Multiple sequence alignment - TraesCS6A01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G391900 chr6A 100.000 2937 0 0 1 2937 606596385 606599321 0.000000e+00 5424.0
1 TraesCS6A01G391900 chr6A 89.765 596 40 10 74 654 12880451 12879862 0.000000e+00 743.0
2 TraesCS6A01G391900 chr7B 94.216 1608 57 6 1000 2582 204161506 204163102 0.000000e+00 2422.0
3 TraesCS6A01G391900 chr7B 96.663 959 26 6 46 1002 204157862 204158816 0.000000e+00 1589.0
4 TraesCS6A01G391900 chr7B 97.561 41 1 0 1 41 204157749 204157789 1.460000e-08 71.3
5 TraesCS6A01G391900 chr3B 93.958 1622 55 6 1000 2585 554036207 554037821 0.000000e+00 2412.0
6 TraesCS6A01G391900 chr3B 92.204 1629 54 11 1000 2581 761579373 761580975 0.000000e+00 2237.0
7 TraesCS6A01G391900 chr3B 98.000 450 7 2 554 1002 761576236 761576684 0.000000e+00 780.0
8 TraesCS6A01G391900 chr3B 96.963 461 12 2 46 505 554032612 554033071 0.000000e+00 773.0
9 TraesCS6A01G391900 chr3B 97.333 450 10 2 554 1002 554033070 554033518 0.000000e+00 763.0
10 TraesCS6A01G391900 chr3B 96.095 461 14 4 46 505 761575780 761576237 0.000000e+00 749.0
11 TraesCS6A01G391900 chr3B 97.561 41 1 0 1 41 761575666 761575706 1.460000e-08 71.3
12 TraesCS6A01G391900 chr2B 94.165 1611 48 9 1000 2574 797243298 797241698 0.000000e+00 2412.0
13 TraesCS6A01G391900 chr2B 95.455 44 2 0 1 44 797244491 797244448 1.460000e-08 71.3
14 TraesCS6A01G391900 chr2A 93.387 1618 61 9 1000 2581 4674201 4675808 0.000000e+00 2353.0
15 TraesCS6A01G391900 chr2A 95.278 953 39 6 46 996 4670684 4671632 0.000000e+00 1506.0
16 TraesCS6A01G391900 chr1B 93.247 1629 56 9 1000 2581 646678616 646676995 0.000000e+00 2350.0
17 TraesCS6A01G391900 chr1B 93.140 1618 54 11 1011 2581 664599374 664600981 0.000000e+00 2320.0
18 TraesCS6A01G391900 chr1B 96.987 863 20 5 46 907 664597382 664598239 0.000000e+00 1445.0
19 TraesCS6A01G391900 chr1B 96.529 461 13 3 46 505 646680038 646679580 0.000000e+00 760.0
20 TraesCS6A01G391900 chr1B 97.235 434 10 2 554 986 646679581 646679149 0.000000e+00 734.0
21 TraesCS6A01G391900 chr1B 88.889 153 15 2 445 595 664597888 664598040 1.390000e-43 187.0
22 TraesCS6A01G391900 chr1B 97.561 41 1 0 1 41 664597269 664597309 1.460000e-08 71.3
23 TraesCS6A01G391900 chr1B 95.122 41 2 0 4 44 646680149 646680109 6.790000e-07 65.8
24 TraesCS6A01G391900 chr6B 93.408 1608 51 10 1001 2561 6500881 6499282 0.000000e+00 2331.0
25 TraesCS6A01G391900 chr6B 91.466 457 35 4 542 996 13225901 13226355 2.490000e-175 625.0
26 TraesCS6A01G391900 chr6B 91.247 457 36 4 542 996 13206773 13207227 1.160000e-173 619.0
27 TraesCS6A01G391900 chr6B 86.525 141 7 6 2582 2711 701429492 701429631 8.480000e-31 145.0
28 TraesCS6A01G391900 chr7A 92.383 1221 52 6 1398 2582 19852356 19853571 0.000000e+00 1701.0
29 TraesCS6A01G391900 chr7D 93.678 1123 39 7 1485 2582 46895712 46896827 0.000000e+00 1652.0
30 TraesCS6A01G391900 chr5A 95.803 953 34 6 46 996 469299445 469300393 0.000000e+00 1533.0
31 TraesCS6A01G391900 chr5A 91.152 599 34 9 71 654 542543034 542542440 0.000000e+00 795.0
32 TraesCS6A01G391900 chr5A 93.182 44 3 0 1 44 321930522 321930479 6.790000e-07 65.8
33 TraesCS6A01G391900 chr4A 92.683 984 36 4 1633 2580 702628513 702629496 0.000000e+00 1386.0
34 TraesCS6A01G391900 chrUn 95.455 814 27 5 1000 1813 395861704 395862507 0.000000e+00 1290.0
35 TraesCS6A01G391900 chrUn 92.070 744 34 4 1810 2528 305556717 305555974 0.000000e+00 1024.0
36 TraesCS6A01G391900 chr6D 87.513 929 85 9 1663 2562 312123 311197 0.000000e+00 1044.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G391900 chr6A 606596385 606599321 2936 False 5424.000000 5424 100.000000 1 2937 1 chr6A.!!$F1 2936
1 TraesCS6A01G391900 chr6A 12879862 12880451 589 True 743.000000 743 89.765000 74 654 1 chr6A.!!$R1 580
2 TraesCS6A01G391900 chr7B 204157749 204163102 5353 False 1360.766667 2422 96.146667 1 2582 3 chr7B.!!$F1 2581
3 TraesCS6A01G391900 chr3B 554032612 554037821 5209 False 1316.000000 2412 96.084667 46 2585 3 chr3B.!!$F1 2539
4 TraesCS6A01G391900 chr3B 761575666 761580975 5309 False 959.325000 2237 95.965000 1 2581 4 chr3B.!!$F2 2580
5 TraesCS6A01G391900 chr2B 797241698 797244491 2793 True 1241.650000 2412 94.810000 1 2574 2 chr2B.!!$R1 2573
6 TraesCS6A01G391900 chr2A 4670684 4675808 5124 False 1929.500000 2353 94.332500 46 2581 2 chr2A.!!$F1 2535
7 TraesCS6A01G391900 chr1B 664597269 664600981 3712 False 1005.825000 2320 94.144250 1 2581 4 chr1B.!!$F1 2580
8 TraesCS6A01G391900 chr1B 646676995 646680149 3154 True 977.450000 2350 95.533250 4 2581 4 chr1B.!!$R1 2577
9 TraesCS6A01G391900 chr6B 6499282 6500881 1599 True 2331.000000 2331 93.408000 1001 2561 1 chr6B.!!$R1 1560
10 TraesCS6A01G391900 chr7A 19852356 19853571 1215 False 1701.000000 1701 92.383000 1398 2582 1 chr7A.!!$F1 1184
11 TraesCS6A01G391900 chr7D 46895712 46896827 1115 False 1652.000000 1652 93.678000 1485 2582 1 chr7D.!!$F1 1097
12 TraesCS6A01G391900 chr5A 469299445 469300393 948 False 1533.000000 1533 95.803000 46 996 1 chr5A.!!$F1 950
13 TraesCS6A01G391900 chr5A 542542440 542543034 594 True 795.000000 795 91.152000 71 654 1 chr5A.!!$R2 583
14 TraesCS6A01G391900 chr4A 702628513 702629496 983 False 1386.000000 1386 92.683000 1633 2580 1 chr4A.!!$F1 947
15 TraesCS6A01G391900 chrUn 395861704 395862507 803 False 1290.000000 1290 95.455000 1000 1813 1 chrUn.!!$F1 813
16 TraesCS6A01G391900 chrUn 305555974 305556717 743 True 1024.000000 1024 92.070000 1810 2528 1 chrUn.!!$R1 718
17 TraesCS6A01G391900 chr6D 311197 312123 926 True 1044.000000 1044 87.513000 1663 2562 1 chr6D.!!$R1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1122 0.987294 CCAGGTGATGTGAGGGAGTT 59.013 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 4905 0.036164 TCCTGTTCATCCACCCGTTG 59.964 55.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.124316 ACATGCTAGATAATGCCATCTTCT 57.876 37.500 0.00 0.00 36.63 2.85
