Multiple sequence alignment - TraesCS6A01G389800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G389800 chr6A 100.000 2813 0 0 1 2813 605053478 605050666 0.000000e+00 5195
1 TraesCS6A01G389800 chr6A 92.913 254 16 2 2560 2813 8805028 8804777 4.430000e-98 368
2 TraesCS6A01G389800 chr6A 92.913 254 16 2 2560 2813 46071399 46071148 4.430000e-98 368
3 TraesCS6A01G389800 chr6A 89.593 221 19 4 2200 2419 46088454 46088237 7.670000e-71 278
4 TraesCS6A01G389800 chr6B 88.017 2078 192 29 152 2198 697462019 697464070 0.000000e+00 2405
5 TraesCS6A01G389800 chr6B 90.267 1685 140 13 520 2198 697534857 697536523 0.000000e+00 2182
6 TraesCS6A01G389800 chr6B 85.593 1062 120 16 983 2041 697437214 697438245 0.000000e+00 1083
7 TraesCS6A01G389800 chr6B 85.646 627 80 8 1417 2041 697438439 697439057 0.000000e+00 651
8 TraesCS6A01G389800 chr6B 85.336 566 65 6 983 1548 697520021 697520568 1.130000e-158 569
9 TraesCS6A01G389800 chr6B 89.205 352 26 8 29 375 697532764 697533108 2.000000e-116 429
10 TraesCS6A01G389800 chr6B 89.238 223 17 5 437 658 697533475 697533691 3.570000e-69 272
11 TraesCS6A01G389800 chr6B 79.747 316 43 15 2285 2594 644400882 644401182 2.840000e-50 209
12 TraesCS6A01G389800 chr6B 86.740 181 22 2 2283 2462 714172245 714172066 1.710000e-47 200
13 TraesCS6A01G389800 chr6B 90.370 135 9 2 25 155 697461262 697461396 1.040000e-39 174
14 TraesCS6A01G389800 chr6B 95.098 102 5 0 2196 2297 643493581 643493682 8.060000e-36 161
15 TraesCS6A01G389800 chr4A 90.769 325 25 4 2256 2576 599595809 599596132 2.000000e-116 429
16 TraesCS6A01G389800 chr4A 93.307 254 15 1 2560 2813 605593851 605593600 9.510000e-100 374
17 TraesCS6A01G389800 chr4A 87.387 333 19 3 2285 2594 52588971 52589303 7.410000e-96 361
18 TraesCS6A01G389800 chr4A 86.740 181 22 2 2283 2462 632660681 632660860 1.710000e-47 200
19 TraesCS6A01G389800 chr4A 94.286 105 6 0 2194 2298 52588909 52589013 8.060000e-36 161
20 TraesCS6A01G389800 chr3A 84.272 426 36 6 2199 2594 628892946 628893370 1.220000e-103 387
21 TraesCS6A01G389800 chr3A 93.701 254 14 2 2560 2813 706219197 706218946 2.050000e-101 379
22 TraesCS6A01G389800 chr3A 92.520 254 17 2 2560 2813 170344787 170345038 2.060000e-96 363
23 TraesCS6A01G389800 chr3A 84.211 285 23 2 2332 2594 36187089 36186805 1.000000e-64 257
24 TraesCS6A01G389800 chr2A 89.308 318 13 2 2285 2581 737825851 737825534 2.050000e-101 379
25 TraesCS6A01G389800 chr2A 80.797 276 39 9 2329 2594 750322724 750322453 1.320000e-48 204
26 TraesCS6A01G389800 chr5A 93.676 253 14 2 2561 2813 440280120 440280370 7.360000e-101 377
27 TraesCS6A01G389800 chr5A 87.774 319 17 3 2285 2581 566206428 566206110 1.240000e-93 353
28 TraesCS6A01G389800 chrUn 88.218 331 15 4 2285 2594 184650042 184650369 9.510000e-100 374
29 TraesCS6A01G389800 chrUn 92.520 254 17 2 2560 2813 266381908 266382159 2.060000e-96 363
30 TraesCS6A01G389800 chr1A 92.913 254 16 1 2560 2813 501888857 501888606 4.430000e-98 368
31 TraesCS6A01G389800 chr1A 79.433 423 34 11 2195 2594 41159004 41158612 1.670000e-62 250
32 TraesCS6A01G389800 chr1A 77.692 260 52 3 1073 1329 9103940 9103684 1.350000e-33 154
33 TraesCS6A01G389800 chr7A 88.401 319 16 3 2284 2581 663798595 663798277 5.730000e-97 364
34 TraesCS6A01G389800 chr7A 92.520 254 17 2 2560 2813 689455132 689454881 2.060000e-96 363
35 TraesCS6A01G389800 chr7A 92.647 204 13 2 2256 2458 22098977 22098775 2.740000e-75 292
36 TraesCS6A01G389800 chr7A 84.142 309 31 14 2286 2581 49130428 49130125 1.650000e-72 283
37 TraesCS6A01G389800 chr7A 75.321 312 63 12 1025 1329 671219685 671219381 1.360000e-28 137
38 TraesCS6A01G389800 chr2B 85.886 333 24 3 2285 2594 135562376 135562708 1.610000e-87 333
39 TraesCS6A01G389800 chr2B 79.703 404 72 9 2199 2594 767460897 767460496 1.650000e-72 283
40 TraesCS6A01G389800 chr5D 84.066 364 34 13 2256 2595 368316783 368316420 2.090000e-86 329
41 TraesCS6A01G389800 chr5D 84.579 214 30 3 2283 2493 463922373 463922586 2.840000e-50 209
