Multiple sequence alignment - TraesCS6A01G392400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G392400 chr6A 100.000 4239 0 0 963 5201 606969628 606973866 0.000000e+00 7829.0
1 TraesCS6A01G392400 chr6A 100.000 724 0 0 1 724 606968666 606969389 0.000000e+00 1338.0
2 TraesCS6A01G392400 chr6D 91.729 2817 129 50 1003 3776 460698045 460700800 0.000000e+00 3816.0
3 TraesCS6A01G392400 chr6D 91.616 656 30 13 3880 4533 460700884 460701516 0.000000e+00 883.0
4 TraesCS6A01G392400 chr6D 87.654 81 6 3 644 724 460697648 460697724 1.990000e-14 91.6
5 TraesCS6A01G392400 chr6B 91.327 2525 157 32 1996 4477 701872185 701874690 0.000000e+00 3393.0
6 TraesCS6A01G392400 chr6B 89.498 438 33 8 49 482 701870227 701870655 4.580000e-150 542.0
7 TraesCS6A01G392400 chr6B 78.140 1011 106 71 975 1926 701871181 701872135 2.130000e-148 536.0
8 TraesCS6A01G392400 chr6B 89.394 132 11 3 590 720 701870943 701871072 4.170000e-36 163.0
9 TraesCS6A01G392400 chr5D 90.991 666 45 7 4542 5200 481519703 481520360 0.000000e+00 883.0
10 TraesCS6A01G392400 chr7B 90.347 663 49 6 4545 5200 736088498 736089152 0.000000e+00 856.0
11 TraesCS6A01G392400 chr4A 89.474 665 57 5 4542 5200 733886438 733887095 0.000000e+00 828.0
12 TraesCS6A01G392400 chrUn 89.319 646 56 5 4560 5200 49272364 49271727 0.000000e+00 798.0
13 TraesCS6A01G392400 chrUn 89.319 646 56 5 4560 5200 341695197 341695834 0.000000e+00 798.0
14 TraesCS6A01G392400 chrUn 88.700 646 54 11 4561 5200 158072858 158073490 0.000000e+00 771.0
15 TraesCS6A01G392400 chr3B 88.700 646 59 6 4560 5200 5848080 5847444 0.000000e+00 776.0
16 TraesCS6A01G392400 chr3B 88.700 646 54 11 4561 5200 825013386 825014018 0.000000e+00 771.0
17 TraesCS6A01G392400 chr5B 89.752 605 55 4 4601 5200 492108040 492107438 0.000000e+00 767.0
18 TraesCS6A01G392400 chr2A 89.726 438 32 8 49 482 768625143 768625571 9.850000e-152 547.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G392400 chr6A 606968666 606973866 5200 False 4583.500000 7829 100.00000 1 5201 2 chr6A.!!$F1 5200
1 TraesCS6A01G392400 chr6D 460697648 460701516 3868 False 1596.866667 3816 90.33300 644 4533 3 chr6D.!!$F1 3889
2 TraesCS6A01G392400 chr6B 701870227 701874690 4463 False 1158.500000 3393 87.08975 49 4477 4 chr6B.!!$F1 4428
3 TraesCS6A01G392400 chr5D 481519703 481520360 657 False 883.000000 883 90.99100 4542 5200 1 chr5D.!!$F1 658
4 TraesCS6A01G392400 chr7B 736088498 736089152 654 False 856.000000 856 90.34700 4545 5200 1 chr7B.!!$F1 655
5 TraesCS6A01G392400 chr4A 733886438 733887095 657 False 828.000000 828 89.47400 4542 5200 1 chr4A.!!$F1 658
6 TraesCS6A01G392400 chrUn 49271727 49272364 637 True 798.000000 798 89.31900 4560 5200 1 chrUn.!!$R1 640
7 TraesCS6A01G392400 chrUn 341695197 341695834 637 False 798.000000 798 89.31900 4560 5200 1 chrUn.!!$F2 640
8 TraesCS6A01G392400 chrUn 158072858 158073490 632 False 771.000000 771 88.70000 4561 5200 1 chrUn.!!$F1 639
9 TraesCS6A01G392400 chr3B 5847444 5848080 636 True 776.000000 776 88.70000 4560 5200 1 chr3B.!!$R1 640
10 TraesCS6A01G392400 chr3B 825013386 825014018 632 False 771.000000 771 88.70000 4561 5200 1 chr3B.!!$F1 639
11 TraesCS6A01G392400 chr5B 492107438 492108040 602 True 767.000000 767 89.75200 4601 5200 1 chr5B.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 907 0.034960 GCTTCTGAAACCTCTCCCCC 60.035 60.0 0.00 0.00 0.00 5.40 F
1315 1559 0.179056 CAACTACCTACCCGCCCATG 60.179 60.0 0.00 0.00 0.00 3.66 F
1619 1922 0.320771 ACGCTTGATCCACAGACACC 60.321 55.0 0.00 0.00 0.00 4.16 F
2026 2339 0.454600 CTCACTGCACATTCCCATGC 59.545 55.0 0.00 0.00 42.40 4.06 F
3531 3877 0.250467 TCAAGTCTGCTGGCCTTGAC 60.250 55.0 16.75 7.08 39.58 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2377 0.521291 ACCACAACATCGCCGATTTG 59.479 50.000 15.53 15.53 0.00 2.32 R
2286 2603 1.068588 CGGTTCACAGTTCTCACAGGA 59.931 52.381 0.00 0.00 0.00 3.86 R
3513 3859 0.535780 TGTCAAGGCCAGCAGACTTG 60.536 55.000 14.57 14.57 42.14 3.16 R
3808 4169 0.796927 GCGGTAGAACTTCTGTTGGC 59.203 55.000 1.17 0.00 36.39 4.52 R
5044 5436 0.594602 CCACACGACTAAGACACCGA 59.405 55.000 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.664851 CTCGCCGGTGAAGCACAA 60.665 61.111 20.06 0.00 35.86 3.33
21 22 2.203084 TCGCCGGTGAAGCACAAA 60.203 55.556 17.09 0.00 35.86 2.83
22 23 1.781025 CTCGCCGGTGAAGCACAAAA 61.781 55.000 20.06 0.00 35.86 2.44
23 24 1.064946 CGCCGGTGAAGCACAAAAA 59.935 52.632 10.20 0.00 35.86 1.94
24 25 0.934436 CGCCGGTGAAGCACAAAAAG 60.934 55.000 10.20 0.00 35.86 2.27
25 26 0.102300 GCCGGTGAAGCACAAAAAGT 59.898 50.000 1.90 0.00 35.86 2.66
26 27 1.470805 GCCGGTGAAGCACAAAAAGTT 60.471 47.619 1.90 0.00 35.86 2.66
27 28 2.223618 GCCGGTGAAGCACAAAAAGTTA 60.224 45.455 1.90 0.00 35.86 2.24
28 29 3.552068 GCCGGTGAAGCACAAAAAGTTAT 60.552 43.478 1.90 0.00 35.86 1.89
29 30 4.320641 GCCGGTGAAGCACAAAAAGTTATA 60.321 41.667 1.90 0.00 35.86 0.98
30 31 5.621329 GCCGGTGAAGCACAAAAAGTTATAT 60.621 40.000 1.90 0.00 35.86 0.86
31 32 6.403855 GCCGGTGAAGCACAAAAAGTTATATA 60.404 38.462 1.90 0.00 35.86 0.86
32 33 7.681065 GCCGGTGAAGCACAAAAAGTTATATAT 60.681 37.037 1.90 0.00 35.86 0.86
33 34 8.832521 CCGGTGAAGCACAAAAAGTTATATATA 58.167 33.333 0.00 0.00 35.86 0.86
139 143 7.351981 TGATATATCGGAAGCGTTTCATTTTG 58.648 34.615 14.20 0.00 34.90 2.44
152 156 6.639212 CGTTTCATTTTGTTCTTTCATGTGG 58.361 36.000 0.00 0.00 0.00 4.17
177 181 0.672401 GTTTCCGCCCGATGACTTGA 60.672 55.000 0.00 0.00 0.00 3.02
189 193 4.382470 CCGATGACTTGACTTCATCTTCCT 60.382 45.833 9.91 0.00 44.95 3.36
205 209 0.253044 TCCTCCAAATCTTGCTCCGG 59.747 55.000 0.00 0.00 0.00 5.14
