Multiple sequence alignment - TraesCS6A01G390100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G390100 chr6A 100.000 5515 0 0 1 5515 605234027 605228513 0.000000e+00 10185
1 TraesCS6A01G390100 chr6D 91.659 5515 309 64 25 5443 458360693 458366152 0.000000e+00 7496
2 TraesCS6A01G390100 chr6B 90.995 3798 223 49 1696 5436 696638156 696641891 0.000000e+00 5009
3 TraesCS6A01G390100 chr6B 84.448 1196 58 49 1 1164 696636434 696637533 0.000000e+00 1061
4 TraesCS6A01G390100 chr6B 88.504 548 40 16 1158 1687 696637573 696638115 4.660000e-180 641
5 TraesCS6A01G390100 chr1A 89.320 206 21 1 4879 5084 584890783 584890579 1.970000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G390100 chr6A 605228513 605234027 5514 True 10185 10185 100.000000 1 5515 1 chr6A.!!$R1 5514
1 TraesCS6A01G390100 chr6D 458360693 458366152 5459 False 7496 7496 91.659000 25 5443 1 chr6D.!!$F1 5418
2 TraesCS6A01G390100 chr6B 696636434 696641891 5457 False 2237 5009 87.982333 1 5436 3 chr6B.!!$F1 5435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 533 0.464036 TCCCAATCACGAGATTCCCG 59.536 55.0 5.01 0.0 42.46 5.14 F
2022 2185 0.034670 ATCAGAACCAGAAGGCAGGC 60.035 55.0 0.00 0.0 39.06 4.85 F
2886 3055 0.319900 CTAGTCGGGCATCCAATCGG 60.320 60.0 0.00 0.0 0.00 4.18 F
2994 3163 0.108756 GGGGAGCACGTAGAAGTGTC 60.109 60.0 0.00 0.0 43.61 3.67 F
4253 4450 0.110823 GTTCGCAACGCAAAGATCGT 60.111 50.0 0.00 0.0 42.54 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2464 0.179020 CTGAAGGTGGTGCAACAGGA 60.179 55.0 3.59 0.00 39.98 3.86 R
2994 3163 0.249238 GCATCTCACCTAGAGTGCCG 60.249 60.0 6.51 2.07 46.81 5.69 R
4233 4430 0.110867 CGATCTTTGCGTTGCGAACA 60.111 50.0 0.00 0.00 0.00 3.18 R
4379 4576 0.252284 TCTCCACCACCTCCCTCTTC 60.252 60.0 0.00 0.00 0.00 2.87 R
5467 5703 0.179020 AAGCACAGCCACAGCACTAA 60.179 50.0 0.00 0.00 43.56 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.641577 GTTCGTCCCTTCTCATTCCG 58.358 55.000 0.00 0.00 0.00 4.30
103 113 2.461300 ACCCTCGATCAATCTCTCCA 57.539 50.000 0.00 0.00 0.00 3.86
106 116 2.034878 CCTCGATCAATCTCTCCACCA 58.965 52.381 0.00 0.00 0.00 4.17
107 117 2.632028 CCTCGATCAATCTCTCCACCAT 59.368 50.000 0.00 0.00 0.00 3.55
108 118 3.554544 CCTCGATCAATCTCTCCACCATG 60.555 52.174 0.00 0.00 0.00 3.66
109 119 3.033909 TCGATCAATCTCTCCACCATGT 58.966 45.455 0.00 0.00 0.00 3.21
110 120 4.215109 TCGATCAATCTCTCCACCATGTA 58.785 43.478 0.00 0.00 0.00 2.29
112 122 4.279420 CGATCAATCTCTCCACCATGTAGA 59.721 45.833 0.00 0.00 0.00 2.59
113 123 5.564455 CGATCAATCTCTCCACCATGTAGAG 60.564 48.000 0.00 0.00 38.48 2.43
114 124 4.614475 TCAATCTCTCCACCATGTAGAGT 58.386 43.478 9.91 0.00 38.32 3.24
115 125 5.766590 TCAATCTCTCCACCATGTAGAGTA 58.233 41.667 9.91 0.57 38.32 2.59
116 126 5.594725 TCAATCTCTCCACCATGTAGAGTAC 59.405 44.000 9.91 0.00 38.32 2.73
117 127 3.899726 TCTCTCCACCATGTAGAGTACC 58.100 50.000 9.91 0.00 38.32 3.34
119 129 2.313643 TCTCCACCATGTAGAGTACCCA 59.686 50.000 0.00 0.00 0.00 4.51
219 242 1.852942 CAGCAGCAATCCATGAATGC 58.147 50.000 8.67 8.67 41.21 3.56
221 244 2.621526 CAGCAGCAATCCATGAATGCTA 59.378 45.455 16.14 0.00 45.55 3.49
222 245 3.255888 CAGCAGCAATCCATGAATGCTAT 59.744 43.478 16.14 8.26 45.55 2.97
224 247 3.254903 GCAGCAATCCATGAATGCTATCA 59.745 43.478 16.14 0.00 45.55 2.15
225 248 4.616143 GCAGCAATCCATGAATGCTATCAG 60.616 45.833 16.14 8.12 45.55 2.90
226 249 3.506455 AGCAATCCATGAATGCTATCAGC 59.494 43.478 15.33 0.00 45.48 4.26
257 283 0.832559 CCTCCGTCTTCCCCCTATCC 60.833 65.000 0.00 0.00 0.00 2.59
364 390 1.369625 CACGGGCCAGAGAATAACAC 58.630 55.000 10.86 0.00 0.00 3.32
370 396 2.359900 GCCAGAGAATAACACCACCAG 58.640 52.381 0.00 0.00 0.00 4.00
371 397 2.290323 GCCAGAGAATAACACCACCAGT 60.290 50.000 0.00 0.00 0.00 4.00
495 530 2.939103 CAGGTTCCCAATCACGAGATTC 59.061 50.000 5.01 0.00 42.46 2.52
496 531 2.092914 AGGTTCCCAATCACGAGATTCC 60.093 50.000 5.01 3.92 42.46 3.01
497 532 2.289565 GTTCCCAATCACGAGATTCCC 58.710 52.381 5.01 0.00 42.46 3.97
498 533 0.464036 TCCCAATCACGAGATTCCCG 59.536 55.000 5.01 0.00 42.46 5.14
517 552 2.673687 CCGCCGCCCCTTTTAACA 60.674 61.111 0.00 0.00 0.00 2.41
567 602 9.386122 AGTAGTATATCTGATCCCATCACTTTT 57.614 33.333 0.00 0.00 35.06 2.27
633 669 2.526624 GCTTTGGGTTGGGGGCTT 60.527 61.111 0.00 0.00 0.00 4.35
711 747 3.480133 CGGCCGGGGAAAGAGGAT 61.480 66.667 20.10 0.00 0.00 3.24
712 748 3.007542 GGCCGGGGAAAGAGGATT 58.992 61.111 2.18 0.00 0.00 3.01
713 749 1.152943 GGCCGGGGAAAGAGGATTC 60.153 63.158 2.18 0.00 0.00 2.52
714 750 1.523938 GCCGGGGAAAGAGGATTCG 60.524 63.158 2.18 0.00 0.00 3.34
715 751 1.968050 GCCGGGGAAAGAGGATTCGA 61.968 60.000 2.18 0.00 0.00 3.71
716 752 0.759346 CCGGGGAAAGAGGATTCGAT 59.241 55.000 0.00 0.00 0.00 3.59
726 762 1.154205 AGGATTCGATCTTTGCCGCG 61.154 55.000 0.00 0.00 0.00 6.46
859 895 3.727258 CCGCATTGGGTGGGAGGA 61.727 66.667 0.00 0.00 43.79 3.71
860 896 2.124570 CGCATTGGGTGGGAGGAG 60.125 66.667 0.00 0.00 43.02 3.69
872 908 2.503382 GGAGGAGATCACCGGAGCC 61.503 68.421 9.46 0.00 34.73 4.70
873 909 2.835431 AGGAGATCACCGGAGCCG 60.835 66.667 9.46 1.06 39.44 5.52
892 928 2.561419 CCGGCCGAGATAAGATTTCCTA 59.439 50.000 30.73 0.00 0.00 2.94
954 993 3.797353 ACATTCGCGCCCCCATCT 61.797 61.111 0.00 0.00 0.00 2.90
1029 1069 4.640690 AGTGGCTCCGAGGTGGGT 62.641 66.667 0.00 0.00 38.76 4.51
1063 1103 1.761174 GAGTGACCACCACCACCAT 59.239 57.895 0.00 0.00 46.87 3.55