42 TraesCS6A01G389800 chr7B 80.378 423 30 18 2195 2594 25651694 25651302 3.570000e-69 272
43 TraesCS6A01G389800 chr7B 74.608 319 65 14 1019 1329 645256153 645256463 2.940000e-25 126
44 TraesCS6A01G389800 chr5B 78.692 413 56 16 2195 2594 507739510 507739117 2.160000e-61 246
45 TraesCS6A01G389800 chr1B 81.437 334 24 11 2285 2594 22923604 22923285 3.620000e-59 239
46 TraesCS6A01G389800 chr1B 87.293 181 21 2 2283 2462 69721352 69721531 3.670000e-49 206
47 TraesCS6A01G389800 chr1B 78.169 284 60 2 1047 1329 349564067 349563785 2.230000e-41 180
48 TraesCS6A01G389800 chr1B 78.309 272 53 3 1062 1330 9845524 9845792 1.340000e-38 171
49 TraesCS6A01G389800 chr1B 93.694 111 6 1 2188 2298 169807818 169807709 6.230000e-37 165
50 TraesCS6A01G389800 chr1B 77.407 270 55 4 1064 1330 349569522 349569788 3.750000e-34 156
51 TraesCS6A01G389800 chr1D 79.225 284 57 2 1047 1329 262252775 262253057 2.210000e-46 196
52 TraesCS6A01G389800 chr1D 77.432 257 58 0 1074 1330 7707093 7707349 1.350000e-33 154
53 TraesCS6A01G389800 chr1D 79.191 173 36 0 1064 1236 7745109 7745281 1.370000e-23 121
54 TraesCS6A01G389800 chr7D 74.306 288 64 8 1047 1329 579536240 579535958 2.290000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G389800 chr6A 605050666 605053478 2812 True 5195.0 5195 100.0000 1 2813 1 chr6A.!!$R4 2812
1 TraesCS6A01G389800 chr6B 697461262 697464070 2808 False 1289.5 2405 89.1935 25 2198 2 chr6B.!!$F5 2173
2 TraesCS6A01G389800 chr6B 697532764 697536523 3759 False 961.0 2182 89.5700 29 2198 3 chr6B.!!$F6 2169
3 TraesCS6A01G389800 chr6B 697437214 697439057 1843 False 867.0 1083 85.6195 983 2041 2 chr6B.!!$F4 1058
4 TraesCS6A01G389800 chr6B 697520021 697520568 547 False 569.0 569 85.3360 983 1548 1 chr6B.!!$F3 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 845 0.039617 TTTCGCTTTTGGGCATGTCG 60.040 50.0 0.0 0.0 0.0 4.35 F
1419 3668 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 3684 0.110644 GCGACTAGCTGCAAACACAC 60.111 55.0 1.02 0.0 44.04 3.82 R
2339 4594 0.098376 AAGACTACGCCGACGACATC 59.902 55.0 0.00 0.0 43.93 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.353342 AGGGCAAGCCTCTCTTTTG 57.647 52.632 11.40 0.00 36.10 2.44
19 20 0.897401 AGGGCAAGCCTCTCTTTTGC 60.897 55.000 11.40 0.00 44.81 3.68
20 21 0.897401 GGGCAAGCCTCTCTTTTGCT 60.897 55.000 11.40 0.00 44.88 3.91
21 22 1.614317 GGGCAAGCCTCTCTTTTGCTA 60.614 52.381 11.40 0.00 44.88 3.49
22 23 2.162681 GGCAAGCCTCTCTTTTGCTAA 58.837 47.619 3.29 0.00 44.88 3.09
23 24 2.558359 GGCAAGCCTCTCTTTTGCTAAA 59.442 45.455 3.29 0.00 44.88 1.85
24 25 3.005791 GGCAAGCCTCTCTTTTGCTAAAA 59.994 43.478 3.29 0.00 44.88 1.52
25 26 4.501400 GGCAAGCCTCTCTTTTGCTAAAAA 60.501 41.667 3.29 0.00 44.88 1.94
63 64 2.553086 CATTTTTGCAACAGTGGCACT 58.447 42.857 15.88 15.88 41.75 4.40
75 76 2.623416 CAGTGGCACTCGATATGTAGGA 59.377 50.000 19.13 0.00 0.00 2.94
81 82 2.029828 CACTCGATATGTAGGAGGTGGC 60.030 54.545 0.00 0.00 32.11 5.01
91 96 2.756400 GAGGTGGCACATGGACCA 59.244 61.111 20.82 0.00 44.52 4.02
166 797 2.354704 CGCCTCCTAACAGTTGATTCCA 60.355 50.000 0.00 0.00 0.00 3.53
199 840 2.093973 TCTTGTTTTTCGCTTTTGGGCA 60.094 40.909 0.00 0.00 0.00 5.36
202 843 2.209273 GTTTTTCGCTTTTGGGCATGT 58.791 42.857 0.00 0.00 0.00 3.21
204 845 0.039617 TTTCGCTTTTGGGCATGTCG 60.040 50.000 0.00 0.00 0.00 4.35
260 903 8.175925 TCATACTTAGATCTCTTGTCTGATGG 57.824 38.462 0.00 0.00 0.00 3.51
317 965 4.561735 GAGAGAACTCTGATCCGGTAAG 57.438 50.000 9.16 0.00 40.61 2.34
469 1422 0.389166 CAAGGACGAGACAGGACTGC 60.389 60.000 0.00 0.00 0.00 4.40
493 1446 3.358111 TGGAAAGTGACACAACAGGAA 57.642 42.857 8.59 0.00 0.00 3.36
566 1521 0.681887 TCGCCTCTCAACCGTCCATA 60.682 55.000 0.00 0.00 0.00 2.74
600 1555 1.614413 CGGTCCTACCTATCTTCCTGC 59.386 57.143 0.00 0.00 35.66 4.85
610 1566 0.911769 ATCTTCCTGCATCGGAACCA 59.088 50.000 3.37 0.00 38.12 3.67
615 1571 0.893270 CCTGCATCGGAACCAACCAA 60.893 55.000 0.00 0.00 0.00 3.67
619 1575 1.335872 GCATCGGAACCAACCAAACAG 60.336 52.381 0.00 0.00 0.00 3.16