211 215 4.537433 ATCTTGCTCCGGCGGCTC 62.537 66.667 23.83 15.62 42.25 4.70
246 251 2.124695 GCCGAGGGCGAAATCCTT 60.125 61.111 0.00 0.00 39.62 3.36
252 257 1.449601 GGGCGAAATCCTTGCTCGA 60.450 57.895 0.00 0.00 34.52 4.04
254 259 1.706287 GGCGAAATCCTTGCTCGACC 61.706 60.000 0.00 0.00 34.45 4.79
255 260 1.019278 GCGAAATCCTTGCTCGACCA 61.019 55.000 0.00 0.00 34.52 4.02
256 261 1.656652 CGAAATCCTTGCTCGACCAT 58.343 50.000 0.00 0.00 34.52 3.55
257 262 2.009774 CGAAATCCTTGCTCGACCATT 58.990 47.619 0.00 0.00 34.52 3.16
268 273 2.544685 CTCGACCATTCTTTCGATGCT 58.455 47.619 0.00 0.00 43.03 3.79
311 316 4.840005 CGCCCCCTTCTCGGAAGC 62.840 72.222 7.82 0.00 33.16 3.86
330 335 2.903855 CTGCCATGGCCGTCATCC 60.904 66.667 33.44 4.41 41.09 3.51
336 341 3.385749 ATGGCCGTCATCCGTGTCC 62.386 63.158 0.00 0.00 33.66 4.02
348 353 1.513158 CGTGTCCCTCTTCGAGCAT 59.487 57.895 0.00 0.00 0.00 3.79
393 398 0.518636 CCAATGTTGGCTCAGTCACG 59.481 55.000 0.00 0.00 42.21 4.35
394 399 1.229428 CAATGTTGGCTCAGTCACGT 58.771 50.000 0.00 0.00 0.00 4.49
395 400 1.603802 CAATGTTGGCTCAGTCACGTT 59.396 47.619 0.00 0.00 0.00 3.99
396 401 1.229428 ATGTTGGCTCAGTCACGTTG 58.771 50.000 0.00 0.00 0.00 4.10
397 402 0.813610 TGTTGGCTCAGTCACGTTGG 60.814 55.000 0.00 0.00 0.00 3.77
398 403 0.814010 GTTGGCTCAGTCACGTTGGT 60.814 55.000 0.00 0.00 0.00 3.67
421 426 2.672098 TGTTTTGGGCTTGCTTCCTAA 58.328 42.857 0.00 0.00 0.00 2.69
440 445 2.504519 GCGGGCGAGTTTAGGGAT 59.495 61.111 0.00 0.00 0.00 3.85
459 464 1.489481 TCGAGCATCCCATGTCTCTT 58.511 50.000 0.00 0.00 33.90 2.85
467 472 0.745845 CCCATGTCTCTTTGCTCCGG 60.746 60.000 0.00 0.00 0.00 5.14
468 473 0.250234 CCATGTCTCTTTGCTCCGGA 59.750 55.000 2.93 2.93 0.00 5.14
477 482 0.035152 TTTGCTCCGGACATCATGCT 60.035 50.000 0.00 0.00 0.00 3.79
482 487 1.153568 CCGGACATCATGCTCACGT 60.154 57.895 0.00 0.00 0.00 4.49
485 490 1.565305 GGACATCATGCTCACGTCTC 58.435 55.000 0.00 0.00 0.00 3.36
486 491 1.135915 GGACATCATGCTCACGTCTCT 59.864 52.381 0.00 0.00 0.00 3.10
489 494 4.039151 ACATCATGCTCACGTCTCTTAG 57.961 45.455 0.00 0.00 0.00 2.18
490 495 3.445450 ACATCATGCTCACGTCTCTTAGT 59.555 43.478 0.00 0.00 0.00 2.24
493 498 4.486090 TCATGCTCACGTCTCTTAGTTTC 58.514 43.478 0.00 0.00 0.00 2.78
494 499 4.218635 TCATGCTCACGTCTCTTAGTTTCT 59.781 41.667 0.00 0.00 0.00 2.52
497 502 4.202121 TGCTCACGTCTCTTAGTTTCTTGT 60.202 41.667 0.00 0.00 0.00 3.16
498 503 5.009310 TGCTCACGTCTCTTAGTTTCTTGTA 59.991 40.000 0.00 0.00 0.00 2.41
499 504 5.342791 GCTCACGTCTCTTAGTTTCTTGTAC 59.657 44.000 0.00 0.00 0.00 2.90
500 505 6.381481 TCACGTCTCTTAGTTTCTTGTACA 57.619 37.500 0.00 0.00 0.00 2.90
502 507 6.039047 TCACGTCTCTTAGTTTCTTGTACAGT 59.961 38.462 0.00 0.00 0.00 3.55
504 509 6.039047 ACGTCTCTTAGTTTCTTGTACAGTGA 59.961 38.462 0.00 0.00 0.00 3.41
506 511 7.434307 CGTCTCTTAGTTTCTTGTACAGTGAAA 59.566 37.037 16.85 16.85 0.00 2.69
508 513 9.261180 TCTCTTAGTTTCTTGTACAGTGAAATG 57.739 33.333 20.99 14.53 33.20 2.32
509 514 9.261180 CTCTTAGTTTCTTGTACAGTGAAATGA 57.739 33.333 20.99 16.57 33.20 2.57
510 515 9.778741 TCTTAGTTTCTTGTACAGTGAAATGAT 57.221 29.630 20.99 15.21 33.20 2.45
513 518 8.018677 AGTTTCTTGTACAGTGAAATGATACG 57.981 34.615 20.99 0.00 33.20 3.06
514 519 6.403333 TTCTTGTACAGTGAAATGATACGC 57.597 37.500 0.00 0.00 0.00 4.42
515 520 5.474825 TCTTGTACAGTGAAATGATACGCA 58.525 37.500 0.00 0.00 0.00 5.24
516 521 5.929415 TCTTGTACAGTGAAATGATACGCAA 59.071 36.000 0.00 0.00 0.00 4.85
518 523 3.747099 ACAGTGAAATGATACGCAAGC 57.253 42.857 0.00 0.00 45.62 4.01
519 524 3.073678 ACAGTGAAATGATACGCAAGCA 58.926 40.909 0.00 0.00 45.62 3.91
520 525 3.501828 ACAGTGAAATGATACGCAAGCAA 59.498 39.130 0.00 0.00 45.62 3.91
521 526 4.023279 ACAGTGAAATGATACGCAAGCAAA 60.023 37.500 0.00 0.00 45.62 3.68
522 527 4.321745 CAGTGAAATGATACGCAAGCAAAC 59.678 41.667 0.00 0.00 45.62 2.93
523 528 4.216257 AGTGAAATGATACGCAAGCAAACT 59.784 37.500 0.00 0.00 45.62 2.66
524 529 4.917415 GTGAAATGATACGCAAGCAAACTT 59.083 37.500 0.00 0.00 45.62 2.66
525 530 5.402270 GTGAAATGATACGCAAGCAAACTTT 59.598 36.000 0.00 0.00 45.62 2.66
526 531 5.401972 TGAAATGATACGCAAGCAAACTTTG 59.598 36.000 0.00 0.00 45.62 2.77
527 532 3.980646 TGATACGCAAGCAAACTTTGT 57.019 38.095 3.48 0.00 45.62 2.83
529 534 3.066064 TGATACGCAAGCAAACTTTGTGT 59.934 39.130 8.88 8.88 45.62 3.72
530 535 4.273724 TGATACGCAAGCAAACTTTGTGTA 59.726 37.500 12.11 12.11 45.62 2.90
532 537 3.628017 ACGCAAGCAAACTTTGTGTATC 58.372 40.909 3.48 0.00 45.62 2.24
533 538 2.979813 CGCAAGCAAACTTTGTGTATCC 59.020 45.455 3.48 0.00 32.29 2.59
536 541 1.196808 AGCAAACTTTGTGTATCCGCG 59.803 47.619 0.00 0.00 0.00 6.46
539 544 0.322322 AACTTTGTGTATCCGCGGGA 59.678 50.000 27.83 12.89 35.55 5.14
541 546 1.270947 ACTTTGTGTATCCGCGGGAAA 60.271 47.619 27.83 6.34 34.34 3.13
543 548 1.893544 TTGTGTATCCGCGGGAAAAA 58.106 45.000 27.83 5.39 34.34 1.94
544 549 1.444836 TGTGTATCCGCGGGAAAAAG 58.555 50.000 27.83 0.00 34.34 2.27
545 550 0.098200 GTGTATCCGCGGGAAAAAGC 59.902 55.000 27.83 9.37 34.34 3.51
546 551 0.321741 TGTATCCGCGGGAAAAAGCA 60.322 50.000 27.83 11.91 34.34 3.91
547 552 1.021968 GTATCCGCGGGAAAAAGCAT 58.978 50.000 27.83 11.31 34.34 3.79
551 642 0.098728 CCGCGGGAAAAAGCATAGTG 59.901 55.000 20.10 0.00 0.00 2.74
560 651 6.299141 GGGAAAAAGCATAGTGGATCTGATA 58.701 40.000 0.00 0.00 0.00 2.15
591 776 3.329814 AGAAAAATTCCACGGAGGGTACT 59.670 43.478 0.00 0.00 38.24 2.73
603 788 1.409427 GAGGGTACTTCTGATCCGGTG 59.591 57.143 0.00 0.00 0.00 4.94
608 793 2.751166 ACTTCTGATCCGGTGTGAAG 57.249 50.000 19.41 19.41 39.72 3.02
