Multiple sequence alignment - TraesCS6A01G390900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G390900 chr6A 100.000 7562 0 0 1 7562 605558645 605566206 0.000000e+00 13965.0
1 TraesCS6A01G390900 chr6A 86.862 1195 113 19 5364 6527 605858741 605859922 0.000000e+00 1297.0
2 TraesCS6A01G390900 chr6A 82.065 1104 147 30 2336 3437 605850504 605851558 0.000000e+00 894.0
3 TraesCS6A01G390900 chr6A 87.054 448 44 5 4334 4781 605852630 605853063 1.900000e-135 494.0
4 TraesCS6A01G390900 chr6A 89.097 321 33 2 5013 5332 605858429 605858748 1.530000e-106 398.0
5 TraesCS6A01G390900 chr6A 79.310 145 27 3 2021 2163 605849118 605849261 1.740000e-16 99.0
6 TraesCS6A01G390900 chr6D 93.049 6100 270 66 1327 7347 459836874 459842898 0.000000e+00 8774.0
7 TraesCS6A01G390900 chr6D 87.008 1193 116 18 5364 6527 459924514 459925696 0.000000e+00 1308.0
8 TraesCS6A01G390900 chr6D 82.116 1314 78 63 1 1249 459835557 459836778 0.000000e+00 979.0
9 TraesCS6A01G390900 chr6D 82.852 1108 135 32 2336 3436 459921506 459922565 0.000000e+00 942.0
10 TraesCS6A01G390900 chr6D 86.703 549 52 10 4334 4876 459923572 459924105 2.350000e-164 590.0
11 TraesCS6A01G390900 chr6D 88.547 358 36 4 4976 5332 459924168 459924521 5.420000e-116 429.0
12 TraesCS6A01G390900 chr6D 88.350 309 29 4 3952 4257 459923272 459923576 1.550000e-96 364.0
13 TraesCS6A01G390900 chr6D 81.707 328 37 13 6185 6496 460281549 460281229 1.260000e-62 252.0
14 TraesCS6A01G390900 chr6D 83.128 243 26 9 3678 3909 459923040 459923278 2.770000e-49 207.0
15 TraesCS6A01G390900 chr6D 77.093 227 42 4 1680 1906 459919244 459919460 1.030000e-23 122.0
16 TraesCS6A01G390900 chr6D 79.310 145 27 3 2021 2163 459920521 459920664 1.740000e-16 99.0
17 TraesCS6A01G390900 chr6B 93.106 4540 229 42 2151 6652 699201417 699205910 0.000000e+00 6573.0
18 TraesCS6A01G390900 chr6B 89.497 914 85 6 5388 6297 699606765 699607671 0.000000e+00 1146.0
19 TraesCS6A01G390900 chr6B 83.981 1055 131 21 2336 3380 699538741 699539767 0.000000e+00 977.0
20 TraesCS6A01G390900 chr6B 79.491 1531 129 71 754 2162 699199902 699201369 0.000000e+00 917.0
21 TraesCS6A01G390900 chr6B 84.785 769 79 18 5364 6131 699542110 699542841 0.000000e+00 737.0
22 TraesCS6A01G390900 chr6B 85.896 709 52 20 1 694 699199209 699199884 0.000000e+00 712.0
23 TraesCS6A01G390900 chr6B 84.151 713 79 19 6641 7347 699205924 699206608 0.000000e+00 660.0
24 TraesCS6A01G390900 chr6B 84.084 666 79 8 2715 3374 699604626 699605270 1.080000e-172 617.0
25 TraesCS6A01G390900 chr6B 86.339 549 55 9 4334 4876 699605672 699606206 1.410000e-161 580.0
26 TraesCS6A01G390900 chr6B 85.610 549 58 10 4334 4876 699540871 699541404 2.380000e-154 556.0
27 TraesCS6A01G390900 chr6B 88.529 340 36 3 4995 5332 699541779 699542117 7.060000e-110 409.0
28 TraesCS6A01G390900 chr6B 88.103 311 31 3 3952 4260 699605373 699605679 1.550000e-96 364.0
29 TraesCS6A01G390900 chr6B 86.462 325 23 4 6293 6598 699609932 699610254 3.380000e-88 337.0
30 TraesCS6A01G390900 chr6B 92.273 220 17 0 7343 7562 699208138 699208357 5.700000e-81 313.0
31 TraesCS6A01G390900 chr6B 87.365 277 25 6 104 372 714721775 714721501 7.370000e-80 309.0
32 TraesCS6A01G390900 chr6B 84.739 249 17 10 356 600 714721478 714721247 5.900000e-56 230.0
33 TraesCS6A01G390900 chr6B 87.113 194 24 1 4995 5188 699606571 699606763 1.280000e-52 219.0
34 TraesCS6A01G390900 chr6B 83.128 243 26 7 3678 3909 699540339 699540577 2.770000e-49 207.0
35 TraesCS6A01G390900 chr6B 89.209 139 11 2 6772 6909 699611175 699611310 3.630000e-38 171.0
36 TraesCS6A01G390900 chr6B 98.649 74 1 0 20 93 714721979 714721906 1.710000e-26 132.0
37 TraesCS6A01G390900 chr6B 76.211 227 44 4 1680 1906 699591675 699591891 2.230000e-20 111.0
38 TraesCS6A01G390900 chr6B 82.031 128 23 0 1779 1906 699536176 699536303 8.020000e-20 110.0
39 TraesCS6A01G390900 chr6B 79.452 146 25 5 2021 2163 699537355 699537498 1.740000e-16 99.0
40 TraesCS6A01G390900 chr6B 78.906 128 24 3 2021 2146 699537678 699537804 4.860000e-12 84.2
41 TraesCS6A01G390900 chr6B 83.696 92 11 3 2075 2163 699593303 699593393 4.860000e-12 84.2
42 TraesCS6A01G390900 chr6B 81.522 92 14 3 2074 2163 699592973 699593063 1.050000e-08 73.1
43 TraesCS6A01G390900 chr3B 78.329 383 40 12 1367 1733 42091320 42091675 2.770000e-49 207.0
44 TraesCS6A01G390900 chr3B 78.068 383 41 13 1367 1733 42064926 42065281 1.290000e-47 202.0
45 TraesCS6A01G390900 chrUn 78.068 383 41 13 1367 1733 305871854 305872209 1.290000e-47 202.0
46 TraesCS6A01G390900 chr5B 100.000 30 0 0 501 530 621779426 621779455 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G390900 chr6A 605558645 605566206 7561 False 13965.000000 13965 100.000000 1 7562 1 chr6A.!!$F1 7561
1 TraesCS6A01G390900 chr6A 605858429 605859922 1493 False 847.500000 1297 87.979500 5013 6527 2 chr6A.!!$F3 1514
2 TraesCS6A01G390900 chr6A 605849118 605853063 3945 False 495.666667 894 82.809667 2021 4781 3 chr6A.!!$F2 2760
3 TraesCS6A01G390900 chr6D 459835557 459842898 7341 False 4876.500000 8774 87.582500 1 7347 2 chr6D.!!$F1 7346
4 TraesCS6A01G390900 chr6D 459919244 459925696 6452 False 507.625000 1308 84.123875 1680 6527 8 chr6D.!!$F2 4847
5 TraesCS6A01G390900 chr6B 699199209 699208357 9148 False 1835.000000 6573 86.983400 1 7562 5 chr6B.!!$F1 7561
6 TraesCS6A01G390900 chr6B 699604626 699611310 6684 False 490.571429 1146 87.258143 2715 6909 7 chr6B.!!$F4 4194
7 TraesCS6A01G390900 chr6B 699536176 699542841 6665 False 397.400000 977 83.302750 1779 6131 8 chr6B.!!$F2 4352
8 TraesCS6A01G390900 chr6B 714721247 714721979 732 True 223.666667 309 90.251000 20 600 3 chr6B.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1068 0.189822 ATCTACCCCTCCTCTCTGGC 59.810 60.000 0.00 0.0 35.26 4.85 F
1954 2293 0.030235 CGCGGATAATGACCAGTCGA 59.970 55.000 0.00 0.0 0.00 4.20 F
2793 5400 0.179936 CATCCCTGCCTCCAGTTCTC 59.820 60.000 0.00 0.0 37.38 2.87 F
3135 5748 1.467713 GCTTTCTCACTCGTCCTACCG 60.468 57.143 0.00 0.0 0.00 4.02 F
4091 7211 1.334054 GCTCAATGCTTGCTTGAACG 58.666 50.000 8.15 0.0 38.95 3.95 F
4092 7212 1.973138 CTCAATGCTTGCTTGAACGG 58.027 50.000 8.15 0.0 32.53 4.44 F
4247 7369 2.264005 TACGGTTTCCACACAGCATT 57.736 45.000 0.00 0.0 0.00 3.56 F
5759 9196 1.577328 CGTGCACCTTCGGAATGCTT 61.577 55.000 12.15 0.0 40.13 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 3359 1.070758 ACGTGGACAGACAGAAGCAAT 59.929 47.619 0.00 0.0 0.00 3.56 R
3546 6604 0.529337 CGGCCACTGAGATAGCACTG 60.529 60.000 2.24 0.0 0.00 3.66 R
4078 7198 1.066908 CCTTTTCCGTTCAAGCAAGCA 59.933 47.619 0.00 0.0 0.00 3.91 R
4615 7737 3.575687 CTGCTTTTGTTTTCCTCCTGGAT 59.424 43.478 0.00 0.0 42.81 3.41 R
5274 8711 0.322008 CAAACTGGACTCAGGAGCCC 60.322 60.000 0.00 0.0 44.99 5.19 R
5543 8980 0.324943 TTAGCAAGGTCCTCAGCCAC 59.675 55.000 11.56 0.0 0.00 5.01 R
5946 9386 0.400213 TGGTAGTTCTTGGCACCAGG 59.600 55.000 0.00 0.0 36.15 4.45 R
7138 13691 0.174162 GGCATCAATGTGCAAGGTCC 59.826 55.000 9.30 0.0 46.81 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 6.542005 CCATATACCAAAGTGACATTGTGCTA 59.458 38.462 0.00 0.00 0.00 3.49
109 110 5.880054 ATACCAAAGTGACATTGTGCTAC 57.120 39.130 0.00 0.00 0.00 3.58