1065 1105 0.768221 AGTGACCACCACCACCATCT 60.768 55.000 0.00 0.00 46.87 2.90
1067 1107 0.850100 TGACCACCACCACCATCTTT 59.150 50.000 0.00 0.00 0.00 2.52
1070 1110 0.405585 CCACCACCACCATCTTTCCT 59.594 55.000 0.00 0.00 0.00 3.36
1071 1111 1.538047 CACCACCACCATCTTTCCTG 58.462 55.000 0.00 0.00 0.00 3.86
1173 1268 4.819630 ACCTGTACACACACGATTCAAAAT 59.180 37.500 0.00 0.00 0.00 1.82
1175 1270 6.147164 ACCTGTACACACACGATTCAAAATAG 59.853 38.462 0.00 0.00 0.00 1.73
1181 1276 7.921787 ACACACACGATTCAAAATAGTTTGTA 58.078 30.769 14.70 6.49 43.90 2.41
1213 1308 4.315588 GCTGGCTGCTGTTCATCT 57.684 55.556 9.31 0.00 38.95 2.90
1214 1309 2.096596 GCTGGCTGCTGTTCATCTC 58.903 57.895 9.31 0.00 38.95 2.75
1291 1389 1.379576 GGCTCCTGCATTGAAGGCT 60.380 57.895 5.72 0.00 41.91 4.58
1313 1412 1.674817 CGGTTGTTAATGCCGTCCTCT 60.675 52.381 7.02 0.00 40.53 3.69
1496 1598 2.186384 CAGCTCCTCGCCCTTCTG 59.814 66.667 0.00 0.00 40.39 3.02
1499 1613 1.448717 GCTCCTCGCCCTTCTGTTC 60.449 63.158 0.00 0.00 0.00 3.18
1503 1617 1.004560 CTCGCCCTTCTGTTCTGCA 60.005 57.895 0.00 0.00 0.00 4.41
1504 1618 0.392193 CTCGCCCTTCTGTTCTGCAT 60.392 55.000 0.00 0.00 0.00 3.96
1574 1699 2.481276 CGGTCTCTGATGCGATTTACCA 60.481 50.000 0.00 0.00 0.00 3.25
1633 1759 1.666189 GGTAGTTTCAAGATGGCGAGC 59.334 52.381 0.00 0.00 0.00 5.03
1676 1802 9.499479 AGATGGAAGATAAACATGTATGTGATC 57.501 33.333 0.00 5.41 41.61 2.92
1687 1813 5.458015 CATGTATGTGATCATGTCAATGCC 58.542 41.667 0.00 0.00 38.90 4.40
1690 1816 3.639672 TGTGATCATGTCAATGCCTCT 57.360 42.857 0.00 0.00 38.90 3.69
1693 1819 3.693085 GTGATCATGTCAATGCCTCTTGT 59.307 43.478 0.00 0.00 38.90 3.16
1728 1886 9.778741 TTTGTTAACTGATATCTGTTCTCTTGT 57.221 29.630 25.72 8.25 38.62 3.16
1729 1887 8.763049 TGTTAACTGATATCTGTTCTCTTGTG 57.237 34.615 25.72 0.00 38.62 3.33
1755 1918 2.686235 CAGAGAGACAGTCAGCAAAGG 58.314 52.381 2.66 0.00 0.00 3.11
1785 1948 4.447724 TCTCCAACGAAAAGATCAAACTCG 59.552 41.667 0.00 0.18 35.68 4.18
1857 2020 1.920835 GTGGAGAGAAGGGGTGCCT 60.921 63.158 0.00 0.00 0.00 4.75
1860 2023 0.985490 GGAGAGAAGGGGTGCCTGAT 60.985 60.000 0.00 0.00 0.00 2.90
1863 2026 0.842635 GAGAAGGGGTGCCTGATGAT 59.157 55.000 0.00 0.00 0.00 2.45
1887 2050 1.542915 CCTCTCAATGTTGTTGCCAGG 59.457 52.381 0.00 0.00 0.00 4.45
1899 2062 0.251297 TTGCCAGGTTGATGGGTCTG 60.251 55.000 0.00 0.00 40.97 3.51
1912 2075 1.374252 GGTCTGAACGACGCACCAT 60.374 57.895 0.00 0.00 43.79 3.55
1945 2108 4.494091 TCTGATTTGGGATCAGGAAGAC 57.506 45.455 14.14 0.00 44.15 3.01
1965 2128 2.824341 ACGGTTCAGTAAGGAAGACGAT 59.176 45.455 0.00 0.00 34.43 3.73
1997 2160 2.624838 TCAAGCCAAAGAAGGAAAGCAG 59.375 45.455 0.00 0.00 0.00 4.24
2004 2167 2.822707 AGAAGGAAAGCAGATGCCAT 57.177 45.000 0.14 0.00 43.38 4.40
2022 2185 0.034670 ATCAGAACCAGAAGGCAGGC 60.035 55.000 0.00 0.00 39.06 4.85
2025 2188 2.281761 AACCAGAAGGCAGGCACG 60.282 61.111 0.00 0.00 39.06 5.34
2097 2266 3.319122 GCAAGAACAGACACCAAGGAAAT 59.681 43.478 0.00 0.00 0.00 2.17
2206 2375 2.158813 TCAAAGGAGTTCCAAGAAGCGT 60.159 45.455 0.28 0.00 38.89 5.07
2215 2384 1.748493 TCCAAGAAGCGTTGCAGTTTT 59.252 42.857 0.00 0.00 0.00 2.43
2250 2419 5.888982 AAGACTTGTTCCTGAAGTTCCTA 57.111 39.130 0.00 0.00 33.71 2.94
2265 2434 2.769095 GTTCCTAGATGAGCCAACTCCT 59.231 50.000 0.00 0.00 42.74 3.69
2280 2449 5.183904 GCCAACTCCTCTGTTATCAAACAAT 59.816 40.000 0.00 0.00 44.79 2.71
2295 2464 7.587037 ATCAAACAATCATTATGGGTTCGAT 57.413 32.000 0.00 0.00 0.00 3.59
2325 2494 4.261994 GCACCACCTTCAGAAATAAAGCAA 60.262 41.667 0.00 0.00 0.00 3.91
2344 2513 6.515272 AGCAAATAACCATACTGAAACCAG 57.485 37.500 0.00 0.00 37.67 4.00
2508 2677 6.869206 AGAATTGTAGTACTAAAGCCAGGA 57.131 37.500 3.61 0.00 0.00 3.86
2547 2716 4.204792 AGATATGATCCCAGTGTCCTCA 57.795 45.455 0.00 0.00 0.00 3.86
2565 2734 7.550551 GTGTCCTCATTAGAATCATCAACAGAA 59.449 37.037 0.00 0.00 0.00 3.02
2566 2735 7.550551 TGTCCTCATTAGAATCATCAACAGAAC 59.449 37.037 0.00 0.00 0.00 3.01
2577 2746 5.724328 TCATCAACAGAACCAGATAGTGAC 58.276 41.667 0.00 0.00 0.00 3.67
2616 2785 4.937620 GCAGTTGATGAAACAGTATCCTCA 59.062 41.667 0.00 0.00 41.61 3.86
2622 2791 7.244886 TGATGAAACAGTATCCTCAAGAAGA 57.755 36.000 0.00 0.00 0.00 2.87
2689 2858 2.366916 AGCCAGGATGAAGATAGTTCGG 59.633 50.000 0.00 0.00 39.69 4.30
2754 2923 7.070821 TCCTTTAGTAAGTCAGAGGTTGAAACT 59.929 37.037 0.00 0.00 37.61 2.66
2769 2938 5.297029 GGTTGAAACTGCTAAAGAAGTGTCT 59.703 40.000 9.31 0.00 38.53 3.41
2836 3005 0.625849 TTCCTGGGATTTCCTGAGCC 59.374 55.000 0.00 0.00 36.68 4.70
2847 3016 2.279069 CCTGAGCCGGAGTGACAGT 61.279 63.158 5.05 0.00 0.00 3.55
2865 3034 3.517100 ACAGTCCTTACTCTGCATCATGT 59.483 43.478 0.00 0.00 35.37 3.21
2868 3037 4.469227 AGTCCTTACTCTGCATCATGTTCT 59.531 41.667 0.00 0.00 0.00 3.01
2873 3042 4.039151 ACTCTGCATCATGTTCTAGTCG 57.961 45.455 0.00 0.00 0.00 4.18
2886 3055 0.319900 CTAGTCGGGCATCCAATCGG 60.320 60.000 0.00 0.00 0.00 4.18
2961 3130 2.928116 GGTGGTATCGTCAACTGTTAGC 59.072 50.000 0.00 0.00 0.00 3.09
2964 3133 2.416431 GGTATCGTCAACTGTTAGCGGT 60.416 50.000 13.29 10.17 35.32 5.68
2994 3163 0.108756 GGGGAGCACGTAGAAGTGTC 60.109 60.000 0.00 0.00 43.61 3.67
3043 3212 3.359950 CCTGAAGGGAAAAAGGATCAGG 58.640 50.000 5.33 5.33 45.51 3.86
3093 3265 0.965439 GATCGCCTGAGCTGGATACT 59.035 55.000 0.00 0.00 36.60 2.12
3171 3343 1.228894 AGGCAGGGAGTCGAACAGA 60.229 57.895 0.00 0.00 0.00 3.41
3177 3349 0.670854 GGGAGTCGAACAGAGTTGCC 60.671 60.000 0.00 0.00 31.40 4.52