613 798 2.047274 ATCCGGTGTGAAGGTGCG 60.047 61.111 0.00 0.00 0.00 5.34
614 799 4.980805 TCCGGTGTGAAGGTGCGC 62.981 66.667 0.00 0.00 0.00 6.09
618 803 4.666532 GTGTGAAGGTGCGCGTGC 62.667 66.667 15.48 15.48 43.20 5.34
622 807 4.166011 GAAGGTGCGCGTGCCATC 62.166 66.667 19.87 14.81 41.78 3.51
646 831 1.485514 CGACGTACCTTGCACAACG 59.514 57.895 7.52 7.52 40.99 4.10
666 852 1.408702 GTCTACGGGGTGCGGTAATTA 59.591 52.381 0.00 0.00 0.00 1.40
707 893 1.598130 AACAGCCGCTTTCGCTTCT 60.598 52.632 0.00 0.00 0.00 2.85
710 896 1.301716 AGCCGCTTTCGCTTCTGAA 60.302 52.632 0.00 0.00 0.00 3.02
711 897 0.884704 AGCCGCTTTCGCTTCTGAAA 60.885 50.000 0.00 0.00 36.48 2.69
713 899 0.110192 CCGCTTTCGCTTCTGAAACC 60.110 55.000 0.00 0.00 34.34 3.27
714 900 0.868406 CGCTTTCGCTTCTGAAACCT 59.132 50.000 0.00 0.00 34.34 3.50
715 901 1.136224 CGCTTTCGCTTCTGAAACCTC 60.136 52.381 0.00 0.00 34.34 3.85
716 902 2.147150 GCTTTCGCTTCTGAAACCTCT 58.853 47.619 0.00 0.00 34.34 3.69
719 905 0.608640 TCGCTTCTGAAACCTCTCCC 59.391 55.000 0.00 0.00 0.00 4.30
720 906 0.391793 CGCTTCTGAAACCTCTCCCC 60.392 60.000 0.00 0.00 0.00 4.81
721 907 0.034960 GCTTCTGAAACCTCTCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
723 909 1.988846 CTTCTGAAACCTCTCCCCCTT 59.011 52.381 0.00 0.00 0.00 3.95
1066 1294 4.559063 CCTCCGCATCCAGCCAGG 62.559 72.222 0.00 0.00 41.38 4.45
1088 1316 2.234143 CCAGCTATCCGTGAGATCTCA 58.766 52.381 21.67 21.67 36.33 3.27
1091 1319 3.758023 CAGCTATCCGTGAGATCTCATCT 59.242 47.826 27.51 14.68 42.18 2.90
1115 1351 3.477530 CCGTGATTTTATCCCCTCTTCC 58.522 50.000 0.00 0.00 0.00 3.46
1297 1541 2.792222 CCCCCTCCTTCCCTACCA 59.208 66.667 0.00 0.00 0.00 3.25
1315 1559 0.179056 CAACTACCTACCCGCCCATG 60.179 60.000 0.00 0.00 0.00 3.66
1316 1560 0.619543 AACTACCTACCCGCCCATGT 60.620 55.000 0.00 0.00 0.00 3.21
1491 1784 0.852842 TCAAATATGCAGGGGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
1492 1785 0.852842 CAAATATGCAGGGGAGGGGA 59.147 55.000 0.00 0.00 0.00 4.81
1497 1790 2.367512 GCAGGGGAGGGGACTGAT 60.368 66.667 0.00 0.00 44.43 2.90
1580 1879 2.414806 AGCATGCTAGATGATCTTGCG 58.585 47.619 21.21 10.76 45.84 4.85
1619 1922 0.320771 ACGCTTGATCCACAGACACC 60.321 55.000 0.00 0.00 0.00 4.16
1657 1960 1.135139 GATCTTGTACTCTGCCAGCGA 59.865 52.381 0.00 0.00 0.00 4.93
1688 1991 5.627499 TTATCACAGTTGCTGTCCAAATC 57.373 39.130 0.00 0.00 43.43 2.17
1694 1997 3.067106 AGTTGCTGTCCAAATCGTGTAG 58.933 45.455 0.00 0.00 34.68 2.74
1710 2019 3.427773 CGTGTAGAAGCTAGGTTCTGGAC 60.428 52.174 36.06 29.53 37.36 4.02
1734 2043 1.587547 GGAGCGCTCTTCTTTATGGG 58.412 55.000 34.46 0.00 0.00 4.00
1763 2072 3.485947 GCTAATGCAAATCACGGAACA 57.514 42.857 0.00 0.00 39.41 3.18
1771 2080 4.142622 TGCAAATCACGGAACAGAATGATC 60.143 41.667 0.00 0.00 39.69 2.92
1773 2082 5.449588 GCAAATCACGGAACAGAATGATCAT 60.450 40.000 1.18 1.18 40.00 2.45
1775 2084 7.350467 CAAATCACGGAACAGAATGATCATAG 58.650 38.462 9.04 4.97 40.00 2.23
1776 2085 5.852282 TCACGGAACAGAATGATCATAGA 57.148 39.130 9.04 0.00 40.00 1.98
1777 2086 6.220726 TCACGGAACAGAATGATCATAGAA 57.779 37.500 9.04 0.00 40.00 2.10
1778 2087 6.820335 TCACGGAACAGAATGATCATAGAAT 58.180 36.000 9.04 0.00 40.00 2.40
1786 2098 5.064834 CAGAATGATCATAGAATGGATGCCG 59.935 44.000 9.04 0.00 39.69 5.69
1886 2199 2.035783 GGGGGCTTCAAGGACACC 59.964 66.667 0.00 0.00 0.00 4.16
1910 2223 0.616679 CGGAGGACCTTCTTACCCCA 60.617 60.000 0.00 0.00 0.00 4.96
1930 2243 3.882888 CCAGTTCTCAAGGTTTGCACTTA 59.117 43.478 0.00 0.00 0.00 2.24
1943 2256 2.295253 GCACTTAGCATGTACTCCGT 57.705 50.000 0.00 0.00 44.79 4.69
1944 2257 3.431922 GCACTTAGCATGTACTCCGTA 57.568 47.619 0.00 0.00 44.79 4.02
1945 2258 3.114065 GCACTTAGCATGTACTCCGTAC 58.886 50.000 0.00 0.00 44.79 3.67
1946 2259 3.703420 CACTTAGCATGTACTCCGTACC 58.297 50.000 0.00 0.00 38.14 3.34
1948 2261 3.631227 ACTTAGCATGTACTCCGTACCTC 59.369 47.826 0.00 0.00 38.14 3.85
1950 2263 2.736347 AGCATGTACTCCGTACCTCTT 58.264 47.619 0.00 0.00 38.14 2.85
1951 2264 3.097614 AGCATGTACTCCGTACCTCTTT 58.902 45.455 0.00 0.00 38.14 2.52
1952 2265 3.119101 AGCATGTACTCCGTACCTCTTTG 60.119 47.826 0.00 0.00 38.14 2.77
1954 2267 4.142315 GCATGTACTCCGTACCTCTTTGTA 60.142 45.833 0.00 0.00 38.14 2.41
1955 2268 5.338365 CATGTACTCCGTACCTCTTTGTAC 58.662 45.833 0.00 0.00 38.14 2.90
1956 2269 4.397420 TGTACTCCGTACCTCTTTGTACA 58.603 43.478 0.00 0.00 40.91 2.90
1957 2270 4.826733 TGTACTCCGTACCTCTTTGTACAA 59.173 41.667 3.59 3.59 40.91 2.41
1958 2271 4.942761 ACTCCGTACCTCTTTGTACAAA 57.057 40.909 19.53 19.53 40.91 2.83
1959 2272 5.479124 ACTCCGTACCTCTTTGTACAAAT 57.521 39.130 20.83 9.21 40.91 2.32
1961 2274 7.179076 ACTCCGTACCTCTTTGTACAAATAT 57.821 36.000 20.83 9.60 40.91 1.28
1962 2275 8.297470 ACTCCGTACCTCTTTGTACAAATATA 57.703 34.615 20.83 9.25 40.91 0.86
1963 2276 8.921205 ACTCCGTACCTCTTTGTACAAATATAT 58.079 33.333 20.83 10.24 40.91 0.86
1970 2283 8.491134 ACCTCTTTGTACAAATATATACTGGCA 58.509 33.333 20.83 0.00 0.00 4.92
1972 2285 9.325198 CTCTTTGTACAAATATATACTGGCACA 57.675 33.333 20.83 0.00 0.00 4.57
1984 2297 1.202758 ACTGGCACATTCAAACCGAGA 60.203 47.619 0.00 0.00 38.20 4.04
1985 2298 1.466167 CTGGCACATTCAAACCGAGAG 59.534 52.381 0.00 0.00 38.20 3.20
2026 2339 0.454600 CTCACTGCACATTCCCATGC 59.545 55.000 0.00 0.00 42.40 4.06
2075 2388 1.524621 CCCAGCTCAAATCGGCGAT 60.525 57.895 18.14 18.14 0.00 4.58
2120 2433 1.016130 CAGGTTCTCAGCGTGCGATT 61.016 55.000 0.00 0.00 0.00 3.34
2147 2460 1.028868 GGACTGCATCTCTGTTGGCC 61.029 60.000 0.00 0.00 0.00 5.36
2172 2485 5.652452 GGAATTCCTGGTAAATACTGTGCTT 59.348 40.000 17.73 0.00 0.00 3.91