141 262 3.449377 TCCTGTGTCTGTGTTTGTCTACA 59.551 43.478 0.00 0.00 0.00 2.74
150 271 6.197096 GTCTGTGTTTGTCTACAAAAATGCTG 59.803 38.462 9.72 5.57 46.08 4.41
217 338 1.328680 CTATGAGTGTGCCGCATTGTC 59.671 52.381 0.00 0.00 35.09 3.18
260 381 3.489059 CGCTTTGGATTCAAGTTGTGTGT 60.489 43.478 2.11 0.00 33.98 3.72
327 453 2.227388 CTCTTCAGTGGTGTGGCATTTC 59.773 50.000 0.00 0.00 0.00 2.17
340 466 4.134563 GTGGCATTTCACCTCGGTATATT 58.865 43.478 0.00 0.00 0.00 1.28
399 569 1.222113 GGAGTGGGTTCTAGGCTGC 59.778 63.158 0.00 0.00 0.00 5.25
423 593 0.798776 CACCATCTGAGTGCGGTTTC 59.201 55.000 0.00 0.00 0.00 2.78
438 608 2.096417 CGGTTTCTTTGCTTGTACTCCG 60.096 50.000 0.00 0.00 0.00 4.63
441 611 3.746045 TTCTTTGCTTGTACTCCGTCT 57.254 42.857 0.00 0.00 0.00 4.18
445 616 4.038282 TCTTTGCTTGTACTCCGTCTGTTA 59.962 41.667 0.00 0.00 0.00 2.41
450 621 5.009911 TGCTTGTACTCCGTCTGTTAGTAAA 59.990 40.000 0.00 0.00 0.00 2.01
451 622 5.344396 GCTTGTACTCCGTCTGTTAGTAAAC 59.656 44.000 0.00 0.00 36.07 2.01
455 626 5.526506 ACTCCGTCTGTTAGTAAACAAGT 57.473 39.130 0.00 0.00 44.79 3.16
459 630 5.045215 CCGTCTGTTAGTAAACAAGTGACA 58.955 41.667 8.76 0.00 44.79 3.58
465 636 7.554835 TCTGTTAGTAAACAAGTGACATGGTTT 59.445 33.333 0.00 0.80 44.79 3.27
466 637 8.057536 TGTTAGTAAACAAGTGACATGGTTTT 57.942 30.769 0.00 0.00 42.60 2.43
467 638 9.175312 TGTTAGTAAACAAGTGACATGGTTTTA 57.825 29.630 0.00 0.00 42.60 1.52
471 642 9.744468 AGTAAACAAGTGACATGGTTTTATTTC 57.256 29.630 0.00 0.00 35.33 2.17
472 643 9.522804 GTAAACAAGTGACATGGTTTTATTTCA 57.477 29.630 0.00 0.00 35.33 2.69
474 645 9.442047 AAACAAGTGACATGGTTTTATTTCAAA 57.558 25.926 0.00 0.00 29.77 2.69
552 740 6.456795 AGTTAAAGAAGAAAGCTGCAAGTT 57.543 33.333 1.02 0.00 35.30 2.66
553 741 6.268566 AGTTAAAGAAGAAAGCTGCAAGTTG 58.731 36.000 1.02 0.00 35.30 3.16
554 742 4.989279 AAAGAAGAAAGCTGCAAGTTGA 57.011 36.364 7.16 0.00 35.30 3.18
555 743 3.978718 AGAAGAAAGCTGCAAGTTGAC 57.021 42.857 7.16 0.00 35.30 3.18
556 744 3.282021 AGAAGAAAGCTGCAAGTTGACA 58.718 40.909 7.16 3.48 35.30 3.58
557 745 3.065925 AGAAGAAAGCTGCAAGTTGACAC 59.934 43.478 7.16 0.00 35.30 3.67
558 746 1.678101 AGAAAGCTGCAAGTTGACACC 59.322 47.619 7.16 0.00 35.30 4.16
559 747 1.405105 GAAAGCTGCAAGTTGACACCA 59.595 47.619 7.16 0.00 35.30 4.17
560 748 1.027357 AAGCTGCAAGTTGACACCAG 58.973 50.000 7.16 5.48 35.30 4.00
561 749 0.820891 AGCTGCAAGTTGACACCAGG 60.821 55.000 7.16 0.00 35.30 4.45
562 750 1.103398 GCTGCAAGTTGACACCAGGT 61.103 55.000 7.16 0.00 35.30 4.00
583 775 5.484998 AGGTAGAATACTAAAAACCCACCGA 59.515 40.000 0.00 0.00 42.51 4.69
593 785 0.948678 AACCCACCGATTCAACAACG 59.051 50.000 0.00 0.00 0.00 4.10
602 798 6.140110 CACCGATTCAACAACGATTTTAACT 58.860 36.000 0.00 0.00 0.00 2.24
608 804 7.439204 TTCAACAACGATTTTAACTTTTCCG 57.561 32.000 0.00 0.00 0.00 4.30
615 811 4.089351 CGATTTTAACTTTTCCGCGCAAAT 59.911 37.500 8.75 1.02 0.00 2.32
616 812 4.957832 TTTTAACTTTTCCGCGCAAATC 57.042 36.364 8.75 0.00 0.00 2.17
618 814 2.050477 AACTTTTCCGCGCAAATCTG 57.950 45.000 8.75 0.00 0.00 2.90
619 815 1.234821 ACTTTTCCGCGCAAATCTGA 58.765 45.000 8.75 0.00 0.00 3.27
620 816 1.812571 ACTTTTCCGCGCAAATCTGAT 59.187 42.857 8.75 0.00 0.00 2.90
621 817 2.228822 ACTTTTCCGCGCAAATCTGATT 59.771 40.909 8.75 0.00 0.00 2.57
622 818 2.261037 TTTCCGCGCAAATCTGATTG 57.739 45.000 8.75 0.13 0.00 2.67
623 819 1.447945 TTCCGCGCAAATCTGATTGA 58.552 45.000 8.75 0.00 31.84 2.57
642 838 8.463930 TGATTGAGATTTGTTAGTTTTGACCT 57.536 30.769 0.00 0.00 0.00 3.85
645 841 7.038154 TGAGATTTGTTAGTTTTGACCTTGG 57.962 36.000 0.00 0.00 0.00 3.61
650 846 3.053544 TGTTAGTTTTGACCTTGGGACCA 60.054 43.478 0.00 0.00 0.00 4.02
651 847 2.067365 AGTTTTGACCTTGGGACCAC 57.933 50.000 0.00 0.00 0.00 4.16
652 848 1.037493 GTTTTGACCTTGGGACCACC 58.963 55.000 0.00 0.00 40.81 4.61
666 862 4.543590 GGACCACCCACAGATATAGATG 57.456 50.000 0.00 0.00 34.14 2.90
667 863 3.307059 GGACCACCCACAGATATAGATGC 60.307 52.174 0.00 0.00 34.14 3.91
669 865 3.326006 ACCACCCACAGATATAGATGCTG 59.674 47.826 0.00 0.00 35.81 4.41
678 874 7.148672 CCACAGATATAGATGCTGATTTCGAAC 60.149 40.741 0.00 0.00 33.94 3.95
698 894 3.165498 GCAGCAGCAAAGCAATGC 58.835 55.556 0.00 0.00 46.78 3.56
863 1068 0.189822 ATCTACCCCTCCTCTCTGGC 59.810 60.000 0.00 0.00 35.26 4.85
864 1069 1.458588 CTACCCCTCCTCTCTGGCC 60.459 68.421 0.00 0.00 35.26 5.36
865 1070 1.941820 TACCCCTCCTCTCTGGCCT 60.942 63.158 3.32 0.00 35.26 5.19
867 1072 3.478274 CCCTCCTCTCTGGCCTGC 61.478 72.222 3.32 0.00 35.26 4.85
868 1073 3.847602 CCTCCTCTCTGGCCTGCG 61.848 72.222 3.32 0.00 35.26 5.18
929 1147 0.593128 CGCTGGAAAAAGTGGTGAGG 59.407 55.000 0.00 0.00 0.00 3.86
937 1158 5.010922 TGGAAAAAGTGGTGAGGAATGAATG 59.989 40.000 0.00 0.00 0.00 2.67
938 1159 5.243730 GGAAAAAGTGGTGAGGAATGAATGA 59.756 40.000 0.00 0.00 0.00 2.57
939 1160 6.239289 GGAAAAAGTGGTGAGGAATGAATGAA 60.239 38.462 0.00 0.00 0.00 2.57
940 1161 6.923199 AAAAGTGGTGAGGAATGAATGAAT 57.077 33.333 0.00 0.00 0.00 2.57
941 1162 8.421249 AAAAAGTGGTGAGGAATGAATGAATA 57.579 30.769 0.00 0.00 0.00 1.75
942 1163 7.396540 AAAGTGGTGAGGAATGAATGAATAC 57.603 36.000 0.00 0.00 0.00 1.89
1000 1249 2.544726 AAAAAGAGGAAGGCGAGCG 58.455 52.632 0.00 0.00 0.00 5.03
1001 1250 0.034896 AAAAAGAGGAAGGCGAGCGA 59.965 50.000 0.00 0.00 0.00 4.93
1043 1292 2.760385 CCCTGTCCCTCTCCGACC 60.760 72.222 0.00 0.00 0.00 4.79
1044 1293 2.760385 CCTGTCCCTCTCCGACCC 60.760 72.222 0.00 0.00 0.00 4.46
1045 1294 2.760385 CTGTCCCTCTCCGACCCC 60.760 72.222 0.00 0.00 0.00 4.95
1046 1295 4.753662 TGTCCCTCTCCGACCCCG 62.754 72.222 0.00 0.00 0.00 5.73
1095 1344 1.067776 CCGTATCGAGGTAATGGGCTC 60.068 57.143 0.00 0.00 0.00 4.70
1096 1345 1.067776 CGTATCGAGGTAATGGGCTCC 60.068 57.143 0.00 0.00 0.00 4.70
1097 1346 2.249139 GTATCGAGGTAATGGGCTCCT 58.751 52.381 0.00 0.00 0.00 3.69
1098 1347 1.807814 ATCGAGGTAATGGGCTCCTT 58.192 50.000 0.00 0.00 0.00 3.36
1099 1348 1.120530 TCGAGGTAATGGGCTCCTTC 58.879 55.000 0.00 0.00 0.00 3.46
1100 1349 0.106894 CGAGGTAATGGGCTCCTTCC 59.893 60.000 0.00 0.00 0.00 3.46
1101 1350 1.512735 GAGGTAATGGGCTCCTTCCT 58.487 55.000 0.00 0.00 0.00 3.36
1102 1351 1.418264 GAGGTAATGGGCTCCTTCCTC 59.582 57.143 5.00 5.00 34.30 3.71
1205 1463 2.114199 TTGGCGCCTGCTGGTTTA 59.886 55.556 29.70 0.00 42.25 2.01
1206 1464 1.304052 TTGGCGCCTGCTGGTTTAT 60.304 52.632 29.70 0.00 42.25 1.40
1207 1465 0.897863 TTGGCGCCTGCTGGTTTATT 60.898 50.000 29.70 0.00 42.25 1.40
1209 1467 1.062525 GCGCCTGCTGGTTTATTCG 59.937 57.895 11.69 6.14 38.39 3.34
1210 1468 1.062525 CGCCTGCTGGTTTATTCGC 59.937 57.895 11.69 0.00 35.27 4.70
1213 1471 0.394352 CCTGCTGGTTTATTCGCCCT 60.394 55.000 0.51 0.00 0.00 5.19
1214 1472 0.734889 CTGCTGGTTTATTCGCCCTG 59.265 55.000 0.00 0.00 0.00 4.45
1215 1473 0.037590 TGCTGGTTTATTCGCCCTGT 59.962 50.000 0.00 0.00 0.00 4.00
1218 1476 2.671070 GCTGGTTTATTCGCCCTGTTTG 60.671 50.000 0.00 0.00 0.00 2.93
1221 1479 4.142790 TGGTTTATTCGCCCTGTTTGTTA 58.857 39.130 0.00 0.00 0.00 2.41
1222 1480 4.216687 TGGTTTATTCGCCCTGTTTGTTAG 59.783 41.667 0.00 0.00 0.00 2.34
1244 1504 1.304134 GGTGGCGTGGAAAAGGGAT 60.304 57.895 0.00 0.00 0.00 3.85