44 45 6.924913 TGCTAGATAATGCCATCTTCTACT 57.075 37.500 0.00 0.00 36.63 2.57
535 644 7.814587 GTCCTGGTTCATTCTTTTTATTCCTTG 59.185 37.037 0.00 0.00 0.00 3.61
830 1039 1.340600 GGTGGGGGATTTGATTGTCGA 60.341 52.381 0.00 0.00 0.00 4.20
913 1122 0.987294 CCAGGTGATGTGAGGGAGTT 59.013 55.000 0.00 0.00 0.00 3.01
996 1206 6.207614 CGGAAGAAGAGGGAAAAGAAAAATCT 59.792 38.462 0.00 0.00 0.00 2.40
1025 3939 5.477510 GGATACAACCATGTTTGATGCAAA 58.522 37.500 10.27 0.00 41.05 3.68
1094 4008 2.216898 GGATGGAGTTGATGCTGCTAC 58.783 52.381 0.00 0.00 0.00 3.58
1242 4156 6.771749 AGGATGATGATGAAGAAAATGAGGAC 59.228 38.462 0.00 0.00 0.00 3.85
1248 4162 4.722526 TGAAGAAAATGAGGACCTGGAA 57.277 40.909 0.00 0.00 0.00 3.53
1268 4182 6.189133 TGGAACTGGAAATTGATGATGATGA 58.811 36.000 0.00 0.00 0.00 2.92
1269 4183 6.837048 TGGAACTGGAAATTGATGATGATGAT 59.163 34.615 0.00 0.00 0.00 2.45
1270 4184 7.145985 GGAACTGGAAATTGATGATGATGATG 58.854 38.462 0.00 0.00 0.00 3.07
1316 4233 5.972327 AGTCAATCTGATGGAGGAGATTT 57.028 39.130 0.00 0.00 36.90 2.17
1392 4309 5.533528 GGTAACAAGTGATGGTAGTTTGGTT 59.466 40.000 0.00 0.00 29.90 3.67
1439 4356 0.402121 GCCAAGAAGGTCAAGGAGGT 59.598 55.000 0.00 0.00 40.61 3.85
1440 4357 1.628846 GCCAAGAAGGTCAAGGAGGTA 59.371 52.381 0.00 0.00 40.61 3.08
1441 4358 2.355209 GCCAAGAAGGTCAAGGAGGTAG 60.355 54.545 0.00 0.00 40.61 3.18
1442 4359 3.173965 CCAAGAAGGTCAAGGAGGTAGA 58.826 50.000 0.00 0.00 0.00 2.59
1698 4615 4.019321 GGGGCTGCCATCTATGAGTTATTA 60.019 45.833 22.05 0.00 0.00 0.98
1719 4636 9.542462 TTATTACTGCCATCTACTTGTAATGTC 57.458 33.333 0.00 0.00 34.07 3.06
1798 4715 6.428159 GGTTGTCATCTATGAGTTGTTTCTGT 59.572 38.462 0.00 0.00 37.51 3.41
1813 4730 9.209175 AGTTGTTTCTGTCATCTACTTGTAATC 57.791 33.333 0.00 0.00 0.00 1.75
1874 4803 0.179156 GCGGTTGCCATCATTGAGTG 60.179 55.000 0.00 0.00 33.98 3.51
1885 4814 4.279169 CCATCATTGAGTGGTTGTTTCTGT 59.721 41.667 0.00 0.00 0.00 3.41
1976 4905 4.279420 AGAGCTTTTGGTTTGATGAAGACC 59.721 41.667 0.00 0.00 0.00 3.85
2096 5025 9.883142 AATTGAACTTTCTGTTTGTATTTTGGA 57.117 25.926 0.00 0.00 39.30 3.53
2110 5039 4.654091 ATTTTGGAGTCGGCATAATTGG 57.346 40.909 0.00 0.00 0.00 3.16
2133 5062 6.017770 TGGACTTCGAATGTCGTGTTAAATTT 60.018 34.615 16.35 0.00 41.35 1.82
2169 5098 3.495434 TCTGAACCGTTATGGGTGTTT 57.505 42.857 0.00 0.00 38.35 2.83
2176 5105 2.350964 CCGTTATGGGTGTTTGTTTCGG 60.351 50.000 0.00 0.00 0.00 4.30
2249 5181 6.533730 TCAAGTCACATGTTAATCTGGACTT 58.466 36.000 15.82 15.82 42.85 3.01
2548 5548 1.077716 CCCATTTCGTCCAGGACCC 60.078 63.158 14.46 0.00 0.00 4.46
2585 5585 2.223340 CGAAATCCGAAATTCTGGGCAG 60.223 50.000 4.56 0.00 41.76 4.85
2586 5586 1.767759 AATCCGAAATTCTGGGCAGG 58.232 50.000 4.56 0.00 0.00 4.85
2587 5587 0.918983 ATCCGAAATTCTGGGCAGGA 59.081 50.000 4.56 0.00 0.00 3.86
2588 5588 0.253044 TCCGAAATTCTGGGCAGGAG 59.747 55.000 4.56 0.00 0.00 3.69
2589 5589 0.749454 CCGAAATTCTGGGCAGGAGG 60.749 60.000 0.00 0.00 0.00 4.30
2590 5590 1.379642 CGAAATTCTGGGCAGGAGGC 61.380 60.000 0.00 0.00 43.74 4.70
2591 5591 1.379044 AAATTCTGGGCAGGAGGCG 60.379 57.895 0.00 0.00 46.16 5.52
2592 5592 2.843912 AAATTCTGGGCAGGAGGCGG 62.844 60.000 0.00 0.00 46.16 6.13
2595 5595 4.479993 CTGGGCAGGAGGCGGAAG 62.480 72.222 0.00 0.00 46.16 3.46
2598 5598 4.168291 GGCAGGAGGCGGAAGGAG 62.168 72.222 0.00 0.00 46.16 3.69
2599 5599 4.168291 GCAGGAGGCGGAAGGAGG 62.168 72.222 0.00 0.00 0.00 4.30
2600 5600 2.364317 CAGGAGGCGGAAGGAGGA 60.364 66.667 0.00 0.00 0.00 3.71
2601 5601 1.990060 CAGGAGGCGGAAGGAGGAA 60.990 63.158 0.00 0.00 0.00 3.36
2602 5602 1.687493 AGGAGGCGGAAGGAGGAAG 60.687 63.158 0.00 0.00 0.00 3.46
2603 5603 1.686110 GGAGGCGGAAGGAGGAAGA 60.686 63.158 0.00 0.00 0.00 2.87
2604 5604 1.681486 GGAGGCGGAAGGAGGAAGAG 61.681 65.000 0.00 0.00 0.00 2.85
2605 5605 1.681486 GAGGCGGAAGGAGGAAGAGG 61.681 65.000 0.00 0.00 0.00 3.69
2606 5606 2.736826 GGCGGAAGGAGGAAGAGGG 61.737 68.421 0.00 0.00 0.00 4.30
2607 5607 1.990614 GCGGAAGGAGGAAGAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
2608 5608 1.901085 CGGAAGGAGGAAGAGGGTG 59.099 63.158 0.00 0.00 0.00 4.61
2609 5609 1.617947 CGGAAGGAGGAAGAGGGTGG 61.618 65.000 0.00 0.00 0.00 4.61
2610 5610 1.275421 GGAAGGAGGAAGAGGGTGGG 61.275 65.000 0.00 0.00 0.00 4.61
2611 5611 1.916206 GAAGGAGGAAGAGGGTGGGC 61.916 65.000 0.00 0.00 0.00 5.36
2612 5612 2.285743 GGAGGAAGAGGGTGGGCT 60.286 66.667 0.00 0.00 0.00 5.19
2613 5613 2.371259 GGAGGAAGAGGGTGGGCTC 61.371 68.421 0.00 0.00 0.00 4.70
2614 5614 1.306568 GAGGAAGAGGGTGGGCTCT 60.307 63.158 0.00 0.00 0.00 4.09
2615 5615 1.306568 AGGAAGAGGGTGGGCTCTC 60.307 63.158 0.00 0.00 42.53 3.20
2622 5622 3.653835 GAGGGTGGGCTCTCTTTTTAT 57.346 47.619 0.00 0.00 39.14 1.40
2623 5623 4.772886 GAGGGTGGGCTCTCTTTTTATA 57.227 45.455 0.00 0.00 39.14 0.98
2624 5624 4.709250 GAGGGTGGGCTCTCTTTTTATAG 58.291 47.826 0.00 0.00 39.14 1.31
2625 5625 3.459969 AGGGTGGGCTCTCTTTTTATAGG 59.540 47.826 0.00 0.00 0.00 2.57
2626 5626 3.435169 GGGTGGGCTCTCTTTTTATAGGG 60.435 52.174 0.00 0.00 0.00 3.53
2627 5627 3.435169 GGTGGGCTCTCTTTTTATAGGGG 60.435 52.174 0.00 0.00 0.00 4.79
2628 5628 2.174854 TGGGCTCTCTTTTTATAGGGGC 59.825 50.000 0.00 0.00 0.00 5.80
2629 5629 2.495084 GGCTCTCTTTTTATAGGGGCG 58.505 52.381 0.00 0.00 0.00 6.13
2630 5630 1.874231 GCTCTCTTTTTATAGGGGCGC 59.126 52.381 0.00 0.00 0.00 6.53
2631 5631 2.135933 CTCTCTTTTTATAGGGGCGCG 58.864 52.381 0.00 0.00 0.00 6.86
2632 5632 1.483415 TCTCTTTTTATAGGGGCGCGT 59.517 47.619 8.43 0.47 0.00 6.01
2633 5633 1.865340 CTCTTTTTATAGGGGCGCGTC 59.135 52.381 8.43 4.38 0.00 5.19
2634 5634 0.942252 CTTTTTATAGGGGCGCGTCC 59.058 55.000 24.67 24.67 0.00 4.79
2635 5635 0.810823 TTTTTATAGGGGCGCGTCCG 60.811 55.000 25.64 0.00 34.94 4.79
2636 5636 2.647680 TTTTATAGGGGCGCGTCCGG 62.648 60.000 25.64 0.00 34.94 5.14
2637 5637 4.900704 TATAGGGGCGCGTCCGGT 62.901 66.667 25.64 16.45 34.94 5.28
2654 5654 4.349503 TGCATGCTCCGCTGGGTT 62.350 61.111 20.33 0.00 33.83 4.11