2186 2499 9.590451 AAATACTGTGCTTTCAAAATCATATGG 57.410 29.630 2.13 0.00 0.00 2.74
2187 2500 6.839124 ACTGTGCTTTCAAAATCATATGGA 57.161 33.333 2.13 0.00 0.00 3.41
2188 2501 6.860080 ACTGTGCTTTCAAAATCATATGGAG 58.140 36.000 2.13 0.00 0.00 3.86
2192 2505 8.407832 TGTGCTTTCAAAATCATATGGAGTATG 58.592 33.333 2.13 0.00 41.32 2.39
2267 2580 9.384764 CGATTTCTACTTCCTTAATTTCCTCTT 57.615 33.333 0.00 0.00 0.00 2.85
2286 2603 1.673477 TGCTGATGCAGAGACCGTT 59.327 52.632 0.00 0.00 45.31 4.44
2390 2707 9.923143 TTTCTATGACATCGGTAATTACTATGG 57.077 33.333 23.45 12.85 0.00 2.74
2735 3058 1.352083 AAGGCTGCTGTGAGTTCCTA 58.648 50.000 0.00 0.00 0.00 2.94
2875 3198 7.067494 CCGGAAAGTTCAAGGATGAGATTATTT 59.933 37.037 0.00 0.00 36.78 1.40
2964 3288 9.270640 GAACTCAGAAGTATTTGATATGAGCAT 57.729 33.333 0.00 0.00 36.92 3.79
2965 3289 9.624373 AACTCAGAAGTATTTGATATGAGCATT 57.376 29.630 0.00 0.00 36.92 3.56
2966 3290 9.053840 ACTCAGAAGTATTTGATATGAGCATTG 57.946 33.333 0.00 0.00 36.92 2.82
2967 3291 9.269453 CTCAGAAGTATTTGATATGAGCATTGA 57.731 33.333 0.00 0.00 0.00 2.57
2968 3292 9.788889 TCAGAAGTATTTGATATGAGCATTGAT 57.211 29.630 0.00 0.00 0.00 2.57
2970 3294 9.788889 AGAAGTATTTGATATGAGCATTGATCA 57.211 29.630 7.12 7.12 30.86 2.92
3380 3726 9.143631 GGTTTTCTGAATGGTATTTGAGAAATG 57.856 33.333 0.00 0.00 38.20 2.32
3381 3727 9.696917 GTTTTCTGAATGGTATTTGAGAAATGT 57.303 29.630 0.00 0.00 38.20 2.71
3513 3859 2.176273 CGCCATACCTGCTGCAGTC 61.176 63.158 26.41 8.39 0.00 3.51
3531 3877 0.250467 TCAAGTCTGCTGGCCTTGAC 60.250 55.000 16.75 7.08 39.58 3.18
3561 3907 8.048534 ACGACATTGATCTCTTTGAATTGAAT 57.951 30.769 0.00 0.00 0.00 2.57
3591 3937 1.525995 AGTTGTCACAACCCCTGCG 60.526 57.895 17.36 0.00 0.00 5.18
3600 3946 1.828595 ACAACCCCTGCGTTTTTCTTT 59.171 42.857 0.00 0.00 0.00 2.52
3601 3947 3.025262 ACAACCCCTGCGTTTTTCTTTA 58.975 40.909 0.00 0.00 0.00 1.85
3602 3948 3.639561 ACAACCCCTGCGTTTTTCTTTAT 59.360 39.130 0.00 0.00 0.00 1.40
3608 3954 5.163754 CCCCTGCGTTTTTCTTTATCTAGTG 60.164 44.000 0.00 0.00 0.00 2.74
3633 3980 2.672098 ACAATTGTTGGCACCCTGTTA 58.328 42.857 4.92 0.00 34.12 2.41
3714 4061 2.750301 GGTCAAAGGTGAACGTGAAC 57.250 50.000 0.00 0.00 34.87 3.18
3747 4094 0.251077 CTATGGGGCATCCTCTTGGC 60.251 60.000 0.00 0.00 41.20 4.52
3761 4108 1.539388 TCTTGGCGCAACAGGTAATTG 59.461 47.619 10.83 0.00 0.00 2.32
3763 4110 1.832883 TGGCGCAACAGGTAATTGAT 58.167 45.000 10.83 0.00 0.00 2.57
3764 4111 2.166829 TGGCGCAACAGGTAATTGATT 58.833 42.857 10.83 0.00 0.00 2.57
3776 4123 6.127814 ACAGGTAATTGATTGAACATCTGCTG 60.128 38.462 0.00 0.00 0.00 4.41
3777 4124 5.948162 AGGTAATTGATTGAACATCTGCTGT 59.052 36.000 0.00 0.00 40.84 4.40
3787 4134 4.989279 AACATCTGCTGTTGTTCACTTT 57.011 36.364 12.68 0.00 46.37 2.66
3788 4135 4.989279 ACATCTGCTGTTGTTCACTTTT 57.011 36.364 1.77 0.00 32.90 2.27
3801 4162 4.709397 TGTTCACTTTTGACCTTGGAATGT 59.291 37.500 0.00 0.00 0.00 2.71
3808 4169 2.794103 TGACCTTGGAATGTGATGGTG 58.206 47.619 0.00 0.00 0.00 4.17
3819 4180 1.133823 TGTGATGGTGCCAACAGAAGT 60.134 47.619 1.26 0.00 29.52 3.01
3820 4181 1.956477 GTGATGGTGCCAACAGAAGTT 59.044 47.619 1.26 0.00 38.88 2.66
3823 4184 3.072330 TGATGGTGCCAACAGAAGTTCTA 59.928 43.478 4.74 0.00 35.28 2.10
3825 4186 2.152016 GGTGCCAACAGAAGTTCTACC 58.848 52.381 4.74 4.79 35.28 3.18
3827 4188 0.796927 GCCAACAGAAGTTCTACCGC 59.203 55.000 4.74 1.61 35.28 5.68
3830 4191 2.288825 CCAACAGAAGTTCTACCGCTGA 60.289 50.000 4.74 0.00 35.28 4.26
3848 4211 2.908626 CTGAAAAATAAACTGTCGCCGC 59.091 45.455 0.00 0.00 0.00 6.53
3854 4217 2.588027 TAAACTGTCGCCGCATCATA 57.412 45.000 0.00 0.00 0.00 2.15
3863 4226 1.661178 CGCCGCATCATATGAGCAAAC 60.661 52.381 20.07 11.42 32.57 2.93
3865 4228 2.223548 GCCGCATCATATGAGCAAACAA 60.224 45.455 20.07 0.00 33.07 2.83
3876 4239 5.897377 ATGAGCAAACAATGTACTAACCC 57.103 39.130 0.00 0.00 0.00 4.11
3889 4252 0.391263 CTAACCCGGTGAGCCTGTTC 60.391 60.000 0.00 0.00 32.26 3.18
3890 4253 0.834687 TAACCCGGTGAGCCTGTTCT 60.835 55.000 0.00 0.00 32.26 3.01
3893 4256 0.955919 CCCGGTGAGCCTGTTCTTTC 60.956 60.000 0.00 0.00 0.00 2.62
3901 4265 2.301583 GAGCCTGTTCTTTCTCTCAGGT 59.698 50.000 10.94 0.00 46.23 4.00
4012 4376 1.150135 TCTCCCCTCTGAACTGAACCT 59.850 52.381 0.00 0.00 0.00 3.50
4027 4391 2.029518 CCTCGCTGCTCACACACA 59.970 61.111 0.00 0.00 0.00 3.72
4074 4439 5.584649 GCTGGTAACTGAACATGCTATGTTA 59.415 40.000 12.51 0.00 45.96 2.41
4211 4576 1.871039 TGCAAAGTAGAGGCGTGAAAC 59.129 47.619 0.00 0.00 0.00 2.78
4212 4577 1.197036 GCAAAGTAGAGGCGTGAAACC 59.803 52.381 0.00 0.00 0.00 3.27
4217 4582 1.534163 GTAGAGGCGTGAAACCAAACC 59.466 52.381 0.00 0.00 0.00 3.27
4220 4585 1.135333 GAGGCGTGAAACCAAACCAAA 59.865 47.619 0.00 0.00 0.00 3.28
4246 4625 2.156917 CATCCTCACAAGCAGCAAAGA 58.843 47.619 0.00 0.00 0.00 2.52
4247 4626 2.346766 TCCTCACAAGCAGCAAAGAA 57.653 45.000 0.00 0.00 0.00 2.52
4322 4702 3.744238 AATTTCGTGGGGGACAAAAAG 57.256 42.857 0.00 0.00 0.00 2.27
4436 4818 4.518970 GGTGGAAATGCTCTGTTTTCTACA 59.481 41.667 12.02 0.00 42.03 2.74
4484 4867 1.856629 GTACTGGGGTACACCTGCTA 58.143 55.000 20.17 9.51 45.41 3.49
4497 4880 2.891580 CACCTGCTATATCGGTACTGGT 59.108 50.000 0.85 0.00 33.41 4.00
4503 4886 3.731264 GCTATATCGGTACTGGTCGATGC 60.731 52.174 13.02 6.27 44.47 3.91
4507 4890 0.875908 CGGTACTGGTCGATGCCATG 60.876 60.000 0.00 0.00 37.96 3.66
4522 4905 2.269940 GCCATGTGGGGGTAGATAGAT 58.730 52.381 0.54 0.00 37.04 1.98
4533 4916 3.087781 GGTAGATAGATACCGGACCACC 58.912 54.545 9.46 0.00 36.14 4.61
4534 4917 2.305858 AGATAGATACCGGACCACCC 57.694 55.000 9.46 0.00 0.00 4.61