1248 1508 2.052104 GCGTGGAAAAGGGATGGGG 61.052 63.158 0.00 0.00 0.00 4.96
1249 1509 1.379843 CGTGGAAAAGGGATGGGGG 60.380 63.158 0.00 0.00 0.00 5.40
1250 1510 1.685765 GTGGAAAAGGGATGGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
1251 1511 2.173299 TGGAAAAGGGATGGGGGCA 61.173 57.895 0.00 0.00 0.00 5.36
1252 1512 1.080170 GGAAAAGGGATGGGGGCAA 59.920 57.895 0.00 0.00 0.00 4.52
1253 1513 0.977627 GGAAAAGGGATGGGGGCAAG 60.978 60.000 0.00 0.00 0.00 4.01
1254 1514 0.977627 GAAAAGGGATGGGGGCAAGG 60.978 60.000 0.00 0.00 0.00 3.61
1255 1515 1.451372 AAAAGGGATGGGGGCAAGGA 61.451 55.000 0.00 0.00 0.00 3.36
1256 1516 1.878799 AAAGGGATGGGGGCAAGGAG 61.879 60.000 0.00 0.00 0.00 3.69
1257 1517 4.529731 GGGATGGGGGCAAGGAGC 62.530 72.222 0.00 0.00 44.65 4.70
1276 1539 4.232248 GTGCCGCCGCCGTTATTC 62.232 66.667 0.00 0.00 0.00 1.75
1290 1553 0.934496 TTATTCGCCATTTCGCTCCG 59.066 50.000 0.00 0.00 0.00 4.63
1321 1584 0.321830 TTCCAACGGGATTCGGTTCC 60.322 55.000 0.00 0.00 44.48 3.62
1322 1585 3.964641 TTCCAACGGGATTCGGTTCCG 62.965 57.143 4.74 4.74 44.48 4.30
1325 1588 3.777910 CGGGATTCGGTTCCGGGT 61.778 66.667 11.37 0.51 40.07 5.28
1326 1589 2.124860 GGGATTCGGTTCCGGGTG 60.125 66.667 11.37 0.00 36.58 4.61
1327 1590 2.124860 GGATTCGGTTCCGGGTGG 60.125 66.667 11.37 0.00 0.00 4.61
1341 1635 1.227853 GGTGGAGTTTCTGGCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
1360 1655 1.450669 GCGGAATTGGGGTTCGCTA 60.451 57.895 0.00 0.00 0.00 4.26
1365 1660 1.681264 GAATTGGGGTTCGCTAATGGG 59.319 52.381 0.07 0.00 0.00 4.00
1392 1687 3.378339 CGTTCGAGTTGTTTCTGTAGGT 58.622 45.455 0.00 0.00 0.00 3.08
1394 1689 4.117685 GTTCGAGTTGTTTCTGTAGGTGT 58.882 43.478 0.00 0.00 0.00 4.16
1424 1719 3.937447 GGGGCGATTAGGGTCGGG 61.937 72.222 0.00 0.00 41.72 5.14
1455 1750 1.464608 CCATGTGCGTTTCAGTTCGAT 59.535 47.619 0.00 0.00 0.00 3.59
1495 1791 0.759959 TGCGGTGGGTTCTCTGTTTA 59.240 50.000 0.00 0.00 0.00 2.01
1496 1792 1.270625 TGCGGTGGGTTCTCTGTTTAG 60.271 52.381 0.00 0.00 0.00 1.85
1497 1793 1.001633 GCGGTGGGTTCTCTGTTTAGA 59.998 52.381 0.00 0.00 0.00 2.10
1498 1794 2.685100 CGGTGGGTTCTCTGTTTAGAC 58.315 52.381 0.00 0.00 0.00 2.59
1543 1846 4.512914 GGATGGGGGAGTGCTGCC 62.513 72.222 0.76 0.76 40.73 4.85
1570 1873 6.166982 AGCTTTACTTGTTACTGATGGAGAC 58.833 40.000 0.00 0.00 0.00 3.36
1574 1877 4.899502 ACTTGTTACTGATGGAGACTTGG 58.100 43.478 0.00 0.00 0.00 3.61
1604 1907 0.850784 ATAGGTGGGCATGGGGTTAC 59.149 55.000 0.00 0.00 0.00 2.50
1624 1939 7.988028 GGGTTACTAGTTAGCATCTTCTCATTT 59.012 37.037 12.61 0.00 0.00 2.32
1640 1955 8.007153 TCTTCTCATTTCTGTATGGAGAGGATA 58.993 37.037 0.00 0.00 0.00 2.59
1642 1957 6.723515 TCTCATTTCTGTATGGAGAGGATAGG 59.276 42.308 0.00 0.00 0.00 2.57
1643 1958 5.247110 TCATTTCTGTATGGAGAGGATAGGC 59.753 44.000 0.00 0.00 0.00 3.93
1644 1959 3.176924 TCTGTATGGAGAGGATAGGCC 57.823 52.381 0.00 0.00 0.00 5.19
1652 1967 1.531840 GAGGATAGGCCGAGGCTCA 60.532 63.158 15.95 2.43 43.43 4.26
1659 1974 2.107953 GCCGAGGCTCATGTCCTC 59.892 66.667 15.95 19.90 45.12 3.71
1702 2017 1.293267 TGCGACGAAACCCCGATTTC 61.293 55.000 0.00 0.00 35.59 2.17
1704 2019 0.997196 CGACGAAACCCCGATTTCTC 59.003 55.000 0.00 0.00 36.59 2.87
1740 2055 4.987285 CCAGGAGATTAATCACAGTCATCG 59.013 45.833 17.56 0.00 0.00 3.84
1745 2060 7.278868 AGGAGATTAATCACAGTCATCGTTTTC 59.721 37.037 17.56 1.31 0.00 2.29
1755 2091 7.441157 TCACAGTCATCGTTTTCTTCTGTTATT 59.559 33.333 0.00 0.00 33.35 1.40
1756 2092 8.708742 CACAGTCATCGTTTTCTTCTGTTATTA 58.291 33.333 0.00 0.00 33.35 0.98
1757 2093 8.709646 ACAGTCATCGTTTTCTTCTGTTATTAC 58.290 33.333 0.00 0.00 31.95 1.89
1837 2173 2.457366 CTACAAGAGGAAGCGTGGTT 57.543 50.000 0.00 0.00 0.00 3.67
1872 2208 4.819761 GCTGATGGCGCGACTCCA 62.820 66.667 15.80 10.46 38.09 3.86
1873 2209 2.125552 CTGATGGCGCGACTCCAA 60.126 61.111 15.80 0.00 37.13 3.53
1876 2212 1.741770 GATGGCGCGACTCCAAAGT 60.742 57.895 15.80 0.00 37.13 2.66
1877 2213 1.970917 GATGGCGCGACTCCAAAGTG 61.971 60.000 15.80 0.00 37.13 3.16
1906 2242 1.422977 TTCTAGCAGTGGGGTTGCCA 61.423 55.000 0.00 0.00 42.48 4.92
1907 2243 1.675641 CTAGCAGTGGGGTTGCCAC 60.676 63.158 0.00 0.00 42.48 5.01
1949 2288 1.066752 CGGACGCGGATAATGACCA 59.933 57.895 12.47 0.00 0.00 4.02
1952 2291 1.488527 GACGCGGATAATGACCAGTC 58.511 55.000 12.47 0.00 0.00 3.51
1954 2293 0.030235 CGCGGATAATGACCAGTCGA 59.970 55.000 0.00 0.00 0.00 4.20
1955 2294 1.535226 CGCGGATAATGACCAGTCGAA 60.535 52.381 0.00 0.00 0.00 3.71
1956 2295 1.859080 GCGGATAATGACCAGTCGAAC 59.141 52.381 0.00 0.00 0.00 3.95
1957 2296 2.117137 CGGATAATGACCAGTCGAACG 58.883 52.381 0.00 0.00 0.00 3.95
1959 2298 2.100252 GGATAATGACCAGTCGAACGGA 59.900 50.000 8.32 0.00 0.00 4.69
1960 2299 3.243771 GGATAATGACCAGTCGAACGGAT 60.244 47.826 8.32 0.00 0.00 4.18
1962 2301 5.336531 GGATAATGACCAGTCGAACGGATAT 60.337 44.000 8.32 0.11 0.00 1.63
1963 2302 2.863401 TGACCAGTCGAACGGATATG 57.137 50.000 8.32 0.00 0.00 1.78
1964 2303 2.097036 TGACCAGTCGAACGGATATGT 58.903 47.619 8.32 0.00 0.00 2.29
1965 2304 2.494471 TGACCAGTCGAACGGATATGTT 59.506 45.455 8.32 0.00 34.02 2.71
1966 2305 3.114065 GACCAGTCGAACGGATATGTTC 58.886 50.000 8.32 0.00 43.76 3.18
1967 2306 2.494471 ACCAGTCGAACGGATATGTTCA 59.506 45.455 8.32 0.00 46.77 3.18
1968 2307 3.132289 ACCAGTCGAACGGATATGTTCAT 59.868 43.478 8.32 0.00 46.77 2.57
1969 2308 3.490896 CCAGTCGAACGGATATGTTCATG 59.509 47.826 7.33 0.00 46.77 3.07
1970 2309 4.112634 CAGTCGAACGGATATGTTCATGT 58.887 43.478 7.33 0.00 46.77 3.21
1971 2310 5.278604 CAGTCGAACGGATATGTTCATGTA 58.721 41.667 7.33 0.00 46.77 2.29
1972 2311 5.746721 CAGTCGAACGGATATGTTCATGTAA 59.253 40.000 7.33 0.00 46.77 2.41
1973 2312 5.977725 AGTCGAACGGATATGTTCATGTAAG 59.022 40.000 7.33 0.00 46.77 2.34
1974 2313 5.175126 GTCGAACGGATATGTTCATGTAAGG 59.825 44.000 7.33 0.00 46.77 2.69
1975 2314 5.068067 TCGAACGGATATGTTCATGTAAGGA 59.932 40.000 7.33 0.00 46.77 3.36
1976 2315 5.751509 CGAACGGATATGTTCATGTAAGGAA 59.248 40.000 7.33 0.00 46.77 3.36
1986 2325 4.974645 TCATGTAAGGAACCTTGAGTGT 57.025 40.909 15.37 0.00 37.47 3.55
1988 2327 5.305585 TCATGTAAGGAACCTTGAGTGTTC 58.694 41.667 15.37 0.00 41.05 3.18
1989 2328 5.071788 TCATGTAAGGAACCTTGAGTGTTCT 59.928 40.000 15.37 0.00 41.42 3.01
1994 2333 3.576550 AGGAACCTTGAGTGTTCTCTCTC 59.423 47.826 0.00 0.00 41.42 3.20
1996 2335 4.039852 GGAACCTTGAGTGTTCTCTCTCTT 59.960 45.833 0.00 0.00 41.42 2.85
2001 2340 4.862902 TGAGTGTTCTCTCTCTTTCCTG 57.137 45.455 4.06 0.00 40.98 3.86
2010 2349 2.225963 TCTCTCTTTCCTGTTCGTCGTC 59.774 50.000 0.00 0.00 0.00 4.20
2011 2350 1.951602 TCTCTTTCCTGTTCGTCGTCA 59.048 47.619 0.00 0.00 0.00 4.35
2016 2355 3.759527 TTCCTGTTCGTCGTCATAGAG 57.240 47.619 0.00 0.00 0.00 2.43
2019 2358 4.256110 TCCTGTTCGTCGTCATAGAGTTA 58.744 43.478 0.00 0.00 0.00 2.24
2025 3343 7.255569 TGTTCGTCGTCATAGAGTTATTGATT 58.744 34.615 0.00 0.00 0.00 2.57
2202 4795 1.112315 TGGTTTGGCTGGTTTCGCAT 61.112 50.000 0.00 0.00 0.00 4.73
2207 4800 2.125952 GCTGGTTTCGCATTGGCC 60.126 61.111 0.00 0.00 36.38 5.36
2212 4805 2.281831 TTTCGCATTGGCCGTGGA 60.282 55.556 9.69 3.31 36.38 4.02
2217 4810 2.046023 CATTGGCCGTGGAGCTGA 60.046 61.111 0.00 0.00 0.00 4.26
