACTTATACACCCTCTGTC 58.907 37.037 0.00 0.00 33.91 3.51
253 254 7.970102 TCTACAAAAACTTATACACCCTCTGT 58.030 34.615 0.00 0.00 36.82 3.41
254 255 8.311836 TCTCTACAAAAACTTATACACCCTCTG 58.688 37.037 0.00 0.00 0.00 3.35
255 256 8.431910 TCTCTACAAAAACTTATACACCCTCT 57.568 34.615 0.00 0.00 0.00 3.69
256 257 9.668497 AATCTCTACAAAAACTTATACACCCTC 57.332 33.333 0.00 0.00 0.00 4.30
270 271 9.750783 AGTCTACCTAGTGTAATCTCTACAAAA 57.249 33.333 0.00 0.00 0.00 2.44
272 273 9.829507 GTAGTCTACCTAGTGTAATCTCTACAA 57.170 37.037 0.00 0.00 0.00 2.41
273 274 8.985922 TGTAGTCTACCTAGTGTAATCTCTACA 58.014 37.037 7.56 0.00 32.46 2.74
281 282 9.064706 GCTTCATATGTAGTCTACCTAGTGTAA 57.935 37.037 10.61 0.00 0.00 2.41
282 283 8.215736 TGCTTCATATGTAGTCTACCTAGTGTA 58.784 37.037 10.61 0.00 0.00 2.90
283 284 7.061054 TGCTTCATATGTAGTCTACCTAGTGT 58.939 38.462 10.61 0.00 0.00 3.55
284 285 7.511959 TGCTTCATATGTAGTCTACCTAGTG 57.488 40.000 10.61 2.33 0.00 2.74
285 286 8.534954 TTTGCTTCATATGTAGTCTACCTAGT 57.465 34.615 10.61 0.00 0.00 2.57
286 287 9.988815 ATTTTGCTTCATATGTAGTCTACCTAG 57.011 33.333 10.61 0.00 0.00 3.02
287 288 9.764363 CATTTTGCTTCATATGTAGTCTACCTA 57.236 33.333 10.61 2.71 0.00 3.08
288 289 8.486210 TCATTTTGCTTCATATGTAGTCTACCT 58.514 33.333 10.61 0.35 0.00 3.08
289 290 8.662781 TCATTTTGCTTCATATGTAGTCTACC 57.337 34.615 10.61 0.00 0.00 3.18
292 293 9.399797 TCATTCATTTTGCTTCATATGTAGTCT 57.600 29.630 10.61 0.00 0.00 3.24
301 302 8.746530 AGTGTAGATTCATTCATTTTGCTTCAT 58.253 29.630 0.00 0.00 0.00 2.57
302 303 8.114331 AGTGTAGATTCATTCATTTTGCTTCA 57.886 30.769 0.00 0.00 0.00 3.02
303 304 8.976986 AAGTGTAGATTCATTCATTTTGCTTC 57.023 30.769 0.00 0.00 0.00 3.86
325 326 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
329 330 9.330063 CCATACGGATGTATATAGATGCATTTT 57.670 33.333 6.92 0.00 38.38 1.82
330 331 7.933577 CCCATACGGATGTATATAGATGCATTT 59.066 37.037 6.92 0.00 38.38 2.32
331 332 7.445121 CCCATACGGATGTATATAGATGCATT 58.555 38.462 6.92 1.23 38.38 3.56
332 333 6.014242 CCCCATACGGATGTATATAGATGCAT 60.014 42.308 6.92 0.00 40.68 3.96
333 334 5.304357 CCCCATACGGATGTATATAGATGCA 59.696 44.000 6.92 0.00 39.28 3.96
334 335 5.304614 ACCCCATACGGATGTATATAGATGC 59.695 44.000 6.92 0.00 39.28 3.91
335 336 6.978674 ACCCCATACGGATGTATATAGATG 57.021 41.667 6.92 0.00 39.28 2.90
336 337 7.130099 TGAACCCCATACGGATGTATATAGAT 58.870 38.462 6.92 0.00 39.28 1.98
337 338 6.495847 TGAACCCCATACGGATGTATATAGA 58.504 40.000 6.92 0.00 39.28 1.98
338 339 6.785337 TGAACCCCATACGGATGTATATAG 57.215 41.667 6.92 0.00 39.28 1.31
339 340 8.841754 TTATGAACCCCATACGGATGTATATA 57.158 34.615 6.92 0.00 39.28 0.86
340 341 7.743116 TTATGAACCCCATACGGATGTATAT 57.257 36.000 6.92 0.00 39.28 0.86
341 342 7.743116 ATTATGAACCCCATACGGATGTATA 57.257 36.000 6.92 0.00 39.28 1.47