4543 4926 4.028490 GGACCACCCGATGTGCCA 62.028 66.667 0.07 0.00 44.01 4.92
4717 5104 7.814587 GCTCTCGTAGTTTAGGTTTTTAGGTTA 59.185 37.037 0.00 0.00 0.00 2.85
4767 5154 2.550606 TGACGGCGCTGAATAAAGTTTT 59.449 40.909 25.98 0.00 0.00 2.43
4848 5235 1.202915 TCTGTTCAAGCAAGGATGGCA 60.203 47.619 0.00 0.00 37.68 4.92
4864 5254 1.750399 GCATGGCGGTGACATCCTT 60.750 57.895 0.00 0.00 0.00 3.36
4878 5269 1.628340 CATCCTTGTGGTGGACCTGTA 59.372 52.381 0.00 0.00 36.30 2.74
4880 5271 2.344592 TCCTTGTGGTGGACCTGTATT 58.655 47.619 0.00 0.00 36.82 1.89
4886 5277 1.272816 TGGTGGACCTGTATTCTCGGA 60.273 52.381 0.00 0.00 36.82 4.55
4975 5366 0.532573 AGATTGTGATCTGCGTCGGT 59.467 50.000 0.00 0.00 41.09 4.69
5028 5420 2.677003 CGTGGTTCGTGGATGGCAC 61.677 63.158 0.00 0.00 34.52 5.01
5032 5424 1.356527 GGTTCGTGGATGGCACGTAC 61.357 60.000 0.00 0.00 45.21 3.67
5044 5436 1.505425 GCACGTACGGTTTTCTCCTT 58.495 50.000 21.06 0.00 0.00 3.36
5048 5440 1.336240 CGTACGGTTTTCTCCTTCGGT 60.336 52.381 7.57 0.00 0.00 4.69
5098 5490 1.964373 GTTTGATGGCGTGTCCGGT 60.964 57.895 0.00 0.00 37.80 5.28
5107 5499 2.515057 GTGTCCGGTGTGTTGCCA 60.515 61.111 0.00 0.00 0.00 4.92
5108 5500 2.115911 GTGTCCGGTGTGTTGCCAA 61.116 57.895 0.00 0.00 0.00 4.52
5117 5510 2.362077 GGTGTGTTGCCAAGTCTGATTT 59.638 45.455 0.00 0.00 0.00 2.17
5200 5593 4.537433 ATGGAGCCGCTTCGAGCC 62.537 66.667 0.00 0.00 38.18 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.781025 TTTTGTGCTTCACCGGCGAG 61.781 55.000 9.30 0.06 32.73 5.03
4 5 1.377366 TTTTTGTGCTTCACCGGCGA 61.377 50.000 9.30 0.00 32.73 5.54
5 6 0.934436 CTTTTTGTGCTTCACCGGCG 60.934 55.000 0.00 0.00 32.73 6.46
6 7 0.102300 ACTTTTTGTGCTTCACCGGC 59.898 50.000 0.00 0.00 32.73 6.13
7 8 2.577449 AACTTTTTGTGCTTCACCGG 57.423 45.000 0.00 0.00 32.73 5.28
139 143 0.240945 CCGCCACCACATGAAAGAAC 59.759 55.000 0.00 0.00 0.00 3.01
170 174 3.903714 TGGAGGAAGATGAAGTCAAGTCA 59.096 43.478 0.00 0.00 0.00 3.41
177 181 4.704057 GCAAGATTTGGAGGAAGATGAAGT 59.296 41.667 0.00 0.00 0.00 3.01
189 193 1.745115 CGCCGGAGCAAGATTTGGA 60.745 57.895 5.05 0.00 39.83 3.53
205 209 4.838152 TGAGCAATCCCGAGCCGC 62.838 66.667 0.00 0.00 0.00 6.53
211 215 1.523258 CAGAGCCTGAGCAATCCCG 60.523 63.158 0.00 0.00 43.56 5.14
232 237 1.432270 CGAGCAAGGATTTCGCCCTC 61.432 60.000 0.00 0.00 32.57 4.30
254 259 4.984567 CGCTGCCAGCATCGAAAGAATG 62.985 54.545 18.21 0.00 42.58 2.67
255 260 2.932858 CGCTGCCAGCATCGAAAGAAT 61.933 52.381 18.21 0.00 42.58 2.40
256 261 1.638388 CGCTGCCAGCATCGAAAGAA 61.638 55.000 18.21 0.00 42.58 2.52
257 262 2.102438 CGCTGCCAGCATCGAAAGA 61.102 57.895 18.21 0.00 42.58 2.52
295 300 4.840005 CGCTTCCGAGAAGGGGGC 62.840 72.222 17.31 4.88 41.52 5.80
297 302 3.775654 AGCGCTTCCGAGAAGGGG 61.776 66.667 22.67 11.31 41.52 4.79
361 366 3.550820 CAACATTGGATAATCGGACCCA 58.449 45.455 0.00 0.00 0.00 4.51
384 389 3.757745 AACAAAACCAACGTGACTGAG 57.242 42.857 0.00 0.00 0.00 3.35
385 390 4.230657 CAAAACAAAACCAACGTGACTGA 58.769 39.130 0.00 0.00 0.00 3.41
386 391 3.366422 CCAAAACAAAACCAACGTGACTG 59.634 43.478 0.00 0.00 0.00 3.51
387 392 3.580731 CCAAAACAAAACCAACGTGACT 58.419 40.909 0.00 0.00 0.00 3.41
388 393 2.668945 CCCAAAACAAAACCAACGTGAC 59.331 45.455 0.00 0.00 0.00 3.67
389 394 2.931320 GCCCAAAACAAAACCAACGTGA 60.931 45.455 0.00 0.00 0.00 4.35
390 395 1.395262 GCCCAAAACAAAACCAACGTG 59.605 47.619 0.00 0.00 0.00 4.49
391 396 1.276705 AGCCCAAAACAAAACCAACGT 59.723 42.857 0.00 0.00 0.00 3.99
392 397 2.017138 AGCCCAAAACAAAACCAACG 57.983 45.000 0.00 0.00 0.00 4.10
393 398 2.159448 GCAAGCCCAAAACAAAACCAAC 60.159 45.455 0.00 0.00 0.00 3.77
394 399 2.087646 GCAAGCCCAAAACAAAACCAA 58.912 42.857 0.00 0.00 0.00 3.67
395 400 1.280421 AGCAAGCCCAAAACAAAACCA 59.720 42.857 0.00 0.00 0.00 3.67
396 401 2.036958 AGCAAGCCCAAAACAAAACC 57.963 45.000 0.00 0.00 0.00 3.27
397 402 2.354510 GGAAGCAAGCCCAAAACAAAAC 59.645 45.455 0.00 0.00 0.00 2.43
398 403 2.238395 AGGAAGCAAGCCCAAAACAAAA 59.762 40.909 0.00 0.00 0.00 2.44
421 426 3.782443 CCCTAAACTCGCCCGCCT 61.782 66.667 0.00 0.00 0.00 5.52
440 445 1.489481 AAGAGACATGGGATGCTCGA 58.511 50.000 0.00 0.00 37.99 4.04
459 464 0.462581 GAGCATGATGTCCGGAGCAA 60.463 55.000 3.06 0.00 0.00 3.91
467 472 2.575694 AGAGACGTGAGCATGATGTC 57.424 50.000 0.00 0.00 0.00 3.06
468 473 3.445450 ACTAAGAGACGTGAGCATGATGT 59.555 43.478 0.00 0.00 0.00 3.06
477 482 6.039047 ACTGTACAAGAAACTAAGAGACGTGA 59.961 38.462 0.00 0.00 0.00 4.35
482 487 9.261180 CATTTCACTGTACAAGAAACTAAGAGA 57.739 33.333 19.54 2.57 34.47 3.10
489 494 6.736853 GCGTATCATTTCACTGTACAAGAAAC 59.263 38.462 19.54 10.44 34.47 2.78
490 495 6.425417 TGCGTATCATTTCACTGTACAAGAAA 59.575 34.615 19.47 19.47 35.92 2.52
493 498 5.778161 TGCGTATCATTTCACTGTACAAG 57.222 39.130 0.00 0.00 0.00 3.16
494 499 5.390461 GCTTGCGTATCATTTCACTGTACAA 60.390 40.000 0.00 0.00 0.00 2.41
497 502 4.249661 TGCTTGCGTATCATTTCACTGTA 58.750 39.130 0.00 0.00 0.00 2.74
498 503 3.073678 TGCTTGCGTATCATTTCACTGT 58.926 40.909 0.00 0.00 0.00 3.55
499 504 3.745332 TGCTTGCGTATCATTTCACTG 57.255 42.857 0.00 0.00 0.00 3.66
500 505 4.216257 AGTTTGCTTGCGTATCATTTCACT 59.784 37.500 0.00 0.00 0.00 3.41
502 507 4.764679 AGTTTGCTTGCGTATCATTTCA 57.235 36.364 0.00 0.00 0.00 2.69
504 509 5.175491 CACAAAGTTTGCTTGCGTATCATTT 59.825 36.000 15.59 0.00 34.71 2.32
506 511 4.229096 CACAAAGTTTGCTTGCGTATCAT 58.771 39.130 15.59 0.00 34.71 2.45
508 513 3.628017 ACACAAAGTTTGCTTGCGTATC 58.372 40.909 15.59 0.00 34.71 2.24
509 514 3.708563 ACACAAAGTTTGCTTGCGTAT 57.291 38.095 15.59 0.00 34.71 3.06
510 515 4.319911 GGATACACAAAGTTTGCTTGCGTA 60.320 41.667 15.59 9.49 34.71 4.42