2252 4845 8.818057 AGATAAATACTTAGTAGTTGCTTTGCG 58.182 33.333 14.28 0.00 35.78 4.85
2269 4862 2.950433 TGCGTTGGTAGTAGCTTGTAC 58.050 47.619 0.00 0.00 0.00 2.90
2384 4978 8.843262 TGAAAATATCAATAGCTGGATGTTCTG 58.157 33.333 0.00 0.00 34.30 3.02
2393 4987 8.719648 CAATAGCTGGATGTTCTGAGAATATTC 58.280 37.037 7.41 7.41 0.00 1.75
2519 5117 9.064706 CATCATCTACCTTCTTTTGCATCTTAT 57.935 33.333 0.00 0.00 0.00 1.73
2520 5118 9.638176 ATCATCTACCTTCTTTTGCATCTTATT 57.362 29.630 0.00 0.00 0.00 1.40
2747 5354 4.730613 GCAGAGGCGTGTAATGGTAAATTG 60.731 45.833 0.00 0.00 0.00 2.32
2783 5390 1.986882 CAGTTAATCCCATCCCTGCC 58.013 55.000 0.00 0.00 0.00 4.85
2793 5400 0.179936 CATCCCTGCCTCCAGTTCTC 59.820 60.000 0.00 0.00 37.38 2.87
3135 5748 1.467713 GCTTTCTCACTCGTCCTACCG 60.468 57.143 0.00 0.00 0.00 4.02
3136 5749 1.811359 CTTTCTCACTCGTCCTACCGT 59.189 52.381 0.00 0.00 0.00 4.83
3267 5881 7.668052 TGAATATGGTAAGTTAACAACAAGGCT 59.332 33.333 4.39 0.00 0.00 4.58
4078 7198 5.435686 TGGATTAACTGTACCAGCTCAAT 57.564 39.130 0.00 0.00 34.37 2.57
4091 7211 1.334054 GCTCAATGCTTGCTTGAACG 58.666 50.000 8.15 0.00 38.95 3.95
4092 7212 1.973138 CTCAATGCTTGCTTGAACGG 58.027 50.000 8.15 0.00 32.53 4.44
4182 7304 7.383687 ACTTACATGTTCGAAGGACTAATTCA 58.616 34.615 2.30 0.00 0.00 2.57
4247 7369 2.264005 TACGGTTTCCACACAGCATT 57.736 45.000 0.00 0.00 0.00 3.56
4288 7410 2.396590 TAACTTCAGAACGGGATGGC 57.603 50.000 0.00 0.00 0.00 4.40
4614 7736 6.983906 AATTCAAAGGTTCCTGATCAAGTT 57.016 33.333 0.00 0.00 0.00 2.66
4615 7737 8.477419 AAATTCAAAGGTTCCTGATCAAGTTA 57.523 30.769 0.00 0.00 0.00 2.24
4767 7889 5.957798 ACAAAATCACATAGTTGGCTCATG 58.042 37.500 0.00 0.00 0.00 3.07
4863 7989 7.980742 ATTTTCAGTCAGTAAAACCGTTTTC 57.019 32.000 12.50 5.52 34.19 2.29
4945 8071 9.645128 TTGATATTTTATCAATCTGTGGATGGT 57.355 29.630 5.97 0.00 33.55 3.55
4986 8112 9.959721 TTTAATTCTATCTGAGTTTACAGGCTT 57.040 29.630 0.00 0.00 38.31 4.35
4987 8113 7.856145 AATTCTATCTGAGTTTACAGGCTTG 57.144 36.000 0.00 0.00 38.31 4.01
5182 8619 4.400884 TCAACATTGCATACATTGTACCCC 59.599 41.667 0.00 0.00 38.97 4.95
5194 8631 9.528018 CATACATTGTACCCCAATTTTTATGAC 57.472 33.333 0.00 0.00 41.93 3.06
5543 8980 2.447244 ACGGTTCTCAAGCTCAAGAG 57.553 50.000 4.82 4.82 0.00 2.85
5759 9196 1.577328 CGTGCACCTTCGGAATGCTT 61.577 55.000 12.15 0.00 40.13 3.91
5984 9424 2.364842 AGAGGATGCCGGCTCAGT 60.365 61.111 29.70 11.12 0.00 3.41
6004 9444 2.558359 GTTCCTTCCCATCAACCAACAG 59.442 50.000 0.00 0.00 0.00 3.16
6090 9530 2.809601 GATGTGGTCGAGCGCGTT 60.810 61.111 22.47 13.02 38.98 4.84
6187 9630 0.251922 AGAAACCACATGCCATGCCT 60.252 50.000 4.17 0.00 0.00 4.75
6262 9705 0.765510 AGAAGCTTTTCCGGACCAGT 59.234 50.000 1.83 0.00 0.00 4.00
6400 12140 0.392461 TCTTGCGCATGTTAGTCCCC 60.392 55.000 21.14 0.00 0.00 4.81
6411 12151 0.971386 TTAGTCCCCTCCGTTGTGTC 59.029 55.000 0.00 0.00 0.00 3.67
6529 12274 6.252599 TCTAGCATAACTGGAAATGATGGT 57.747 37.500 0.00 0.00 32.07 3.55
6531 12276 7.801104 TCTAGCATAACTGGAAATGATGGTTA 58.199 34.615 0.00 0.00 32.07 2.85
6532 12277 8.271458 TCTAGCATAACTGGAAATGATGGTTAA 58.729 33.333 0.00 0.00 32.07 2.01
6533 12278 7.902920 AGCATAACTGGAAATGATGGTTAAT 57.097 32.000 0.00 0.00 0.00 1.40
6534 12279 7.719483 AGCATAACTGGAAATGATGGTTAATG 58.281 34.615 0.00 0.00 0.00 1.90
6535 12280 6.925165 GCATAACTGGAAATGATGGTTAATGG 59.075 38.462 0.00 0.00 0.00 3.16
6536 12281 7.201902 GCATAACTGGAAATGATGGTTAATGGA 60.202 37.037 0.00 0.00 0.00 3.41
6537 12282 6.530019 AACTGGAAATGATGGTTAATGGAC 57.470 37.500 0.00 0.00 0.00 4.02
6568 12332 2.224305 GCTATCTACATCCCCAAGCGTT 60.224 50.000 0.00 0.00 0.00 4.84
6576 12340 2.604174 CCCCAAGCGTTGTGTCGTC 61.604 63.158 0.00 0.00 0.00 4.20
6598 12362 4.702131 TCTTTTGCTAAAGGAATGAGCTCC 59.298 41.667 18.49 0.00 40.93 4.70
6622 12386 0.322997 TGGCCATTGGGTTAGGTTCG 60.323 55.000 0.00 0.00 36.17 3.95
6624 12388 1.541379 GCCATTGGGTTAGGTTCGTT 58.459 50.000 4.53 0.00 36.17 3.85
6633 12397 8.899771 CATTGGGTTAGGTTCGTTTAAATCTAT 58.100 33.333 0.00 0.00 0.00 1.98
6634 12398 8.866970 TTGGGTTAGGTTCGTTTAAATCTATT 57.133 30.769 0.00 0.00 0.00 1.73
6635 12399 8.496707 TGGGTTAGGTTCGTTTAAATCTATTC 57.503 34.615 0.00 0.00 0.00 1.75
6663 12451 1.177401 GGTCCTTTGAGGGCAATGAC 58.823 55.000 0.52 0.00 43.30 3.06
6709 12497 4.511527 AGCGGATTGATATGATCATGGAC 58.488 43.478 18.72 9.56 39.39 4.02
6712 12500 5.650543 CGGATTGATATGATCATGGACGTA 58.349 41.667 18.72 0.00 39.39 3.57
6727 12515 2.645802 GACGTATGTCCTCTCCTCTGT 58.354 52.381 3.50 0.00 39.30 3.41
6729 12517 1.950909 CGTATGTCCTCTCCTCTGTCC 59.049 57.143 0.00 0.00 0.00 4.02
6730 12518 1.950909 GTATGTCCTCTCCTCTGTCCG 59.049 57.143 0.00 0.00 0.00 4.79
6731 12519 0.396417 ATGTCCTCTCCTCTGTCCGG 60.396 60.000 0.00 0.00 0.00 5.14
6732 12520 1.000646 GTCCTCTCCTCTGTCCGGT 60.001 63.158 0.00 0.00 0.00 5.28
6735 12523 0.612174 CCTCTCCTCTGTCCGGTTCA 60.612 60.000 0.00 1.24 0.00 3.18
6736 12524 1.257743 CTCTCCTCTGTCCGGTTCAA 58.742 55.000 0.00 0.00 0.00 2.69
6737 12525 1.827969 CTCTCCTCTGTCCGGTTCAAT 59.172 52.381 0.00 0.00 0.00 2.57
6738 12526 2.234908 CTCTCCTCTGTCCGGTTCAATT 59.765 50.000 0.00 0.00 0.00 2.32
6745 13269 6.990349 TCCTCTGTCCGGTTCAATTATATTTC 59.010 38.462 0.00 0.00 0.00 2.17
6765 13289 6.767524 TTTCTTTTAAGAGCACACCAAAGA 57.232 33.333 0.00 0.00 36.22 2.52
6829 13380 7.896811 AGGAGTCTATCATAAATGCGAACATA 58.103 34.615 0.00 0.00 34.62 2.29
6852 13403 3.545366 GGTAAACATGAGACCCTCTCC 57.455 52.381 0.00 0.00 42.73 3.71
6856 13407 5.367060 GGTAAACATGAGACCCTCTCCTTAT 59.633 44.000 0.00 0.00 42.73 1.73
6857 13408 6.126739 GGTAAACATGAGACCCTCTCCTTATT 60.127 42.308 0.00 0.00 42.73 1.40
6865 13416 3.519913 GACCCTCTCCTTATTCCAACACT 59.480 47.826 0.00 0.00 0.00 3.55
6867 13418 3.264450 CCCTCTCCTTATTCCAACACTGT 59.736 47.826 0.00 0.00 0.00 3.55
6922 13473 0.804156 GCAAACCACCAACACCAACG 60.804 55.000 0.00 0.00 0.00 4.10
6925 13476 3.601685 CCACCAACACCAACGCCC 61.602 66.667 0.00 0.00 0.00 6.13
6940 13491 3.121030 CCCGCTTGCCTTCACTCG 61.121 66.667 0.00 0.00 0.00 4.18
6952 13503 2.765250 TTCACTCGGCAACCTCGCTC 62.765 60.000 0.00 0.00 0.00 5.03
6976 13527 3.580458 ACACATGAGTAGATAGCCCCATC 59.420 47.826 0.00 0.00 0.00 3.51
7031 13584 2.565367 GCATTGCGTTGCTTTCAAAG 57.435 45.000 3.60 0.00 39.57 2.77
7044 13597 3.287222 CTTTCAAAGGGACCAAGTGACA 58.713 45.455 0.00 0.00 0.00 3.58
7045 13598 3.374042 TTCAAAGGGACCAAGTGACAA 57.626 42.857 0.00 0.00 0.00 3.18
7053 13606 3.191371 GGGACCAAGTGACAACAATGATC 59.809 47.826 0.00 0.00 0.00 2.92
7054 13607 3.820467 GGACCAAGTGACAACAATGATCA 59.180 43.478 0.00 0.00 0.00 2.92
7075 13628 0.318762 AGTGTCGAAACCTCTCCTGC 59.681 55.000 0.95 0.00 0.00 4.85
7083 13636 4.479993 CCTCTCCTGCCGCCCTTG 62.480 72.222 0.00 0.00 0.00 3.61
7111 13664 0.035458 CCTCCTTTCGCTCAACCACT 59.965 55.000 0.00 0.00 0.00 4.00
7116 13669 2.338500 CTTTCGCTCAACCACTACTCC 58.662 52.381 0.00 0.00 0.00 3.85
7117 13670 1.334160 TTCGCTCAACCACTACTCCA 58.666 50.000 0.00 0.00 0.00 3.86
7118 13671 1.334160 TCGCTCAACCACTACTCCAA 58.666 50.000 0.00 0.00 0.00 3.53
7120 13673 1.673033 CGCTCAACCACTACTCCAAGG 60.673 57.143 0.00 0.00 0.00 3.61
7121 13674 1.946283 GCTCAACCACTACTCCAAGGC 60.946 57.143 0.00 0.00 0.00 4.35