2655 5655 3.064324 GCATGCTCCGCTGGGTTT 61.064 61.111 11.37 0.00 33.83 3.27
2656 5656 2.639327 GCATGCTCCGCTGGGTTTT 61.639 57.895 11.37 0.00 33.83 2.43
2657 5657 1.508088 CATGCTCCGCTGGGTTTTC 59.492 57.895 0.00 0.00 33.83 2.29
2658 5658 1.074775 ATGCTCCGCTGGGTTTTCA 59.925 52.632 0.00 0.00 33.83 2.69
2659 5659 0.323725 ATGCTCCGCTGGGTTTTCAT 60.324 50.000 0.00 0.00 33.83 2.57
2660 5660 0.326595 TGCTCCGCTGGGTTTTCATA 59.673 50.000 0.00 0.00 33.83 2.15
2661 5661 1.271652 TGCTCCGCTGGGTTTTCATAA 60.272 47.619 0.00 0.00 33.83 1.90
2662 5662 2.024414 GCTCCGCTGGGTTTTCATAAT 58.976 47.619 0.00 0.00 33.83 1.28
2663 5663 2.033424 GCTCCGCTGGGTTTTCATAATC 59.967 50.000 0.00 0.00 33.83 1.75
2664 5664 2.285083 TCCGCTGGGTTTTCATAATCG 58.715 47.619 0.00 0.00 33.83 3.34
2665 5665 2.093394 TCCGCTGGGTTTTCATAATCGA 60.093 45.455 0.00 0.00 33.83 3.59
2666 5666 2.680841 CCGCTGGGTTTTCATAATCGAA 59.319 45.455 0.00 0.00 0.00 3.71
2667 5667 3.315191 CCGCTGGGTTTTCATAATCGAAT 59.685 43.478 0.00 0.00 0.00 3.34
2668 5668 4.202010 CCGCTGGGTTTTCATAATCGAATT 60.202 41.667 0.00 0.00 0.00 2.17
2669 5669 4.734854 CGCTGGGTTTTCATAATCGAATTG 59.265 41.667 0.00 0.00 0.00 2.32
2670 5670 5.448496 CGCTGGGTTTTCATAATCGAATTGA 60.448 40.000 0.00 0.00 0.00 2.57
2671 5671 6.329496 GCTGGGTTTTCATAATCGAATTGAA 58.671 36.000 0.00 0.00 0.00 2.69
2672 5672 6.811170 GCTGGGTTTTCATAATCGAATTGAAA 59.189 34.615 13.54 13.54 37.53 2.69
2673 5673 7.492344 GCTGGGTTTTCATAATCGAATTGAAAT 59.508 33.333 16.55 0.00 38.68 2.17
2674 5674 8.700722 TGGGTTTTCATAATCGAATTGAAATG 57.299 30.769 16.55 0.00 38.68 2.32
2675 5675 8.526978 TGGGTTTTCATAATCGAATTGAAATGA 58.473 29.630 16.55 1.72 38.68 2.57
2676 5676 9.533253 GGGTTTTCATAATCGAATTGAAATGAT 57.467 29.630 16.55 0.00 38.68 2.45
2689 5689 2.951642 TGAAATGATTTCAGATCCGGCC 59.048 45.455 16.04 0.00 44.21 6.13
2690 5690 1.986882 AATGATTTCAGATCCGGCCC 58.013 50.000 0.00 0.00 0.00 5.80
2691 5691 0.846015 ATGATTTCAGATCCGGCCCA 59.154 50.000 0.00 0.00 0.00 5.36
2692 5692 0.623194 TGATTTCAGATCCGGCCCAA 59.377 50.000 0.00 0.00 0.00 4.12
2693 5693 1.025041 GATTTCAGATCCGGCCCAAC 58.975 55.000 0.00 0.00 0.00 3.77
2694 5694 0.625849 ATTTCAGATCCGGCCCAACT 59.374 50.000 0.00 0.00 0.00 3.16
2695 5695 0.322456 TTTCAGATCCGGCCCAACTG 60.322 55.000 0.00 2.19 0.00 3.16
2696 5696 2.819984 TTCAGATCCGGCCCAACTGC 62.820 60.000 0.00 0.00 0.00 4.40
2703 5703 3.334054 GGCCCAACTGCCCTCTCT 61.334 66.667 0.00 0.00 46.11 3.10
2704 5704 2.270527 GCCCAACTGCCCTCTCTC 59.729 66.667 0.00 0.00 0.00 3.20
2705 5705 2.297129 GCCCAACTGCCCTCTCTCT 61.297 63.158 0.00 0.00 0.00 3.10
2706 5706 1.904032 CCCAACTGCCCTCTCTCTC 59.096 63.158 0.00 0.00 0.00 3.20
2707 5707 0.617249 CCCAACTGCCCTCTCTCTCT 60.617 60.000 0.00 0.00 0.00 3.10
2708 5708 0.823460 CCAACTGCCCTCTCTCTCTC 59.177 60.000 0.00 0.00 0.00 3.20
2709 5709 1.619432 CCAACTGCCCTCTCTCTCTCT 60.619 57.143 0.00 0.00 0.00 3.10
2710 5710 1.750778 CAACTGCCCTCTCTCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
2711 5711 0.258774 ACTGCCCTCTCTCTCTCTCC 59.741 60.000 0.00 0.00 0.00 3.71
2712 5712 0.468029 CTGCCCTCTCTCTCTCTCCC 60.468 65.000 0.00 0.00 0.00 4.30
2713 5713 1.217747 TGCCCTCTCTCTCTCTCCCA 61.218 60.000 0.00 0.00 0.00 4.37
2714 5714 0.468029 GCCCTCTCTCTCTCTCCCAG 60.468 65.000 0.00 0.00 0.00 4.45
2715 5715 0.926293 CCCTCTCTCTCTCTCCCAGT 59.074 60.000 0.00 0.00 0.00 4.00
2716 5716 1.133792 CCCTCTCTCTCTCTCCCAGTC 60.134 61.905 0.00 0.00 0.00 3.51
2717 5717 1.475034 CCTCTCTCTCTCTCCCAGTCG 60.475 61.905 0.00 0.00 0.00 4.18
2718 5718 1.209504 CTCTCTCTCTCTCCCAGTCGT 59.790 57.143 0.00 0.00 0.00 4.34
2719 5719 1.631388 TCTCTCTCTCTCCCAGTCGTT 59.369 52.381 0.00 0.00 0.00 3.85
2720 5720 1.742831 CTCTCTCTCTCCCAGTCGTTG 59.257 57.143 0.00 0.00 0.00 4.10
2721 5721 0.172352 CTCTCTCTCCCAGTCGTTGC 59.828 60.000 0.00 0.00 0.00 4.17
2722 5722 1.153939 CTCTCTCCCAGTCGTTGCG 60.154 63.158 0.00 0.00 0.00 4.85
2723 5723 1.867919 CTCTCTCCCAGTCGTTGCGT 61.868 60.000 0.00 0.00 0.00 5.24
2724 5724 1.444553 CTCTCCCAGTCGTTGCGTC 60.445 63.158 0.00 0.00 0.00 5.19
2725 5725 2.805353 CTCCCAGTCGTTGCGTCG 60.805 66.667 0.00 0.00 0.00 5.12
2728 5728 3.767230 CCAGTCGTTGCGTCGCAG 61.767 66.667 20.65 10.12 40.61 5.18
2729 5729 4.415501 CAGTCGTTGCGTCGCAGC 62.416 66.667 22.40 22.40 40.61 5.25
2730 5730 4.942481 AGTCGTTGCGTCGCAGCA 62.942 61.111 29.39 16.15 46.54 4.41
2745 5745 2.436292 GCAGAGGCTGAGCAGGTG 60.436 66.667 6.82 0.36 36.96 4.00
2746 5746 2.268280 CAGAGGCTGAGCAGGTGG 59.732 66.667 6.82 0.00 32.44 4.61
2747 5747 2.203907 AGAGGCTGAGCAGGTGGT 60.204 61.111 6.82 0.00 0.00 4.16
2748 5748 1.845205 AGAGGCTGAGCAGGTGGTT 60.845 57.895 6.82 0.00 0.00 3.67
2749 5749 1.073897 GAGGCTGAGCAGGTGGTTT 59.926 57.895 6.82 0.00 0.00 3.27
2750 5750 1.228367 AGGCTGAGCAGGTGGTTTG 60.228 57.895 6.82 0.00 0.00 2.93
2751 5751 1.228245 GGCTGAGCAGGTGGTTTGA 60.228 57.895 6.82 0.00 0.00 2.69
2752 5752 1.518903 GGCTGAGCAGGTGGTTTGAC 61.519 60.000 6.82 0.00 0.00 3.18
2753 5753 1.845809 GCTGAGCAGGTGGTTTGACG 61.846 60.000 0.00 0.00 0.00 4.35
2754 5754 1.227823 TGAGCAGGTGGTTTGACGG 60.228 57.895 0.00 0.00 0.00 4.79
2755 5755 2.594592 AGCAGGTGGTTTGACGGC 60.595 61.111 0.00 0.00 0.00 5.68
2756 5756 2.594592 GCAGGTGGTTTGACGGCT 60.595 61.111 0.00 0.00 0.00 5.52
2757 5757 2.193536 GCAGGTGGTTTGACGGCTT 61.194 57.895 0.00 0.00 0.00 4.35
2758 5758 1.734388 GCAGGTGGTTTGACGGCTTT 61.734 55.000 0.00 0.00 0.00 3.51
2759 5759 1.600023 CAGGTGGTTTGACGGCTTTA 58.400 50.000 0.00 0.00 0.00 1.85
2760 5760 1.265905 CAGGTGGTTTGACGGCTTTAC 59.734 52.381 0.00 0.00 0.00 2.01
2761 5761 1.142262 AGGTGGTTTGACGGCTTTACT 59.858 47.619 0.00 0.00 0.00 2.24
2762 5762 1.534163 GGTGGTTTGACGGCTTTACTC 59.466 52.381 0.00 0.00 0.00 2.59
2763 5763 1.193874 GTGGTTTGACGGCTTTACTCG 59.806 52.381 0.00 0.00 0.00 4.18
2764 5764 1.068895 TGGTTTGACGGCTTTACTCGA 59.931 47.619 0.00 0.00 0.00 4.04
2765 5765 1.458445 GGTTTGACGGCTTTACTCGAC 59.542 52.381 0.00 0.00 0.00 4.20