3354 3526 2.442878 TGCCATGGCTATTAGTGATGGT 59.557 45.455 35.53 0.00 42.51 3.55
3363 3535 4.991687 GCTATTAGTGATGGTAGTGAAGGC 59.008 45.833 0.00 0.00 0.00 4.35
3436 3608 2.865119 TGAGGATGCTCTGCAAAGAA 57.135 45.000 15.82 0.00 43.62 2.52
3606 3797 9.752961 TTCTTTGGCCAAGTTAAATTACTAAAC 57.247 29.630 19.48 0.00 33.66 2.01
3670 3861 1.075536 GGTGTCCCAGGATTCTTTGGT 59.924 52.381 0.00 0.00 32.40 3.67
3682 3873 4.934602 GGATTCTTTGGTGAGTCTCAAGAG 59.065 45.833 3.51 0.89 0.00 2.85
3736 3927 3.921677 TGGACCGTTTCTCTGTGATAAC 58.078 45.455 0.00 0.00 0.00 1.89
3795 3986 0.177141 GCATCCCCACGTAAGCTGTA 59.823 55.000 0.00 0.00 45.62 2.74
3843 4035 9.507329 AACTGAAAGAGTATCATTGTGTAATGT 57.493 29.630 0.00 0.00 40.31 2.71
3883 4080 0.541998 ATCGTGTCCAGGTCTCCACA 60.542 55.000 0.00 0.00 0.00 4.17
3920 4117 4.476113 TCAAGATCCTTGTCATGGGAAGAT 59.524 41.667 4.99 0.00 35.08 2.40
3935 4132 2.158696 GGAAGATCCCCCATCAGAAGTG 60.159 54.545 0.00 0.00 33.29 3.16
3986 4183 3.022406 GCTTTTCTCCAAGGCTGATGAT 58.978 45.455 0.00 0.00 34.59 2.45
4078 4275 2.673523 CAGCCCTCTGGACCCAAG 59.326 66.667 0.00 0.00 36.68 3.61
4097 4294 3.281727 AGGTTGCTTGAGAAGTTGTCA 57.718 42.857 0.00 0.00 0.00 3.58
4111 4308 2.369860 AGTTGTCAGATCACCAAGCAGA 59.630 45.455 0.00 0.00 0.00 4.26
4132 4329 3.173965 AGGAGATCAAGTCGAGGGAAAA 58.826 45.455 0.00 0.00 0.00 2.29
4139 4336 1.005394 GTCGAGGGAAAAGCGGTCA 60.005 57.895 0.00 0.00 0.00 4.02
4169 4366 2.421424 GCTTCTCTTTGATGCCGTCAAT 59.579 45.455 0.00 0.00 45.77 2.57
4181 4378 2.456119 CGTCAATGAGGCGCTCACC 61.456 63.158 7.64 0.00 43.63 4.02
4211 4408 1.853319 GACAACAGAACTGTCCGCG 59.147 57.895 7.93 0.00 44.13 6.46
4231 4428 4.141876 CCCATGGGGCCGGACATT 62.142 66.667 24.53 0.00 35.35 2.71
4233 4430 1.685421 CCATGGGGCCGGACATTTT 60.685 57.895 11.00 0.00 0.00 1.82
4252 4449 0.110867 TGTTCGCAACGCAAAGATCG 60.111 50.000 0.00 0.00 0.00 3.69
4253 4450 0.110823 GTTCGCAACGCAAAGATCGT 60.111 50.000 0.00 0.00 42.54 3.73
4301 4498 0.530288 CCGATGAAATTTGGCGGGTT 59.470 50.000 12.65 0.00 38.40 4.11
4561 4766 0.250727 TTTTGCCTCTCCCCAACTCG 60.251 55.000 0.00 0.00 0.00 4.18
4607 4813 3.199880 ACTTGCTCTGCTGTAACACTT 57.800 42.857 0.00 0.00 0.00 3.16
4659 4865 1.950828 TGCCAAATGTGTGCCTTTTG 58.049 45.000 0.00 0.00 37.73 2.44
4662 4868 2.547642 GCCAAATGTGTGCCTTTTGCTA 60.548 45.455 0.00 0.00 42.00 3.49
4667 4873 5.927954 AATGTGTGCCTTTTGCTAATTTG 57.072 34.783 0.00 0.00 42.00 2.32
4668 4874 4.399004 TGTGTGCCTTTTGCTAATTTGT 57.601 36.364 0.00 0.00 42.00 2.83
4675 4881 4.672801 GCCTTTTGCTAATTTGTCCTCTCG 60.673 45.833 0.00 0.00 36.87 4.04
4750 4957 6.738114 ACAAATAAACCATGTCAGTGTTGAG 58.262 36.000 0.00 0.00 32.98 3.02
4752 4959 3.297134 AAACCATGTCAGTGTTGAGGT 57.703 42.857 0.00 0.00 32.44 3.85
4754 4961 4.431416 AACCATGTCAGTGTTGAGGTTA 57.569 40.909 9.82 0.00 37.52 2.85
4755 4962 3.740115 ACCATGTCAGTGTTGAGGTTAC 58.260 45.455 0.00 0.00 32.98 2.50
4756 4963 3.074412 CCATGTCAGTGTTGAGGTTACC 58.926 50.000 0.00 0.00 32.98 2.85
4757 4964 2.519377 TGTCAGTGTTGAGGTTACCG 57.481 50.000 0.00 0.00 32.98 4.02
4758 4965 1.145803 GTCAGTGTTGAGGTTACCGC 58.854 55.000 0.00 0.00 32.98 5.68
4765 4979 2.158726 TGTTGAGGTTACCGCCTTTTCT 60.159 45.455 2.08 0.00 39.34 2.52
4767 4981 2.774687 TGAGGTTACCGCCTTTTCTTC 58.225 47.619 2.08 0.00 39.34 2.87
4769 4983 1.703513 AGGTTACCGCCTTTTCTTCCT 59.296 47.619 0.00 0.00 34.71 3.36
4771 4985 3.328637 AGGTTACCGCCTTTTCTTCCTTA 59.671 43.478 0.00 0.00 34.71 2.69
4772 4986 4.018688 AGGTTACCGCCTTTTCTTCCTTAT 60.019 41.667 0.00 0.00 34.71 1.73
4776 4990 7.716560 GGTTACCGCCTTTTCTTCCTTATATAA 59.283 37.037 0.00 0.00 0.00 0.98
4777 4991 9.112725 GTTACCGCCTTTTCTTCCTTATATAAA 57.887 33.333 0.00 0.00 0.00 1.40
4781 4995 8.630037 CCGCCTTTTCTTCCTTATATAAAACAT 58.370 33.333 0.00 0.00 0.00 2.71
4883 5098 6.206634 TGATGAAGGCGAACTAGAAAACAAAT 59.793 34.615 0.00 0.00 0.00 2.32
4885 5100 6.894828 TGAAGGCGAACTAGAAAACAAATAC 58.105 36.000 0.00 0.00 0.00 1.89
4909 5125 7.903145 ACAGTACAAAGGACAGTAACATATCA 58.097 34.615 0.00 0.00 0.00 2.15
4988 5206 1.001181 GCATCAAAAGAAGCAGCCCAA 59.999 47.619 0.00 0.00 0.00 4.12
4990 5208 0.667993 TCAAAAGAAGCAGCCCAACG 59.332 50.000 0.00 0.00 0.00 4.10
5022 5240 7.326789 CACAAGGCACTGTAATCTTATTTTGTG 59.673 37.037 0.00 0.00 40.86 3.33
5038 5256 2.787473 TGTGAGGATCCATGTCAACC 57.213 50.000 15.82 0.00 0.00 3.77
5053 5271 4.000325 TGTCAACCGTGATTTGTCTATGG 59.000 43.478 0.00 0.00 35.80 2.74
5056 5274 5.815740 GTCAACCGTGATTTGTCTATGGTAT 59.184 40.000 0.00 0.00 35.80 2.73
5057 5275 5.815222 TCAACCGTGATTTGTCTATGGTATG 59.185 40.000 0.00 0.00 33.51 2.39
5060 5278 5.116180 CCGTGATTTGTCTATGGTATGTGT 58.884 41.667 0.00 0.00 0.00 3.72
5082 5300 5.215160 GTTCAGAGCACCATTTGTTTACTG 58.785 41.667 0.00 0.00 0.00 2.74
5099 5318 1.098050 CTGCAACCAGTCCTATTGGC 58.902 55.000 0.00 0.00 39.39 4.52
5100 5319 0.698238 TGCAACCAGTCCTATTGGCT 59.302 50.000 0.00 0.00 39.39 4.75
5101 5320 1.912731 TGCAACCAGTCCTATTGGCTA 59.087 47.619 0.00 0.00 39.39 3.93
5112 5331 3.023832 CCTATTGGCTAAAACCCCACTG 58.976 50.000 0.00 0.00 0.00 3.66
5129 5348 1.069049 ACTGGAGCAAAACAATGTGCC 59.931 47.619 0.00 0.00 41.88 5.01
5194 5416 5.700183 TGGCATGTTATTAGGGCTAATGAA 58.300 37.500 0.00 0.00 36.52 2.57
5207 5429 2.415512 GCTAATGAACCCGACAGACAAC 59.584 50.000 0.00 0.00 0.00 3.32
5252 5483 1.151450 ATATTTGGGGGCTCGCAGG 59.849 57.895 2.61 0.00 37.15 4.85
5259 5490 0.819666 GGGGGCTCGCAGGAAATAAG 60.820 60.000 0.00 0.00 0.00 1.73