342 343 6.636454 ATTATGAACCCCATACGGATGTAT 57.364 37.500 6.92 0.00 42.03 2.29
343 344 7.556416 TTATTATGAACCCCATACGGATGTA 57.444 36.000 6.92 0.00 37.46 2.29
344 345 4.993705 ATTATGAACCCCATACGGATGT 57.006 40.909 6.92 0.00 37.46 3.06
345 346 7.753309 TTTTATTATGAACCCCATACGGATG 57.247 36.000 0.00 0.00 37.46 3.51
346 347 8.390921 AGATTTTATTATGAACCCCATACGGAT 58.609 33.333 0.00 0.00 37.46 4.18
347 348 7.751646 AGATTTTATTATGAACCCCATACGGA 58.248 34.615 0.00 0.00 37.46 4.69
348 349 7.883311 AGAGATTTTATTATGAACCCCATACGG 59.117 37.037 0.00 0.00 37.46 4.02
349 350 8.848474 AGAGATTTTATTATGAACCCCATACG 57.152 34.615 0.00 0.00 37.46 3.06
353 354 9.983024 TTTGTAGAGATTTTATTATGAACCCCA 57.017 29.630 0.00 0.00 0.00 4.96
413 414 9.878599 CTGCGATAAATAATTCGGAACTAAAAT 57.121 29.630 0.00 0.00 35.28 1.82
414 415 8.339714 CCTGCGATAAATAATTCGGAACTAAAA 58.660 33.333 0.00 0.00 35.28 1.52
415 416 7.496591 ACCTGCGATAAATAATTCGGAACTAAA 59.503 33.333 0.00 0.00 35.28 1.85
416 417 6.987992 ACCTGCGATAAATAATTCGGAACTAA 59.012 34.615 0.00 0.00 35.28 2.24
417 418 6.518493 ACCTGCGATAAATAATTCGGAACTA 58.482 36.000 0.00 0.00 35.28 2.24
418 419 5.365619 ACCTGCGATAAATAATTCGGAACT 58.634 37.500 0.00 0.00 35.28 3.01
419 420 5.668558 ACCTGCGATAAATAATTCGGAAC 57.331 39.130 0.00 0.00 35.28 3.62
420 421 7.156000 TCATACCTGCGATAAATAATTCGGAA 58.844 34.615 0.00 0.00 35.28 4.30
421 422 6.693466 TCATACCTGCGATAAATAATTCGGA 58.307 36.000 0.00 0.00 35.93 4.55
422 423 6.961359 TCATACCTGCGATAAATAATTCGG 57.039 37.500 0.00 0.00 35.93 4.30
423 424 8.443160 ACATTCATACCTGCGATAAATAATTCG 58.557 33.333 0.00 0.00 38.37 3.34
429 430 9.809096 CTAGATACATTCATACCTGCGATAAAT 57.191 33.333 0.00 0.00 0.00 1.40
430 431 9.020731 TCTAGATACATTCATACCTGCGATAAA 57.979 33.333 0.00 0.00 0.00 1.40
431 432 8.575649 TCTAGATACATTCATACCTGCGATAA 57.424 34.615 0.00 0.00 0.00 1.75
432 433 8.624776 CATCTAGATACATTCATACCTGCGATA 58.375 37.037 4.54 0.00 0.00 2.92
433 434 7.123397 ACATCTAGATACATTCATACCTGCGAT 59.877 37.037 4.54 0.00 0.00 4.58
434 435 6.434340 ACATCTAGATACATTCATACCTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
435 436 6.625362 ACATCTAGATACATTCATACCTGCG 58.375 40.000 4.54 0.00 0.00 5.18
463 464 9.781834 CGCAAAAATGGATGTATCTAAAACTAA 57.218 29.630 0.00 0.00 0.00 2.24
464 465 9.168451 TCGCAAAAATGGATGTATCTAAAACTA 57.832 29.630 0.00 0.00 0.00 2.24
465 466 7.968405 GTCGCAAAAATGGATGTATCTAAAACT 59.032 33.333 0.00 0.00 0.00 2.66
466 467 7.044966 CGTCGCAAAAATGGATGTATCTAAAAC 60.045 37.037 0.00 0.00 0.00 2.43
467 468 6.964370 CGTCGCAAAAATGGATGTATCTAAAA 59.036 34.615 0.00 0.00 0.00 1.52
468 469 6.314152 TCGTCGCAAAAATGGATGTATCTAAA 59.686 34.615 0.00 0.00 0.00 1.85
469 470 5.813157 TCGTCGCAAAAATGGATGTATCTAA 59.187 36.000 0.00 0.00 0.00 2.10
470 471 5.353111 TCGTCGCAAAAATGGATGTATCTA 58.647 37.500 0.00 0.00 0.00 1.98