512 517 2.979813 GGATACACAAAGTTTGCTTGCG 59.020 45.455 15.59 2.31 34.71 4.85
513 518 2.979813 CGGATACACAAAGTTTGCTTGC 59.020 45.455 15.59 2.88 34.71 4.01
514 519 2.979813 GCGGATACACAAAGTTTGCTTG 59.020 45.455 15.59 9.76 34.71 4.01
515 520 2.350388 CGCGGATACACAAAGTTTGCTT 60.350 45.455 15.59 5.24 36.30 3.91
516 521 1.196808 CGCGGATACACAAAGTTTGCT 59.803 47.619 15.59 3.73 0.00 3.91
517 522 1.602191 CGCGGATACACAAAGTTTGC 58.398 50.000 15.59 0.00 0.00 3.68
518 523 1.135803 CCCGCGGATACACAAAGTTTG 60.136 52.381 30.73 14.13 0.00 2.93
519 524 1.161843 CCCGCGGATACACAAAGTTT 58.838 50.000 30.73 0.00 0.00 2.66
520 525 0.322322 TCCCGCGGATACACAAAGTT 59.678 50.000 30.73 0.00 0.00 2.66
521 526 0.322322 TTCCCGCGGATACACAAAGT 59.678 50.000 30.73 0.00 0.00 2.66
522 527 1.444836 TTTCCCGCGGATACACAAAG 58.555 50.000 30.73 6.27 0.00 2.77
523 528 1.893544 TTTTCCCGCGGATACACAAA 58.106 45.000 30.73 12.53 0.00 2.83
524 529 1.807742 CTTTTTCCCGCGGATACACAA 59.192 47.619 30.73 10.39 0.00 3.33
525 530 1.444836 CTTTTTCCCGCGGATACACA 58.555 50.000 30.73 4.57 0.00 3.72
526 531 0.098200 GCTTTTTCCCGCGGATACAC 59.902 55.000 30.73 5.70 0.00 2.90
527 532 0.321741 TGCTTTTTCCCGCGGATACA 60.322 50.000 30.73 11.75 0.00 2.29
529 534 2.158871 ACTATGCTTTTTCCCGCGGATA 60.159 45.455 30.73 12.10 0.00 2.59
530 535 1.308998 CTATGCTTTTTCCCGCGGAT 58.691 50.000 30.73 12.19 0.00 4.18
532 537 0.098728 CACTATGCTTTTTCCCGCGG 59.901 55.000 21.04 21.04 0.00 6.46
533 538 0.098728 CCACTATGCTTTTTCCCGCG 59.901 55.000 0.00 0.00 0.00 6.46
536 541 4.526970 TCAGATCCACTATGCTTTTTCCC 58.473 43.478 0.00 0.00 0.00 3.97
541 546 8.985315 TCAAAATATCAGATCCACTATGCTTT 57.015 30.769 0.00 0.00 0.00 3.51
560 651 8.034804 CCTCCGTGGAATTTTTCTATTCAAAAT 58.965 33.333 0.00 0.00 36.46 1.82
591 776 1.001974 CACCTTCACACCGGATCAGAA 59.998 52.381 9.46 5.83 0.00 3.02
622 807 2.461110 GCAAGGTACGTCGCCATGG 61.461 63.158 7.63 7.63 0.00 3.66
646 831 0.176449 AATTACCGCACCCCGTAGAC 59.824 55.000 0.00 0.00 34.38 2.59
666 852 0.578211 CGTAACGTCACGCAACCTTT 59.422 50.000 0.00 0.00 34.78 3.11
962 1148 1.062365 CTCTCGCGCTGACTCTGAG 59.938 63.158 5.56 2.45 0.00 3.35
963 1149 0.746204 ATCTCTCGCGCTGACTCTGA 60.746 55.000 5.56 0.00 0.00 3.27
964 1150 0.316937 GATCTCTCGCGCTGACTCTG 60.317 60.000 5.56 0.00 0.00 3.35
965 1151 0.463654 AGATCTCTCGCGCTGACTCT 60.464 55.000 5.56 4.12 0.00 3.24
966 1152 0.041312 GAGATCTCTCGCGCTGACTC 60.041 60.000 15.80 3.51 32.78 3.36
967 1153 2.021722 GAGATCTCTCGCGCTGACT 58.978 57.895 15.80 0.00 32.78 3.41
968 1154 0.041312 GAGAGATCTCTCGCGCTGAC 60.041 60.000 31.61 11.77 45.49 3.51
969 1155 2.316237 GAGAGATCTCTCGCGCTGA 58.684 57.895 31.61 3.55 45.49 4.26
970 1156 4.920662 GAGAGATCTCTCGCGCTG 57.079 61.111 31.61 0.00 45.49 5.18
1066 1294 0.037790 GATCTCACGGATAGCTGGGC 60.038 60.000 0.00 0.00 34.33 5.36
1088 1316 3.722101 AGGGGATAAAATCACGGGAAGAT 59.278 43.478 0.00 0.00 31.97 2.40
1091 1319 3.120108 AGAGGGGATAAAATCACGGGAA 58.880 45.455 0.00 0.00 31.97 3.97
1115 1351 0.461961 AAAGAGGATCGCGGGAGAAG 59.538 55.000 6.13 0.00 42.67 2.85
1147 1387 4.680237 TCGTCAAGCACCCGCCTG 62.680 66.667 0.00 0.00 39.83 4.85
1280 1520 1.084084 TTGGTAGGGAAGGAGGGGG 59.916 63.158 0.00 0.00 0.00 5.40
1297 1541 0.619543 ACATGGGCGGGTAGGTAGTT 60.620 55.000 0.00 0.00 0.00 2.24
1315 1559 8.074972 GGCAAGAAGAGAATGATTCATGATTAC 58.925 37.037 8.03 0.00 0.00 1.89
1316 1560 7.230108 GGGCAAGAAGAGAATGATTCATGATTA 59.770 37.037 8.03 0.00 0.00 1.75
1354 1628 4.950050 AGGATACAAATCGGAACTAGCAG 58.050 43.478 0.00 0.00 41.41 4.24
1446 1733 4.406003 ACCTGAAGTGAACTCAACTACAGT 59.594 41.667 0.00 0.00 0.00 3.55
1462 1749 3.379372 CCTGCATATTTGACCACCTGAAG 59.621 47.826 0.00 0.00 0.00 3.02
1505 1798 8.008332 AGGTTAATTATTAATTAGGGTGTGGGG 58.992 37.037 8.47 0.00 35.00 4.96
1533 1826 7.932491 TGGTGTGCTTGTAAAACAGTAGTATAA 59.068 33.333 0.00 0.00 0.00 0.98
1535 1828 6.292923 TGGTGTGCTTGTAAAACAGTAGTAT 58.707 36.000 0.00 0.00 0.00 2.12
1536 1829 5.672503 TGGTGTGCTTGTAAAACAGTAGTA 58.327 37.500 0.00 0.00 0.00 1.82
1537 1830 4.519213 TGGTGTGCTTGTAAAACAGTAGT 58.481 39.130 0.00 0.00 0.00 2.73
1580 1879 9.777843 CAAGCGTTTGTTCTTGTAAAATAATTC 57.222 29.630 3.53 0.00 36.01 2.17
1619 1922 2.808523 TCTGAACTCTGAGCTGTGTG 57.191 50.000 4.19 0.00 0.00 3.82
1657 1960 5.114780 CAGCAACTGTGATAATGAGCTAGT 58.885 41.667 0.00 0.00 0.00 2.57
1688 1991 2.753452 TCCAGAACCTAGCTTCTACACG 59.247 50.000 0.00 0.00 0.00 4.49
1694 1997 2.284190 GCATGTCCAGAACCTAGCTTC 58.716 52.381 0.00 0.00 0.00 3.86
1745 2054 5.414144 TCATTCTGTTCCGTGATTTGCATTA 59.586 36.000 0.00 0.00 0.00 1.90
1757 2066 6.226052 TCCATTCTATGATCATTCTGTTCCG 58.774 40.000 14.65 0.00 0.00 4.30
1763 2072 5.183969 CGGCATCCATTCTATGATCATTCT 58.816 41.667 14.65 0.00 0.00 2.40
1771 2080 3.378112 ACAAACACGGCATCCATTCTATG 59.622 43.478 0.00 0.00 0.00 2.23
1773 2082 3.066291 ACAAACACGGCATCCATTCTA 57.934 42.857 0.00 0.00 0.00 2.10
1775 2084 2.228822 AGAACAAACACGGCATCCATTC 59.771 45.455 0.00 0.00 0.00 2.67
1776 2085 2.030007 CAGAACAAACACGGCATCCATT 60.030 45.455 0.00 0.00 0.00 3.16
1777 2086 1.541147 CAGAACAAACACGGCATCCAT 59.459 47.619 0.00 0.00 0.00 3.41
1778 2087 0.950836 CAGAACAAACACGGCATCCA 59.049 50.000 0.00 0.00 0.00 3.41
1886 2199 2.030371 GTAAGAAGGTCCTCCGGGTAG 58.970 57.143 0.00 0.00 39.05 3.18
1910 2223 3.565902 GCTAAGTGCAAACCTTGAGAACT 59.434 43.478 0.00 0.00 42.31 3.01
1937 2250 4.942761 TTTGTACAAAGAGGTACGGAGT 57.057 40.909 17.01 0.00 45.16 3.85
1943 2256 9.991906 GCCAGTATATATTTGTACAAAGAGGTA 57.008 33.333 24.22 13.23 33.32 3.08