5260 5491 0.819666 GGGGCTCGCAGGAAATAAGG 60.820 60.000 0.00 0.00 0.00 2.69
5328 5562 3.640029 AGATTATCAAAGCTGCCAATGGG 59.360 43.478 0.00 0.00 27.92 4.00
5330 5564 2.530460 ATCAAAGCTGCCAATGGGTA 57.470 45.000 0.00 0.00 36.17 3.69
5439 5675 8.685257 TTATACAATCTGACCCATATCCTCAT 57.315 34.615 0.00 0.00 0.00 2.90
5440 5676 9.782900 TTATACAATCTGACCCATATCCTCATA 57.217 33.333 0.00 0.00 0.00 2.15
5441 5677 8.866823 ATACAATCTGACCCATATCCTCATAT 57.133 34.615 0.00 0.00 0.00 1.78
5442 5678 7.192852 ACAATCTGACCCATATCCTCATATC 57.807 40.000 0.00 0.00 0.00 1.63
5444 5680 5.558856 TCTGACCCATATCCTCATATCCT 57.441 43.478 0.00 0.00 0.00 3.24
5445 5681 5.275630 TCTGACCCATATCCTCATATCCTG 58.724 45.833 0.00 0.00 0.00 3.86
5446 5682 5.016675 TCTGACCCATATCCTCATATCCTGA 59.983 44.000 0.00 0.00 0.00 3.86
5447 5683 5.858281 TGACCCATATCCTCATATCCTGAT 58.142 41.667 0.00 0.00 32.10 2.90
5448 5684 5.664457 TGACCCATATCCTCATATCCTGATG 59.336 44.000 0.00 0.00 32.10 3.07
5449 5685 5.607767 ACCCATATCCTCATATCCTGATGT 58.392 41.667 0.00 0.00 32.10 3.06
5450 5686 5.427806 ACCCATATCCTCATATCCTGATGTG 59.572 44.000 0.00 0.00 32.10 3.21
5451 5687 5.427806 CCCATATCCTCATATCCTGATGTGT 59.572 44.000 4.17 0.00 32.10 3.72
5452 5688 6.069789 CCCATATCCTCATATCCTGATGTGTT 60.070 42.308 4.17 0.00 32.10 3.32
5453 5689 6.822170 CCATATCCTCATATCCTGATGTGTTG 59.178 42.308 4.17 0.28 32.10 3.33
5454 5690 5.901413 ATCCTCATATCCTGATGTGTTGT 57.099 39.130 4.17 0.00 32.10 3.32
5455 5691 5.698741 TCCTCATATCCTGATGTGTTGTT 57.301 39.130 4.17 0.00 32.10 2.83
5456 5692 5.430886 TCCTCATATCCTGATGTGTTGTTG 58.569 41.667 4.17 0.00 32.10 3.33
5457 5693 5.045651 TCCTCATATCCTGATGTGTTGTTGT 60.046 40.000 4.17 0.00 32.10 3.32
5458 5694 5.065602 CCTCATATCCTGATGTGTTGTTGTG 59.934 44.000 4.17 0.00 32.10 3.33
5459 5695 5.559770 TCATATCCTGATGTGTTGTTGTGT 58.440 37.500 4.17 0.00 32.61 3.72
5460 5696 5.412286 TCATATCCTGATGTGTTGTTGTGTG 59.588 40.000 4.17 0.00 32.61 3.82
5461 5697 3.274095 TCCTGATGTGTTGTTGTGTGA 57.726 42.857 0.00 0.00 0.00 3.58
5462 5698 3.819368 TCCTGATGTGTTGTTGTGTGAT 58.181 40.909 0.00 0.00 0.00 3.06
5463 5699 4.967036 TCCTGATGTGTTGTTGTGTGATA 58.033 39.130 0.00 0.00 0.00 2.15
5464 5700 4.996758 TCCTGATGTGTTGTTGTGTGATAG 59.003 41.667 0.00 0.00 0.00 2.08
5465 5701 4.154737 CCTGATGTGTTGTTGTGTGATAGG 59.845 45.833 0.00 0.00 0.00 2.57
5466 5702 4.071423 TGATGTGTTGTTGTGTGATAGGG 58.929 43.478 0.00 0.00 0.00 3.53
5467 5703 3.569194 TGTGTTGTTGTGTGATAGGGT 57.431 42.857 0.00 0.00 0.00 4.34
5468 5704 3.892284 TGTGTTGTTGTGTGATAGGGTT 58.108 40.909 0.00 0.00 0.00 4.11
5469 5705 5.037383 TGTGTTGTTGTGTGATAGGGTTA 57.963 39.130 0.00 0.00 0.00 2.85
5470 5706 5.060506 TGTGTTGTTGTGTGATAGGGTTAG 58.939 41.667 0.00 0.00 0.00 2.34
5471 5707 5.061179 GTGTTGTTGTGTGATAGGGTTAGT 58.939 41.667 0.00 0.00 0.00 2.24
5472 5708 5.049680 GTGTTGTTGTGTGATAGGGTTAGTG 60.050 44.000 0.00 0.00 0.00 2.74
5473 5709 3.670625 TGTTGTGTGATAGGGTTAGTGC 58.329 45.455 0.00 0.00 0.00 4.40
5474 5710 3.326588 TGTTGTGTGATAGGGTTAGTGCT 59.673 43.478 0.00 0.00 0.00 4.40
5475 5711 3.610040 TGTGTGATAGGGTTAGTGCTG 57.390 47.619 0.00 0.00 0.00 4.41
5476 5712 2.903784 TGTGTGATAGGGTTAGTGCTGT 59.096 45.455 0.00 0.00 0.00 4.40
5477 5713 3.262420 GTGTGATAGGGTTAGTGCTGTG 58.738 50.000 0.00 0.00 0.00 3.66
5478 5714 2.236146 TGTGATAGGGTTAGTGCTGTGG 59.764 50.000 0.00 0.00 0.00 4.17
5479 5715 1.209504 TGATAGGGTTAGTGCTGTGGC 59.790 52.381 0.00 0.00 39.26 5.01
5480 5716 1.486726 GATAGGGTTAGTGCTGTGGCT 59.513 52.381 0.00 0.00 39.59 4.75
5481 5717 0.613260 TAGGGTTAGTGCTGTGGCTG 59.387 55.000 0.00 0.00 39.59 4.85
5482 5718 1.073199 GGGTTAGTGCTGTGGCTGT 59.927 57.895 0.00 0.00 39.59 4.40
5483 5719 1.237285 GGGTTAGTGCTGTGGCTGTG 61.237 60.000 0.00 0.00 39.59 3.66
5484 5720 1.576421 GTTAGTGCTGTGGCTGTGC 59.424 57.895 0.00 0.00 39.59 4.57
5485 5721 0.886490 GTTAGTGCTGTGGCTGTGCT 60.886 55.000 0.00 0.00 39.59 4.40
5486 5722 0.179020 TTAGTGCTGTGGCTGTGCTT 60.179 50.000 0.00 0.00 39.59 3.91
5487 5723 0.886043 TAGTGCTGTGGCTGTGCTTG 60.886 55.000 0.00 0.00 39.59 4.01
5488 5724 2.908428 TGCTGTGGCTGTGCTTGG 60.908 61.111 0.00 0.00 39.59 3.61
5489 5725 2.908940 GCTGTGGCTGTGCTTGGT 60.909 61.111 0.00 0.00 35.22 3.67
5490 5726 2.912624 GCTGTGGCTGTGCTTGGTC 61.913 63.158 0.00 0.00 35.22 4.02
5491 5727 1.526686 CTGTGGCTGTGCTTGGTCA 60.527 57.895 0.00 0.00 0.00 4.02
5492 5728 1.789078 CTGTGGCTGTGCTTGGTCAC 61.789 60.000 0.00 0.00 38.39 3.67
5493 5729 1.526917 GTGGCTGTGCTTGGTCACT 60.527 57.895 0.00 0.00 37.81 3.41
5494 5730 1.227943 TGGCTGTGCTTGGTCACTC 60.228 57.895 0.00 0.00 37.81 3.51
5495 5731 1.227943 GGCTGTGCTTGGTCACTCA 60.228 57.895 0.00 0.00 37.81 3.41
5496 5732 0.607489 GGCTGTGCTTGGTCACTCAT 60.607 55.000 0.00 0.00 37.81 2.90
5497 5733 1.242076 GCTGTGCTTGGTCACTCATT 58.758 50.000 0.00 0.00 37.81 2.57
5498 5734 1.198637 GCTGTGCTTGGTCACTCATTC 59.801 52.381 0.00 0.00 37.81 2.67
5499 5735 2.497138 CTGTGCTTGGTCACTCATTCA 58.503 47.619 0.00 0.00 37.81 2.57
5500 5736 3.079578 CTGTGCTTGGTCACTCATTCAT 58.920 45.455 0.00 0.00 37.81 2.57
5501 5737 2.815503 TGTGCTTGGTCACTCATTCATG 59.184 45.455 0.00 0.00 37.81 3.07
5502 5738 1.814394 TGCTTGGTCACTCATTCATGC 59.186 47.619 0.00 0.00 0.00 4.06
5503 5739 1.202110 GCTTGGTCACTCATTCATGCG 60.202 52.381 0.00 0.00 0.00 4.73
5504 5740 2.079158 CTTGGTCACTCATTCATGCGT 58.921 47.619 0.00 0.00 0.00 5.24
5505 5741 1.441738 TGGTCACTCATTCATGCGTG 58.558 50.000 0.00 0.00 43.01 5.34