471 472 4.188462 TCGTCGCAAAAATGGATGTATCT 58.812 39.130 0.00 0.00 0.00 1.98
472 473 4.530094 TCGTCGCAAAAATGGATGTATC 57.470 40.909 0.00 0.00 0.00 2.24
473 474 4.955925 TTCGTCGCAAAAATGGATGTAT 57.044 36.364 0.00 0.00 0.00 2.29
474 475 4.955925 ATTCGTCGCAAAAATGGATGTA 57.044 36.364 0.00 0.00 0.00 2.29
475 476 3.848272 ATTCGTCGCAAAAATGGATGT 57.152 38.095 0.00 0.00 0.00 3.06
476 477 6.810888 AATTATTCGTCGCAAAAATGGATG 57.189 33.333 0.00 0.00 0.00 3.51
477 478 7.032580 TCAAATTATTCGTCGCAAAAATGGAT 58.967 30.769 0.00 0.00 0.00 3.41
478 479 6.382608 TCAAATTATTCGTCGCAAAAATGGA 58.617 32.000 0.00 0.00 0.00 3.41
479 480 6.624710 TCAAATTATTCGTCGCAAAAATGG 57.375 33.333 0.00 0.00 0.00 3.16
480 481 7.209852 CGTTTCAAATTATTCGTCGCAAAAATG 59.790 33.333 0.00 0.00 0.00 2.32
481 482 7.096394 ACGTTTCAAATTATTCGTCGCAAAAAT 60.096 29.630 0.00 0.00 0.00 1.82
482 483 6.196724 ACGTTTCAAATTATTCGTCGCAAAAA 59.803 30.769 0.00 0.00 0.00 1.94
483 484 5.681982 ACGTTTCAAATTATTCGTCGCAAAA 59.318 32.000 0.00 0.00 0.00 2.44
484 485 5.114273 CACGTTTCAAATTATTCGTCGCAAA 59.886 36.000 0.00 0.00 0.00 3.68
485 486 4.609295 CACGTTTCAAATTATTCGTCGCAA 59.391 37.500 0.00 0.00 0.00 4.85
486 487 4.145276 CACGTTTCAAATTATTCGTCGCA 58.855 39.130 0.00 0.00 0.00 5.10
487 488 3.536837 CCACGTTTCAAATTATTCGTCGC 59.463 43.478 0.00 0.00 0.00 5.19
488 489 4.085884 CCCACGTTTCAAATTATTCGTCG 58.914 43.478 0.00 0.00 0.00 5.12
489 490 5.084055 GTCCCACGTTTCAAATTATTCGTC 58.916 41.667 0.00 0.00 0.00 4.20
490 491 4.377635 CGTCCCACGTTTCAAATTATTCGT 60.378 41.667 0.00 0.00 36.74 3.85
491 492 4.085884 CGTCCCACGTTTCAAATTATTCG 58.914 43.478 0.00 0.00 36.74 3.34
492 493 5.084055 GTCGTCCCACGTTTCAAATTATTC 58.916 41.667 0.00 0.00 43.14 1.75
493 494 4.515944 TGTCGTCCCACGTTTCAAATTATT 59.484 37.500 0.00 0.00 43.14 1.40
494 495 4.066490 TGTCGTCCCACGTTTCAAATTAT 58.934 39.130 0.00 0.00 43.14 1.28
495 496 3.464907 TGTCGTCCCACGTTTCAAATTA 58.535 40.909 0.00 0.00 43.14 1.40
496 497 2.290464 TGTCGTCCCACGTTTCAAATT 58.710 42.857 0.00 0.00 43.14 1.82
497 498 1.956297 TGTCGTCCCACGTTTCAAAT 58.044 45.000 0.00 0.00 43.14 2.32
498 499 1.868498 GATGTCGTCCCACGTTTCAAA 59.132 47.619 0.00 0.00 43.14 2.69
499 500 1.202545 TGATGTCGTCCCACGTTTCAA 60.203 47.619 0.00 0.00 43.14 2.69
500 501 0.389757 TGATGTCGTCCCACGTTTCA 59.610 50.000 0.00 0.00 43.14 2.69
501 502 1.504359 TTGATGTCGTCCCACGTTTC 58.496 50.000 0.00 0.00 43.14 2.78
502 503 2.073816 GATTGATGTCGTCCCACGTTT 58.926 47.619 0.00 0.00 43.14 3.60
503 504 1.674817 GGATTGATGTCGTCCCACGTT 60.675 52.381 0.00 0.00 43.14 3.99
504 505 0.108329 GGATTGATGTCGTCCCACGT 60.108 55.000 0.00 0.00 43.14 4.49
505 506 0.108377 TGGATTGATGTCGTCCCACG 60.108 55.000 0.00 0.00 44.19 4.94
506 507 2.213499 GATGGATTGATGTCGTCCCAC 58.787 52.381 0.00 0.00 0.00 4.61
507 508 1.140852 GGATGGATTGATGTCGTCCCA 59.859 52.381 0.00 0.00 0.00 4.37