2766 5766 1.123756 GTTTGACGGCTTTACTCGACG 59.876 52.381 0.00 0.00 39.23 5.12
2767 5767 1.005294 TTGACGGCTTTACTCGACGC 61.005 55.000 0.00 0.00 36.03 5.19
2768 5768 2.494591 GACGGCTTTACTCGACGCG 61.495 63.158 3.53 3.53 36.03 6.01
2769 5769 2.202388 CGGCTTTACTCGACGCGA 60.202 61.111 15.93 2.20 0.00 5.87
2770 5770 2.494591 CGGCTTTACTCGACGCGAC 61.495 63.158 15.93 5.54 0.00 5.19
2771 5771 2.494591 GGCTTTACTCGACGCGACG 61.495 63.158 24.29 24.29 0.00 5.12
2772 5772 1.510623 GCTTTACTCGACGCGACGA 60.511 57.895 29.54 29.54 40.00 4.20
2773 5773 1.718479 GCTTTACTCGACGCGACGAC 61.718 60.000 28.22 14.52 37.37 4.34
2774 5774 1.124702 CTTTACTCGACGCGACGACC 61.125 60.000 28.22 3.59 37.37 4.79
2775 5775 1.840630 TTTACTCGACGCGACGACCA 61.841 55.000 28.22 16.25 37.37 4.02
2776 5776 1.840630 TTACTCGACGCGACGACCAA 61.841 55.000 28.22 20.64 37.37 3.67
2777 5777 2.231745 TACTCGACGCGACGACCAAG 62.232 60.000 28.22 20.47 37.37 3.61
2778 5778 4.394078 TCGACGCGACGACCAAGG 62.394 66.667 28.22 0.16 37.37 3.61
2779 5779 4.695231 CGACGCGACGACCAAGGT 62.695 66.667 25.89 0.00 35.09 3.50
2780 5780 2.804090 GACGCGACGACCAAGGTC 60.804 66.667 15.93 9.22 41.40 3.85
2781 5781 4.353437 ACGCGACGACCAAGGTCC 62.353 66.667 15.93 0.00 41.76 4.46
2782 5782 4.351938 CGCGACGACCAAGGTCCA 62.352 66.667 13.35 0.00 41.76 4.02
2783 5783 2.029964 GCGACGACCAAGGTCCAA 59.970 61.111 13.35 0.00 41.76 3.53
2784 5784 2.315386 GCGACGACCAAGGTCCAAC 61.315 63.158 13.35 4.66 41.76 3.77
2785 5785 1.666872 CGACGACCAAGGTCCAACC 60.667 63.158 13.35 0.27 41.76 3.77
2786 5786 1.448497 GACGACCAAGGTCCAACCA 59.552 57.895 13.35 0.00 41.95 3.67
2787 5787 0.883370 GACGACCAAGGTCCAACCAC 60.883 60.000 13.35 0.00 41.95 4.16
2788 5788 1.599797 CGACCAAGGTCCAACCACC 60.600 63.158 13.35 0.00 41.95 4.61
2790 5790 1.061546 GACCAAGGTCCAACCACCTA 58.938 55.000 8.06 0.00 46.97 3.08
2791 5791 0.769247 ACCAAGGTCCAACCACCTAC 59.231 55.000 0.00 0.00 46.97 3.18
2792 5792 0.037734 CCAAGGTCCAACCACCTACC 59.962 60.000 0.00 0.00 46.97 3.18
2793 5793 0.037734 CAAGGTCCAACCACCTACCC 59.962 60.000 0.00 0.00 46.97 3.69
2794 5794 1.486145 AAGGTCCAACCACCTACCCG 61.486 60.000 0.00 0.00 46.97 5.28
2795 5795 2.046604 GTCCAACCACCTACCCGC 60.047 66.667 0.00 0.00 0.00 6.13
2796 5796 3.324108 TCCAACCACCTACCCGCC 61.324 66.667 0.00 0.00 0.00 6.13
2797 5797 4.419921 CCAACCACCTACCCGCCC 62.420 72.222 0.00 0.00 0.00 6.13
2798 5798 3.327404 CAACCACCTACCCGCCCT 61.327 66.667 0.00 0.00 0.00 5.19
2799 5799 2.530916 AACCACCTACCCGCCCTT 60.531 61.111 0.00 0.00 0.00 3.95
2800 5800 2.599757 AACCACCTACCCGCCCTTC 61.600 63.158 0.00 0.00 0.00 3.46
2801 5801 3.793888 CCACCTACCCGCCCTTCC 61.794 72.222 0.00 0.00 0.00 3.46
2802 5802 2.687566 CACCTACCCGCCCTTCCT 60.688 66.667 0.00 0.00 0.00 3.36
2803 5803 2.124312 ACCTACCCGCCCTTCCTT 59.876 61.111 0.00 0.00 0.00 3.36
2804 5804 1.540617 ACCTACCCGCCCTTCCTTT 60.541 57.895 0.00 0.00 0.00 3.11
2805 5805 1.138228 ACCTACCCGCCCTTCCTTTT 61.138 55.000 0.00 0.00 0.00 2.27
2806 5806 0.039180 CCTACCCGCCCTTCCTTTTT 59.961 55.000 0.00 0.00 0.00 1.94
2807 5807 1.460504 CTACCCGCCCTTCCTTTTTC 58.539 55.000 0.00 0.00 0.00 2.29
2808 5808 0.038599 TACCCGCCCTTCCTTTTTCC 59.961 55.000 0.00 0.00 0.00 3.13
2809 5809 1.982395 CCCGCCCTTCCTTTTTCCC 60.982 63.158 0.00 0.00 0.00 3.97
2810 5810 1.076727 CCGCCCTTCCTTTTTCCCT 59.923 57.895 0.00 0.00 0.00 4.20
2811 5811 0.541998 CCGCCCTTCCTTTTTCCCTT 60.542 55.000 0.00 0.00 0.00 3.95
2812 5812 1.338107 CGCCCTTCCTTTTTCCCTTT 58.662 50.000 0.00 0.00 0.00 3.11
2813 5813 1.691976 CGCCCTTCCTTTTTCCCTTTT 59.308 47.619 0.00 0.00 0.00 2.27
2814 5814 2.288825 CGCCCTTCCTTTTTCCCTTTTC 60.289 50.000 0.00 0.00 0.00 2.29
2815 5815 2.972713 GCCCTTCCTTTTTCCCTTTTCT 59.027 45.455 0.00 0.00 0.00 2.52
2816 5816 3.391296 GCCCTTCCTTTTTCCCTTTTCTT 59.609 43.478 0.00 0.00 0.00 2.52
2817 5817 4.503296 GCCCTTCCTTTTTCCCTTTTCTTC 60.503 45.833 0.00 0.00 0.00 2.87
2818 5818 4.901849 CCCTTCCTTTTTCCCTTTTCTTCT 59.098 41.667 0.00 0.00 0.00 2.85
2819 5819 5.366768 CCCTTCCTTTTTCCCTTTTCTTCTT 59.633 40.000 0.00 0.00 0.00 2.52
2820 5820 6.126768 CCCTTCCTTTTTCCCTTTTCTTCTTT 60.127 38.462 0.00 0.00 0.00 2.52
2821 5821 7.338710 CCTTCCTTTTTCCCTTTTCTTCTTTT 58.661 34.615 0.00 0.00 0.00 2.27
2822 5822 7.495934 CCTTCCTTTTTCCCTTTTCTTCTTTTC 59.504 37.037 0.00 0.00 0.00 2.29
2823 5823 6.884832 TCCTTTTTCCCTTTTCTTCTTTTCC 58.115 36.000 0.00 0.00 0.00 3.13
2824 5824 6.442244 TCCTTTTTCCCTTTTCTTCTTTTCCA 59.558 34.615 0.00 0.00 0.00 3.53
2825 5825 7.127186 TCCTTTTTCCCTTTTCTTCTTTTCCAT 59.873 33.333 0.00 0.00 0.00 3.41
2826 5826 7.775093 CCTTTTTCCCTTTTCTTCTTTTCCATT 59.225 33.333 0.00 0.00 0.00 3.16
2827 5827 9.177608 CTTTTTCCCTTTTCTTCTTTTCCATTT 57.822 29.630 0.00 0.00 0.00 2.32
2828 5828 8.731275 TTTTCCCTTTTCTTCTTTTCCATTTC 57.269 30.769 0.00 0.00 0.00 2.17
2829 5829 6.084326 TCCCTTTTCTTCTTTTCCATTTCG 57.916 37.500 0.00 0.00 0.00 3.46
2830 5830 5.830991 TCCCTTTTCTTCTTTTCCATTTCGA 59.169 36.000 0.00 0.00 0.00 3.71
2831 5831 6.322712 TCCCTTTTCTTCTTTTCCATTTCGAA 59.677 34.615 0.00 0.00 0.00 3.71
2832 5832 6.983890 CCCTTTTCTTCTTTTCCATTTCGAAA 59.016 34.615 13.91 13.91 0.00 3.46
2833 5833 7.042725 CCCTTTTCTTCTTTTCCATTTCGAAAC 60.043 37.037 13.81 0.00 31.57 2.78
2834 5834 7.706607 CCTTTTCTTCTTTTCCATTTCGAAACT 59.293 33.333 13.81 0.00 31.57 2.66
2835 5835 9.730420 CTTTTCTTCTTTTCCATTTCGAAACTA 57.270 29.630 13.81 0.00 31.57 2.24
2838 5838 9.511144 TTCTTCTTTTCCATTTCGAAACTAAAC 57.489 29.630 13.81 0.00 31.57 2.01
2839 5839 8.899771 TCTTCTTTTCCATTTCGAAACTAAACT 58.100 29.630 13.81 0.00 31.57 2.66
2840 5840 8.850454 TTCTTTTCCATTTCGAAACTAAACTG 57.150 30.769 13.81 6.34 31.57 3.16
2841 5841 8.215926 TCTTTTCCATTTCGAAACTAAACTGA 57.784 30.769 13.81 10.93 31.57 3.41
2842 5842 8.126700 TCTTTTCCATTTCGAAACTAAACTGAC 58.873 33.333 13.81 0.00 31.57 3.51
2843 5843 5.934935 TCCATTTCGAAACTAAACTGACC 57.065 39.130 13.81 0.00 0.00 4.02
2844 5844 4.449743 TCCATTTCGAAACTAAACTGACCG 59.550 41.667 13.81 0.00 0.00 4.79