636 1592 2.029623 ACAGGCACGGTTAGATACGAT 58.970 47.619 0.00 0.00 27.95 3.73
654 2898 3.558829 ACGATCGAGCTCAAATCTACGTA 59.441 43.478 24.34 0.00 0.00 3.57
658 2902 1.774085 GAGCTCAAATCTACGTACGCG 59.226 52.381 16.72 3.53 44.93 6.01
760 3004 4.681978 GGCAACAGCCGGACGACT 62.682 66.667 5.05 0.00 38.93 4.18
762 3006 2.954753 GCAACAGCCGGACGACTTG 61.955 63.158 5.05 0.00 0.00 3.16
781 3025 1.898574 CAAGGGCACGCTTCCTGTT 60.899 57.895 0.00 0.00 32.95 3.16
787 3031 0.238553 GCACGCTTCCTGTTTTCCTC 59.761 55.000 0.00 0.00 0.00 3.71
827 3071 2.815478 CTCATCGTAAGCTTGTCCTCC 58.185 52.381 9.86 0.00 37.18 4.30
851 3095 0.396811 ATAATCCCTACACGGCAGCC 59.603 55.000 0.00 0.00 0.00 4.85
927 3171 9.142515 TGTTTTGATTGAGAATTTATGCATGTC 57.857 29.630 10.16 1.44 0.00 3.06
930 3174 3.590720 TGAGAATTTATGCATGTCGCG 57.409 42.857 10.16 0.00 46.97 5.87
938 3182 0.726827 ATGCATGTCGCGTCGATTTT 59.273 45.000 5.77 0.00 46.97 1.82
1017 3263 2.435059 GCAGGGGAAGACGAGCAC 60.435 66.667 0.00 0.00 0.00 4.40
1140 3387 1.884235 CCAACAAGAGCGACCTTCTT 58.116 50.000 0.00 0.00 35.34 2.52
1143 3390 3.134458 CAACAAGAGCGACCTTCTTCTT 58.866 45.455 0.00 0.00 32.75 2.52
1308 3555 1.621992 CTAGGGCTCGATTCTAGGCA 58.378 55.000 12.81 0.00 41.11 4.75
1333 3580 5.702865 CCTACATTGACAACAAGGTTCATG 58.297 41.667 5.66 0.00 46.48 3.07
1341 3588 8.815141 TTGACAACAAGGTTCATGATTAATTG 57.185 30.769 0.00 2.76 0.00 2.32
1350 3597 8.310122 AGGTTCATGATTAATTGCCATTACTT 57.690 30.769 0.00 0.00 0.00 2.24
1357 3604 5.459536 TTAATTGCCATTACTTGTGCACA 57.540 34.783 17.42 17.42 33.18 4.57
1360 3607 2.237643 TGCCATTACTTGTGCACATGT 58.762 42.857 32.80 32.80 37.83 3.21
1366 3613 6.086222 CCATTACTTGTGCACATGTTAGTTC 58.914 40.000 34.61 0.14 36.02 3.01
1368 3615 4.818534 ACTTGTGCACATGTTAGTTCTG 57.181 40.909 27.48 8.74 31.23 3.02
1397 3646 9.869844 AGTTTGTCGATGTAGTACGTAATATAC 57.130 33.333 5.98 6.49 0.00 1.47
1400 3649 9.650371 TTGTCGATGTAGTACGTAATATACAAC 57.350 33.333 16.10 13.50 32.31 3.32
1411 3660 5.534721 CGTAATATACAACGTGTGTGTGTG 58.465 41.667 11.90 0.00 41.89 3.82
1415 3664 0.515127 ACAACGTGTGTGTGTGTGTG 59.485 50.000 0.00 0.00 39.72 3.82
1419 3668 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1423 3672 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1426 3675 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1427 3676 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1428 3677 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1429 3678 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1430 3679 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
1431 3680 0.886490 TGTGTGTGTGTGTGTGTGCA 60.886 50.000 0.00 0.00 0.00 4.57
1500 3749 3.745458 GCAAGACAGACAAGGAGAAAGAG 59.255 47.826 0.00 0.00 0.00 2.85
1535 3784 4.874977 GCTAGCGGCGGTGGAGAC 62.875 72.222 26.44 4.68 0.00 3.36
1649 3898 3.526211 CATGGATGCAAGGGACCAT 57.474 52.632 0.00 0.00 42.83 3.55
1710 3959 1.381928 CGCTTCTGCTGGCATGGATT 61.382 55.000 0.00 0.00 36.97 3.01
1722 3971 1.097232 CATGGATTGAGCGCTTTGGA 58.903 50.000 13.26 0.00 0.00 3.53
1728 3977 1.512926 TTGAGCGCTTTGGAGAACTC 58.487 50.000 13.26 0.00 0.00 3.01
1737 3986 1.048601 TTGGAGAACTCGAACCTGCT 58.951 50.000 0.00 0.00 0.00 4.24
1800 4049 2.270352 AGATGAAACGTGCCCAAAGA 57.730 45.000 0.00 0.00 0.00 2.52
1856 4105 6.790232 ATAGCTAAGGATCTTGATAGGAGC 57.210 41.667 0.00 0.00 0.00 4.70
1916 4169 7.768582 TGTTCTTTCTCTCACATGTTTCTTGTA 59.231 33.333 0.00 0.00 0.00 2.41
1921 4174 8.450578 TTCTCTCACATGTTTCTTGTAACAAT 57.549 30.769 0.00 0.00 41.02 2.71
1923 4176 6.437928 TCTCACATGTTTCTTGTAACAATGC 58.562 36.000 0.00 0.00 41.02 3.56
1925 4178 5.976534 TCACATGTTTCTTGTAACAATGCAC 59.023 36.000 0.00 0.00 41.02 4.57
1927 4180 6.255237 CACATGTTTCTTGTAACAATGCACAA 59.745 34.615 0.00 1.86 41.02 3.33
2045 4299 4.081406 TGATGGAGTGAAAGGATTGTTGG 58.919 43.478 0.00 0.00 0.00 3.77
2046 4300 3.874383 TGGAGTGAAAGGATTGTTGGA 57.126 42.857 0.00 0.00 0.00 3.53