508 509 1.140852 TGGATGGATTGATGTCGTCCC 59.859 52.381 0.00 0.00 0.00 4.46
509 510 2.620251 TGGATGGATTGATGTCGTCC 57.380 50.000 0.00 0.00 0.00 4.79
510 511 3.732212 TGATGGATGGATTGATGTCGTC 58.268 45.455 0.00 0.00 0.00 4.20
511 512 3.843893 TGATGGATGGATTGATGTCGT 57.156 42.857 0.00 0.00 0.00 4.34
512 513 5.335426 GGAATTGATGGATGGATTGATGTCG 60.335 44.000 0.00 0.00 0.00 4.35
513 514 5.773680 AGGAATTGATGGATGGATTGATGTC 59.226 40.000 0.00 0.00 0.00 3.06
514 515 5.712752 AGGAATTGATGGATGGATTGATGT 58.287 37.500 0.00 0.00 0.00 3.06
618 619 4.000557 GGACAGTGTGCGTGCGTG 62.001 66.667 0.00 0.00 0.00 5.34
743 759 2.467566 TCTACCGCCTCCTTTTTGAC 57.532 50.000 0.00 0.00 0.00 3.18
744 760 3.606687 GAATCTACCGCCTCCTTTTTGA 58.393 45.455 0.00 0.00 0.00 2.69
746 762 2.307686 TGGAATCTACCGCCTCCTTTTT 59.692 45.455 0.00 0.00 0.00 1.94
750 766 0.032017 AGTGGAATCTACCGCCTCCT 60.032 55.000 0.00 0.00 40.86 3.69
752 768 0.105039 CCAGTGGAATCTACCGCCTC 59.895 60.000 1.68 0.00 40.86 4.70
753 769 1.972660 GCCAGTGGAATCTACCGCCT 61.973 60.000 15.20 0.00 40.86 5.52
771 823 0.107703 TCAGATCACCGGTGGAATGC 60.108 55.000 33.40 17.73 0.00 3.56
772 824 2.216046 CATCAGATCACCGGTGGAATG 58.784 52.381 33.40 26.11 0.00 2.67
773 825 1.141657 CCATCAGATCACCGGTGGAAT 59.858 52.381 33.40 21.08 0.00 3.01
774 826 0.541392 CCATCAGATCACCGGTGGAA 59.459 55.000 33.40 16.87 0.00 3.53
775 827 1.337384 CCCATCAGATCACCGGTGGA 61.337 60.000 33.40 22.59 0.00 4.02
792 844 1.445582 CTGCCGTCTGTTCGTACCC 60.446 63.158 0.00 0.00 0.00 3.69
814 866 2.484062 CCGAGGTGGCAATGGCATC 61.484 63.158 13.81 13.13 43.71 3.91
815 867 2.440796 CCGAGGTGGCAATGGCAT 60.441 61.111 13.81 0.00 43.71 4.40
816 868 4.738998 CCCGAGGTGGCAATGGCA 62.739 66.667 5.05 5.05 43.71 4.92
854 929 1.268283 GGGGGCTAGCTGGCTATAGG 61.268 65.000 22.23 0.00 41.48 2.57
877 952 1.210722 GGGGTTTTAGCCAGAGAGAGG 59.789 57.143 0.00 0.00 37.54 3.69
878 953 1.909302 TGGGGTTTTAGCCAGAGAGAG 59.091 52.381 0.00 0.00 37.54 3.20
886 961 0.682852 GTTGGGTTGGGGTTTTAGCC 59.317 55.000 0.00 0.00 34.31 3.93
936 1011 0.392327 GAGAACCTTCCTGCTCTGCC 60.392 60.000 0.00 0.00 0.00 4.85
956 1031 2.653702 GCCCTCCTCCGATCGATG 59.346 66.667 18.66 8.51 0.00 3.84
1015 1115 0.250901 GAGGTGGTGGTCAAGCATGT 60.251 55.000 0.00 0.00 38.84 3.21
1017 1117 1.003355 CGAGGTGGTGGTCAAGCAT 60.003 57.895 0.00 0.00 38.84 3.79
1018 1118 2.377628 GACGAGGTGGTGGTCAAGCA 62.378 60.000 0.00 0.00 34.15 3.91
1021 1121 1.829096 TCGACGAGGTGGTGGTCAA 60.829 57.895 0.00 0.00 33.59 3.18
1023 1123 2.257676 GTCGACGAGGTGGTGGTC 59.742 66.667 0.00 0.00 0.00 4.02
1030 1130 3.823330 GATGGGCGTCGACGAGGT 61.823 66.667 39.74 21.73 43.02 3.85
1036 1136 4.193334 CGAGCAGATGGGCGTCGA 62.193 66.667 0.00 0.00 36.92 4.20
1039 1164 2.419198 GATCGAGCAGATGGGCGT 59.581 61.111 0.00 0.00 40.26 5.68