2845 5845 4.449743 CCATTTCGAAACTAAACTGACCGA 59.550 41.667 13.81 0.00 0.00 4.69
2846 5846 5.371629 CATTTCGAAACTAAACTGACCGAC 58.628 41.667 13.81 0.00 0.00 4.79
2847 5847 2.653890 TCGAAACTAAACTGACCGACG 58.346 47.619 0.00 0.00 0.00 5.12
2848 5848 1.717645 CGAAACTAAACTGACCGACGG 59.282 52.381 13.61 13.61 0.00 4.79
2849 5849 2.747436 GAAACTAAACTGACCGACGGT 58.253 47.619 21.93 21.93 39.44 4.83
2850 5850 2.144482 AACTAAACTGACCGACGGTG 57.856 50.000 27.26 13.92 38.23 4.94
2851 5851 0.316204 ACTAAACTGACCGACGGTGG 59.684 55.000 27.26 18.74 38.23 4.61
2852 5852 1.005867 TAAACTGACCGACGGTGGC 60.006 57.895 27.26 11.87 38.23 5.01
2853 5853 1.746322 TAAACTGACCGACGGTGGCA 61.746 55.000 27.26 16.25 38.23 4.92
2854 5854 2.989055 AAACTGACCGACGGTGGCAG 62.989 60.000 27.26 26.48 38.23 4.85
2855 5855 4.742201 CTGACCGACGGTGGCAGG 62.742 72.222 27.26 7.42 35.25 4.85
2857 5857 3.771160 GACCGACGGTGGCAGGAT 61.771 66.667 27.26 0.00 35.25 3.24
2858 5858 2.363276 ACCGACGGTGGCAGGATA 60.363 61.111 21.02 0.00 32.98 2.59
2859 5859 2.106332 CCGACGGTGGCAGGATAC 59.894 66.667 5.48 0.00 0.00 2.24
2877 5877 6.809630 GGATACTGATCCCAAATTTCTAGC 57.190 41.667 0.00 0.00 45.48 3.42
2878 5878 6.299141 GGATACTGATCCCAAATTTCTAGCA 58.701 40.000 0.00 0.00 45.48 3.49
2879 5879 6.205658 GGATACTGATCCCAAATTTCTAGCAC 59.794 42.308 0.00 0.00 45.48 4.40
2880 5880 4.922206 ACTGATCCCAAATTTCTAGCACA 58.078 39.130 0.00 0.00 0.00 4.57
2881 5881 4.702131 ACTGATCCCAAATTTCTAGCACAC 59.298 41.667 0.00 0.00 0.00 3.82
2882 5882 4.016444 TGATCCCAAATTTCTAGCACACC 58.984 43.478 0.00 0.00 0.00 4.16
2883 5883 2.802719 TCCCAAATTTCTAGCACACCC 58.197 47.619 0.00 0.00 0.00 4.61
2884 5884 2.109128 TCCCAAATTTCTAGCACACCCA 59.891 45.455 0.00 0.00 0.00 4.51
2885 5885 2.231235 CCCAAATTTCTAGCACACCCAC 59.769 50.000 0.00 0.00 0.00 4.61
2886 5886 3.157087 CCAAATTTCTAGCACACCCACT 58.843 45.455 0.00 0.00 0.00 4.00
2887 5887 3.057315 CCAAATTTCTAGCACACCCACTG 60.057 47.826 0.00 0.00 0.00 3.66
2888 5888 3.508845 AATTTCTAGCACACCCACTGT 57.491 42.857 0.00 0.00 0.00 3.55
2889 5889 4.634012 AATTTCTAGCACACCCACTGTA 57.366 40.909 0.00 0.00 0.00 2.74
2890 5890 4.634012 ATTTCTAGCACACCCACTGTAA 57.366 40.909 0.00 0.00 0.00 2.41
2891 5891 4.425180 TTTCTAGCACACCCACTGTAAA 57.575 40.909 0.00 0.00 0.00 2.01
2892 5892 4.425180 TTCTAGCACACCCACTGTAAAA 57.575 40.909 0.00 0.00 0.00 1.52
2893 5893 4.425180 TCTAGCACACCCACTGTAAAAA 57.575 40.909 0.00 0.00 0.00 1.94
2894 5894 4.980573 TCTAGCACACCCACTGTAAAAAT 58.019 39.130 0.00 0.00 0.00 1.82
2895 5895 6.116711 TCTAGCACACCCACTGTAAAAATA 57.883 37.500 0.00 0.00 0.00 1.40
2896 5896 6.535540 TCTAGCACACCCACTGTAAAAATAA 58.464 36.000 0.00 0.00 0.00 1.40
2897 5897 7.172342 TCTAGCACACCCACTGTAAAAATAAT 58.828 34.615 0.00 0.00 0.00 1.28
2898 5898 8.322828 TCTAGCACACCCACTGTAAAAATAATA 58.677 33.333 0.00 0.00 0.00 0.98
2899 5899 7.768807 AGCACACCCACTGTAAAAATAATAA 57.231 32.000 0.00 0.00 0.00 1.40
2900 5900 8.361169 AGCACACCCACTGTAAAAATAATAAT 57.639 30.769 0.00 0.00 0.00 1.28
2901 5901 9.469097 AGCACACCCACTGTAAAAATAATAATA 57.531 29.630 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.429078 GCATTATCTAGCATGTTCAGAATCCA 59.571 38.462 0.00 0.00 0.00 3.41
41 42 6.749139 AGCATGCGATAAAGATCAACTAGTA 58.251 36.000 13.01 0.00 31.78 1.82
44 45 5.277490 GCAAGCATGCGATAAAGATCAACTA 60.277 40.000 13.01 0.00 43.83 2.24
121 191 1.598132 CTTCTGGCTTCATCGATGCTG 59.402 52.381 20.81 15.39 33.95 4.41
398 485 1.901833 AGAAAAAGGGAATTGCCGCAT 59.098 42.857 10.69 0.00 37.63 4.73
399 486 1.000731 CAGAAAAAGGGAATTGCCGCA 59.999 47.619 10.69 0.00 37.63 5.69
401 488 1.672737 GGCAGAAAAAGGGAATTGCCG 60.673 52.381 10.69 0.00 41.29 5.69
403 490 3.407424 AAGGCAGAAAAAGGGAATTGC 57.593 42.857 0.00 0.00 0.00 3.56
404 491 8.699130 AGATAATAAGGCAGAAAAAGGGAATTG 58.301 33.333 0.00 0.00 0.00 2.32
406 493 8.844865 AAGATAATAAGGCAGAAAAAGGGAAT 57.155 30.769 0.00 0.00 0.00 3.01
408 495 8.664669 AAAAGATAATAAGGCAGAAAAAGGGA 57.335 30.769 0.00 0.00 0.00 4.20
447 536 8.449251 AACAACATTCCAACTTTAAATGCATT 57.551 26.923 5.99 5.99 34.47 3.56
535 644 9.604626 GCATCATACTATGACTAAAAATTGAGC 57.395 33.333 0.58 0.00 43.01 4.26
830 1039 4.421131 CTCTAGTGATTAGGGGGCAGTAT 58.579 47.826 0.00 0.00 0.00 2.12
913 1122 6.126594 ACGGATATTTCTTGGAACATTAGGGA 60.127 38.462 0.00 0.00 39.30 4.20
996 1206 7.201812 GCATCAAACATGGTTGTATCCATCTAA 60.202 37.037 22.46 0.00 45.23 2.10
1025 3939 7.976414 TTCAACCATTCCATCATAGGATTTT 57.024 32.000 0.00 0.00 37.56 1.82
1094 4008 2.723618 CGTATTTTCTCAAACACGGCGG 60.724 50.000 13.24 2.35 0.00 6.13
1242 4156 4.951715 TCATCATCAATTTCCAGTTCCAGG 59.048 41.667 0.00 0.00 0.00 4.45
1248 4162 7.724061 TCATCATCATCATCATCAATTTCCAGT 59.276 33.333 0.00 0.00 0.00 4.00
1360 4277 5.003804 ACCATCACTTGTTACCTCAACATC 58.996 41.667 0.00 0.00 46.38 3.06
1439 4356 5.880332 GTCAATTGTAAAGGCTGGTGATCTA 59.120 40.000 5.13 0.00 0.00 1.98
1440 4357 4.702131 GTCAATTGTAAAGGCTGGTGATCT 59.298 41.667 5.13 0.00 0.00 2.75
1441 4358 4.458989 TGTCAATTGTAAAGGCTGGTGATC 59.541 41.667 5.13 0.00 0.00 2.92
1442 4359 4.406456 TGTCAATTGTAAAGGCTGGTGAT 58.594 39.130 5.13 0.00 0.00 3.06
1584 4501 6.350445 GGCAGAAACAACAATTGATAGATGGT 60.350 38.462 13.59 0.00 0.00 3.55
1593 4510 6.017400 AGTAGATGGCAGAAACAACAATTG 57.983 37.500 3.24 3.24 0.00 2.32
1698 4615 5.683876 AGACATTACAAGTAGATGGCAGT 57.316 39.130 0.00 0.00 31.10 4.40
1798 4715 9.725019 AGAAACAATGTGATTACAAGTAGATGA 57.275 29.630 0.00 0.00 40.84 2.92
1813 4730 4.987408 TCATATGGGCAGAAACAATGTG 57.013 40.909 2.13 0.00 0.00 3.21
1844 4773 0.943835 GGCAACCGCAATTGGAACAC 60.944 55.000 7.72 0.00 37.99 3.32
1874 4803 7.724305 TTACAAGTAGATGACAGAAACAACC 57.276 36.000 0.00 0.00 0.00 3.77
1976 4905 0.036164 TCCTGTTCATCCACCCGTTG 59.964 55.000 0.00 0.00 0.00 4.10
2001 4930 5.243060 TGAATCGAACAGAGACCTTCACTTA 59.757 40.000 0.00 0.00 0.00 2.24
2096 5025 2.167693 TCGAAGTCCAATTATGCCGACT 59.832 45.455 0.00 0.00 37.17 4.18