2056 4310 9.271828 GTGAAAGGATTGTTGGAACATATTTTT 57.728 29.630 0.00 0.00 39.30 1.94
2057 4311 9.487790 TGAAAGGATTGTTGGAACATATTTTTC 57.512 29.630 0.00 3.94 39.30 2.29
2067 4321 5.359576 TGGAACATATTTTTCATTCCTCCCG 59.640 40.000 0.00 0.00 39.70 5.14
2069 4323 6.127451 GGAACATATTTTTCATTCCTCCCGTT 60.127 38.462 0.00 0.00 36.65 4.44
2072 4326 7.116736 ACATATTTTTCATTCCTCCCGTTAGT 58.883 34.615 0.00 0.00 0.00 2.24
2151 4406 5.334802 GGTTTTGCATTTAAAATCCTGCCAC 60.335 40.000 8.60 4.02 32.71 5.01
2198 4453 6.998802 ACATTCTACATTGATCCTAGCCTAC 58.001 40.000 0.00 0.00 0.00 3.18
2200 4455 6.406692 TTCTACATTGATCCTAGCCTACAC 57.593 41.667 0.00 0.00 0.00 2.90
2201 4456 5.706447 TCTACATTGATCCTAGCCTACACT 58.294 41.667 0.00 0.00 0.00 3.55
2202 4457 6.849151 TCTACATTGATCCTAGCCTACACTA 58.151 40.000 0.00 0.00 0.00 2.74
2203 4458 5.793030 ACATTGATCCTAGCCTACACTAC 57.207 43.478 0.00 0.00 0.00 2.73
2204 4459 5.208890 ACATTGATCCTAGCCTACACTACA 58.791 41.667 0.00 0.00 0.00 2.74
2206 4461 3.833732 TGATCCTAGCCTACACTACAGG 58.166 50.000 0.00 0.00 36.16 4.00
2209 4464 2.851194 TCCTAGCCTACACTACAGGACT 59.149 50.000 0.00 0.00 34.91 3.85
2210 4465 3.117963 TCCTAGCCTACACTACAGGACTC 60.118 52.174 0.00 0.00 34.91 3.36
2212 4467 0.100861 GCCTACACTACAGGACTCGC 59.899 60.000 0.00 0.00 34.91 5.03
2213 4468 0.377554 CCTACACTACAGGACTCGCG 59.622 60.000 0.00 0.00 34.91 5.87
2214 4469 0.377554 CTACACTACAGGACTCGCGG 59.622 60.000 6.13 0.00 0.00 6.46
2215 4470 0.321919 TACACTACAGGACTCGCGGT 60.322 55.000 6.13 2.39 0.00 5.68
2216 4471 1.136984 CACTACAGGACTCGCGGTC 59.863 63.158 16.40 16.40 43.79 4.79
2217 4472 1.002379 ACTACAGGACTCGCGGTCT 60.002 57.895 21.54 9.40 43.97 3.85
2218 4473 0.251354 ACTACAGGACTCGCGGTCTA 59.749 55.000 21.54 9.91 43.97 2.59
2219 4474 1.134159 ACTACAGGACTCGCGGTCTAT 60.134 52.381 21.54 11.74 43.97 1.98
2221 4476 1.299468 CAGGACTCGCGGTCTATGC 60.299 63.158 21.54 9.51 43.97 3.14
2222 4477 2.027751 GGACTCGCGGTCTATGCC 59.972 66.667 21.54 7.03 43.97 4.40
2223 4478 2.491022 GGACTCGCGGTCTATGCCT 61.491 63.158 21.54 0.00 43.97 4.75
2225 4480 2.659897 CTCGCGGTCTATGCCTGC 60.660 66.667 6.13 0.00 0.00 4.85
2226 4481 4.569023 TCGCGGTCTATGCCTGCG 62.569 66.667 6.13 7.26 45.46 5.18
2227 4482 4.569023 CGCGGTCTATGCCTGCGA 62.569 66.667 7.80 0.00 46.27 5.10
2229 4484 2.279517 CGGTCTATGCCTGCGACC 60.280 66.667 5.03 5.03 42.90 4.79
2231 4486 1.521681 GGTCTATGCCTGCGACCAC 60.522 63.158 9.07 0.00 45.08 4.16
2233 4488 2.586079 CTATGCCTGCGACCACGG 60.586 66.667 0.00 0.00 40.15 4.94
2234 4489 4.155733 TATGCCTGCGACCACGGG 62.156 66.667 0.00 0.00 40.15 5.28
2246 4501 2.278596 CACGGGTCGTCGGCATAG 60.279 66.667 0.00 0.00 38.32 2.23
2247 4502 3.524606 ACGGGTCGTCGGCATAGG 61.525 66.667 0.00 0.00 33.69 2.57
2248 4503 4.944372 CGGGTCGTCGGCATAGGC 62.944 72.222 0.00 0.00 40.13 3.93
2285 4540 2.821991 AGATCTATGCCTACGGTTGC 57.178 50.000 0.00 0.00 0.00 4.17
2286 4541 1.344763 AGATCTATGCCTACGGTTGCC 59.655 52.381 0.00 0.00 0.00 4.52
2314 4569 2.821991 AGATCTATGCCTACGGTTGC 57.178 50.000 0.00 0.00 0.00 4.17
2315 4570 1.344763 AGATCTATGCCTACGGTTGCC 59.655 52.381 0.00 0.00 0.00 4.52
2332 4587 2.025727 CGTCGGCATAGACCCGTC 59.974 66.667 0.00 0.00 45.71 4.79
2333 4588 2.025727 GTCGGCATAGACCCGTCG 59.974 66.667 0.00 0.00 45.71 5.12
2334 4589 3.214123 TCGGCATAGACCCGTCGG 61.214 66.667 3.60 3.60 45.71 4.79
2335 4590 4.944372 CGGCATAGACCCGTCGGC 62.944 72.222 5.50 0.00 40.84 5.54
2336 4591 4.944372 GGCATAGACCCGTCGGCG 62.944 72.222 0.29 0.29 37.95 6.46
2337 4592 4.203076 GCATAGACCCGTCGGCGT 62.203 66.667 9.28 5.34 36.15 5.68
2338 4593 2.837883 GCATAGACCCGTCGGCGTA 61.838 63.158 9.28 0.00 36.15 4.42
2339 4594 1.281960 CATAGACCCGTCGGCGTAG 59.718 63.158 9.28 1.04 36.15 3.51
2340 4595 1.146930 ATAGACCCGTCGGCGTAGA 59.853 57.895 9.28 0.00 36.15 2.59
2341 4596 0.250640 ATAGACCCGTCGGCGTAGAT 60.251 55.000 9.28 0.00 36.15 1.98
2342 4597 1.162181 TAGACCCGTCGGCGTAGATG 61.162 60.000 9.28 0.00 36.15 2.90
2343 4598 2.753043 ACCCGTCGGCGTAGATGT 60.753 61.111 9.28 0.00 36.15 3.06