1042 1167 1.707632 GATTCGATCGAGCAGATGGG 58.292 55.000 18.54 0.00 40.26 4.00
1098 1223 0.109689 CGAGACACGGAGACAAGGAC 60.110 60.000 0.00 0.00 38.46 3.85
1125 1250 2.825726 CTTCTTCTGCAGCCGCGAGA 62.826 60.000 8.23 0.00 42.97 4.04
1126 1251 2.433145 TTCTTCTGCAGCCGCGAG 60.433 61.111 8.23 0.00 42.97 5.03
1127 1252 2.433145 CTTCTTCTGCAGCCGCGA 60.433 61.111 8.23 0.00 42.97 5.87
1128 1253 1.964290 CTTCTTCTTCTGCAGCCGCG 61.964 60.000 9.47 0.00 42.97 6.46
1129 1254 1.792941 CTTCTTCTTCTGCAGCCGC 59.207 57.895 9.47 0.00 39.24 6.53
1130 1255 1.792941 GCTTCTTCTTCTGCAGCCG 59.207 57.895 9.47 1.93 0.00 5.52
1168 1299 3.636231 CCTTCGCCTCCACCACCA 61.636 66.667 0.00 0.00 0.00 4.17
1174 1305 2.364317 CCTCCTCCTTCGCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
1183 1314 2.123077 CCGCATCCTCCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1213 1344 4.214327 GCCTCGGGCTTCTCCTCG 62.214 72.222 7.58 0.00 46.69 4.63
1500 1652 1.460273 GGGAGAGGAGAGGATCGTGC 61.460 65.000 0.00 0.00 42.67 5.34
1519 1676 2.807045 GCACGCGTGACAGAGAGG 60.807 66.667 41.19 13.39 0.00 3.69
1551 1708 0.861837 CGGAGAACACAGAACAGTGC 59.138 55.000 0.00 0.00 43.23 4.40
1628 1792 3.030308 CGACAGACACGCGCAGTT 61.030 61.111 5.73 0.00 0.00 3.16
1645 1809 4.828296 CTCCACCCCTGCATGGCC 62.828 72.222 1.83 0.00 35.81 5.36
1646 1810 4.828296 CCTCCACCCCTGCATGGC 62.828 72.222 1.83 0.00 35.81 4.40
1647 1811 4.133373 CCCTCCACCCCTGCATGG 62.133 72.222 0.13 0.13 37.32 3.66
1717 1882 3.066814 GGCCTGCAGCTTCTTGGG 61.067 66.667 8.66 0.00 43.05 4.12
1733 1898 4.735132 TCTTGGAAGCGACGCGGG 62.735 66.667 15.18 2.38 0.00 6.13
1743 1908 2.372172 GACCTTCTTCCTGGTCTTGGAA 59.628 50.000 5.05 0.00 46.65 3.53
1803 1999 3.172106 TTGTCCTTGTCCCCGCCA 61.172 61.111 0.00 0.00 0.00 5.69
1806 2002 1.966451 GCACTTGTCCTTGTCCCCG 60.966 63.158 0.00 0.00 0.00 5.73
2013 2270 3.989817 TGTCATCATCAGCATACGCATAC 59.010 43.478 0.00 0.00 42.27 2.39
2014 2271 4.255833 TGTCATCATCAGCATACGCATA 57.744 40.909 0.00 0.00 42.27 3.14
2034 2291 1.718396 TTCAGTCGAGCAGAGCAATG 58.282 50.000 0.00 0.00 0.00 2.82
2053 2310 3.763360 TGCCATCAAACCAAATCGAGAAT 59.237 39.130 0.00 0.00 0.00 2.40
2055 2312 2.749076 CTGCCATCAAACCAAATCGAGA 59.251 45.455 0.00 0.00 0.00 4.04
2066 2323 1.001020 ATCACCGGCTGCCATCAAA 60.001 52.632 20.29 0.00 0.00 2.69
2186 2451 3.695606 GCAGGTGGAGGAGACGCA 61.696 66.667 0.00 0.00 0.00 5.24
2189 2454 3.403558 GGGGCAGGTGGAGGAGAC 61.404 72.222 0.00 0.00 0.00 3.36
2231 2502 1.000163 GCTGTGTCCGTCTCTTGAAGA 60.000 52.381 0.00 0.00 0.00 2.87
2232 2503 1.423395 GCTGTGTCCGTCTCTTGAAG 58.577 55.000 0.00 0.00 0.00 3.02
2234 2505 1.285950 CGCTGTGTCCGTCTCTTGA 59.714 57.895 0.00 0.00 0.00 3.02
2235 2506 2.375766 GCGCTGTGTCCGTCTCTTG 61.376 63.158 0.00 0.00 0.00 3.02
2236 2507 2.049063 GCGCTGTGTCCGTCTCTT 60.049 61.111 0.00 0.00 0.00 2.85