5506 5742 0.729116 GGTCACTCATTCATGCGTGG 59.271 55.000 5.98 0.00 42.19 4.94
5507 5743 1.675714 GGTCACTCATTCATGCGTGGA 60.676 52.381 5.98 0.00 42.19 4.02
5508 5744 1.394917 GTCACTCATTCATGCGTGGAC 59.605 52.381 5.98 0.00 42.19 4.02
5509 5745 1.276138 TCACTCATTCATGCGTGGACT 59.724 47.619 5.98 0.00 42.19 3.85
5510 5746 2.495669 TCACTCATTCATGCGTGGACTA 59.504 45.455 5.98 0.00 42.19 2.59
5511 5747 3.132824 TCACTCATTCATGCGTGGACTAT 59.867 43.478 5.98 0.00 42.19 2.12
5512 5748 4.340950 TCACTCATTCATGCGTGGACTATA 59.659 41.667 5.98 0.00 42.19 1.31
5513 5749 4.683320 CACTCATTCATGCGTGGACTATAG 59.317 45.833 5.98 0.00 39.23 1.31
5514 5750 4.584743 ACTCATTCATGCGTGGACTATAGA 59.415 41.667 6.78 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.607370 AAGAGGAAAGCGACGGGGC 62.607 63.158 0.00 0.00 0.00 5.80
82 92 3.254657 GTGGAGAGATTGATCGAGGGTAG 59.745 52.174 0.00 0.00 0.00 3.18
83 93 3.223435 GTGGAGAGATTGATCGAGGGTA 58.777 50.000 0.00 0.00 0.00 3.69
84 94 2.035632 GTGGAGAGATTGATCGAGGGT 58.964 52.381 0.00 0.00 0.00 4.34
85 95 1.342819 GGTGGAGAGATTGATCGAGGG 59.657 57.143 0.00 0.00 0.00 4.30
86 96 2.034878 TGGTGGAGAGATTGATCGAGG 58.965 52.381 0.00 0.00 0.00 4.63
87 97 3.069300 ACATGGTGGAGAGATTGATCGAG 59.931 47.826 0.00 0.00 0.00 4.04
103 113 3.207777 AGGAGATGGGTACTCTACATGGT 59.792 47.826 0.00 0.00 35.10 3.55
106 116 4.902448 GGAAAGGAGATGGGTACTCTACAT 59.098 45.833 0.00 0.00 35.10 2.29
107 117 4.287552 GGAAAGGAGATGGGTACTCTACA 58.712 47.826 0.00 0.00 35.10 2.74
108 118 3.318557 CGGAAAGGAGATGGGTACTCTAC 59.681 52.174 0.00 0.00 35.10 2.59
109 119 3.053095 ACGGAAAGGAGATGGGTACTCTA 60.053 47.826 0.00 0.00 35.10 2.43
110 120 2.292323 ACGGAAAGGAGATGGGTACTCT 60.292 50.000 0.00 0.00 35.10 3.24
112 122 2.249309 ACGGAAAGGAGATGGGTACT 57.751 50.000 0.00 0.00 0.00 2.73
113 123 4.476628 TTTACGGAAAGGAGATGGGTAC 57.523 45.455 0.00 0.00 0.00 3.34
114 124 4.102054 GGATTTACGGAAAGGAGATGGGTA 59.898 45.833 0.00 0.00 0.00 3.69
115 125 3.118000 GGATTTACGGAAAGGAGATGGGT 60.118 47.826 0.00 0.00 0.00 4.51
116 126 3.118038 TGGATTTACGGAAAGGAGATGGG 60.118 47.826 0.00 0.00 0.00 4.00
117 127 4.150897 TGGATTTACGGAAAGGAGATGG 57.849 45.455 0.00 0.00 0.00 3.51
119 129 4.412199 TGGATGGATTTACGGAAAGGAGAT 59.588 41.667 0.00 0.00 0.00 2.75
219 242 4.217118 GGAGGTTATGGCAATTGCTGATAG 59.783 45.833 28.42 0.00 41.70 2.08
220 243 4.144297 GGAGGTTATGGCAATTGCTGATA 58.856 43.478 28.42 20.64 41.70 2.15
221 244 2.961062 GGAGGTTATGGCAATTGCTGAT 59.039 45.455 28.42 21.57 41.70 2.90
222 245 2.378038 GGAGGTTATGGCAATTGCTGA 58.622 47.619 28.42 16.53 41.70 4.26
224 247 1.340991 ACGGAGGTTATGGCAATTGCT 60.341 47.619 28.42 13.56 41.70 3.91
225 248 1.065551 GACGGAGGTTATGGCAATTGC 59.934 52.381 22.47 22.47 41.14 3.56
226 249 2.643551 AGACGGAGGTTATGGCAATTG 58.356 47.619 0.00 0.00 0.00 2.32
364 390 7.832187 TCCTCTGGTTTTATTATTAACTGGTGG 59.168 37.037 0.00 0.00 0.00 4.61
370 396 9.682465 ACTTCCTCCTCTGGTTTTATTATTAAC 57.318 33.333 0.00 0.00 0.00 2.01
371 397 9.681062 CACTTCCTCCTCTGGTTTTATTATTAA 57.319 33.333 0.00 0.00 0.00 1.40
447 482 0.836400 AGGAACGGCCAAGGAGAAGA 60.836 55.000 2.24 0.00 40.02 2.87
517 552 9.700831 ACTAGGCTAAAAATAGTGGATTGATTT 57.299 29.630 0.00 0.00 0.00 2.17
567 602 4.216687 ACGGCGGTGAAAGATGAATAAAAA 59.783 37.500 13.24 0.00 0.00 1.94
572 607 2.277084 GTACGGCGGTGAAAGATGAAT 58.723 47.619 13.24 0.00 0.00 2.57
573 608 1.673626 GGTACGGCGGTGAAAGATGAA 60.674 52.381 13.24 0.00 0.00 2.57
624 660 1.155155 GGGAAAGTCAAGCCCCCAA 59.845 57.895 0.00 0.00 37.04 4.12
633 669 0.464036 CGGATCGATGGGGAAAGTCA 59.536 55.000 0.54 0.00 0.00 3.41
698 734 1.689273 AGATCGAATCCTCTTTCCCCG 59.311 52.381 0.00 0.00 0.00 5.73
699 735 3.847671 AAGATCGAATCCTCTTTCCCC 57.152 47.619 0.00 0.00 0.00 4.81
702 738 3.001736 CGGCAAAGATCGAATCCTCTTTC 59.998 47.826 8.43 5.07 39.15 2.62
703 739 2.939103 CGGCAAAGATCGAATCCTCTTT 59.061 45.455 6.02 6.02 41.24 2.52
704 740 2.555199 CGGCAAAGATCGAATCCTCTT 58.445 47.619 0.00 0.00 33.19 2.85
705 741 1.808133 GCGGCAAAGATCGAATCCTCT 60.808 52.381 0.00 0.00 0.00 3.69
706 742 0.583917 GCGGCAAAGATCGAATCCTC 59.416 55.000 0.00 0.00 0.00 3.71
707 743 1.154205 CGCGGCAAAGATCGAATCCT 61.154 55.000 0.00 0.00 0.00 3.24
708 744 1.276844 CGCGGCAAAGATCGAATCC 59.723 57.895 0.00 0.00 0.00 3.01
709 745 1.368137 GCGCGGCAAAGATCGAATC 60.368 57.895 8.83 0.00 0.00 2.52
710 746 2.106074 TGCGCGGCAAAGATCGAAT 61.106 52.632 8.83 0.00 34.76 3.34
711 747 2.740440 TGCGCGGCAAAGATCGAA 60.740 55.556 8.83 0.00 34.76 3.71
712 748 3.487202 GTGCGCGGCAAAGATCGA 61.487 61.111 8.83 0.00 41.47 3.59
713 749 4.851114 CGTGCGCGGCAAAGATCG 62.851 66.667 12.87 2.27 41.47 3.69
735 771 4.278956 GCGAAAGGGAGAGCGAAA 57.721 55.556 0.00 0.00 0.00 3.46
872 908 2.821991 AGGAAATCTTATCTCGGCCG 57.178 50.000 22.12 22.12 0.00 6.13
873 909 4.525100 AGAGTAGGAAATCTTATCTCGGCC 59.475 45.833 0.00 0.00 0.00 6.13
914 950 1.081840 GCACAGCGGCTTTTGTCTC 60.082 57.895 0.00 0.00 0.00 3.36
915 951 3.034030 GCACAGCGGCTTTTGTCT 58.966 55.556 0.00 0.00 0.00 3.41
954 993 4.382320 CGCGGAAAAGGGGACGGA 62.382 66.667 0.00 0.00 0.00 4.69
1044 1084 1.779061 ATGGTGGTGGTGGTCACTCC 61.779 60.000 0.93 5.30 45.38 3.85
1063 1103 1.585006 GACGACGAGGCAGGAAAGA 59.415 57.895 0.00 0.00 0.00 2.52
1065 1105 2.257371 CGACGACGAGGCAGGAAA 59.743 61.111 0.00 0.00 42.66 3.13
1128 1176 3.155167 GGGGGTAGGGAGAGCACG 61.155 72.222 0.00 0.00 0.00 5.34