2344 4599 2.025727 CCCGTCGGCGTAGATGTC 59.974 66.667 9.28 0.00 36.15 3.06
2345 4600 2.352001 CCGTCGGCGTAGATGTCG 60.352 66.667 9.28 2.11 36.15 4.35
2346 4601 2.402388 CGTCGGCGTAGATGTCGT 59.598 61.111 6.85 0.00 0.00 4.34
2347 4602 1.650536 CGTCGGCGTAGATGTCGTC 60.651 63.158 6.85 0.00 0.00 4.20
2350 4605 2.654404 GGCGTAGATGTCGTCGGC 60.654 66.667 0.00 0.00 41.00 5.54
2351 4606 3.017314 GCGTAGATGTCGTCGGCG 61.017 66.667 1.15 1.15 39.92 6.46
2352 4607 2.402388 CGTAGATGTCGTCGGCGT 59.598 61.111 10.18 0.00 39.49 5.68
2353 4608 1.637934 CGTAGATGTCGTCGGCGTA 59.362 57.895 10.18 0.00 39.49 4.42
2354 4609 0.382758 CGTAGATGTCGTCGGCGTAG 60.383 60.000 10.18 1.97 39.49 3.51
2355 4610 0.654683 GTAGATGTCGTCGGCGTAGT 59.345 55.000 10.18 0.00 39.49 2.73
2356 4611 0.933097 TAGATGTCGTCGGCGTAGTC 59.067 55.000 10.18 5.94 39.49 2.59
2357 4612 0.743701 AGATGTCGTCGGCGTAGTCT 60.744 55.000 10.18 8.34 39.49 3.24
2358 4613 0.098376 GATGTCGTCGGCGTAGTCTT 59.902 55.000 10.18 0.00 39.49 3.01
2359 4614 0.179171 ATGTCGTCGGCGTAGTCTTG 60.179 55.000 10.18 0.00 39.49 3.02
2360 4615 1.208614 GTCGTCGGCGTAGTCTTGT 59.791 57.895 10.18 0.00 39.49 3.16
2361 4616 0.792356 GTCGTCGGCGTAGTCTTGTC 60.792 60.000 10.18 0.00 39.49 3.18
2362 4617 1.208358 CGTCGGCGTAGTCTTGTCA 59.792 57.895 6.85 0.00 0.00 3.58
2363 4618 0.793478 CGTCGGCGTAGTCTTGTCAG 60.793 60.000 6.85 0.00 0.00 3.51
2364 4619 0.520404 GTCGGCGTAGTCTTGTCAGA 59.480 55.000 6.85 0.00 0.00 3.27
2365 4620 1.068748 GTCGGCGTAGTCTTGTCAGAA 60.069 52.381 6.85 0.00 0.00 3.02
2366 4621 1.610038 TCGGCGTAGTCTTGTCAGAAA 59.390 47.619 6.85 0.00 0.00 2.52
2367 4622 1.986378 CGGCGTAGTCTTGTCAGAAAG 59.014 52.381 0.00 0.00 0.00 2.62
2368 4623 2.607282 CGGCGTAGTCTTGTCAGAAAGT 60.607 50.000 0.00 0.00 0.00 2.66
2369 4624 2.987821 GGCGTAGTCTTGTCAGAAAGTC 59.012 50.000 0.00 0.00 0.00 3.01
2370 4625 2.657372 GCGTAGTCTTGTCAGAAAGTCG 59.343 50.000 0.00 0.00 0.00 4.18
2371 4626 3.235195 CGTAGTCTTGTCAGAAAGTCGG 58.765 50.000 0.00 0.00 0.00 4.79
2372 4627 2.156343 AGTCTTGTCAGAAAGTCGGC 57.844 50.000 0.00 0.00 0.00 5.54
2373 4628 1.412710 AGTCTTGTCAGAAAGTCGGCA 59.587 47.619 0.00 0.00 0.00 5.69
2374 4629 2.037772 AGTCTTGTCAGAAAGTCGGCAT 59.962 45.455 0.00 0.00 0.00 4.40
2375 4630 3.258372 AGTCTTGTCAGAAAGTCGGCATA 59.742 43.478 0.00 0.00 0.00 3.14
2376 4631 3.614616 GTCTTGTCAGAAAGTCGGCATAG 59.385 47.826 0.00 0.00 0.00 2.23
2377 4632 3.258372 TCTTGTCAGAAAGTCGGCATAGT 59.742 43.478 0.00 0.00 0.00 2.12
2378 4633 4.461431 TCTTGTCAGAAAGTCGGCATAGTA 59.539 41.667 0.00 0.00 0.00 1.82
2379 4634 5.127194 TCTTGTCAGAAAGTCGGCATAGTAT 59.873 40.000 0.00 0.00 0.00 2.12
2380 4635 6.320418 TCTTGTCAGAAAGTCGGCATAGTATA 59.680 38.462 0.00 0.00 0.00 1.47
2381 4636 6.073327 TGTCAGAAAGTCGGCATAGTATAG 57.927 41.667 0.00 0.00 0.00 1.31
2382 4637 4.918583 GTCAGAAAGTCGGCATAGTATAGC 59.081 45.833 0.00 0.00 0.00 2.97
2388 4643 3.715854 GGCATAGTATAGCCGTCGG 57.284 57.895 6.99 6.99 41.70 4.79
2399 4654 3.138625 CCGTCGGCATAGGGACAT 58.861 61.111 0.00 0.00 32.74 3.06
2400 4655 2.347630 CCGTCGGCATAGGGACATA 58.652 57.895 0.00 0.00 32.74 2.29
2401 4656 0.895530 CCGTCGGCATAGGGACATAT 59.104 55.000 0.00 0.00 32.74 1.78
2402 4657 1.404181 CCGTCGGCATAGGGACATATG 60.404 57.143 0.00 0.00 36.43 1.78
2407 4662 2.754648 CATAGGGACATATGCCGCG 58.245 57.895 1.58 0.00 42.42 6.46
2408 4663 0.740868 CATAGGGACATATGCCGCGG 60.741 60.000 24.05 24.05 42.42 6.46
2409 4664 2.521958 ATAGGGACATATGCCGCGGC 62.522 60.000 42.35 42.35 42.42 6.53
2411 4666 4.626081 GGACATATGCCGCGGCCT 62.626 66.667 44.42 37.34 41.09 5.19
2412 4667 3.349006 GACATATGCCGCGGCCTG 61.349 66.667 44.42 36.63 41.09 4.85
2413 4668 4.935495 ACATATGCCGCGGCCTGG 62.935 66.667 44.42 31.28 41.09 4.45
2443 4698 2.601562 GGCATAGTTTAGCCGTCGG 58.398 57.895 6.99 6.99 41.70 4.79
2454 4709 2.051345 CCGTCGGCAGTGTTTTGC 60.051 61.111 0.00 0.00 43.34 3.68
2455 4710 2.425124 CGTCGGCAGTGTTTTGCG 60.425 61.111 0.00 0.00 45.00 4.85
2456 4711 2.713154 GTCGGCAGTGTTTTGCGT 59.287 55.556 0.00 0.00 45.00 5.24