2265 2540 1.066573 ACAGGGAATTCAGTCGAGCAG 60.067 52.381 7.93 0.00 0.00 4.24
2322 2643 4.479158 ACACACAATGTAGGTTCCCAATT 58.521 39.130 0.00 0.00 40.88 2.32
2327 2648 2.621055 TGCAACACACAATGTAGGTTCC 59.379 45.455 0.00 0.00 42.31 3.62
2329 2650 2.622942 CCTGCAACACACAATGTAGGTT 59.377 45.455 2.24 0.00 42.31 3.50
2343 2664 3.730761 CTGCTCCACGCCTGCAAC 61.731 66.667 0.00 0.00 38.05 4.17
2733 3081 3.633094 CTGTCTGTCAGTCCGCCGG 62.633 68.421 0.00 0.00 39.17 6.13
2737 3085 4.443621 TCTACTATCTGTCTGTCAGTCCG 58.556 47.826 0.00 0.00 43.97 4.79
2773 3125 0.965439 CCAAATTCAGGTTTCGCCCA 59.035 50.000 0.00 0.00 38.26 5.36
2777 3129 4.419522 CCTGTACCAAATTCAGGTTTCG 57.580 45.455 7.73 0.00 42.42 3.46
2786 3138 1.910671 TCCGGTAGCCTGTACCAAATT 59.089 47.619 0.00 0.00 37.44 1.82
2817 3169 7.156000 TGTAATGAACCAACGACTGAATTCTA 58.844 34.615 7.05 0.00 0.00 2.10
2894 3253 3.241067 CCAAACATGGCCAAGAATCTG 57.759 47.619 16.33 7.68 0.00 2.90
2919 3278 4.098807 CCATCAACAAGCCATCATCATCAA 59.901 41.667 0.00 0.00 0.00 2.57
2943 3306 4.043200 GCAGCCAGCCAACGGTTC 62.043 66.667 0.00 0.00 37.23 3.62
2964 3327 2.833794 TCACCCCAAAATCGATCGATC 58.166 47.619 29.48 15.68 33.08 3.69
2989 3352 5.873712 ACTTCAGAACATCTACATGCTTCAG 59.126 40.000 0.00 0.00 32.57 3.02
2990 3353 5.798132 ACTTCAGAACATCTACATGCTTCA 58.202 37.500 0.00 0.00 32.57 3.02
2991 3354 6.593382 AGAACTTCAGAACATCTACATGCTTC 59.407 38.462 0.00 0.00 32.57 3.86
2992 3355 6.471146 AGAACTTCAGAACATCTACATGCTT 58.529 36.000 0.00 0.00 32.57 3.91
2993 3356 6.047511 AGAACTTCAGAACATCTACATGCT 57.952 37.500 0.00 0.00 32.57 3.79
2994 3357 6.541086 CAAGAACTTCAGAACATCTACATGC 58.459 40.000 0.00 0.00 32.57 4.06
2995 3358 6.541086 GCAAGAACTTCAGAACATCTACATG 58.459 40.000 0.00 0.00 35.92 3.21
2996 3359 5.349817 CGCAAGAACTTCAGAACATCTACAT 59.650 40.000 0.00 0.00 43.02 2.29
2997 3360 4.686091 CGCAAGAACTTCAGAACATCTACA 59.314 41.667 0.00 0.00 43.02 2.74
2998 3361 5.196809 CGCAAGAACTTCAGAACATCTAC 57.803 43.478 0.00 0.00 43.02 2.59
3019 3382 3.460103 TCCATCACATCACATCACATCG 58.540 45.455 0.00 0.00 0.00 3.84
3047 3417 2.750712 TGCCATCATGGATCATAATGCG 59.249 45.455 8.30 0.00 40.96 4.73
3048 3418 3.508402 TGTGCCATCATGGATCATAATGC 59.492 43.478 8.30 0.00 40.96 3.56
3055 3425 5.417894 ACATAATGATGTGCCATCATGGATC 59.582 40.000 23.11 2.06 44.90 3.36
3058 3428 6.376018 TCATACATAATGATGTGCCATCATGG 59.624 38.462 23.11 18.74 46.11 3.66
3059 3429 7.385778 TCATACATAATGATGTGCCATCATG 57.614 36.000 23.11 17.36 46.11 3.07
3104 3506 1.292061 CCAAGACGACACGGTTTTGA 58.708 50.000 0.00 0.00 34.84 2.69
3117 3519 1.681264 CAACCAGGAACCAACCAAGAC 59.319 52.381 0.00 0.00 0.00 3.01
3119 3521 1.039856 CCAACCAGGAACCAACCAAG 58.960 55.000 0.00 0.00 41.22 3.61
3188 3699 7.939039 ACAGACAAACCATTTCTTATCTGAAGA 59.061 33.333 5.01 0.00 36.63 2.87