1173 1268 9.092876 CAGCTTTGGTTTTGAAATTACAAACTA 57.907 29.630 0.00 0.26 39.08 2.24
1175 1270 7.186128 CCAGCTTTGGTTTTGAAATTACAAAC 58.814 34.615 0.00 0.00 39.08 2.93
1181 1276 3.878699 CAGCCAGCTTTGGTTTTGAAATT 59.121 39.130 0.00 0.00 0.00 1.82
1213 1308 2.165167 CAAAATCTGAAGCAGGGCAGA 58.835 47.619 0.00 0.00 44.43 4.26
1214 1309 2.165167 TCAAAATCTGAAGCAGGGCAG 58.835 47.619 0.00 0.00 31.51 4.85
1253 1349 1.195448 CGGTAGGTATAGGTACGCACG 59.805 57.143 0.00 0.00 0.00 5.34
1313 1412 0.322816 GAGCCCCTTTCATCTGCACA 60.323 55.000 0.00 0.00 0.00 4.57
1503 1617 4.304939 GAAGCAGAAAAGCAGCAAGAAAT 58.695 39.130 0.00 0.00 36.85 2.17
1504 1618 3.491447 GGAAGCAGAAAAGCAGCAAGAAA 60.491 43.478 0.00 0.00 36.85 2.52
1541 1664 3.066233 GAGACCGGCCGAGGAGAAC 62.066 68.421 30.73 9.57 34.73 3.01
1550 1673 2.650813 AATCGCATCAGAGACCGGCC 62.651 60.000 0.00 0.00 0.00 6.13
1555 1680 4.025396 CACATGGTAAATCGCATCAGAGAC 60.025 45.833 0.00 0.00 0.00 3.36
1574 1699 1.251251 GGAGAAACTGCAAGGCACAT 58.749 50.000 0.00 0.00 39.30 3.21
1633 1759 2.099141 TCTGAGCCGGAAACTGATTG 57.901 50.000 5.05 0.00 0.00 2.67
1676 1802 4.216902 TCAAGAACAAGAGGCATTGACATG 59.783 41.667 9.15 0.00 34.20 3.21
1680 1806 2.816087 GCTCAAGAACAAGAGGCATTGA 59.184 45.455 9.15 0.00 34.20 2.57
1687 1813 6.909357 CAGTTAACAAAGCTCAAGAACAAGAG 59.091 38.462 8.61 0.00 35.01 2.85
1690 1816 6.751514 TCAGTTAACAAAGCTCAAGAACAA 57.248 33.333 8.61 0.00 0.00 2.83
1693 1819 8.939929 CAGATATCAGTTAACAAAGCTCAAGAA 58.060 33.333 8.61 0.00 0.00 2.52
1727 1885 2.554462 TGACTGTCTCTCTGCAGTACAC 59.446 50.000 14.67 7.20 44.89 2.90
1728 1886 2.816672 CTGACTGTCTCTCTGCAGTACA 59.183 50.000 14.67 12.64 44.89 2.90
1729 1887 2.415357 GCTGACTGTCTCTCTGCAGTAC 60.415 54.545 14.67 8.73 44.89 2.73
1785 1948 1.380302 ACCAGATCTGTTGGTGGGC 59.620 57.895 21.11 0.00 46.85 5.36
1803 1966 0.602638 GCATCTTGACGGGTGACACA 60.603 55.000 8.08 0.00 0.00 3.72
1857 2020 4.196971 CAACATTGAGAGGCTCATCATCA 58.803 43.478 18.26 8.71 40.39 3.07
1860 2023 3.708403 ACAACATTGAGAGGCTCATCA 57.292 42.857 18.26 14.05 40.39 3.07
1863 2026 1.881973 GCAACAACATTGAGAGGCTCA 59.118 47.619 18.26 0.00 38.87 4.26
1887 2050 1.068474 CGTCGTTCAGACCCATCAAC 58.932 55.000 0.00 0.00 46.92 3.18
1899 2062 2.431942 ACGGATGGTGCGTCGTTC 60.432 61.111 0.00 0.00 41.66 3.95
1908 2071 0.253044 CAGATTGGTGGACGGATGGT 59.747 55.000 0.00 0.00 0.00 3.55
1912 2075 2.617788 CCAAATCAGATTGGTGGACGGA 60.618 50.000 7.83 0.00 43.99 4.69
1934 2097 4.425520 CTTACTGAACCGTCTTCCTGATC 58.574 47.826 0.00 0.00 0.00 2.92
1945 2108 3.179830 CATCGTCTTCCTTACTGAACCG 58.820 50.000 0.00 0.00 0.00 4.44
1965 2128 0.825425 TTGGCTTGACATTTCGGCCA 60.825 50.000 12.41 12.41 45.58 5.36
1997 2160 2.295885 CCTTCTGGTTCTGATGGCATC 58.704 52.381 20.52 20.52 0.00 3.91
2004 2167 1.376466 GCCTGCCTTCTGGTTCTGA 59.624 57.895 0.00 0.00 34.18 3.27
2022 2185 2.887568 GTCTCCTCATGCCGCGTG 60.888 66.667 4.92 6.21 0.00 5.34
2025 2188 1.890979 CCATGTCTCCTCATGCCGC 60.891 63.158 0.00 0.00 42.44 6.53
2097 2266 4.053009 TCTCCTCTCACAAGAAGGATCA 57.947 45.455 0.00 0.00 32.13 2.92
2215 2384 6.772716 AGGAACAAGTCTTTATTTGAGCTCAA 59.227 34.615 25.16 25.16 0.00 3.02
2265 2434 8.821686 ACCCATAATGATTGTTTGATAACAGA 57.178 30.769 0.00 0.00 44.56 3.41
2280 2449 4.450976 CAACAGGATCGAACCCATAATGA 58.549 43.478 8.30 0.00 0.00 2.57
2295 2464 0.179020 CTGAAGGTGGTGCAACAGGA 60.179 55.000 3.59 0.00 39.98 3.86
2325 2494 5.815581 TCTGCTGGTTTCAGTATGGTTATT 58.184 37.500 0.00 0.00 42.78 1.40
2340 2509 2.902486 TCTCTTCACTGATTCTGCTGGT 59.098 45.455 0.00 0.00 0.00 4.00
2344 2513 3.688673 CCCTTTCTCTTCACTGATTCTGC 59.311 47.826 0.00 0.00 0.00 4.26
2493 2662 3.517612 TGGAAGTCCTGGCTTTAGTACT 58.482 45.455 0.00 0.00 36.82 2.73
2508 2677 7.855375 TCATATCTTCATGAGACTTTGGAAGT 58.145 34.615 0.00 0.00 37.17 3.01
2531 2700 3.994317 TCTAATGAGGACACTGGGATCA 58.006 45.455 0.00 0.00 0.00 2.92
2547 2716 9.775854 CTATCTGGTTCTGTTGATGATTCTAAT 57.224 33.333 0.00 0.00 0.00 1.73
2565 2734 3.560481 CACTATCGTCGTCACTATCTGGT 59.440 47.826 0.00 0.00 0.00 4.00
2566 2735 3.560481 ACACTATCGTCGTCACTATCTGG 59.440 47.826 0.00 0.00 0.00 3.86
2577 2746 1.202302 ACTGCCATCACACTATCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
2616 2785 1.734655 TCTCCTTGGCCAGTCTTCTT 58.265 50.000 5.11 0.00 0.00 2.52
2622 2791 1.004044 CAAGTGATCTCCTTGGCCAGT 59.996 52.381 5.11 0.00 36.50 4.00
2716 2885 9.216117 TGACTTACTAAAGGAGCTATTTTCAAC 57.784 33.333 2.02 0.00 37.01 3.18
2717 2886 9.436957 CTGACTTACTAAAGGAGCTATTTTCAA 57.563 33.333 2.02 0.00 37.01 2.69
2754 2923 4.415881 TTCACCAGACACTTCTTTAGCA 57.584 40.909 0.00 0.00 0.00 3.49
2769 2938 4.782691 TCCAGATCCTCACTTATTTCACCA 59.217 41.667 0.00 0.00 0.00 4.17
2808 2977 1.281925 AATCCCAGGAACGGCCAGAT 61.282 55.000 2.24 0.00 40.02 2.90
2836 3005 2.162608 CAGAGTAAGGACTGTCACTCCG 59.837 54.545 17.97 8.63 38.53 4.63
2847 3016 5.658634 ACTAGAACATGATGCAGAGTAAGGA 59.341 40.000 0.00 0.00 0.00 3.36
2865 3034 1.068588 CGATTGGATGCCCGACTAGAA 59.931 52.381 0.00 0.00 34.29 2.10
2868 3037 1.745890 CCGATTGGATGCCCGACTA 59.254 57.895 0.00 0.00 37.49 2.59
2873 3042 3.585990 CACGCCGATTGGATGCCC 61.586 66.667 1.98 0.00 37.49 5.36
2961 3130 0.250513 CTCCCCTTTCTTCCTCACCG 59.749 60.000 0.00 0.00 0.00 4.94
2964 3133 0.693049 GTGCTCCCCTTTCTTCCTCA 59.307 55.000 0.00 0.00 0.00 3.86
2994 3163 0.249238 GCATCTCACCTAGAGTGCCG 60.249 60.000 6.51 2.07 46.81 5.69
3041 3210 0.722676 TATTCCCCCACACTCCTCCT 59.277 55.000 0.00 0.00 0.00 3.69