2110 5039 9.195831 GATAAATTTAACACGACATTCGAAGTC 57.804 33.333 3.35 10.34 43.74 3.01
2133 5062 5.657474 GGTTCAGAATTACAGTCCACGATA 58.343 41.667 0.00 0.00 0.00 2.92
2169 5098 2.367567 AGTTCTACCAAGAGCCGAAACA 59.632 45.455 0.00 0.00 33.67 2.83
2176 5105 5.459434 GCGACTTAATAGTTCTACCAAGAGC 59.541 44.000 0.00 8.83 33.84 4.09
2249 5181 5.695816 GCAACCATTAGAAAAGCAACATGAA 59.304 36.000 0.00 0.00 0.00 2.57
2333 5265 6.786207 TCAAATCACTACGTATCAGACTGAG 58.214 40.000 11.52 0.00 0.00 3.35
2368 5300 8.830201 AAATGCATGTAAAAATCAAACAGCTA 57.170 26.923 0.00 0.00 0.00 3.32
2585 5585 1.681486 CTCTTCCTCCTTCCGCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
2586 5586 1.681486 CCTCTTCCTCCTTCCGCCTC 61.681 65.000 0.00 0.00 0.00 4.70
2587 5587 1.687493 CCTCTTCCTCCTTCCGCCT 60.687 63.158 0.00 0.00 0.00 5.52
2588 5588 2.736826 CCCTCTTCCTCCTTCCGCC 61.737 68.421 0.00 0.00 0.00 6.13
2589 5589 1.990614 ACCCTCTTCCTCCTTCCGC 60.991 63.158 0.00 0.00 0.00 5.54
2590 5590 1.617947 CCACCCTCTTCCTCCTTCCG 61.618 65.000 0.00 0.00 0.00 4.30
2591 5591 1.275421 CCCACCCTCTTCCTCCTTCC 61.275 65.000 0.00 0.00 0.00 3.46
2592 5592 1.916206 GCCCACCCTCTTCCTCCTTC 61.916 65.000 0.00 0.00 0.00 3.46
2593 5593 1.925972 GCCCACCCTCTTCCTCCTT 60.926 63.158 0.00 0.00 0.00 3.36
2594 5594 2.285743 GCCCACCCTCTTCCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
2595 5595 2.285743 AGCCCACCCTCTTCCTCC 60.286 66.667 0.00 0.00 0.00 4.30
2596 5596 1.306568 AGAGCCCACCCTCTTCCTC 60.307 63.158 0.00 0.00 39.06 3.71
2597 5597 1.306568 GAGAGCCCACCCTCTTCCT 60.307 63.158 0.00 0.00 42.06 3.36
2598 5598 0.912006 AAGAGAGCCCACCCTCTTCC 60.912 60.000 0.00 0.00 43.95 3.46
2599 5599 0.988063 AAAGAGAGCCCACCCTCTTC 59.012 55.000 0.00 0.00 45.85 2.87
2601 5601 1.450360 AAAAAGAGAGCCCACCCTCT 58.550 50.000 0.00 0.00 44.57 3.69
2602 5602 3.653835 ATAAAAAGAGAGCCCACCCTC 57.346 47.619 0.00 0.00 0.00 4.30
2603 5603 3.459969 CCTATAAAAAGAGAGCCCACCCT 59.540 47.826 0.00 0.00 0.00 4.34
2604 5604 3.435169 CCCTATAAAAAGAGAGCCCACCC 60.435 52.174 0.00 0.00 0.00 4.61
2605 5605 3.435169 CCCCTATAAAAAGAGAGCCCACC 60.435 52.174 0.00 0.00 0.00 4.61
2606 5606 3.821748 CCCCTATAAAAAGAGAGCCCAC 58.178 50.000 0.00 0.00 0.00 4.61
2607 5607 2.174854 GCCCCTATAAAAAGAGAGCCCA 59.825 50.000 0.00 0.00 0.00 5.36
2608 5608 2.810767 CGCCCCTATAAAAAGAGAGCCC 60.811 54.545 0.00 0.00 0.00 5.19
2609 5609 2.495084 CGCCCCTATAAAAAGAGAGCC 58.505 52.381 0.00 0.00 0.00 4.70
2610 5610 1.874231 GCGCCCCTATAAAAAGAGAGC 59.126 52.381 0.00 0.00 0.00 4.09
2611 5611 2.135933 CGCGCCCCTATAAAAAGAGAG 58.864 52.381 0.00 0.00 0.00 3.20
2612 5612 1.483415 ACGCGCCCCTATAAAAAGAGA 59.517 47.619 5.73 0.00 0.00 3.10
2613 5613 1.865340 GACGCGCCCCTATAAAAAGAG 59.135 52.381 5.73 0.00 0.00 2.85
2614 5614 1.473788 GGACGCGCCCCTATAAAAAGA 60.474 52.381 5.73 0.00 0.00 2.52
2615 5615 0.942252 GGACGCGCCCCTATAAAAAG 59.058 55.000 5.73 0.00 0.00 2.27
2616 5616 0.810823 CGGACGCGCCCCTATAAAAA 60.811 55.000 5.66 0.00 0.00 1.94
2617 5617 1.227321 CGGACGCGCCCCTATAAAA 60.227 57.895 5.66 0.00 0.00 1.52
2618 5618 2.418356 CGGACGCGCCCCTATAAA 59.582 61.111 5.66 0.00 0.00 1.40
2619 5619 3.608662 CCGGACGCGCCCCTATAA 61.609 66.667 5.66 0.00 0.00 0.98
2620 5620 4.900704 ACCGGACGCGCCCCTATA 62.901 66.667 9.46 0.00 0.00 1.31
2643 5643 2.287915 CGATTATGAAAACCCAGCGGAG 59.712 50.000 0.00 0.00 0.00 4.63
2644 5644 2.093394 TCGATTATGAAAACCCAGCGGA 60.093 45.455 0.00 0.00 0.00 5.54
2645 5645 2.285083 TCGATTATGAAAACCCAGCGG 58.715 47.619 0.00 0.00 0.00 5.52
2646 5646 4.552166 ATTCGATTATGAAAACCCAGCG 57.448 40.909 0.00 0.00 0.00 5.18
2647 5647 5.890334 TCAATTCGATTATGAAAACCCAGC 58.110 37.500 0.00 0.00 0.00 4.85
2648 5648 8.810427 CATTTCAATTCGATTATGAAAACCCAG 58.190 33.333 18.56 8.13 43.79 4.45
2649 5649 8.526978 TCATTTCAATTCGATTATGAAAACCCA 58.473 29.630 18.56 3.36 43.79 4.51
2650 5650 8.925161 TCATTTCAATTCGATTATGAAAACCC 57.075 30.769 18.56 0.00 43.79 4.11
2668 5668 2.951642 GGCCGGATCTGAAATCATTTCA 59.048 45.455 12.35 12.35 46.68 2.69
2669 5669 2.294512 GGGCCGGATCTGAAATCATTTC 59.705 50.000 5.05 2.87 40.08 2.17
2670 5670 2.310538 GGGCCGGATCTGAAATCATTT 58.689 47.619 5.05 0.00 0.00 2.32
2671 5671 1.215173 TGGGCCGGATCTGAAATCATT 59.785 47.619 5.05 0.00 0.00 2.57
2672 5672 0.846015 TGGGCCGGATCTGAAATCAT 59.154 50.000 5.05 0.00 0.00 2.45
2673 5673 0.623194 TTGGGCCGGATCTGAAATCA 59.377 50.000 5.05 0.00 0.00 2.57
2674 5674 1.025041 GTTGGGCCGGATCTGAAATC 58.975 55.000 5.05 0.00 0.00 2.17
2675 5675 0.625849 AGTTGGGCCGGATCTGAAAT 59.374 50.000 5.05 0.00 0.00 2.17
2676 5676 0.322456 CAGTTGGGCCGGATCTGAAA 60.322 55.000 5.05 0.00 0.00 2.69
2677 5677 1.299648 CAGTTGGGCCGGATCTGAA 59.700 57.895 5.05 0.00 0.00 3.02
2678 5678 2.989639 CAGTTGGGCCGGATCTGA 59.010 61.111 5.05 0.00 0.00 3.27
2679 5679 2.825836 GCAGTTGGGCCGGATCTG 60.826 66.667 5.05 6.53 0.00 2.90
2680 5680 4.115199 GGCAGTTGGGCCGGATCT 62.115 66.667 5.05 0.00 45.40 2.75
2687 5687 2.250741 GAGAGAGAGGGCAGTTGGGC 62.251 65.000 0.00 0.00 42.44 5.36
2688 5688 0.617249 AGAGAGAGAGGGCAGTTGGG 60.617 60.000 0.00 0.00 0.00 4.12
2689 5689 0.823460 GAGAGAGAGAGGGCAGTTGG 59.177 60.000 0.00 0.00 0.00 3.77
2690 5690 1.750778 GAGAGAGAGAGAGGGCAGTTG 59.249 57.143 0.00 0.00 0.00 3.16
2691 5691 1.341976 GGAGAGAGAGAGAGGGCAGTT 60.342 57.143 0.00 0.00 0.00 3.16
2692 5692 0.258774 GGAGAGAGAGAGAGGGCAGT 59.741 60.000 0.00 0.00 0.00 4.40
2693 5693 0.468029 GGGAGAGAGAGAGAGGGCAG 60.468 65.000 0.00 0.00 0.00 4.85
2694 5694 1.217747 TGGGAGAGAGAGAGAGGGCA 61.218 60.000 0.00 0.00 0.00 5.36
2695 5695 0.468029 CTGGGAGAGAGAGAGAGGGC 60.468 65.000 0.00 0.00 0.00 5.19
2696 5696 0.926293 ACTGGGAGAGAGAGAGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
2697 5697 1.475034 CGACTGGGAGAGAGAGAGAGG 60.475 61.905 0.00 0.00 0.00 3.69
2698 5698 1.209504 ACGACTGGGAGAGAGAGAGAG 59.790 57.143 0.00 0.00 0.00 3.20
2699 5699 1.281419 ACGACTGGGAGAGAGAGAGA 58.719 55.000 0.00 0.00 0.00 3.10
2700 5700 1.742831 CAACGACTGGGAGAGAGAGAG 59.257 57.143 0.00 0.00 0.00 3.20