1944 2257 8.491134 TGCCAGTATATATTTGTACAAAGAGGT 58.509 33.333 24.22 15.16 33.32 3.85
1945 2258 8.774586 GTGCCAGTATATATTTGTACAAAGAGG 58.225 37.037 24.22 16.81 33.32 3.69
1946 2259 9.325198 TGTGCCAGTATATATTTGTACAAAGAG 57.675 33.333 24.22 8.99 33.32 2.85
1950 2263 9.620259 TGAATGTGCCAGTATATATTTGTACAA 57.380 29.630 3.59 3.59 0.00 2.41
1951 2264 9.620259 TTGAATGTGCCAGTATATATTTGTACA 57.380 29.630 0.00 0.00 0.00 2.90
1954 2267 8.413229 GGTTTGAATGTGCCAGTATATATTTGT 58.587 33.333 0.00 0.00 0.00 2.83
1955 2268 7.591057 CGGTTTGAATGTGCCAGTATATATTTG 59.409 37.037 0.00 0.00 0.00 2.32
1956 2269 7.500892 TCGGTTTGAATGTGCCAGTATATATTT 59.499 33.333 0.00 0.00 0.00 1.40
1957 2270 6.995686 TCGGTTTGAATGTGCCAGTATATATT 59.004 34.615 0.00 0.00 0.00 1.28
1958 2271 6.530120 TCGGTTTGAATGTGCCAGTATATAT 58.470 36.000 0.00 0.00 0.00 0.86
1959 2272 5.919755 TCGGTTTGAATGTGCCAGTATATA 58.080 37.500 0.00 0.00 0.00 0.86
1961 2274 4.081365 TCTCGGTTTGAATGTGCCAGTATA 60.081 41.667 0.00 0.00 0.00 1.47
1962 2275 3.009723 CTCGGTTTGAATGTGCCAGTAT 58.990 45.455 0.00 0.00 0.00 2.12
1963 2276 2.037902 TCTCGGTTTGAATGTGCCAGTA 59.962 45.455 0.00 0.00 0.00 2.74
1964 2277 1.202758 TCTCGGTTTGAATGTGCCAGT 60.203 47.619 0.00 0.00 0.00 4.00
1970 2283 2.872038 GCTGTCCTCTCGGTTTGAATGT 60.872 50.000 0.00 0.00 0.00 2.71
1972 2285 1.347707 TGCTGTCCTCTCGGTTTGAAT 59.652 47.619 0.00 0.00 0.00 2.57
1984 2297 3.996921 ACAATCTGAGAATGCTGTCCT 57.003 42.857 0.00 0.00 0.00 3.85
1985 2298 3.427233 GCAACAATCTGAGAATGCTGTCC 60.427 47.826 3.21 0.00 0.00 4.02
1989 2302 3.439476 GTGAGCAACAATCTGAGAATGCT 59.561 43.478 12.92 12.92 45.98 3.79
2020 2333 1.315690 CAGAACAGCCTATGCATGGG 58.684 55.000 24.02 24.02 41.13 4.00
2026 2339 4.074970 AGTTTTGTCCAGAACAGCCTATG 58.925 43.478 3.88 0.00 39.58 2.23
2064 2377 0.521291 ACCACAACATCGCCGATTTG 59.479 50.000 15.53 15.53 0.00 2.32
2075 2388 3.155861 ACCGTCCCGACCACAACA 61.156 61.111 0.00 0.00 0.00 3.33
2144 2457 2.067365 ATTTACCAGGAATTCCGGCC 57.933 50.000 25.80 0.00 42.08 6.13
2147 2460 4.035208 GCACAGTATTTACCAGGAATTCCG 59.965 45.833 18.82 13.17 42.08 4.30
2185 2498 5.939764 TGAGGTGGCATATATCATACTCC 57.060 43.478 0.00 0.00 0.00 3.85
2186 2499 8.864087 TCATATGAGGTGGCATATATCATACTC 58.136 37.037 0.00 0.00 38.94 2.59
2187 2500 8.788238 TCATATGAGGTGGCATATATCATACT 57.212 34.615 0.00 4.53 38.94 2.12
2188 2501 9.836864 TTTCATATGAGGTGGCATATATCATAC 57.163 33.333 5.39 0.00 38.94 2.39
2192 2505 8.887717 GTTCTTTCATATGAGGTGGCATATATC 58.112 37.037 5.39 0.00 38.94 1.63
2229 2542 8.038944 AGGAAGTAGAAATCGCTGTACATAAAA 58.961 33.333 0.00 0.00 0.00 1.52
2230 2543 7.553334 AGGAAGTAGAAATCGCTGTACATAAA 58.447 34.615 0.00 0.00 0.00 1.40
2236 2549 9.095065 GAAATTAAGGAAGTAGAAATCGCTGTA 57.905 33.333 0.00 0.00 0.00 2.74
2250 2563 6.824305 TCAGCAAAGAGGAAATTAAGGAAG 57.176 37.500 0.00 0.00 0.00 3.46
2286 2603 1.068588 CGGTTCACAGTTCTCACAGGA 59.931 52.381 0.00 0.00 0.00 3.86
2376 2693 6.178239 GCATAAAGCCCATAGTAATTACCG 57.822 41.667 12.05 1.55 37.23 4.02
2438 2760 8.543145 TTTGGACCAAAAACTGTAGTTCAGCG 62.543 42.308 17.47 0.00 37.75 5.18
2735 3058 5.766150 TTAAAACATAGCGCATATGCCTT 57.234 34.783 21.77 12.36 44.50 4.35
2850 3173 7.559590 AATAATCTCATCCTTGAACTTTCCG 57.440 36.000 0.00 0.00 0.00 4.30
2875 3198 4.449743 GTCGTTTACCTTTGTATGCACTGA 59.550 41.667 0.00 0.00 0.00 3.41
2941 3265 9.269453 TCAATGCTCATATCAAATACTTCTGAG 57.731 33.333 0.00 0.00 33.49 3.35
2942 3266 9.788889 ATCAATGCTCATATCAAATACTTCTGA 57.211 29.630 0.00 0.00 0.00 3.27
2944 3268 9.788889 TGATCAATGCTCATATCAAATACTTCT 57.211 29.630 0.00 0.00 0.00 2.85
2945 3269 9.823098 GTGATCAATGCTCATATCAAATACTTC 57.177 33.333 0.00 0.00 30.60 3.01
2946 3270 9.570468 AGTGATCAATGCTCATATCAAATACTT 57.430 29.630 0.00 0.00 30.60 2.24
2964 3288 9.433153 GCAGAATGAGATGATATTAGTGATCAA 57.567 33.333 0.00 0.00 39.69 2.57
2965 3289 8.591072 TGCAGAATGAGATGATATTAGTGATCA 58.409 33.333 0.00 0.00 39.69 2.92
2966 3290 8.999220 TGCAGAATGAGATGATATTAGTGATC 57.001 34.615 0.00 0.00 39.69 2.92
2967 3291 7.549842 GCTGCAGAATGAGATGATATTAGTGAT 59.450 37.037 20.43 0.00 39.69 3.06
2968 3292 6.872547 GCTGCAGAATGAGATGATATTAGTGA 59.127 38.462 20.43 0.00 39.69 3.41
2969 3293 6.874664 AGCTGCAGAATGAGATGATATTAGTG 59.125 38.462 20.43 0.00 39.69 2.74
2970 3294 7.006865 AGCTGCAGAATGAGATGATATTAGT 57.993 36.000 20.43 0.00 39.69 2.24
3345 3691 4.277423 ACCATTCAGAAAACCCGTTAACAG 59.723 41.667 6.39 0.00 0.00 3.16
3353 3699 6.834168 TCTCAAATACCATTCAGAAAACCC 57.166 37.500 0.00 0.00 0.00 4.11
3354 3700 9.143631 CATTTCTCAAATACCATTCAGAAAACC 57.856 33.333 8.75 0.00 34.45 3.27
3380 3726 3.810310 AGCAGCAGATGTAGGTAAGAC 57.190 47.619 0.00 0.00 0.00 3.01
3381 3727 4.826274 AAAGCAGCAGATGTAGGTAAGA 57.174 40.909 0.00 0.00 0.00 2.10
3513 3859 0.535780 TGTCAAGGCCAGCAGACTTG 60.536 55.000 14.57 14.57 42.14 3.16
3531 3877 6.413018 TCAAAGAGATCAATGTCGTCAATG 57.587 37.500 0.00 0.00 0.00 2.82
3561 3907 4.681074 TGTGACAACTGAACATACCTCA 57.319 40.909 0.00 0.00 0.00 3.86
3600 3946 6.937465 TGCCAACAATTGTTACACACTAGATA 59.063 34.615 22.87 0.00 36.32 1.98
3601 3947 5.767665 TGCCAACAATTGTTACACACTAGAT 59.232 36.000 22.87 0.00 36.32 1.98
3602 3948 5.008217 GTGCCAACAATTGTTACACACTAGA 59.992 40.000 31.81 10.53 40.77 2.43
3608 3954 2.364002 AGGGTGCCAACAATTGTTACAC 59.636 45.455 30.39 30.39 40.56 2.90
3623 3970 4.097892 CCTACAAATGGATTAACAGGGTGC 59.902 45.833 0.00 0.00 0.00 5.01
3633 3980 3.893326 GCAAAGGCCTACAAATGGATT 57.107 42.857 5.16 0.00 0.00 3.01
3747 4094 4.793071 TGTTCAATCAATTACCTGTTGCG 58.207 39.130 0.00 0.00 0.00 4.85
3776 4123 4.712122 TCCAAGGTCAAAAGTGAACAAC 57.288 40.909 0.00 0.00 44.63 3.32