2457 4712 1.368850 GTCGGCAGTGTTTTGCGTC 60.369 57.895 0.00 0.00 45.00 5.19
2458 4713 2.425124 CGGCAGTGTTTTGCGTCG 60.425 61.111 0.00 0.00 45.00 5.12
2459 4714 2.713154 GGCAGTGTTTTGCGTCGT 59.287 55.556 0.00 0.00 45.00 4.34
2460 4715 1.368850 GGCAGTGTTTTGCGTCGTC 60.369 57.895 0.00 0.00 45.00 4.20
2461 4716 1.350319 GCAGTGTTTTGCGTCGTCA 59.650 52.632 0.00 0.00 33.90 4.35
2462 4717 0.247894 GCAGTGTTTTGCGTCGTCAA 60.248 50.000 0.00 0.00 33.90 3.18
2463 4718 1.792273 GCAGTGTTTTGCGTCGTCAAA 60.792 47.619 9.70 9.70 33.90 2.69
2464 4719 2.510874 CAGTGTTTTGCGTCGTCAAAA 58.489 42.857 17.63 17.63 41.87 2.44
2465 4720 2.525891 CAGTGTTTTGCGTCGTCAAAAG 59.474 45.455 20.31 10.41 43.88 2.27
2466 4721 1.251762 GTGTTTTGCGTCGTCAAAAGC 59.748 47.619 20.31 16.48 43.88 3.51
2467 4722 0.492737 GTTTTGCGTCGTCAAAAGCG 59.507 50.000 20.31 0.00 43.88 4.68
2468 4723 3.312495 GTTTTGCGTCGTCAAAAGCGC 62.312 52.381 20.31 0.00 43.88 5.92
2470 4725 2.497628 GCGTCGTCAAAAGCGCTG 60.498 61.111 12.58 0.00 45.48 5.18
2471 4726 2.938823 GCGTCGTCAAAAGCGCTGA 61.939 57.895 12.58 0.95 45.48 4.26
2472 4727 1.154836 CGTCGTCAAAAGCGCTGAC 60.155 57.895 12.58 14.81 39.89 3.51
2477 4732 1.870765 GTCAAAAGCGCTGACGAATC 58.129 50.000 12.58 0.00 43.93 2.52
2478 4733 0.438445 TCAAAAGCGCTGACGAATCG 59.562 50.000 12.58 0.00 43.93 3.34
2479 4734 0.163788 CAAAAGCGCTGACGAATCGT 59.836 50.000 12.58 8.47 45.10 3.73
2480 4735 0.163788 AAAAGCGCTGACGAATCGTG 59.836 50.000 14.87 0.00 41.37 4.35
2481 4736 2.227968 AAAGCGCTGACGAATCGTGC 62.228 55.000 14.87 10.72 41.37 5.34
2482 4737 3.478394 GCGCTGACGAATCGTGCA 61.478 61.111 14.87 10.17 41.37 4.57
2483 4738 3.010585 GCGCTGACGAATCGTGCAA 62.011 57.895 14.87 0.00 41.37 4.08
2484 4739 1.225475 CGCTGACGAATCGTGCAAC 60.225 57.895 14.87 5.86 41.37 4.17
2503 4758 4.521075 CCACGTGGCAGAGGTATG 57.479 61.111 24.02 0.00 0.00 2.39
2504 4759 1.815421 CCACGTGGCAGAGGTATGC 60.815 63.158 24.02 0.00 45.74 3.14
2505 4760 1.219124 CACGTGGCAGAGGTATGCT 59.781 57.895 7.95 0.00 45.75 3.79
2506 4761 1.086067 CACGTGGCAGAGGTATGCTG 61.086 60.000 7.95 0.00 45.75 4.41
2507 4762 1.257750 ACGTGGCAGAGGTATGCTGA 61.258 55.000 0.00 0.00 45.75 4.26
2508 4763 0.807667 CGTGGCAGAGGTATGCTGAC 60.808 60.000 0.00 0.00 45.75 3.51
2509 4764 0.807667 GTGGCAGAGGTATGCTGACG 60.808 60.000 0.00 0.00 44.47 4.35
2510 4765 1.227380 GGCAGAGGTATGCTGACGG 60.227 63.158 0.00 0.00 45.75 4.79
2511 4766 1.884926 GCAGAGGTATGCTGACGGC 60.885 63.158 0.00 0.00 43.07 5.68
2512 4767 1.819229 CAGAGGTATGCTGACGGCT 59.181 57.895 7.96 0.00 42.39 5.52
2513 4768 0.176680 CAGAGGTATGCTGACGGCTT 59.823 55.000 7.96 3.68 42.39 4.35
2514 4769 0.905357 AGAGGTATGCTGACGGCTTT 59.095 50.000 7.96 0.00 42.39 3.51
2515 4770 1.009829 GAGGTATGCTGACGGCTTTG 58.990 55.000 7.96 0.00 42.39 2.77
2516 4771 1.026718 AGGTATGCTGACGGCTTTGC 61.027 55.000 7.96 0.00 42.39 3.68
2517 4772 1.429423 GTATGCTGACGGCTTTGCC 59.571 57.895 7.96 0.00 46.75 4.52
2533 4788 4.251760 CCGTCGGCATATCTCTGC 57.748 61.111 0.00 0.00 41.53 4.26
2540 4795 2.609825 GCATATCTCTGCCACGTGG 58.390 57.895 30.66 30.66 36.10 4.94
2552 4807 3.548484 ACGTGGCAACCCGTGGTA 61.548 61.111 0.51 0.00 33.12 3.25
2553 4808 3.045492 CGTGGCAACCCGTGGTAC 61.045 66.667 0.00 0.00 33.12 3.34
2554 4809 2.428622 GTGGCAACCCGTGGTACT 59.571 61.111 0.00 0.00 33.12 2.73
2555 4810 1.670083 GTGGCAACCCGTGGTACTC 60.670 63.158 0.00 0.00 33.12 2.59
2556 4811 2.046604 GGCAACCCGTGGTACTCC 60.047 66.667 0.00 0.00 33.12 3.85
2557 4812 2.590114 GGCAACCCGTGGTACTCCT 61.590 63.158 0.00 0.00 33.12 3.69
2558 4813 1.375523 GCAACCCGTGGTACTCCTG 60.376 63.158 0.00 0.00 33.12 3.86
2559 4814 1.295423 CAACCCGTGGTACTCCTGG 59.705 63.158 0.00 0.00 33.12 4.45
2560 4815 1.152183 AACCCGTGGTACTCCTGGT 60.152 57.895 0.00 0.00 33.12 4.00
2561 4816 1.477685 AACCCGTGGTACTCCTGGTG 61.478 60.000 0.00 0.00 33.12 4.17
2562 4817 2.656069 CCCGTGGTACTCCTGGTGG 61.656 68.421 0.33 0.00 34.23 4.61
2563 4818 2.264794 CGTGGTACTCCTGGTGGC 59.735 66.667 0.33 0.00 34.23 5.01