3042 3211 1.212195 GTTATTCCCCCACACTCCTCC 59.788 57.143 0.00 0.00 0.00 4.30
3043 3212 1.913419 TGTTATTCCCCCACACTCCTC 59.087 52.381 0.00 0.00 0.00 3.71
3093 3265 3.192001 GCAAACATGAGAAAGGATCTGCA 59.808 43.478 0.00 0.00 38.96 4.41
3171 3343 0.535102 CCTGAGAACCAACGGCAACT 60.535 55.000 0.00 0.00 0.00 3.16
3177 3349 1.151668 CAGCTTCCTGAGAACCAACG 58.848 55.000 0.00 0.00 41.77 4.10
3337 3509 6.239714 CCTTCACTACCATCACTAATAGCCAT 60.240 42.308 0.00 0.00 0.00 4.40
3363 3535 5.344743 TCTCCAGTGTAAAATGGCTAGAG 57.655 43.478 0.00 0.00 36.47 2.43
3436 3608 4.019860 AGTGTGACAAGAACTAGCCATGAT 60.020 41.667 0.00 0.00 0.00 2.45
3576 3767 8.793592 AGTAATTTAACTTGGCCAAAGAAGTAG 58.206 33.333 20.91 8.32 39.38 2.57
3606 3797 3.077359 CCCTAACAGGACAGAGCAAAAG 58.923 50.000 0.00 0.00 37.67 2.27
3618 3809 3.790089 AAGGAGAAACACCCTAACAGG 57.210 47.619 0.00 0.00 34.30 4.00
3670 3861 2.808202 GCTTGGTTGCTCTTGAGACTCA 60.808 50.000 0.00 0.00 0.00 3.41
3682 3873 2.564721 GGACACAGGGCTTGGTTGC 61.565 63.158 0.44 0.00 0.00 4.17
3736 3927 5.361285 AGTTGAGTACAGTAGCCTCCTATTG 59.639 44.000 0.00 0.00 37.32 1.90
3843 4035 3.421919 TTCTGCAGACACAATGGATGA 57.578 42.857 18.03 0.00 0.00 2.92
3847 4039 2.485426 ACGATTTCTGCAGACACAATGG 59.515 45.455 18.03 16.65 0.00 3.16
3929 4126 6.966534 AAAGAATTTGGTGACATCACTTCT 57.033 33.333 11.63 9.52 45.73 2.85
4076 4273 3.620488 TGACAACTTCTCAAGCAACCTT 58.380 40.909 0.00 0.00 0.00 3.50
4078 4275 3.206150 TCTGACAACTTCTCAAGCAACC 58.794 45.455 0.00 0.00 0.00 3.77
4097 4294 2.244486 TCTCCTCTGCTTGGTGATCT 57.756 50.000 0.00 0.00 0.00 2.75
4111 4308 2.534042 TTCCCTCGACTTGATCTCCT 57.466 50.000 0.00 0.00 0.00 3.69
4132 4329 0.398318 AAGCCTCTCTTTTGACCGCT 59.602 50.000 0.00 0.00 0.00 5.52
4181 4378 3.026630 TCTGTTGTCCAAGTAAGCTCG 57.973 47.619 0.00 0.00 0.00 5.03
4197 4394 1.288127 GGTACGCGGACAGTTCTGT 59.712 57.895 25.30 5.08 0.00 3.41
4211 4408 4.185286 GTCCGGCCCCATGGGTAC 62.185 72.222 29.33 20.16 46.51 3.34
4223 4420 1.404477 GTTGCGAACAAAATGTCCGG 58.596 50.000 0.00 0.00 37.58 5.14
4231 4428 2.380660 GATCTTTGCGTTGCGAACAAA 58.619 42.857 3.94 3.94 37.58 2.83
4233 4430 0.110867 CGATCTTTGCGTTGCGAACA 60.111 50.000 0.00 0.00 0.00 3.18
4252 4449 5.923204 AGTTACAGGAGGAATCATCATCAC 58.077 41.667 0.00 0.00 38.11 3.06
4253 4450 5.070981 GGAGTTACAGGAGGAATCATCATCA 59.929 44.000 0.00 0.00 38.11 3.07
4379 4576 0.252284 TCTCCACCACCTCCCTCTTC 60.252 60.000 0.00 0.00 0.00 2.87
4418 4621 0.992802 CTTCAAACGTCTCTAGCCGC 59.007 55.000 0.00 0.00 0.00 6.53
4424 4627 1.772182 CGCAGACTTCAAACGTCTCT 58.228 50.000 0.00 0.00 39.59 3.10
4436 4639 2.629656 GCAAACCATGGCGCAGACT 61.630 57.895 13.04 0.00 34.59 3.24
4561 4766 1.191647 CACGCGAACAGAAACACTACC 59.808 52.381 15.93 0.00 0.00 3.18
4607 4813 5.297527 TCTGCGGTAACACGATAAATAGAGA 59.702 40.000 0.00 0.00 35.47 3.10
4659 4865 5.408604 TCAGAAAACGAGAGGACAAATTAGC 59.591 40.000 0.00 0.00 0.00 3.09
4662 4868 9.319143 CTATATCAGAAAACGAGAGGACAAATT 57.681 33.333 0.00 0.00 0.00 1.82
4667 4873 5.279056 CCCCTATATCAGAAAACGAGAGGAC 60.279 48.000 0.00 0.00 0.00 3.85
4668 4874 4.833380 CCCCTATATCAGAAAACGAGAGGA 59.167 45.833 0.00 0.00 0.00 3.71
4675 4881 5.471456 CAGCATCACCCCTATATCAGAAAAC 59.529 44.000 0.00 0.00 0.00 2.43
4750 4957 2.195741 AGGAAGAAAAGGCGGTAACC 57.804 50.000 0.00 0.00 0.00 2.85
4752 4959 9.683870 TTTTATATAAGGAAGAAAAGGCGGTAA 57.316 29.630 0.00 0.00 0.00 2.85
4754 4961 7.612633 TGTTTTATATAAGGAAGAAAAGGCGGT 59.387 33.333 0.00 0.00 0.00 5.68
4755 4962 7.992008 TGTTTTATATAAGGAAGAAAAGGCGG 58.008 34.615 0.00 0.00 0.00 6.13
4777 4991 9.869757 GGACAAAATTAATTACTGCCTTATGTT 57.130 29.630 0.01 0.00 0.00 2.71
4781 4995 8.113462 AGGAGGACAAAATTAATTACTGCCTTA 58.887 33.333 17.52 0.00 0.00 2.69
4785 4999 7.158099 ACAGGAGGACAAAATTAATTACTGC 57.842 36.000 0.01 1.54 0.00 4.40
4855 5070 4.736126 TTCTAGTTCGCCTTCATCATCA 57.264 40.909 0.00 0.00 0.00 3.07
4860 5075 6.575162 ATTTGTTTTCTAGTTCGCCTTCAT 57.425 33.333 0.00 0.00 0.00 2.57
4861 5076 6.483974 TGTATTTGTTTTCTAGTTCGCCTTCA 59.516 34.615 0.00 0.00 0.00 3.02
4883 5098 9.027202 TGATATGTTACTGTCCTTTGTACTGTA 57.973 33.333 0.00 0.00 32.23 2.74
4885 5100 8.035394 AGTGATATGTTACTGTCCTTTGTACTG 58.965 37.037 0.00 0.00 0.00 2.74
4894 5110 8.730680 ACAAAATCAAGTGATATGTTACTGTCC 58.269 33.333 6.77 0.00 33.60 4.02
4909 5125 5.243730 CCTATTGGACCACACAAAATCAAGT 59.756 40.000 0.00 0.00 34.57 3.16
4988 5206 2.974698 GTGCCTTGTGAGCTGCGT 60.975 61.111 0.00 0.00 0.00 5.24
4990 5208 0.603707 TACAGTGCCTTGTGAGCTGC 60.604 55.000 0.00 0.00 32.56 5.25
5022 5240 1.207089 TCACGGTTGACATGGATCCTC 59.793 52.381 14.23 2.63 0.00 3.71
5038 5256 6.312672 TGAACACATACCATAGACAAATCACG 59.687 38.462 0.00 0.00 0.00 4.35
5053 5271 4.216257 ACAAATGGTGCTCTGAACACATAC 59.784 41.667 12.72 0.00 39.87 2.39
5056 5274 2.653726 ACAAATGGTGCTCTGAACACA 58.346 42.857 12.72 0.69 39.87 3.72
5057 5275 3.715628 AACAAATGGTGCTCTGAACAC 57.284 42.857 2.62 2.62 37.31 3.32
5060 5278 4.261572 GCAGTAAACAAATGGTGCTCTGAA 60.262 41.667 0.00 0.00 0.00 3.02
5082 5300 2.710096 TAGCCAATAGGACTGGTTGC 57.290 50.000 0.00 0.00 36.24 4.17
5090 5309 2.923629 AGTGGGGTTTTAGCCAATAGGA 59.076 45.455 0.00 0.00 37.54 2.94
5096 5315 0.404040 CTCCAGTGGGGTTTTAGCCA 59.596 55.000 9.92 0.00 37.54 4.75
5097 5316 0.965866 GCTCCAGTGGGGTTTTAGCC 60.966 60.000 11.68 0.00 38.11 3.93
5099 5318 2.286365 TTGCTCCAGTGGGGTTTTAG 57.714 50.000 11.68 0.00 38.11 1.85