2701 5701 1.827681 CAACGACTGGGAGAGAGAGA 58.172 55.000 0.00 0.00 0.00 3.10
2702 5702 0.172352 GCAACGACTGGGAGAGAGAG 59.828 60.000 0.00 0.00 0.00 3.20
2703 5703 1.587043 CGCAACGACTGGGAGAGAGA 61.587 60.000 0.00 0.00 40.40 3.10
2704 5704 1.153939 CGCAACGACTGGGAGAGAG 60.154 63.158 0.00 0.00 40.40 3.20
2705 5705 1.863662 GACGCAACGACTGGGAGAGA 61.864 60.000 11.92 0.00 40.40 3.10
2706 5706 1.444553 GACGCAACGACTGGGAGAG 60.445 63.158 11.92 0.00 40.40 3.20
2707 5707 2.649034 GACGCAACGACTGGGAGA 59.351 61.111 11.92 0.00 40.40 3.71
2708 5708 2.805353 CGACGCAACGACTGGGAG 60.805 66.667 11.92 3.83 40.40 4.30
2711 5711 3.767230 CTGCGACGCAACGACTGG 61.767 66.667 24.51 6.28 38.41 4.00
2712 5712 4.415501 GCTGCGACGCAACGACTG 62.416 66.667 24.51 11.95 38.41 3.51
2713 5713 4.942481 TGCTGCGACGCAACGACT 62.942 61.111 24.51 0.00 38.41 4.18
2714 5714 4.415501 CTGCTGCGACGCAACGAC 62.416 66.667 24.51 13.62 39.80 4.34
2715 5715 4.639171 TCTGCTGCGACGCAACGA 62.639 61.111 24.51 16.97 39.80 3.85
2716 5716 4.126390 CTCTGCTGCGACGCAACG 62.126 66.667 24.51 14.25 39.80 4.10
2717 5717 3.782244 CCTCTGCTGCGACGCAAC 61.782 66.667 24.51 20.16 39.80 4.17
2728 5728 2.436292 CACCTGCTCAGCCTCTGC 60.436 66.667 0.00 0.00 37.95 4.26
2729 5729 2.121992 AACCACCTGCTCAGCCTCTG 62.122 60.000 0.00 0.00 0.00 3.35
2730 5730 1.422161 AAACCACCTGCTCAGCCTCT 61.422 55.000 0.00 0.00 0.00 3.69
2731 5731 1.073897 AAACCACCTGCTCAGCCTC 59.926 57.895 0.00 0.00 0.00 4.70
2732 5732 1.228367 CAAACCACCTGCTCAGCCT 60.228 57.895 0.00 0.00 0.00 4.58
2733 5733 1.228245 TCAAACCACCTGCTCAGCC 60.228 57.895 0.00 0.00 0.00 4.85
2734 5734 1.845809 CGTCAAACCACCTGCTCAGC 61.846 60.000 0.00 0.00 0.00 4.26
2735 5735 1.230635 CCGTCAAACCACCTGCTCAG 61.231 60.000 0.00 0.00 0.00 3.35
2736 5736 1.227823 CCGTCAAACCACCTGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
2737 5737 2.617274 GCCGTCAAACCACCTGCTC 61.617 63.158 0.00 0.00 0.00 4.26
2738 5738 2.594592 GCCGTCAAACCACCTGCT 60.595 61.111 0.00 0.00 0.00 4.24
2739 5739 1.734388 AAAGCCGTCAAACCACCTGC 61.734 55.000 0.00 0.00 0.00 4.85
2740 5740 1.265905 GTAAAGCCGTCAAACCACCTG 59.734 52.381 0.00 0.00 0.00 4.00
2741 5741 1.142262 AGTAAAGCCGTCAAACCACCT 59.858 47.619 0.00 0.00 0.00 4.00
2742 5742 1.534163 GAGTAAAGCCGTCAAACCACC 59.466 52.381 0.00 0.00 0.00 4.61
2743 5743 1.193874 CGAGTAAAGCCGTCAAACCAC 59.806 52.381 0.00 0.00 0.00 4.16
2744 5744 1.068895 TCGAGTAAAGCCGTCAAACCA 59.931 47.619 0.00 0.00 0.00 3.67
2745 5745 1.458445 GTCGAGTAAAGCCGTCAAACC 59.542 52.381 0.00 0.00 0.00 3.27
2746 5746 1.123756 CGTCGAGTAAAGCCGTCAAAC 59.876 52.381 0.00 0.00 0.00 2.93
2747 5747 1.411394 CGTCGAGTAAAGCCGTCAAA 58.589 50.000 0.00 0.00 0.00 2.69
2748 5748 1.005294 GCGTCGAGTAAAGCCGTCAA 61.005 55.000 0.00 0.00 0.00 3.18
2749 5749 1.443194 GCGTCGAGTAAAGCCGTCA 60.443 57.895 0.00 0.00 0.00 4.35
2750 5750 2.494591 CGCGTCGAGTAAAGCCGTC 61.495 63.158 0.00 0.00 0.00 4.79
2751 5751 2.503375 CGCGTCGAGTAAAGCCGT 60.503 61.111 0.00 0.00 0.00 5.68
2752 5752 2.202388 TCGCGTCGAGTAAAGCCG 60.202 61.111 5.77 0.00 0.00 5.52
2753 5753 2.494591 CGTCGCGTCGAGTAAAGCC 61.495 63.158 20.81 0.00 36.23 4.35
2754 5754 1.510623 TCGTCGCGTCGAGTAAAGC 60.511 57.895 23.69 0.00 36.23 3.51
2755 5755 1.124702 GGTCGTCGCGTCGAGTAAAG 61.125 60.000 27.51 0.00 40.52 1.85
2756 5756 1.154413 GGTCGTCGCGTCGAGTAAA 60.154 57.895 27.51 4.27 40.52 2.01
2757 5757 1.840630 TTGGTCGTCGCGTCGAGTAA 61.841 55.000 27.51 21.00 40.52 2.24
2758 5758 2.231745 CTTGGTCGTCGCGTCGAGTA 62.232 60.000 27.51 16.69 40.52 2.59
2759 5759 3.590443 CTTGGTCGTCGCGTCGAGT 62.590 63.158 27.51 0.00 40.52 4.18
2760 5760 2.870161 CTTGGTCGTCGCGTCGAG 60.870 66.667 27.51 12.92 40.52 4.04
2761 5761 4.394078 CCTTGGTCGTCGCGTCGA 62.394 66.667 23.69 23.69 37.51 4.20
2762 5762 4.695231 ACCTTGGTCGTCGCGTCG 62.695 66.667 19.46 19.46 0.00 5.12
2763 5763 2.804090 GACCTTGGTCGTCGCGTC 60.804 66.667 5.77 0.00 0.00 5.19
2764 5764 4.353437 GGACCTTGGTCGTCGCGT 62.353 66.667 5.77 0.00 0.00 6.01
2765 5765 3.851845 TTGGACCTTGGTCGTCGCG 62.852 63.158 12.97 0.00 0.00 5.87
2766 5766 2.029964 TTGGACCTTGGTCGTCGC 59.970 61.111 12.97 1.01 0.00 5.19
2767 5767 1.666872 GGTTGGACCTTGGTCGTCG 60.667 63.158 12.97 0.00 34.73 5.12
2768 5768 0.883370 GTGGTTGGACCTTGGTCGTC 60.883 60.000 12.97 6.39 39.58 4.20
2769 5769 1.147600 GTGGTTGGACCTTGGTCGT 59.852 57.895 12.97 0.00 39.58 4.34
2770 5770 1.599797 GGTGGTTGGACCTTGGTCG 60.600 63.158 12.97 0.00 39.58 4.79
2771 5771 1.061546 TAGGTGGTTGGACCTTGGTC 58.938 55.000 11.13 11.13 44.53 4.02
2772 5772 0.769247 GTAGGTGGTTGGACCTTGGT 59.231 55.000 0.00 0.00 44.53 3.67
2773 5773 0.037734 GGTAGGTGGTTGGACCTTGG 59.962 60.000 0.00 0.00 44.53 3.61
2774 5774 0.037734 GGGTAGGTGGTTGGACCTTG 59.962 60.000 0.00 0.00 44.53 3.61
2775 5775 1.486145 CGGGTAGGTGGTTGGACCTT 61.486 60.000 0.00 0.00 44.53 3.50
2777 5777 2.666812 CGGGTAGGTGGTTGGACC 59.333 66.667 0.00 0.00 39.22 4.46
2778 5778 2.046604 GCGGGTAGGTGGTTGGAC 60.047 66.667 0.00 0.00 0.00 4.02
2779 5779 3.324108 GGCGGGTAGGTGGTTGGA 61.324 66.667 0.00 0.00 0.00 3.53
2780 5780 4.419921 GGGCGGGTAGGTGGTTGG 62.420 72.222 0.00 0.00 0.00 3.77
2781 5781 2.814913 GAAGGGCGGGTAGGTGGTTG 62.815 65.000 0.00 0.00 0.00 3.77
2782 5782 2.530916 AAGGGCGGGTAGGTGGTT 60.531 61.111 0.00 0.00 0.00 3.67
2783 5783 3.007323 GAAGGGCGGGTAGGTGGT 61.007 66.667 0.00 0.00 0.00 4.16
2784 5784 3.793888 GGAAGGGCGGGTAGGTGG 61.794 72.222 0.00 0.00 0.00 4.61
2785 5785 1.848886 AAAGGAAGGGCGGGTAGGTG 61.849 60.000 0.00 0.00 0.00 4.00
2786 5786 1.138228 AAAAGGAAGGGCGGGTAGGT 61.138 55.000 0.00 0.00 0.00 3.08
2787 5787 0.039180 AAAAAGGAAGGGCGGGTAGG 59.961 55.000 0.00 0.00 0.00 3.18
2788 5788 1.460504 GAAAAAGGAAGGGCGGGTAG 58.539 55.000 0.00 0.00 0.00 3.18
2789 5789 0.038599 GGAAAAAGGAAGGGCGGGTA 59.961 55.000 0.00 0.00 0.00 3.69
2790 5790 1.228769 GGAAAAAGGAAGGGCGGGT 60.229 57.895 0.00 0.00 0.00 5.28
2791 5791 1.982395 GGGAAAAAGGAAGGGCGGG 60.982 63.158 0.00 0.00 0.00 6.13