3777 4124 5.186797 ACATTCCAAGGTCAAAAGTGAACAA 59.813 36.000 0.00 0.00 44.63 2.83
3778 4125 4.709397 ACATTCCAAGGTCAAAAGTGAACA 59.291 37.500 0.00 0.00 44.63 3.18
3779 4126 5.043248 CACATTCCAAGGTCAAAAGTGAAC 58.957 41.667 0.00 0.00 42.29 3.18
3781 4128 4.531854 TCACATTCCAAGGTCAAAAGTGA 58.468 39.130 0.00 0.00 0.00 3.41
3782 4129 4.916983 TCACATTCCAAGGTCAAAAGTG 57.083 40.909 0.00 0.00 0.00 3.16
3784 4131 4.281688 ACCATCACATTCCAAGGTCAAAAG 59.718 41.667 0.00 0.00 0.00 2.27
3785 4132 4.039004 CACCATCACATTCCAAGGTCAAAA 59.961 41.667 0.00 0.00 0.00 2.44
3786 4133 3.573538 CACCATCACATTCCAAGGTCAAA 59.426 43.478 0.00 0.00 0.00 2.69
3787 4134 3.156293 CACCATCACATTCCAAGGTCAA 58.844 45.455 0.00 0.00 0.00 3.18
3788 4135 2.794103 CACCATCACATTCCAAGGTCA 58.206 47.619 0.00 0.00 0.00 4.02
3801 4162 2.158623 AGAACTTCTGTTGGCACCATCA 60.159 45.455 0.73 0.73 36.39 3.07
3808 4169 0.796927 GCGGTAGAACTTCTGTTGGC 59.203 55.000 1.17 0.00 36.39 4.52
3819 4180 6.347079 CGACAGTTTATTTTTCAGCGGTAGAA 60.347 38.462 0.00 0.00 0.00 2.10
3820 4181 5.119588 CGACAGTTTATTTTTCAGCGGTAGA 59.880 40.000 0.00 0.00 0.00 2.59
3823 4184 3.608474 GCGACAGTTTATTTTTCAGCGGT 60.608 43.478 0.00 0.00 0.00 5.68
3825 4186 2.908626 GGCGACAGTTTATTTTTCAGCG 59.091 45.455 0.00 0.00 0.00 5.18
3827 4188 2.908626 GCGGCGACAGTTTATTTTTCAG 59.091 45.455 12.98 0.00 0.00 3.02
3830 4191 3.057876 TGATGCGGCGACAGTTTATTTTT 60.058 39.130 12.98 0.00 0.00 1.94
3848 4211 9.655769 GTTAGTACATTGTTTGCTCATATGATG 57.344 33.333 5.72 1.54 0.00 3.07
3854 4217 4.394920 CGGGTTAGTACATTGTTTGCTCAT 59.605 41.667 0.00 0.00 0.00 2.90
3863 4226 2.277084 GCTCACCGGGTTAGTACATTG 58.723 52.381 6.32 0.00 0.00 2.82
3865 4228 0.828677 GGCTCACCGGGTTAGTACAT 59.171 55.000 6.32 0.00 0.00 2.29
3876 4239 1.001406 AGAGAAAGAACAGGCTCACCG 59.999 52.381 0.00 0.00 42.76 4.94
4012 4376 1.592400 CTGTGTGTGTGAGCAGCGA 60.592 57.895 0.00 0.00 0.00 4.93
4027 4391 5.985781 CACAAGTGCGTTATTCTTAACTGT 58.014 37.500 0.00 0.00 36.37 3.55
4065 4430 2.035321 TGCGATCCACGATAACATAGCA 59.965 45.455 0.00 0.00 45.77 3.49
4074 4439 2.797278 GGACCCTGCGATCCACGAT 61.797 63.158 0.00 0.00 45.77 3.73
4211 4576 3.947196 TGAGGATGATCGATTTGGTTTGG 59.053 43.478 0.00 0.00 0.00 3.28
4212 4577 4.395854 TGTGAGGATGATCGATTTGGTTTG 59.604 41.667 0.00 0.00 0.00 2.93
4217 4582 3.624410 TGCTTGTGAGGATGATCGATTTG 59.376 43.478 0.00 0.00 0.00 2.32
4220 4585 2.806019 GCTGCTTGTGAGGATGATCGAT 60.806 50.000 0.00 0.00 0.00 3.59
4246 4625 3.515602 ATTCTTCTGCTGTGGGTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
4247 4626 4.640771 TTATTCTTCTGCTGTGGGTCTT 57.359 40.909 0.00 0.00 0.00 3.01
4355 4735 4.668576 TCTTTTATTCAGAGCAAGCGTG 57.331 40.909 0.00 0.00 0.00 5.34
4404 4784 0.813821 GCATTTCCACCTTCAGAGCC 59.186 55.000 0.00 0.00 0.00 4.70
4436 4818 1.379642 GGCGCGGTGGTACTACTACT 61.380 60.000 8.83 0.00 29.70 2.57
4437 4819 1.064783 GGCGCGGTGGTACTACTAC 59.935 63.158 8.83 1.10 0.00 2.73
4438 4820 1.378382 TGGCGCGGTGGTACTACTA 60.378 57.895 8.83 0.00 0.00 1.82
4477 4860 3.155501 GACCAGTACCGATATAGCAGGT 58.844 50.000 9.00 9.00 41.73 4.00
4478 4861 2.161808 CGACCAGTACCGATATAGCAGG 59.838 54.545 0.00 0.00 0.00 4.85
4479 4862 3.072211 TCGACCAGTACCGATATAGCAG 58.928 50.000 0.00 0.00 0.00 4.24
4480 4863 3.130280 TCGACCAGTACCGATATAGCA 57.870 47.619 0.00 0.00 0.00 3.49
4481 4864 3.731264 GCATCGACCAGTACCGATATAGC 60.731 52.174 4.72 2.13 42.79 2.97
4484 4867 1.544691 GGCATCGACCAGTACCGATAT 59.455 52.381 4.72 0.00 42.79 1.63
4497 4880 1.690985 TACCCCCACATGGCATCGA 60.691 57.895 0.00 0.00 0.00 3.59
4503 4886 3.775316 GGTATCTATCTACCCCCACATGG 59.225 52.174 0.00 0.00 36.00 3.66
4507 4890 2.042162 TCCGGTATCTATCTACCCCCAC 59.958 54.545 0.00 0.00 38.35 4.61
4533 4916 2.099141 TCTTTCTTCTGGCACATCGG 57.901 50.000 0.00 0.00 38.20 4.18
4534 4917 4.470462 CTTTTCTTTCTTCTGGCACATCG 58.530 43.478 0.00 0.00 38.20 3.84
4535 4918 4.802999 CCTTTTCTTTCTTCTGGCACATC 58.197 43.478 0.00 0.00 38.20 3.06
4536 4919 3.006217 GCCTTTTCTTTCTTCTGGCACAT 59.994 43.478 0.00 0.00 38.20 3.21
4537 4920 2.362077 GCCTTTTCTTTCTTCTGGCACA 59.638 45.455 0.00 0.00 38.79 4.57
4538 4921 2.605580 CGCCTTTTCTTTCTTCTGGCAC 60.606 50.000 0.00 0.00 38.87 5.01
4539 4922 1.608590 CGCCTTTTCTTTCTTCTGGCA 59.391 47.619 0.00 0.00 38.87 4.92
4540 4923 1.880027 TCGCCTTTTCTTTCTTCTGGC 59.120 47.619 0.00 0.00 35.94 4.85
4543 4926 4.873259 GCTAGATCGCCTTTTCTTTCTTCT 59.127 41.667 0.00 0.00 0.00 2.85
4671 5055 2.870411 GCCTAAAAACGATCCATACGCT 59.130 45.455 0.00 0.00 0.00 5.07
4676 5060 3.118738 ACGAGAGCCTAAAAACGATCCAT 60.119 43.478 0.00 0.00 0.00 3.41
4717 5104 2.595386 GCCGAAGCAAAAACGATGAAT 58.405 42.857 0.00 0.00 39.53 2.57
4767 5154 3.881688 CCTCGTCGGAGTAGGATCTAAAA 59.118 47.826 0.17 0.00 38.70 1.52
4802 5189 4.888326 TTTTCAAATCCATCCCCAACAG 57.112 40.909 0.00 0.00 0.00 3.16
4848 5235 0.677731 CACAAGGATGTCACCGCCAT 60.678 55.000 0.00 0.00 37.82 4.40
4864 5254 1.548719 CGAGAATACAGGTCCACCACA 59.451 52.381 0.00 0.00 38.89 4.17
5044 5436 0.594602 CCACACGACTAAGACACCGA 59.405 55.000 0.00 0.00 0.00 4.69
5048 5440 2.358039 CCCCCACACGACTAAGACA 58.642 57.895 0.00 0.00 0.00 3.41
5067 5459 2.686915 CCATCAAACTTCAGATCTGGCC 59.313 50.000 22.42 0.00 0.00 5.36
5098 5490 6.839617 TGAACAAATCAGACTTGGCAACACA 61.840 40.000 0.00 0.00 39.18 3.72
5107 5499 6.293955 CCATTACCGTTGAACAAATCAGACTT 60.294 38.462 0.00 0.00 39.77 3.01
5108 5500 5.181245 CCATTACCGTTGAACAAATCAGACT 59.819 40.000 0.00 0.00 39.77 3.24
5117 5510 2.031857 GCGAAACCATTACCGTTGAACA 60.032 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.