7122 13675 1.625818 CTCAACCACTACTCCAAGGCT 59.374 52.381 0.00 0.00 0.00 4.58
7123 13676 1.347707 TCAACCACTACTCCAAGGCTG 59.652 52.381 0.00 0.00 0.00 4.85
7124 13677 1.072331 CAACCACTACTCCAAGGCTGT 59.928 52.381 0.00 0.00 0.00 4.40
7126 13679 0.687354 CCACTACTCCAAGGCTGTGT 59.313 55.000 0.00 0.00 0.00 3.72
7127 13680 1.338200 CCACTACTCCAAGGCTGTGTC 60.338 57.143 0.00 0.00 0.00 3.67
7128 13681 0.977395 ACTACTCCAAGGCTGTGTCC 59.023 55.000 0.00 0.00 0.00 4.02
7129 13682 0.976641 CTACTCCAAGGCTGTGTCCA 59.023 55.000 0.00 0.00 0.00 4.02
7130 13683 1.556911 CTACTCCAAGGCTGTGTCCAT 59.443 52.381 0.00 0.00 0.00 3.41
7131 13684 0.773644 ACTCCAAGGCTGTGTCCATT 59.226 50.000 0.00 0.00 0.00 3.16
7132 13685 1.985159 ACTCCAAGGCTGTGTCCATTA 59.015 47.619 0.00 0.00 0.00 1.90
7133 13686 2.026822 ACTCCAAGGCTGTGTCCATTAG 60.027 50.000 0.00 0.00 0.00 1.73
7134 13687 2.237143 CTCCAAGGCTGTGTCCATTAGA 59.763 50.000 0.00 0.00 0.00 2.10
7135 13688 2.642311 TCCAAGGCTGTGTCCATTAGAA 59.358 45.455 0.00 0.00 0.00 2.10
7136 13689 3.266772 TCCAAGGCTGTGTCCATTAGAAT 59.733 43.478 0.00 0.00 0.00 2.40
7137 13690 4.473196 TCCAAGGCTGTGTCCATTAGAATA 59.527 41.667 0.00 0.00 0.00 1.75
7138 13691 4.818546 CCAAGGCTGTGTCCATTAGAATAG 59.181 45.833 0.00 0.00 0.00 1.73
7139 13692 4.696479 AGGCTGTGTCCATTAGAATAGG 57.304 45.455 0.00 0.00 0.00 2.57
7140 13693 4.298626 AGGCTGTGTCCATTAGAATAGGA 58.701 43.478 0.00 0.00 0.00 2.94
7168 13721 1.205417 CATTGATGCCAAGTTGGTCCC 59.795 52.381 22.85 12.14 40.46 4.46
7180 13733 5.496556 CAAGTTGGTCCCAGATATTGTACA 58.503 41.667 0.00 0.00 0.00 2.90
7183 13736 4.771114 TGGTCCCAGATATTGTACAAGG 57.229 45.455 14.65 8.97 0.00 3.61
7184 13737 4.108570 TGGTCCCAGATATTGTACAAGGT 58.891 43.478 14.65 4.85 0.00 3.50
7185 13738 4.538490 TGGTCCCAGATATTGTACAAGGTT 59.462 41.667 14.65 0.00 0.00 3.50
7186 13739 5.123936 GGTCCCAGATATTGTACAAGGTTC 58.876 45.833 14.65 10.17 0.00 3.62
7187 13740 5.338871 GGTCCCAGATATTGTACAAGGTTCA 60.339 44.000 14.65 0.00 0.00 3.18
7188 13741 6.177610 GTCCCAGATATTGTACAAGGTTCAA 58.822 40.000 14.65 0.00 0.00 2.69
7189 13742 6.828785 GTCCCAGATATTGTACAAGGTTCAAT 59.171 38.462 14.65 6.49 37.34 2.57
7190 13743 7.339466 GTCCCAGATATTGTACAAGGTTCAATT 59.661 37.037 14.65 0.00 35.69 2.32
7191 13744 7.556275 TCCCAGATATTGTACAAGGTTCAATTC 59.444 37.037 14.65 2.45 35.69 2.17
7192 13745 7.557719 CCCAGATATTGTACAAGGTTCAATTCT 59.442 37.037 14.65 4.48 35.69 2.40
7238 13792 1.379146 GGGGTTGAGACAAGGGGAC 59.621 63.158 0.00 0.00 0.00 4.46
7242 13796 1.276705 GGTTGAGACAAGGGGACTCTC 59.723 57.143 0.00 0.00 42.68 3.20
7244 13798 3.432378 GTTGAGACAAGGGGACTCTCTA 58.568 50.000 0.00 0.00 42.68 2.43
7248 13802 2.862597 AGACAAGGGGACTCTCTATCCT 59.137 50.000 0.00 0.00 42.68 3.24
7250 13804 2.090999 ACAAGGGGACTCTCTATCCTCC 60.091 54.545 0.00 0.00 42.68 4.30
7292 13846 3.686016 GGAAGGCCTGTCAAGAATGTTA 58.314 45.455 5.69 0.00 0.00 2.41
7323 13878 4.626529 CGAAAGAGGAAGGGGCTTTATCTT 60.627 45.833 0.00 0.00 33.27 2.40
7339 13894 2.957402 TCTTGGGTGAGAGTTTGCAT 57.043 45.000 0.00 0.00 0.00 3.96
7363 15452 3.708403 TGCTCCATGTGTCTCATCTTT 57.292 42.857 0.00 0.00 34.09 2.52
7368 15457 6.660521 TGCTCCATGTGTCTCATCTTTTATTT 59.339 34.615 0.00 0.00 34.09 1.40
7372 15461 5.295431 TGTGTCTCATCTTTTATTTGCCG 57.705 39.130 0.00 0.00 0.00 5.69
7383 15472 3.587797 TTATTTGCCGACGACTCTCTT 57.412 42.857 0.00 0.00 0.00 2.85
7390 15479 3.181503 TGCCGACGACTCTCTTGTATTAC 60.182 47.826 0.00 0.00 0.00 1.89
7391 15480 3.791455 GCCGACGACTCTCTTGTATTACC 60.791 52.174 0.00 0.00 0.00 2.85
7418 15507 8.450578 AAGGAGAATATGACGAATGCAATTTA 57.549 30.769 0.00 0.00 36.07 1.40
7468 15557 0.179111 TTCATCGGGCAGCGAGTAAG 60.179 55.000 0.00 0.00 0.00 2.34
7473 15562 2.300433 TCGGGCAGCGAGTAAGTATAA 58.700 47.619 0.00 0.00 0.00 0.98
7504 15593 9.759473 ATCTAGCATATATTTTAGCCCAAACAT 57.241 29.630 0.00 0.00 0.00 2.71
7508 15597 8.485392 AGCATATATTTTAGCCCAAACATTGTT 58.515 29.630 0.00 0.00 0.00 2.83
7521 15610 6.072728 CCCAAACATTGTTATCGAAGTCAGAA 60.073 38.462 1.76 0.00 0.00 3.02
7542 15631 5.639506 AGAATGGATGTTTGTACTGTTCTCG 59.360 40.000 0.00 0.00 0.00 4.04
7549 15638 8.136165 GGATGTTTGTACTGTTCTCGATATACT 58.864 37.037 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 242 5.794687 TTTGTAGACAAACACAGACACAG 57.205 39.130 3.71 0.00 40.55 3.66
122 243 6.561737 TTTTTGTAGACAAACACAGACACA 57.438 33.333 7.33 0.00 44.56 3.72
123 244 6.020678 GCATTTTTGTAGACAAACACAGACAC 60.021 38.462 7.33 0.00 44.56 3.67
141 262 1.440893 TGCCGCACACAGCATTTTT 59.559 47.368 0.00 0.00 46.13 1.94
194 315 0.179073 ATGCGGCACACTCATAGGAC 60.179 55.000 4.03 0.00 0.00 3.85
197 318 1.328680 GACAATGCGGCACACTCATAG 59.671 52.381 4.03 0.00 0.00 2.23
199 320 1.638388 CGACAATGCGGCACACTCAT 61.638 55.000 4.03 0.00 0.00 2.90
217 338 3.902465 CGACATTTGCTTTCAGACTTTCG 59.098 43.478 0.00 0.00 0.00 3.46
260 381 4.136796 CCTCTGTCATTTTCAACACTCCA 58.863 43.478 0.00 0.00 0.00 3.86
327 453 1.336887 CCCGCAGAATATACCGAGGTG 60.337 57.143 4.80 0.00 0.00 4.00
332 458 3.861276 TGATACCCGCAGAATATACCG 57.139 47.619 0.00 0.00 0.00 4.02
399 569 1.012086 CGCACTCAGATGGTGGATTG 58.988 55.000 0.00 0.00 35.47 2.67
438 608 6.482308 ACCATGTCACTTGTTTACTAACAGAC 59.518 38.462 0.00 0.00 44.56 3.51
441 611 7.633193 AAACCATGTCACTTGTTTACTAACA 57.367 32.000 0.00 0.00 42.34 2.41
445 616 9.744468 GAAATAAAACCATGTCACTTGTTTACT 57.256 29.630 0.00 0.00 31.16 2.24
450 621 9.260002 GATTTGAAATAAAACCATGTCACTTGT 57.740 29.630 0.00 0.00 0.00 3.16
451 622 9.258826 TGATTTGAAATAAAACCATGTCACTTG 57.741 29.630 0.00 0.00 0.00 3.16
492 663 6.896088 CCTCCGTTCGTAAATAAATAACGTTG 59.104 38.462 11.99 0.00 40.84 4.10
493 664 6.035975 CCCTCCGTTCGTAAATAAATAACGTT 59.964 38.462 5.88 5.88 40.84 3.99
498 670 6.469782 ACTCCCTCCGTTCGTAAATAAATA 57.530 37.500 0.00 0.00 0.00 1.40
507 679 1.303888 TGCTACTCCCTCCGTTCGT 60.304 57.895 0.00 0.00 0.00 3.85
552 740 7.163441 GGTTTTTAGTATTCTACCTGGTGTCA 58.837 38.462 10.23 0.00 0.00 3.58
553 741 6.596888 GGGTTTTTAGTATTCTACCTGGTGTC 59.403 42.308 10.23 0.00 0.00 3.67
554 742 6.044637 TGGGTTTTTAGTATTCTACCTGGTGT 59.955 38.462 10.23 0.00 0.00 4.16
555 743 6.373495 GTGGGTTTTTAGTATTCTACCTGGTG 59.627 42.308 10.23 0.00 0.00 4.17
556 744 6.479006 GTGGGTTTTTAGTATTCTACCTGGT 58.521 40.000 4.05 4.05 0.00 4.00
557 745 5.884232 GGTGGGTTTTTAGTATTCTACCTGG 59.116 44.000 0.00 0.00 0.00 4.45
558 746 5.583457 CGGTGGGTTTTTAGTATTCTACCTG 59.417 44.000 0.00 0.00 0.00 4.00
559 747 5.484998 TCGGTGGGTTTTTAGTATTCTACCT 59.515 40.000 0.00 0.00 0.00 3.08
560 748 5.733676 TCGGTGGGTTTTTAGTATTCTACC 58.266 41.667 0.00 0.00 0.00 3.18
561 749 7.550196 TGAATCGGTGGGTTTTTAGTATTCTAC 59.450 37.037 0.00 0.00 0.00 2.59
562 750 7.622713 TGAATCGGTGGGTTTTTAGTATTCTA 58.377 34.615 0.00 0.00 0.00 2.10
583 775 7.306341 GCGGAAAAGTTAAAATCGTTGTTGAAT 60.306 33.333 0.00 0.00 0.00 2.57
593 785 4.957832 TTTGCGCGGAAAAGTTAAAATC 57.042 36.364 23.89 0.00 0.00 2.17
602 798 2.227626 TCAATCAGATTTGCGCGGAAAA 59.772 40.909 29.17 13.66 0.00 2.29
615 811 8.567948 GGTCAAAACTAACAAATCTCAATCAGA 58.432 33.333 0.00 0.00 34.78 3.27
616 812 8.571336 AGGTCAAAACTAACAAATCTCAATCAG 58.429 33.333 0.00 0.00 0.00 2.90