5100 5319 2.696187 GTTTTGCTCCAGTGGGGTTTTA 59.304 45.455 11.68 0.00 38.11 1.52
5101 5320 1.484653 GTTTTGCTCCAGTGGGGTTTT 59.515 47.619 11.68 0.00 38.11 2.43
5112 5331 1.069049 ACTGGCACATTGTTTTGCTCC 59.931 47.619 0.00 0.00 38.20 4.70
5129 5348 3.681897 CCTTGCTGCTAAGACAGTTACTG 59.318 47.826 11.21 11.21 39.96 2.74
5168 5390 5.845391 TTAGCCCTAATAACATGCCAAAC 57.155 39.130 0.00 0.00 0.00 2.93
5178 5400 4.409574 TGTCGGGTTCATTAGCCCTAATAA 59.590 41.667 0.00 0.00 42.67 1.40
5179 5401 3.968649 TGTCGGGTTCATTAGCCCTAATA 59.031 43.478 0.00 0.00 42.67 0.98
5180 5402 2.775384 TGTCGGGTTCATTAGCCCTAAT 59.225 45.455 0.00 0.00 42.67 1.73
5194 5416 4.309950 GGCGGTTGTCTGTCGGGT 62.310 66.667 0.00 0.00 0.00 5.28
5222 5453 0.442310 CCAAATATGCCGATACCGCG 59.558 55.000 0.00 0.00 0.00 6.46
5226 5457 1.173913 GCCCCCAAATATGCCGATAC 58.826 55.000 0.00 0.00 0.00 2.24
5252 5483 5.371526 TCTCATCTCATGTGGCCTTATTTC 58.628 41.667 3.32 0.00 0.00 2.17
5259 5490 1.126488 TCCTCTCATCTCATGTGGCC 58.874 55.000 0.00 0.00 0.00 5.36
5260 5491 2.996249 TTCCTCTCATCTCATGTGGC 57.004 50.000 0.00 0.00 0.00 5.01
5309 5543 2.818921 ACCCATTGGCAGCTTTGATAA 58.181 42.857 0.00 0.00 33.59 1.75
5318 5552 6.772716 AGTCAAAATATACTACCCATTGGCAG 59.227 38.462 0.00 0.00 33.59 4.85
5328 5562 8.604890 GTTCCAGCTTCAGTCAAAATATACTAC 58.395 37.037 0.00 0.00 0.00 2.73
5330 5564 6.599638 GGTTCCAGCTTCAGTCAAAATATACT 59.400 38.462 0.00 0.00 0.00 2.12
5335 5569 3.319122 GTGGTTCCAGCTTCAGTCAAAAT 59.681 43.478 0.00 0.00 0.00 1.82
5340 5574 0.951040 CCGTGGTTCCAGCTTCAGTC 60.951 60.000 0.00 0.00 0.00 3.51
5439 5675 4.967036 TCACACAACAACACATCAGGATA 58.033 39.130 0.00 0.00 0.00 2.59
5440 5676 3.819368 TCACACAACAACACATCAGGAT 58.181 40.909 0.00 0.00 0.00 3.24
5441 5677 3.274095 TCACACAACAACACATCAGGA 57.726 42.857 0.00 0.00 0.00 3.86
5442 5678 4.154737 CCTATCACACAACAACACATCAGG 59.845 45.833 0.00 0.00 0.00 3.86
5444 5680 4.071423 CCCTATCACACAACAACACATCA 58.929 43.478 0.00 0.00 0.00 3.07
5445 5681 4.072131 ACCCTATCACACAACAACACATC 58.928 43.478 0.00 0.00 0.00 3.06
5446 5682 4.098914 ACCCTATCACACAACAACACAT 57.901 40.909 0.00 0.00 0.00 3.21
5447 5683 3.569194 ACCCTATCACACAACAACACA 57.431 42.857 0.00 0.00 0.00 3.72
5448 5684 5.049680 CACTAACCCTATCACACAACAACAC 60.050 44.000 0.00 0.00 0.00 3.32
5449 5685 5.060506 CACTAACCCTATCACACAACAACA 58.939 41.667 0.00 0.00 0.00 3.33
5450 5686 4.083484 GCACTAACCCTATCACACAACAAC 60.083 45.833 0.00 0.00 0.00 3.32
5451 5687 4.069304 GCACTAACCCTATCACACAACAA 58.931 43.478 0.00 0.00 0.00 2.83
5452 5688 3.326588 AGCACTAACCCTATCACACAACA 59.673 43.478 0.00 0.00 0.00 3.33
5453 5689 3.684788 CAGCACTAACCCTATCACACAAC 59.315 47.826 0.00 0.00 0.00 3.32
5454 5690 3.326588 ACAGCACTAACCCTATCACACAA 59.673 43.478 0.00 0.00 0.00 3.33
5455 5691 2.903784 ACAGCACTAACCCTATCACACA 59.096 45.455 0.00 0.00 0.00 3.72
5456 5692 3.262420 CACAGCACTAACCCTATCACAC 58.738 50.000 0.00 0.00 0.00 3.82
5457 5693 2.236146 CCACAGCACTAACCCTATCACA 59.764 50.000 0.00 0.00 0.00 3.58
5458 5694 2.906354 CCACAGCACTAACCCTATCAC 58.094 52.381 0.00 0.00 0.00 3.06
5459 5695 1.209504 GCCACAGCACTAACCCTATCA 59.790 52.381 0.00 0.00 39.53 2.15
5460 5696 1.486726 AGCCACAGCACTAACCCTATC 59.513 52.381 0.00 0.00 43.56 2.08
5461 5697 1.210478 CAGCCACAGCACTAACCCTAT 59.790 52.381 0.00 0.00 43.56 2.57
5462 5698 0.613260 CAGCCACAGCACTAACCCTA 59.387 55.000 0.00 0.00 43.56 3.53
5463 5699 1.376466 CAGCCACAGCACTAACCCT 59.624 57.895 0.00 0.00 43.56 4.34
5464 5700 1.073199 ACAGCCACAGCACTAACCC 59.927 57.895 0.00 0.00 43.56 4.11
5465 5701 1.856265 GCACAGCCACAGCACTAACC 61.856 60.000 0.00 0.00 43.56 2.85
5466 5702 0.886490 AGCACAGCCACAGCACTAAC 60.886 55.000 0.00 0.00 43.56 2.34
5467 5703 0.179020 AAGCACAGCCACAGCACTAA 60.179 50.000 0.00 0.00 43.56 2.24
5468 5704 0.886043 CAAGCACAGCCACAGCACTA 60.886 55.000 0.00 0.00 43.56 2.74
5469 5705 2.191513 CAAGCACAGCCACAGCACT 61.192 57.895 0.00 0.00 43.56 4.40
5470 5706 2.333938 CAAGCACAGCCACAGCAC 59.666 61.111 0.00 0.00 43.56 4.40
5471 5707 2.908428 CCAAGCACAGCCACAGCA 60.908 61.111 0.00 0.00 43.56 4.41
5472 5708 2.908940 ACCAAGCACAGCCACAGC 60.909 61.111 0.00 0.00 40.32 4.40
5473 5709 1.526686 TGACCAAGCACAGCCACAG 60.527 57.895 0.00 0.00 0.00 3.66
5474 5710 1.823470 GTGACCAAGCACAGCCACA 60.823 57.895 0.00 0.00 38.63 4.17
5475 5711 1.510480 GAGTGACCAAGCACAGCCAC 61.510 60.000 0.00 0.00 41.19 5.01
5476 5712 1.227943 GAGTGACCAAGCACAGCCA 60.228 57.895 0.00 0.00 41.19 4.75
5477 5713 0.607489 ATGAGTGACCAAGCACAGCC 60.607 55.000 0.00 0.00 41.19 4.85
5478 5714 1.198637 GAATGAGTGACCAAGCACAGC 59.801 52.381 0.00 0.00 41.19 4.40
5479 5715 2.497138 TGAATGAGTGACCAAGCACAG 58.503 47.619 0.00 0.00 41.19 3.66
5480 5716 2.636647 TGAATGAGTGACCAAGCACA 57.363 45.000 0.00 0.00 41.19 4.57
5481 5717 2.415090 GCATGAATGAGTGACCAAGCAC 60.415 50.000 0.00 0.00 39.05 4.40
5482 5718 1.814394 GCATGAATGAGTGACCAAGCA 59.186 47.619 0.00 0.00 0.00 3.91
5483 5719 1.202110 CGCATGAATGAGTGACCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
5484 5720 2.079158 ACGCATGAATGAGTGACCAAG 58.921 47.619 0.00 0.00 39.36 3.61
5485 5721 2.183478 ACGCATGAATGAGTGACCAA 57.817 45.000 0.00 0.00 39.36 3.67
5486 5722 3.933879 ACGCATGAATGAGTGACCA 57.066 47.368 0.00 0.00 39.36 4.02
5491 5727 3.827008 ATAGTCCACGCATGAATGAGT 57.173 42.857 0.00 0.00 41.54 3.41
5492 5728 5.126396 TCTATAGTCCACGCATGAATGAG 57.874 43.478 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.