2564 4819 2.579657 CGTGGTACTCCTGGTGGCA 61.580 63.158 0.33 0.00 34.23 4.92
2565 4820 1.296715 GTGGTACTCCTGGTGGCAG 59.703 63.158 0.33 0.00 34.23 4.85
2566 4821 1.918293 TGGTACTCCTGGTGGCAGG 60.918 63.158 0.00 0.00 43.59 4.85
2568 4823 1.597461 GTACTCCTGGTGGCAGGAC 59.403 63.158 0.00 0.00 45.70 3.85
2569 4824 0.905337 GTACTCCTGGTGGCAGGACT 60.905 60.000 0.00 0.00 45.70 3.85
2570 4825 0.708209 TACTCCTGGTGGCAGGACTA 59.292 55.000 0.00 0.00 45.70 2.59
2571 4826 0.043334 ACTCCTGGTGGCAGGACTAT 59.957 55.000 0.00 0.00 45.70 2.12
2572 4827 0.467384 CTCCTGGTGGCAGGACTATG 59.533 60.000 0.00 0.00 45.70 2.23
2573 4828 1.153086 CCTGGTGGCAGGACTATGC 60.153 63.158 0.00 0.00 45.00 3.14
2579 4834 2.279517 GCAGGACTATGCCGACGG 60.280 66.667 10.29 10.29 40.43 4.79
2601 4856 2.354305 CGTCGGCATACCTACGCC 60.354 66.667 0.00 0.00 46.50 5.68
2606 4861 4.274700 GCATACCTACGCCGCGGA 62.275 66.667 33.48 7.84 0.00 5.54
2607 4862 2.649034 CATACCTACGCCGCGGAT 59.351 61.111 33.48 19.22 0.00 4.18
2608 4863 1.443872 CATACCTACGCCGCGGATC 60.444 63.158 33.48 11.71 0.00 3.36
2609 4864 2.974489 ATACCTACGCCGCGGATCG 61.974 63.158 33.48 26.42 38.08 3.69
2627 4882 4.088762 GTGACGTGGCATGCGGTG 62.089 66.667 12.44 5.86 0.00 4.94
2628 4883 4.306967 TGACGTGGCATGCGGTGA 62.307 61.111 12.44 0.61 0.00 4.02
2629 4884 2.819595 GACGTGGCATGCGGTGAT 60.820 61.111 12.44 0.00 0.00 3.06
2630 4885 1.520564 GACGTGGCATGCGGTGATA 60.521 57.895 12.44 0.00 0.00 2.15
2631 4886 0.880278 GACGTGGCATGCGGTGATAT 60.880 55.000 12.44 0.00 0.00 1.63
2632 4887 1.159713 ACGTGGCATGCGGTGATATG 61.160 55.000 12.44 1.94 0.00 1.78
2633 4888 1.283793 GTGGCATGCGGTGATATGC 59.716 57.895 12.44 0.00 46.76 3.14
2667 4922 2.493030 CGACCGTCGGCATAGGTT 59.507 61.111 12.28 0.00 38.57 3.50
2668 4923 1.153706 CGACCGTCGGCATAGGTTT 60.154 57.895 12.28 0.00 38.57 3.27
2669 4924 1.418342 CGACCGTCGGCATAGGTTTG 61.418 60.000 12.28 0.00 38.57 2.93
2670 4925 0.108520 GACCGTCGGCATAGGTTTGA 60.109 55.000 12.28 0.00 38.57 2.69
2671 4926 0.390735 ACCGTCGGCATAGGTTTGAC 60.391 55.000 12.28 0.00 33.96 3.18
2674 4929 1.702491 GTCGGCATAGGTTTGACGGC 61.702 60.000 0.00 0.00 46.63 5.68
2675 4930 2.808958 CGGCATAGGTTTGACGGCG 61.809 63.158 4.80 4.80 44.46 6.46
2676 4931 1.743995 GGCATAGGTTTGACGGCGT 60.744 57.895 14.65 14.65 0.00 5.68
2677 4932 1.303091 GGCATAGGTTTGACGGCGTT 61.303 55.000 16.19 0.00 0.00 4.84
2678 4933 1.361793 GCATAGGTTTGACGGCGTTA 58.638 50.000 16.19 7.39 0.00 3.18
2691 4946 3.978373 CGTTAGCCGCTAGTCACG 58.022 61.111 8.33 8.33 0.00 4.35
2700 4955 3.834799 CTAGTCACGGGCGGGGAC 61.835 72.222 18.72 18.72 0.00 4.46
2715 4970 4.309950 GACGTCGGGCCCACAGTT 62.310 66.667 24.92 0.02 0.00 3.16
2717 4972 2.234913 GACGTCGGGCCCACAGTTAT 62.235 60.000 24.92 0.00 0.00 1.89
2718 4973 0.971959 ACGTCGGGCCCACAGTTATA 60.972 55.000 24.92 0.00 0.00 0.98
2719 4974 0.529119 CGTCGGGCCCACAGTTATAC 60.529 60.000 24.92 5.10 0.00 1.47
2721 4976 1.227438 CGGGCCCACAGTTATACCG 60.227 63.158 24.92 0.00 0.00 4.02
2722 4977 1.678598 CGGGCCCACAGTTATACCGA 61.679 60.000 24.92 0.00 42.19 4.69
2723 4978 0.179065 GGGCCCACAGTTATACCGAC 60.179 60.000 19.95 0.00 0.00 4.79
2724 4979 0.529119 GGCCCACAGTTATACCGACG 60.529 60.000 0.00 0.00 0.00 5.12
2725 4980 0.529119 GCCCACAGTTATACCGACGG 60.529 60.000 13.61 13.61 0.00 4.79
2726 4981 0.529119 CCCACAGTTATACCGACGGC 60.529 60.000 15.39 0.00 0.00 5.68
2727 4982 0.458669 CCACAGTTATACCGACGGCT 59.541 55.000 15.39 4.07 0.00 5.52
2728 4983 1.535437 CCACAGTTATACCGACGGCTC 60.535 57.143 15.39 0.00 0.00 4.70
2730 4985 2.029623 ACAGTTATACCGACGGCTCAT 58.970 47.619 15.39 7.63 0.00 2.90
2731 4986 2.429610 ACAGTTATACCGACGGCTCATT 59.570 45.455 15.39 0.00 0.00 2.57
2732 4987 3.118884 ACAGTTATACCGACGGCTCATTT 60.119 43.478 15.39 0.00 0.00 2.32
2734 4989 5.221382 ACAGTTATACCGACGGCTCATTTAT 60.221 40.000 15.39 5.74 0.00 1.40
2735 4990 5.118664 CAGTTATACCGACGGCTCATTTATG 59.881 44.000 15.39 0.00 0.00 1.90