618 814 9.185192 CAAGGTCAAAACTAACAAATCTCAATC 57.815 33.333 0.00 0.00 0.00 2.67
619 815 8.143835 CCAAGGTCAAAACTAACAAATCTCAAT 58.856 33.333 0.00 0.00 0.00 2.57
620 816 7.417342 CCCAAGGTCAAAACTAACAAATCTCAA 60.417 37.037 0.00 0.00 0.00 3.02
621 817 6.040391 CCCAAGGTCAAAACTAACAAATCTCA 59.960 38.462 0.00 0.00 0.00 3.27
622 818 6.264518 TCCCAAGGTCAAAACTAACAAATCTC 59.735 38.462 0.00 0.00 0.00 2.75
623 819 6.040504 GTCCCAAGGTCAAAACTAACAAATCT 59.959 38.462 0.00 0.00 0.00 2.40
631 827 2.158579 GGTGGTCCCAAGGTCAAAACTA 60.159 50.000 0.00 0.00 0.00 2.24
645 841 3.307059 GCATCTATATCTGTGGGTGGTCC 60.307 52.174 0.00 0.00 0.00 4.46
650 846 6.445451 AAATCAGCATCTATATCTGTGGGT 57.555 37.500 0.00 0.00 0.00 4.51
651 847 5.579904 CGAAATCAGCATCTATATCTGTGGG 59.420 44.000 0.00 0.00 0.00 4.61
652 848 6.393171 TCGAAATCAGCATCTATATCTGTGG 58.607 40.000 0.00 0.00 0.00 4.17
653 849 7.598118 AGTTCGAAATCAGCATCTATATCTGTG 59.402 37.037 0.00 0.00 0.00 3.66
654 850 7.665690 AGTTCGAAATCAGCATCTATATCTGT 58.334 34.615 0.00 0.00 0.00 3.41
657 853 7.095481 TGCAAGTTCGAAATCAGCATCTATATC 60.095 37.037 17.87 0.00 0.00 1.63
659 855 6.048509 TGCAAGTTCGAAATCAGCATCTATA 58.951 36.000 17.87 0.00 0.00 1.31
666 862 1.069022 TGCTGCAAGTTCGAAATCAGC 60.069 47.619 24.18 24.18 44.97 4.26
667 863 2.847901 CTGCTGCAAGTTCGAAATCAG 58.152 47.619 3.02 4.60 35.30 2.90
669 865 1.611043 GCTGCTGCAAGTTCGAAATC 58.389 50.000 11.11 0.00 39.41 2.17
697 893 1.062525 CCGGACGCAAGCATAAAGC 59.937 57.895 0.00 0.00 46.19 3.51
698 894 0.373716 GTCCGGACGCAAGCATAAAG 59.626 55.000 20.85 0.00 45.62 1.85
699 895 1.022451 GGTCCGGACGCAAGCATAAA 61.022 55.000 27.68 0.00 45.62 1.40
700 896 1.448893 GGTCCGGACGCAAGCATAA 60.449 57.895 27.68 0.00 45.62 1.90
701 897 2.185867 GGTCCGGACGCAAGCATA 59.814 61.111 27.68 0.00 45.62 3.14
745 941 1.062525 CAAATTCTACCGCCGCTGC 59.937 57.895 0.00 0.00 0.00 5.25
746 942 0.742990 TCCAAATTCTACCGCCGCTG 60.743 55.000 0.00 0.00 0.00 5.18
747 943 0.035820 TTCCAAATTCTACCGCCGCT 60.036 50.000 0.00 0.00 0.00 5.52
748 944 0.098200 GTTCCAAATTCTACCGCCGC 59.902 55.000 0.00 0.00 0.00 6.53
874 1079 4.778143 GAATGCCCTCCCACGCGT 62.778 66.667 5.58 5.58 0.00 6.01
925 1143 3.130633 CGCCGTATTCATTCATTCCTCA 58.869 45.455 0.00 0.00 0.00 3.86
929 1147 3.303791 GGTTCCGCCGTATTCATTCATTC 60.304 47.826 0.00 0.00 0.00 2.67
987 1236 4.214327 CCCTCGCTCGCCTTCCTC 62.214 72.222 0.00 0.00 0.00 3.71
991 1240 4.083862 GTTCCCCTCGCTCGCCTT 62.084 66.667 0.00 0.00 0.00 4.35
1000 1249 4.373116 TCGTGCAGCGTTCCCCTC 62.373 66.667 8.22 0.00 42.13 4.30
1001 1250 4.379243 CTCGTGCAGCGTTCCCCT 62.379 66.667 8.22 0.00 42.13 4.79
1047 1296 4.564110 GAATTCCGGGGGCGAGGG 62.564 72.222 0.00 0.00 0.00 4.30
1048 1297 4.564110 GGAATTCCGGGGGCGAGG 62.564 72.222 9.17 0.00 0.00 4.63
1078 1327 2.696526 AGGAGCCCATTACCTCGATA 57.303 50.000 0.00 0.00 0.00 2.92
1095 1344 2.040359 GGGAGGGAGGGAGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
1096 1345 1.074850 GAGGGAGGGAGGGAGGAAG 60.075 68.421 0.00 0.00 0.00 3.46
1097 1346 2.647949 GGAGGGAGGGAGGGAGGAA 61.648 68.421 0.00 0.00 0.00 3.36
1098 1347 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1099 1348 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1100 1349 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1101 1350 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1102 1351 4.548513 CGAGGGAGGGAGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
1205 1463 3.005367 CCAAACTAACAAACAGGGCGAAT 59.995 43.478 0.00 0.00 0.00 3.34
1206 1464 2.359531 CCAAACTAACAAACAGGGCGAA 59.640 45.455 0.00 0.00 0.00 4.70
1207 1465 1.950909 CCAAACTAACAAACAGGGCGA 59.049 47.619 0.00 0.00 0.00 5.54
1209 1467 2.223947 CCACCAAACTAACAAACAGGGC 60.224 50.000 0.00 0.00 0.00 5.19
1210 1468 2.223947 GCCACCAAACTAACAAACAGGG 60.224 50.000 0.00 0.00 0.00 4.45
1213 1471 2.093106 ACGCCACCAAACTAACAAACA 58.907 42.857 0.00 0.00 0.00 2.83
1214 1472 2.456010 CACGCCACCAAACTAACAAAC 58.544 47.619 0.00 0.00 0.00 2.93
1215 1473 1.405821 CCACGCCACCAAACTAACAAA 59.594 47.619 0.00 0.00 0.00 2.83
1218 1476 1.310904 TTCCACGCCACCAAACTAAC 58.689 50.000 0.00 0.00 0.00 2.34
1221 1479 0.744281 CTTTTCCACGCCACCAAACT 59.256 50.000 0.00 0.00 0.00 2.66
1222 1480 0.249280 CCTTTTCCACGCCACCAAAC 60.249 55.000 0.00 0.00 0.00 2.93
1259 1519 4.232248 GAATAACGGCGGCGGCAC 62.232 66.667 35.05 16.94 42.47 5.01
1273 1536 2.180204 CCGGAGCGAAATGGCGAAT 61.180 57.895 0.00 0.00 38.18 3.34
1274 1537 2.817834 CCGGAGCGAAATGGCGAA 60.818 61.111 0.00 0.00 38.18 4.70
1297 1560 1.641123 CGAATCCCGTTGGAAACCGG 61.641 60.000 0.00 0.00 46.28 5.28
1299 1562 0.607217 ACCGAATCCCGTTGGAAACC 60.607 55.000 0.00 0.00 46.28 3.27
1305 1568 2.104253 CCGGAACCGAATCCCGTTG 61.104 63.158 15.07 0.00 41.53 4.10
1308 1571 3.777910 ACCCGGAACCGAATCCCG 61.778 66.667 15.07 0.00 42.83 5.14
1321 1584 2.742372 CGCCAGAAACTCCACCCG 60.742 66.667 0.00 0.00 0.00 5.28
1322 1585 1.966451 CACGCCAGAAACTCCACCC 60.966 63.158 0.00 0.00 0.00 4.61
1323 1586 1.227853 ACACGCCAGAAACTCCACC 60.228 57.895 0.00 0.00 0.00 4.61
1325 1588 1.891919 GCACACGCCAGAAACTCCA 60.892 57.895 0.00 0.00 0.00 3.86
1326 1589 2.946762 GCACACGCCAGAAACTCC 59.053 61.111 0.00 0.00 0.00 3.85
1327 1590 2.551270 CGCACACGCCAGAAACTC 59.449 61.111 0.00 0.00 33.11 3.01
1332 1626 2.031919 AATTCCGCACACGCCAGA 59.968 55.556 0.00 0.00 38.22 3.86
1341 1635 2.186602 TAGCGAACCCCAATTCCGCA 62.187 55.000 0.00 0.00 33.45 5.69
1360 1655 2.344500 TCGAACGCCGAACCCATT 59.656 55.556 0.00 0.00 45.43 3.16
1455 1750 4.215399 GCATAGTACAGCACTGGACAAAAA 59.785 41.667 15.24 0.00 46.74 1.94
1543 1846 8.035394 TCTCCATCAGTAACAAGTAAAGCTAAG 58.965 37.037 0.00 0.00 0.00 2.18
1570 1873 3.370953 CCACCTATTCCCAACTCTCCAAG 60.371 52.174 0.00 0.00 0.00 3.61
1574 1877 1.134068 GCCCACCTATTCCCAACTCTC 60.134 57.143 0.00 0.00 0.00 3.20
1604 1907 9.979578 ATACAGAAATGAGAAGATGCTAACTAG 57.020 33.333 0.00 0.00 0.00 2.57
1624 1939 2.555448 CGGCCTATCCTCTCCATACAGA 60.555 54.545 0.00 0.00 0.00 3.41
1640 1955 3.474570 GGACATGAGCCTCGGCCT 61.475 66.667 0.00 0.00 43.17 5.19
1642 1957 2.107953 GAGGACATGAGCCTCGGC 59.892 66.667 18.75 0.00 42.22 5.54
1652 1967 5.899547 TCAACACTAGGACATATGAGGACAT 59.100 40.000 10.38 0.00 40.16 3.06
1659 1974 6.481313 CAGACCAATCAACACTAGGACATATG 59.519 42.308 0.00 0.00 0.00 1.78
1660 1975 6.586344 CAGACCAATCAACACTAGGACATAT 58.414 40.000 0.00 0.00 0.00 1.78
1702 2017 1.699634 TCCTGGACTTGGTGGAAAGAG 59.300 52.381 0.00 0.00 0.00 2.85
1704 2019 1.699634 TCTCCTGGACTTGGTGGAAAG 59.300 52.381 0.00 0.00 0.00 2.62
1740 2055 5.086727 GCCTGCGTAATAACAGAAGAAAAC 58.913 41.667 0.00 0.00 35.90 2.43
1745 2060 2.535984 CGAGCCTGCGTAATAACAGAAG 59.464 50.000 0.00 0.00 35.90 2.85
1755 2091 3.877357 CTCGAGCGAGCCTGCGTA 61.877 66.667 6.99 0.00 40.67 4.42
1812 2148 1.732732 CGCTTCCTCTTGTAGGTCACG 60.733 57.143 0.00 0.00 46.62 4.35
1866 2202 1.694696 ACAGGAGGACACTTTGGAGTC 59.305 52.381 0.00 0.00 32.54 3.36
1872 2208 3.391296 TGCTAGAAACAGGAGGACACTTT 59.609 43.478 0.00 0.00 0.00 2.66
1873 2209 2.972713 TGCTAGAAACAGGAGGACACTT 59.027 45.455 0.00 0.00 0.00 3.16
1876 2212 2.300152 CACTGCTAGAAACAGGAGGACA 59.700 50.000 0.00 0.00 38.24 4.02