3201 3712 5.343307 AGAAGCAAAACAGACAAACCATT 57.657 34.783 0.00 0.00 0.00 3.16
3202 3713 5.105392 TGAAGAAGCAAAACAGACAAACCAT 60.105 36.000 0.00 0.00 0.00 3.55
3203 3714 4.219507 TGAAGAAGCAAAACAGACAAACCA 59.780 37.500 0.00 0.00 0.00 3.67
3204 3715 4.743493 TGAAGAAGCAAAACAGACAAACC 58.257 39.130 0.00 0.00 0.00 3.27
3205 3716 5.640732 TCTGAAGAAGCAAAACAGACAAAC 58.359 37.500 0.00 0.00 33.57 2.93
3206 3717 5.895636 TCTGAAGAAGCAAAACAGACAAA 57.104 34.783 0.00 0.00 33.57 2.83
3207 3718 7.498900 TCTTATCTGAAGAAGCAAAACAGACAA 59.501 33.333 0.00 0.00 39.76 3.18
3208 3719 6.992123 TCTTATCTGAAGAAGCAAAACAGACA 59.008 34.615 0.00 0.00 39.76 3.41
3209 3720 7.426929 TCTTATCTGAAGAAGCAAAACAGAC 57.573 36.000 0.00 0.00 39.76 3.51
3210 3721 8.450578 TTTCTTATCTGAAGAAGCAAAACAGA 57.549 30.769 0.00 0.00 40.88 3.41
3211 3722 9.125906 CATTTCTTATCTGAAGAAGCAAAACAG 57.874 33.333 0.51 0.00 37.54 3.16
3212 3723 8.084073 CCATTTCTTATCTGAAGAAGCAAAACA 58.916 33.333 0.51 0.00 37.54 2.83
3213 3724 8.084684 ACCATTTCTTATCTGAAGAAGCAAAAC 58.915 33.333 0.51 0.00 37.54 2.43
3214 3725 8.181904 ACCATTTCTTATCTGAAGAAGCAAAA 57.818 30.769 0.51 0.00 37.54 2.44
3215 3726 7.765695 ACCATTTCTTATCTGAAGAAGCAAA 57.234 32.000 0.51 2.38 37.54 3.68
3216 3727 7.765695 AACCATTTCTTATCTGAAGAAGCAA 57.234 32.000 0.51 0.00 37.54 3.91
3217 3728 7.231317 ACAAACCATTTCTTATCTGAAGAAGCA 59.769 33.333 0.51 0.00 37.54 3.91
3218 3729 7.597386 ACAAACCATTTCTTATCTGAAGAAGC 58.403 34.615 0.51 0.00 37.54 3.86
3219 3730 8.239998 GGACAAACCATTTCTTATCTGAAGAAG 58.760 37.037 0.51 0.00 36.83 2.85
3220 3731 7.094805 CGGACAAACCATTTCTTATCTGAAGAA 60.095 37.037 0.00 0.00 38.90 2.52
3221 3732 6.371548 CGGACAAACCATTTCTTATCTGAAGA 59.628 38.462 0.00 0.00 38.90 2.87
3222 3733 6.149474 ACGGACAAACCATTTCTTATCTGAAG 59.851 38.462 0.00 0.00 38.90 3.02
3223 3734 6.001460 ACGGACAAACCATTTCTTATCTGAA 58.999 36.000 0.00 0.00 38.90 3.02
3224 3735 5.556915 ACGGACAAACCATTTCTTATCTGA 58.443 37.500 0.00 0.00 38.90 3.27
3225 3736 5.880054 ACGGACAAACCATTTCTTATCTG 57.120 39.130 0.00 0.00 38.90 2.90
3226 3737 6.894339 AAACGGACAAACCATTTCTTATCT 57.106 33.333 0.00 0.00 38.90 1.98
3227 3738 6.128929 GCAAAACGGACAAACCATTTCTTATC 60.129 38.462 0.00 0.00 32.62 1.75
3228 3739 5.694458 GCAAAACGGACAAACCATTTCTTAT 59.306 36.000 0.00 0.00 32.62 1.73
3229 3740 5.044558 GCAAAACGGACAAACCATTTCTTA 58.955 37.500 0.00 0.00 32.62 2.10
3230 3741 3.868661 GCAAAACGGACAAACCATTTCTT 59.131 39.130 0.00 0.00 32.62 2.52
3231 3742 3.453424 GCAAAACGGACAAACCATTTCT 58.547 40.909 0.00 0.00 32.62 2.52
3232 3743 2.542178 GGCAAAACGGACAAACCATTTC 59.458 45.455 0.00 0.00 32.62 2.17
3233 3744 2.169561 AGGCAAAACGGACAAACCATTT 59.830 40.909 0.00 0.00 35.45 2.32
3234 3745 1.760029 AGGCAAAACGGACAAACCATT 59.240 42.857 0.00 0.00 38.90 3.16