2792 5792 0.541998 AAGGGAAAAAGGAAGGGCGG 60.542 55.000 0.00 0.00 0.00 6.13
2793 5793 1.338107 AAAGGGAAAAAGGAAGGGCG 58.662 50.000 0.00 0.00 0.00 6.13
2794 5794 2.972713 AGAAAAGGGAAAAAGGAAGGGC 59.027 45.455 0.00 0.00 0.00 5.19
2795 5795 4.901849 AGAAGAAAAGGGAAAAAGGAAGGG 59.098 41.667 0.00 0.00 0.00 3.95
2796 5796 6.485830 AAGAAGAAAAGGGAAAAAGGAAGG 57.514 37.500 0.00 0.00 0.00 3.46
2797 5797 7.495934 GGAAAAGAAGAAAAGGGAAAAAGGAAG 59.504 37.037 0.00 0.00 0.00 3.46
2798 5798 7.037945 TGGAAAAGAAGAAAAGGGAAAAAGGAA 60.038 33.333 0.00 0.00 0.00 3.36
2799 5799 6.442244 TGGAAAAGAAGAAAAGGGAAAAAGGA 59.558 34.615 0.00 0.00 0.00 3.36
2800 5800 6.649155 TGGAAAAGAAGAAAAGGGAAAAAGG 58.351 36.000 0.00 0.00 0.00 3.11
2801 5801 8.737168 AATGGAAAAGAAGAAAAGGGAAAAAG 57.263 30.769 0.00 0.00 0.00 2.27
2802 5802 9.173021 GAAATGGAAAAGAAGAAAAGGGAAAAA 57.827 29.630 0.00 0.00 0.00 1.94
2803 5803 7.494298 CGAAATGGAAAAGAAGAAAAGGGAAAA 59.506 33.333 0.00 0.00 0.00 2.29
2804 5804 6.983890 CGAAATGGAAAAGAAGAAAAGGGAAA 59.016 34.615 0.00 0.00 0.00 3.13
2805 5805 6.322712 TCGAAATGGAAAAGAAGAAAAGGGAA 59.677 34.615 0.00 0.00 0.00 3.97
2806 5806 5.830991 TCGAAATGGAAAAGAAGAAAAGGGA 59.169 36.000 0.00 0.00 0.00 4.20
2807 5807 6.084326 TCGAAATGGAAAAGAAGAAAAGGG 57.916 37.500 0.00 0.00 0.00 3.95
2808 5808 7.706607 AGTTTCGAAATGGAAAAGAAGAAAAGG 59.293 33.333 14.69 0.00 37.63 3.11
2809 5809 8.634475 AGTTTCGAAATGGAAAAGAAGAAAAG 57.366 30.769 14.69 0.00 37.63 2.27
2812 5812 9.511144 GTTTAGTTTCGAAATGGAAAAGAAGAA 57.489 29.630 14.69 0.00 37.63 2.52
2813 5813 8.899771 AGTTTAGTTTCGAAATGGAAAAGAAGA 58.100 29.630 14.69 0.00 37.63 2.87
2814 5814 8.958043 CAGTTTAGTTTCGAAATGGAAAAGAAG 58.042 33.333 14.69 3.10 37.63 2.85
2815 5815 8.679100 TCAGTTTAGTTTCGAAATGGAAAAGAA 58.321 29.630 14.69 0.00 37.63 2.52
2816 5816 8.126700 GTCAGTTTAGTTTCGAAATGGAAAAGA 58.873 33.333 14.69 12.05 37.63 2.52
2817 5817 7.378728 GGTCAGTTTAGTTTCGAAATGGAAAAG 59.621 37.037 14.69 10.33 37.63 2.27
2818 5818 7.197703 GGTCAGTTTAGTTTCGAAATGGAAAA 58.802 34.615 14.69 9.32 37.63 2.29
2819 5819 6.512091 CGGTCAGTTTAGTTTCGAAATGGAAA 60.512 38.462 14.69 11.45 33.73 3.13
2820 5820 5.049954 CGGTCAGTTTAGTTTCGAAATGGAA 60.050 40.000 14.69 5.97 0.00 3.53
2821 5821 4.449743 CGGTCAGTTTAGTTTCGAAATGGA 59.550 41.667 14.69 0.00 0.00 3.41
2822 5822 4.449743 TCGGTCAGTTTAGTTTCGAAATGG 59.550 41.667 14.69 0.00 0.00 3.16
2823 5823 5.371629 GTCGGTCAGTTTAGTTTCGAAATG 58.628 41.667 14.69 7.21 0.00 2.32
2824 5824 4.149396 CGTCGGTCAGTTTAGTTTCGAAAT 59.851 41.667 14.69 6.02 0.00 2.17
2825 5825 3.486841 CGTCGGTCAGTTTAGTTTCGAAA 59.513 43.478 6.47 6.47 0.00 3.46
2826 5826 3.044986 CGTCGGTCAGTTTAGTTTCGAA 58.955 45.455 0.00 0.00 0.00 3.71
2827 5827 2.605338 CCGTCGGTCAGTTTAGTTTCGA 60.605 50.000 2.08 0.00 0.00 3.71
2828 5828 1.717645 CCGTCGGTCAGTTTAGTTTCG 59.282 52.381 2.08 0.00 0.00 3.46
2829 5829 2.473984 CACCGTCGGTCAGTTTAGTTTC 59.526 50.000 15.67 0.00 31.02 2.78
2830 5830 2.476821 CACCGTCGGTCAGTTTAGTTT 58.523 47.619 15.67 0.00 31.02 2.66
2831 5831 1.269936 CCACCGTCGGTCAGTTTAGTT 60.270 52.381 15.67 0.00 31.02 2.24
2832 5832 0.316204 CCACCGTCGGTCAGTTTAGT 59.684 55.000 15.67 0.00 31.02 2.24
2833 5833 1.012486 GCCACCGTCGGTCAGTTTAG 61.012 60.000 15.67 0.79 31.02 1.85
2834 5834 1.005867 GCCACCGTCGGTCAGTTTA 60.006 57.895 15.67 0.00 31.02 2.01
2835 5835 2.280592 GCCACCGTCGGTCAGTTT 60.281 61.111 15.67 0.00 31.02 2.66
2836 5836 3.515316 CTGCCACCGTCGGTCAGTT 62.515 63.158 15.67 0.00 31.02 3.16
2837 5837 3.991051 CTGCCACCGTCGGTCAGT 61.991 66.667 15.67 0.00 31.02 3.41
2838 5838 4.742201 CCTGCCACCGTCGGTCAG 62.742 72.222 20.84 20.84 31.02 3.51
2840 5840 2.420568 TATCCTGCCACCGTCGGTC 61.421 63.158 15.67 4.89 31.02 4.79
2841 5841 2.363276 TATCCTGCCACCGTCGGT 60.363 61.111 12.23 12.23 35.62 4.69
2842 5842 2.106332 GTATCCTGCCACCGTCGG 59.894 66.667 10.48 10.48 0.00 4.79
2843 5843 1.226974 CAGTATCCTGCCACCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
2844 5844 0.753262 ATCAGTATCCTGCCACCGTC 59.247 55.000 0.00 0.00 38.66 4.79
2845 5845 0.753262 GATCAGTATCCTGCCACCGT 59.247 55.000 0.00 0.00 38.66 4.83
2846 5846 3.595691 GATCAGTATCCTGCCACCG 57.404 57.895 0.00 0.00 38.66 4.94
2855 5855 6.767902 TGTGCTAGAAATTTGGGATCAGTATC 59.232 38.462 0.00 0.00 0.00 2.24
2856 5856 6.543831 GTGTGCTAGAAATTTGGGATCAGTAT 59.456 38.462 0.00 0.00 0.00 2.12
2857 5857 5.880332 GTGTGCTAGAAATTTGGGATCAGTA 59.120 40.000 0.00 0.00 0.00 2.74
2858 5858 4.702131 GTGTGCTAGAAATTTGGGATCAGT 59.298 41.667 0.00 0.00 0.00 3.41
2859 5859 4.096984 GGTGTGCTAGAAATTTGGGATCAG 59.903 45.833 0.00 0.00 0.00 2.90
2860 5860 4.016444 GGTGTGCTAGAAATTTGGGATCA 58.984 43.478 0.00 0.00 0.00 2.92
2861 5861 3.381590 GGGTGTGCTAGAAATTTGGGATC 59.618 47.826 0.00 0.00 0.00 3.36
2862 5862 3.245586 TGGGTGTGCTAGAAATTTGGGAT 60.246 43.478 0.00 0.00 0.00 3.85
2863 5863 2.109128 TGGGTGTGCTAGAAATTTGGGA 59.891 45.455 0.00 0.00 0.00 4.37
2864 5864 2.231235 GTGGGTGTGCTAGAAATTTGGG 59.769 50.000 0.00 0.00 0.00 4.12
2865 5865 3.057315 CAGTGGGTGTGCTAGAAATTTGG 60.057 47.826 0.00 0.00 0.00 3.28
2866 5866 3.569701 ACAGTGGGTGTGCTAGAAATTTG 59.430 43.478 0.00 0.00 38.28 2.32
2867 5867 3.832527 ACAGTGGGTGTGCTAGAAATTT 58.167 40.909 0.00 0.00 38.28 1.82
2868 5868 3.508845 ACAGTGGGTGTGCTAGAAATT 57.491 42.857 0.00 0.00 38.28 1.82
2869 5869 4.634012 TTACAGTGGGTGTGCTAGAAAT 57.366 40.909 0.00 0.00 40.69 2.17
2870 5870 4.425180 TTTACAGTGGGTGTGCTAGAAA 57.575 40.909 0.00 0.00 40.69 2.52
2871 5871 4.425180 TTTTACAGTGGGTGTGCTAGAA 57.575 40.909 0.00 0.00 40.69 2.10
2872 5872 4.425180 TTTTTACAGTGGGTGTGCTAGA 57.575 40.909 0.00 0.00 40.69 2.43
2873 5873 6.811253 TTATTTTTACAGTGGGTGTGCTAG 57.189 37.500 0.00 0.00 40.69 3.42
2874 5874 8.865420 TTATTATTTTTACAGTGGGTGTGCTA 57.135 30.769 0.00 0.00 40.69 3.49
2875 5875 7.768807 TTATTATTTTTACAGTGGGTGTGCT 57.231 32.000 0.00 0.00 40.69 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.