1877 2213 2.354203 CCACTGCTAGAAACAGGAGGAC 60.354 54.545 0.00 0.00 38.24 3.85
1906 2242 2.852075 TTCCGGGGCTTCTGTGGT 60.852 61.111 0.00 0.00 0.00 4.16
1907 2243 2.045926 CTTCCGGGGCTTCTGTGG 60.046 66.667 0.00 0.00 0.00 4.17
1938 2277 2.100252 TCCGTTCGACTGGTCATTATCC 59.900 50.000 2.28 0.00 0.00 2.59
1944 2283 2.097036 ACATATCCGTTCGACTGGTCA 58.903 47.619 2.28 0.00 0.00 4.02
1949 2288 4.386867 ACATGAACATATCCGTTCGACT 57.613 40.909 0.00 0.00 46.77 4.18
1952 2291 5.286438 TCCTTACATGAACATATCCGTTCG 58.714 41.667 0.00 0.00 46.77 3.95
1954 2293 5.820947 GGTTCCTTACATGAACATATCCGTT 59.179 40.000 0.00 0.00 43.05 4.44
1955 2294 5.130477 AGGTTCCTTACATGAACATATCCGT 59.870 40.000 0.00 0.00 43.05 4.69
1956 2295 5.611374 AGGTTCCTTACATGAACATATCCG 58.389 41.667 0.00 0.00 43.05 4.18
1957 2296 7.054124 TCAAGGTTCCTTACATGAACATATCC 58.946 38.462 0.00 0.00 43.05 2.59
1959 2298 7.554118 CACTCAAGGTTCCTTACATGAACATAT 59.446 37.037 0.00 0.00 43.05 1.78
1960 2299 6.878923 CACTCAAGGTTCCTTACATGAACATA 59.121 38.462 0.00 0.00 43.05 2.29
1962 2301 5.063204 CACTCAAGGTTCCTTACATGAACA 58.937 41.667 0.00 0.00 43.05 3.18
1963 2302 5.063880 ACACTCAAGGTTCCTTACATGAAC 58.936 41.667 0.00 0.00 41.05 3.18
1964 2303 5.304686 ACACTCAAGGTTCCTTACATGAA 57.695 39.130 0.00 0.00 0.00 2.57
1965 2304 4.974645 ACACTCAAGGTTCCTTACATGA 57.025 40.909 0.00 0.00 0.00 3.07
1966 2305 5.308825 AGAACACTCAAGGTTCCTTACATG 58.691 41.667 3.64 5.46 44.40 3.21
1967 2306 5.308237 AGAGAACACTCAAGGTTCCTTACAT 59.692 40.000 3.64 0.00 44.40 2.29
1968 2307 4.654262 AGAGAACACTCAAGGTTCCTTACA 59.346 41.667 3.64 0.00 44.40 2.41
1969 2308 5.011227 AGAGAGAACACTCAAGGTTCCTTAC 59.989 44.000 3.64 0.00 44.40 2.34
1970 2309 5.148502 AGAGAGAACACTCAAGGTTCCTTA 58.851 41.667 3.64 0.00 44.40 2.69
1971 2310 3.970640 AGAGAGAACACTCAAGGTTCCTT 59.029 43.478 0.00 0.00 44.40 3.36
1972 2311 3.576550 GAGAGAGAACACTCAAGGTTCCT 59.423 47.826 0.00 0.00 44.40 3.36
1973 2312 3.576550 AGAGAGAGAACACTCAAGGTTCC 59.423 47.826 0.00 0.00 44.40 3.62
1974 2313 4.864704 AGAGAGAGAACACTCAAGGTTC 57.135 45.455 0.00 0.00 43.82 3.62
1975 2314 5.454045 GGAAAGAGAGAGAACACTCAAGGTT 60.454 44.000 0.00 0.00 39.14 3.50
1976 2315 4.039852 GGAAAGAGAGAGAACACTCAAGGT 59.960 45.833 0.00 0.00 39.14 3.50
1977 2316 4.283212 AGGAAAGAGAGAGAACACTCAAGG 59.717 45.833 0.00 0.00 39.14 3.61
1978 2317 5.221422 ACAGGAAAGAGAGAGAACACTCAAG 60.221 44.000 0.00 0.00 39.14 3.02
1979 2318 4.651503 ACAGGAAAGAGAGAGAACACTCAA 59.348 41.667 0.00 0.00 39.14 3.02
1980 2319 4.219115 ACAGGAAAGAGAGAGAACACTCA 58.781 43.478 0.00 0.00 39.14 3.41
1981 2320 4.864704 ACAGGAAAGAGAGAGAACACTC 57.135 45.455 0.00 0.00 37.19 3.51
1982 2321 4.261825 CGAACAGGAAAGAGAGAGAACACT 60.262 45.833 0.00 0.00 0.00 3.55
1983 2322 3.984633 CGAACAGGAAAGAGAGAGAACAC 59.015 47.826 0.00 0.00 0.00 3.32
1984 2323 3.637229 ACGAACAGGAAAGAGAGAGAACA 59.363 43.478 0.00 0.00 0.00 3.18
1985 2324 4.231439 GACGAACAGGAAAGAGAGAGAAC 58.769 47.826 0.00 0.00 0.00 3.01
1986 2325 3.058155 CGACGAACAGGAAAGAGAGAGAA 60.058 47.826 0.00 0.00 0.00 2.87
1988 2327 2.226912 ACGACGAACAGGAAAGAGAGAG 59.773 50.000 0.00 0.00 0.00 3.20
1989 2328 2.225963 GACGACGAACAGGAAAGAGAGA 59.774 50.000 0.00 0.00 0.00 3.10
1994 2333 4.092771 TCTATGACGACGAACAGGAAAG 57.907 45.455 0.00 0.00 0.00 2.62
1996 2335 3.079578 ACTCTATGACGACGAACAGGAA 58.920 45.455 0.00 0.00 0.00 3.36
2001 2340 7.681125 AATCAATAACTCTATGACGACGAAC 57.319 36.000 0.00 0.00 0.00 3.95
2025 3343 9.453572 ACAGAAGCAATAGAGATAACATCAAAA 57.546 29.630 0.00 0.00 0.00 2.44
2037 3355 4.180057 GTGGACAGACAGAAGCAATAGAG 58.820 47.826 0.00 0.00 0.00 2.43
2041 3359 1.070758 ACGTGGACAGACAGAAGCAAT 59.929 47.619 0.00 0.00 0.00 3.56
2045 3363 3.644884 ACTAACGTGGACAGACAGAAG 57.355 47.619 0.00 0.00 0.00 2.85
2046 3364 3.635373 AGAACTAACGTGGACAGACAGAA 59.365 43.478 0.00 0.00 0.00 3.02
2202 4795 2.046023 CATCAGCTCCACGGCCAA 60.046 61.111 2.24 0.00 0.00 4.52
2207 4800 2.164422 TCTTACAGACATCAGCTCCACG 59.836 50.000 0.00 0.00 0.00 4.94
2234 4827 3.250040 CCAACGCAAAGCAACTACTAAGT 59.750 43.478 0.00 0.00 37.65 2.24
2252 4845 5.911378 ACCTAGTACAAGCTACTACCAAC 57.089 43.478 0.00 0.00 0.00 3.77
2294 4887 4.297768 CCACCCCCTTTGATTTCCATTAT 58.702 43.478 0.00 0.00 0.00 1.28
2443 5040 8.422973 GTCATAAAGCATTGAATTTATGGCAA 57.577 30.769 21.89 10.03 46.15 4.52
2493 5090 6.939132 AGATGCAAAAGAAGGTAGATGATG 57.061 37.500 0.00 0.00 0.00 3.07
2519 5117 9.243105 CAATTTTCCAGAGGAGAAAAGGTATAA 57.757 33.333 5.12 0.00 44.12 0.98
2520 5118 8.611257 TCAATTTTCCAGAGGAGAAAAGGTATA 58.389 33.333 5.12 0.00 44.12 1.47
2521 5119 7.394641 GTCAATTTTCCAGAGGAGAAAAGGTAT 59.605 37.037 5.12 0.00 44.12 2.73
2634 5232 6.925718 GGAATTTCCTTTTGTTCTTTCTCTGG 59.074 38.462 8.25 0.00 32.53 3.86
2689 5287 4.137543 GGTGACAGAACAAATCTCAGGTT 58.862 43.478 0.00 0.00 35.73 3.50
2740 5347 5.728344 GCATCATTGGTGCATTGCAATTTAC 60.728 40.000 16.95 11.38 41.47 2.01
2747 5354 3.444751 TGCATCATTGGTGCATTGC 57.555 47.368 20.39 0.46 46.76 3.56
2783 5390 6.003326 TCTGAGATAGCATAGAGAACTGGAG 58.997 44.000 0.00 0.00 0.00 3.86
2793 5400 5.388408 TCAGCATGTCTGAGATAGCATAG 57.612 43.478 13.62 3.04 46.34 2.23
3043 5656 5.256474 AGGCTGTAGCATTAACTGACAAAT 58.744 37.500 6.18 0.00 44.36 2.32
3136 5749 3.744238 TTGCAGCACAGTACAAGAGTA 57.256 42.857 0.00 0.00 0.00 2.59
3543 6601 1.753649 GCCACTGAGATAGCACTGAGA 59.246 52.381 0.00 0.00 0.00 3.27
3546 6604 0.529337 CGGCCACTGAGATAGCACTG 60.529 60.000 2.24 0.00 0.00 3.66
3554 6612 1.533033 TGAACTCCGGCCACTGAGA 60.533 57.895 18.06 0.00 32.86 3.27
4078 7198 1.066908 CCTTTTCCGTTCAAGCAAGCA 59.933 47.619 0.00 0.00 0.00 3.91
4091 7211 8.035165 ACAAACACAATTTTGTTACCTTTTCC 57.965 30.769 10.26 0.00 45.45 3.13
4182 7304 7.330208 GCATGCATGAACTACAAAAGAAGAATT 59.670 33.333 30.64 0.00 0.00 2.17
4247 7369 7.286775 AGTTAAGGCTTGGTTTACATCTTCAAA 59.713 33.333 10.69 0.00 0.00 2.69
4288 7410 6.603095 GCTAGTAAATTCTGAAACTGGTGTG 58.397 40.000 0.00 0.00 0.00 3.82
4614 7736 4.735369 TGCTTTTGTTTTCCTCCTGGATA 58.265 39.130 0.00 0.00 42.81 2.59
4615 7737 3.575687 CTGCTTTTGTTTTCCTCCTGGAT 59.424 43.478 0.00 0.00 42.81 3.41
4767 7889 5.453567 ACCAATGAAGCACTTCCTAAAAC 57.546 39.130 7.88 0.00 38.77 2.43
4863 7989 4.417426 ACTACATACGATTTGGGAAGGG 57.583 45.455 0.00 0.00 0.00 3.95
4986 8112 7.131907 AGGCAGTATAATACATGTACCAACA 57.868 36.000 7.96 0.00 40.69 3.33
4987 8113 7.214381 TGAGGCAGTATAATACATGTACCAAC 58.786 38.462 7.96 4.70 0.00 3.77
5182 8619 3.443681 ACAGAGCCGGGTCATAAAAATTG 59.556 43.478 33.52 22.07 0.00 2.32
5194 8631 0.745845 CTTTCCATGACAGAGCCGGG 60.746 60.000 2.18 0.00 0.00 5.73
5274 8711 0.322008 CAAACTGGACTCAGGAGCCC 60.322 60.000 0.00 0.00 44.99 5.19
5543 8980 0.324943 TTAGCAAGGTCCTCAGCCAC 59.675 55.000 11.56 0.00 0.00 5.01
5759 9196 4.610333 TGTTGGCCTCTATCTGAAGAGTA 58.390 43.478 3.32 1.74 41.27 2.59
5946 9386 0.400213 TGGTAGTTCTTGGCACCAGG 59.600 55.000 0.00 0.00 36.15 4.45
5984 9424 2.875296 CTGTTGGTTGATGGGAAGGAA 58.125 47.619 0.00 0.00 0.00 3.36
6004 9444 0.813821 GAGGAAGGCTGTTGATTGGC 59.186 55.000 0.00 0.00 0.00 4.52
6187 9630 0.603707 CCAGCTTCAAAGAGGCGTCA 60.604 55.000 9.41 0.00 39.66 4.35