3238 3749 1.923864 CAACAGGCAAAACGGACAAAC 59.076 47.619 0.00 0.00 0.00 2.93
3245 3756 0.929824 CTCGCACAACAGGCAAAACG 60.930 55.000 0.00 0.00 0.00 3.60
3256 3767 1.200252 GTACTCTCTGCTCTCGCACAA 59.800 52.381 0.00 0.00 42.25 3.33
3261 3772 1.939934 CTCCAGTACTCTCTGCTCTCG 59.060 57.143 0.00 0.00 34.47 4.04
3263 3774 1.005332 TGCTCCAGTACTCTCTGCTCT 59.995 52.381 0.00 0.00 34.47 4.09
3276 3787 1.964891 CACTGCCAGTGTGCTCCAG 60.965 63.158 16.78 0.00 41.19 3.86
3277 3788 2.111669 CACTGCCAGTGTGCTCCA 59.888 61.111 16.78 0.00 41.19 3.86
3294 3805 2.024319 ACTCTGCGCAAACTCGAGC 61.024 57.895 19.96 0.00 0.00 5.03
3315 3826 2.123939 CAGCACCCACCCACACAA 60.124 61.111 0.00 0.00 0.00 3.33
3322 3833 2.917227 CCCAAACCAGCACCCACC 60.917 66.667 0.00 0.00 0.00 4.61
3324 3835 4.932105 GCCCCAAACCAGCACCCA 62.932 66.667 0.00 0.00 0.00 4.51
3371 3882 1.073923 TGTTCCCTCTTTTGCTCTCCC 59.926 52.381 0.00 0.00 0.00 4.30
3376 3887 0.108585 TCGCTGTTCCCTCTTTTGCT 59.891 50.000 0.00 0.00 0.00 3.91
3377 3888 0.519077 CTCGCTGTTCCCTCTTTTGC 59.481 55.000 0.00 0.00 0.00 3.68
3379 3890 1.002544 CCTCTCGCTGTTCCCTCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
3435 3961 0.320683 TCTGGACTTGTGATGCCACG 60.321 55.000 0.00 0.00 46.06 4.94
3436 3962 1.537202 GTTCTGGACTTGTGATGCCAC 59.463 52.381 0.00 0.00 43.46 5.01
3439 3965 2.227388 CCTTGTTCTGGACTTGTGATGC 59.773 50.000 0.00 0.00 0.00 3.91
3448 3974 1.598130 ACGCAGCCTTGTTCTGGAC 60.598 57.895 0.00 0.00 32.41 4.02
3497 4023 2.498078 GAGAGAAAGTGGTAGGAGTGGG 59.502 54.545 0.00 0.00 0.00 4.61
3499 4025 3.127895 CGAGAGAGAAAGTGGTAGGAGTG 59.872 52.174 0.00 0.00 0.00 3.51
3500 4026 3.349022 CGAGAGAGAAAGTGGTAGGAGT 58.651 50.000 0.00 0.00 0.00 3.85
3501 4027 2.098443 GCGAGAGAGAAAGTGGTAGGAG 59.902 54.545 0.00 0.00 0.00 3.69
3503 4029 1.202200 CGCGAGAGAGAAAGTGGTAGG 60.202 57.143 0.00 0.00 0.00 3.18
3506 4032 0.039074 CACGCGAGAGAGAAAGTGGT 60.039 55.000 15.93 0.00 33.96 4.16
3509 4035 0.244994 ATGCACGCGAGAGAGAAAGT 59.755 50.000 15.93 0.00 33.96 2.66
3519 4045 3.418913 CGGTCCAAATGCACGCGA 61.419 61.111 15.93 0.00 0.00 5.87
3520 4046 4.459331 CCGGTCCAAATGCACGCG 62.459 66.667 3.53 3.53 0.00 6.01
3523 4050 1.463674 ATTCTCCGGTCCAAATGCAC 58.536 50.000 0.00 0.00 0.00 4.57
3549 4087 3.061322 CGTACAAATTCCAGGAACACGA 58.939 45.455 3.18 0.00 0.00 4.35
3570 4116 3.188048 CCATCACAAGAGCTTCAGAACAC 59.812 47.826 0.00 0.00 0.00 3.32
3577 4123 3.272574 TCCATCCATCACAAGAGCTTC 57.727 47.619 0.00 0.00 0.00 3.86
3581 4127 4.072839 CCATGATCCATCCATCACAAGAG 58.927 47.826 0.00 0.00 35.57 2.85
3648 4202 8.449625 ACCATAGAGCCTTAGAGAGAATAACTA 58.550 37.037 0.00 0.00 0.00 2.24
3660 4214 4.520874 TCAATCGAGACCATAGAGCCTTAG 59.479 45.833 0.00 0.00 0.00 2.18
3663 4219 2.950781 TCAATCGAGACCATAGAGCCT 58.049 47.619 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.