6262 9705 3.244770 GGTTTAGATCCAAGGTGTCACCA 60.245 47.826 24.02 3.34 41.95 4.17
6400 12140 5.751990 AGTTTGTTAACTAGACACAACGGAG 59.248 40.000 7.22 0.00 42.73 4.63
6411 12151 8.548721 ATCGAAGACAACAAGTTTGTTAACTAG 58.451 33.333 9.69 9.58 45.18 2.57
6434 12174 1.197721 GTTCCACCAACTTCAGCATCG 59.802 52.381 0.00 0.00 31.50 3.84
6527 12272 7.871463 AGATAGCTTGTATTACGTCCATTAACC 59.129 37.037 0.00 0.00 0.00 2.85
6528 12273 8.813643 AGATAGCTTGTATTACGTCCATTAAC 57.186 34.615 0.00 0.00 0.00 2.01
6529 12274 9.903682 GTAGATAGCTTGTATTACGTCCATTAA 57.096 33.333 0.00 0.00 0.00 1.40
6531 12276 7.948357 TGTAGATAGCTTGTATTACGTCCATT 58.052 34.615 0.00 0.00 0.00 3.16
6532 12277 7.520451 TGTAGATAGCTTGTATTACGTCCAT 57.480 36.000 0.00 0.00 0.00 3.41
6533 12278 6.947644 TGTAGATAGCTTGTATTACGTCCA 57.052 37.500 0.00 0.00 0.00 4.02
6534 12279 7.028361 GGATGTAGATAGCTTGTATTACGTCC 58.972 42.308 13.95 13.95 38.97 4.79
6535 12280 7.028361 GGGATGTAGATAGCTTGTATTACGTC 58.972 42.308 0.00 0.00 0.00 4.34
6536 12281 6.071503 GGGGATGTAGATAGCTTGTATTACGT 60.072 42.308 0.00 0.00 0.00 3.57
6537 12282 6.071560 TGGGGATGTAGATAGCTTGTATTACG 60.072 42.308 0.00 0.00 0.00 3.18
6568 12332 3.799366 TCCTTTAGCAAAAGACGACACA 58.201 40.909 0.00 0.00 44.14 3.72
6576 12340 4.437930 CGGAGCTCATTCCTTTAGCAAAAG 60.438 45.833 17.19 0.00 41.57 2.27
6598 12362 0.823356 CTAACCCAATGGCCATCCCG 60.823 60.000 21.08 11.42 35.87 5.14
6622 12386 5.465724 ACCAGATCGCCGAATAGATTTAAAC 59.534 40.000 0.00 0.00 0.00 2.01
6624 12388 5.209818 ACCAGATCGCCGAATAGATTTAA 57.790 39.130 0.00 0.00 0.00 1.52
6633 12397 0.391130 CAAAGGACCAGATCGCCGAA 60.391 55.000 0.00 0.00 0.00 4.30
6634 12398 1.218047 CAAAGGACCAGATCGCCGA 59.782 57.895 0.00 0.00 0.00 5.54
6635 12399 0.807667 CTCAAAGGACCAGATCGCCG 60.808 60.000 0.00 0.00 0.00 6.46
6663 12451 2.851805 GGCAAAGCCTAATTTCTCCG 57.148 50.000 0.00 0.00 46.69 4.63
6689 12477 4.498241 ACGTCCATGATCATATCAATCCG 58.502 43.478 8.15 6.69 43.50 4.18
6709 12497 1.950909 GGACAGAGGAGAGGACATACG 59.049 57.143 0.00 0.00 0.00 3.06
6712 12500 0.396417 CCGGACAGAGGAGAGGACAT 60.396 60.000 0.00 0.00 0.00 3.06
6717 12505 1.257743 TTGAACCGGACAGAGGAGAG 58.742 55.000 9.46 0.00 0.00 3.20
6720 12508 6.494666 AATATAATTGAACCGGACAGAGGA 57.505 37.500 9.46 0.00 0.00 3.71
6722 12510 8.438676 AAGAAATATAATTGAACCGGACAGAG 57.561 34.615 9.46 0.00 0.00 3.35
6723 12511 8.801882 AAAGAAATATAATTGAACCGGACAGA 57.198 30.769 9.46 0.00 0.00 3.41
6745 13269 6.076981 ACATCTTTGGTGTGCTCTTAAAAG 57.923 37.500 0.00 0.00 0.00 2.27
6816 13367 4.934001 TGTTTACCCGTATGTTCGCATTTA 59.066 37.500 0.00 0.00 38.94 1.40
6865 13416 0.771127 AGCTTAGGTTTCCTGGCACA 59.229 50.000 14.12 0.00 36.62 4.57
6867 13418 2.290705 GGTTAGCTTAGGTTTCCTGGCA 60.291 50.000 0.00 0.00 36.62 4.92
6922 13473 3.435186 GAGTGAAGGCAAGCGGGC 61.435 66.667 0.00 0.00 43.80 6.13
6934 13485 3.282745 GAGCGAGGTTGCCGAGTGA 62.283 63.158 0.00 0.00 34.65 3.41
6938 13489 2.357034 GTTGAGCGAGGTTGCCGA 60.357 61.111 0.00 0.00 34.65 5.54
6940 13491 1.237285 ATGTGTTGAGCGAGGTTGCC 61.237 55.000 0.00 0.00 34.65 4.52
6952 13503 3.134623 TGGGGCTATCTACTCATGTGTTG 59.865 47.826 5.63 4.38 0.00 3.33
6976 13527 3.871594 GGGTAGATCATCAAAGAACACCG 59.128 47.826 0.00 0.00 0.00 4.94
7019 13571 2.430694 ACTTGGTCCCTTTGAAAGCAAC 59.569 45.455 0.00 0.00 32.79 4.17
7027 13580 2.374184 TGTTGTCACTTGGTCCCTTTG 58.626 47.619 0.00 0.00 0.00 2.77
7029 13582 2.818751 TTGTTGTCACTTGGTCCCTT 57.181 45.000 0.00 0.00 0.00 3.95
7030 13583 2.174639 TCATTGTTGTCACTTGGTCCCT 59.825 45.455 0.00 0.00 0.00 4.20
7031 13584 2.582052 TCATTGTTGTCACTTGGTCCC 58.418 47.619 0.00 0.00 0.00 4.46
7044 13597 5.299279 AGGTTTCGACACTTTGATCATTGTT 59.701 36.000 0.00 0.00 0.00 2.83
7045 13598 4.821805 AGGTTTCGACACTTTGATCATTGT 59.178 37.500 0.00 0.05 0.00 2.71
7053 13606 2.802816 CAGGAGAGGTTTCGACACTTTG 59.197 50.000 1.13 0.00 0.00 2.77
7054 13607 2.807108 GCAGGAGAGGTTTCGACACTTT 60.807 50.000 1.13 0.00 0.00 2.66
7101 13654 1.946283 GCCTTGGAGTAGTGGTTGAGC 60.946 57.143 0.00 0.00 0.00 4.26
7111 13664 1.656587 ATGGACACAGCCTTGGAGTA 58.343 50.000 0.00 0.00 0.00 2.59
7116 13669 4.818546 CCTATTCTAATGGACACAGCCTTG 59.181 45.833 0.00 0.00 0.00 3.61
7117 13670 4.721776 TCCTATTCTAATGGACACAGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
7118 13671 4.101741 GTCCTATTCTAATGGACACAGCCT 59.898 45.833 14.31 0.00 46.79 4.58
7126 13679 4.473196 TGTGCAAGGTCCTATTCTAATGGA 59.527 41.667 0.00 0.00 0.00 3.41
7127 13680 4.780815 TGTGCAAGGTCCTATTCTAATGG 58.219 43.478 0.00 0.00 0.00 3.16
7128 13681 6.543465 TCAATGTGCAAGGTCCTATTCTAATG 59.457 38.462 0.00 0.00 0.00 1.90
7129 13682 6.662755 TCAATGTGCAAGGTCCTATTCTAAT 58.337 36.000 0.00 0.00 0.00 1.73
7130 13683 6.061022 TCAATGTGCAAGGTCCTATTCTAA 57.939 37.500 0.00 0.00 0.00 2.10
7131 13684 5.692115 TCAATGTGCAAGGTCCTATTCTA 57.308 39.130 0.00 0.00 0.00 2.10
7132 13685 4.574674 TCAATGTGCAAGGTCCTATTCT 57.425 40.909 0.00 0.00 0.00 2.40
7133 13686 4.498682 GCATCAATGTGCAAGGTCCTATTC 60.499 45.833 0.00 0.00 44.43 1.75
7134 13687 3.382546 GCATCAATGTGCAAGGTCCTATT 59.617 43.478 0.00 0.00 44.43 1.73
7135 13688 2.954318 GCATCAATGTGCAAGGTCCTAT 59.046 45.455 0.00 0.00 44.43 2.57
7136 13689 2.368439 GCATCAATGTGCAAGGTCCTA 58.632 47.619 0.00 0.00 44.43 2.94
7137 13690 1.180029 GCATCAATGTGCAAGGTCCT 58.820 50.000 0.00 0.00 44.43 3.85
7138 13691 0.174162 GGCATCAATGTGCAAGGTCC 59.826 55.000 9.30 0.00 46.81 4.46
7139 13692 0.889994 TGGCATCAATGTGCAAGGTC 59.110 50.000 9.30 0.00 46.81 3.85
7140 13693 1.274167 CTTGGCATCAATGTGCAAGGT 59.726 47.619 9.30 0.00 46.81 3.50
7145 13698 1.001181 ACCAACTTGGCATCAATGTGC 59.999 47.619 7.81 0.33 42.67 4.57
7238 13792 9.753674 AACAAGAATAGATAGGAGGATAGAGAG 57.246 37.037 0.00 0.00 0.00 3.20
7239 13793 9.527157 CAACAAGAATAGATAGGAGGATAGAGA 57.473 37.037 0.00 0.00 0.00 3.10
7242 13796 7.816995 GCACAACAAGAATAGATAGGAGGATAG 59.183 40.741 0.00 0.00 0.00 2.08
7244 13798 6.529220 GCACAACAAGAATAGATAGGAGGAT 58.471 40.000 0.00 0.00 0.00 3.24
7248 13802 4.119862 GCGCACAACAAGAATAGATAGGA 58.880 43.478 0.30 0.00 0.00 2.94
7250 13804 3.060272 CCGCGCACAACAAGAATAGATAG 60.060 47.826 8.75 0.00 0.00 2.08
7292 13846 3.610911 CCCTTCCTCTTTCGCAAATAGT 58.389 45.455 0.00 0.00 0.00 2.12
7323 13878 3.877559 CATCTATGCAAACTCTCACCCA 58.122 45.455 0.00 0.00 0.00 4.51
7339 13894 4.221530 AGATGAGACACATGGAGCATCTA 58.778 43.478 13.51 0.00 40.25 1.98
7363 15452 3.250744 CAAGAGAGTCGTCGGCAAATAA 58.749 45.455 0.00 0.00 0.00 1.40
7368 15457 1.460504 ATACAAGAGAGTCGTCGGCA 58.539 50.000 0.00 0.00 0.00 5.69
7372 15461 4.871993 TCGGTAATACAAGAGAGTCGTC 57.128 45.455 0.00 0.00 0.00 4.20
7383 15472 6.487668 TCGTCATATTCTCCTTCGGTAATACA 59.512 38.462 0.00 0.00 0.00 2.29
7390 15479 3.430218 GCATTCGTCATATTCTCCTTCGG 59.570 47.826 0.00 0.00 0.00 4.30
7391 15480 4.051237 TGCATTCGTCATATTCTCCTTCG 58.949 43.478 0.00 0.00 0.00 3.79
7504 15593 6.406370 ACATCCATTCTGACTTCGATAACAA 58.594 36.000 0.00 0.00 0.00 2.83
7508 15597 6.406370 ACAAACATCCATTCTGACTTCGATA 58.594 36.000 0.00 0.00 0.00 2.92
7521 15610 5.147330 TCGAGAACAGTACAAACATCCAT 57.853 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.