2736 4991 1.860676 TACCGACGGCTCATTTATGC 58.139 50.000 15.39 0.00 0.00 3.14
2737 4992 0.178068 ACCGACGGCTCATTTATGCT 59.822 50.000 15.39 0.00 0.00 3.79
2738 4993 0.583438 CCGACGGCTCATTTATGCTG 59.417 55.000 0.00 0.00 41.02 4.41
2740 4995 1.258982 CGACGGCTCATTTATGCTGAC 59.741 52.381 0.00 0.00 38.78 3.51
2742 4997 1.134818 ACGGCTCATTTATGCTGACGA 60.135 47.619 14.38 0.00 38.78 4.20
2743 4998 1.258982 CGGCTCATTTATGCTGACGAC 59.741 52.381 0.00 0.00 37.75 4.34
2744 4999 2.555199 GGCTCATTTATGCTGACGACT 58.445 47.619 0.00 0.00 0.00 4.18
2745 5000 2.286294 GGCTCATTTATGCTGACGACTG 59.714 50.000 0.00 0.00 0.00 3.51
2746 5001 2.286294 GCTCATTTATGCTGACGACTGG 59.714 50.000 0.00 0.00 0.00 4.00
2747 5002 3.525537 CTCATTTATGCTGACGACTGGT 58.474 45.455 0.00 0.00 0.00 4.00
2749 5004 2.831685 TTTATGCTGACGACTGGTGT 57.168 45.000 0.00 0.00 0.00 4.16
2750 5005 2.363788 TTATGCTGACGACTGGTGTC 57.636 50.000 0.00 0.00 39.70 3.67
2758 5013 3.876300 GACTGGTGTCGGCATGTC 58.124 61.111 0.00 0.00 33.15 3.06
2759 5014 1.293498 GACTGGTGTCGGCATGTCT 59.707 57.895 11.64 0.00 33.15 3.41
2760 5015 0.737715 GACTGGTGTCGGCATGTCTC 60.738 60.000 11.64 0.00 33.15 3.36
2761 5016 1.448540 CTGGTGTCGGCATGTCTCC 60.449 63.158 0.00 0.00 0.00 3.71
2763 5018 3.188786 GTGTCGGCATGTCTCCGC 61.189 66.667 0.00 2.53 46.05 5.54
2764 5019 4.451150 TGTCGGCATGTCTCCGCC 62.451 66.667 5.46 0.00 46.05 6.13
2766 5021 2.441348 TCGGCATGTCTCCGCCTA 60.441 61.111 5.46 0.00 46.62 3.93
2768 5023 2.423446 GGCATGTCTCCGCCTAGG 59.577 66.667 3.67 3.67 45.29 3.02
2769 5024 2.435693 GGCATGTCTCCGCCTAGGT 61.436 63.158 11.31 0.00 45.29 3.08
2770 5025 1.068250 GCATGTCTCCGCCTAGGTC 59.932 63.158 11.31 1.66 41.99 3.85
2771 5026 1.360551 CATGTCTCCGCCTAGGTCG 59.639 63.158 11.31 14.07 41.99 4.79
2772 5027 1.101635 CATGTCTCCGCCTAGGTCGA 61.102 60.000 22.12 12.13 41.99 4.20
2774 5029 2.513204 TCTCCGCCTAGGTCGACG 60.513 66.667 22.12 12.26 41.99 5.12
2775 5030 3.584052 CTCCGCCTAGGTCGACGG 61.584 72.222 22.12 19.62 46.97 4.79
2779 5034 3.537874 GCCTAGGTCGACGGCCAT 61.538 66.667 22.54 8.45 37.86 4.40
2780 5035 3.090219 GCCTAGGTCGACGGCCATT 62.090 63.158 22.54 2.91 37.86 3.16
2781 5036 1.067582 CCTAGGTCGACGGCCATTC 59.932 63.158 22.54 0.00 0.00 2.67
2782 5037 1.392710 CCTAGGTCGACGGCCATTCT 61.393 60.000 22.54 1.64 0.00 2.40
2783 5038 0.249073 CTAGGTCGACGGCCATTCTG 60.249 60.000 22.54 1.55 0.00 3.02
2784 5039 0.968901 TAGGTCGACGGCCATTCTGT 60.969 55.000 22.54 0.36 36.89 3.41
2785 5040 2.100631 GGTCGACGGCCATTCTGTG 61.101 63.158 15.00 0.00 33.57 3.66
2786 5041 2.434185 TCGACGGCCATTCTGTGC 60.434 61.111 2.24 0.00 33.57 4.57
2787 5042 3.499737 CGACGGCCATTCTGTGCC 61.500 66.667 2.24 0.00 44.41 5.01
2795 5494 2.047274 ATTCTGTGCCGACGGTGG 60.047 61.111 16.73 3.63 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.897401 AGCAAAAGAGAGGCTTGCCC 60.897 55.000 8.17 0.13 45.23 5.36
2 3 1.826385 TAGCAAAAGAGAGGCTTGCC 58.174 50.000 2.97 2.97 45.23 4.52
3 4 3.923017 TTTAGCAAAAGAGAGGCTTGC 57.077 42.857 0.00 0.00 44.61 4.01
24 25 9.733219 CAAAAATGCCAAGAATAAACACATTTT 57.267 25.926 0.00 0.00 43.98 1.82
25 26 7.861872 GCAAAAATGCCAAGAATAAACACATTT 59.138 29.630 0.00 0.00 37.73 2.32
26 27 7.013083 TGCAAAAATGCCAAGAATAAACACATT 59.987 29.630 0.00 0.00 0.00 2.71
27 28 6.485984 TGCAAAAATGCCAAGAATAAACACAT 59.514 30.769 0.00 0.00 0.00 3.21
63 64 1.961394 GTGCCACCTCCTACATATCGA 59.039 52.381 0.00 0.00 0.00 3.59
75 76 1.228552 GTTGGTCCATGTGCCACCT 60.229 57.895 5.13 0.00 34.02 4.00
81 82 0.744414 CCGCCTAGTTGGTCCATGTG 60.744 60.000 0.00 0.00 38.35 3.21
91 96 1.686325 ATCCATCGTGCCGCCTAGTT 61.686 55.000 0.00 0.00 0.00 2.24
166 797 2.396590 AAACAAGACACCTCACACGT 57.603 45.000 0.00 0.00 0.00 4.49
199 840 2.925724 TGGGAAAACAACAGACGACAT 58.074 42.857 0.00 0.00 0.00 3.06
284 930 4.648917 GAGTTCTCTCTAAAAACCGCAC 57.351 45.455 0.00 0.00 37.68 5.34
317 965 8.000780 AGGAAATTAACTGCACTATGATTTCC 57.999 34.615 19.80 19.80 45.64 3.13
428 1359 0.385974 GTGACGTCTGGTGCATTTGC 60.386 55.000 17.92 0.00 42.50 3.68
429 1360 0.943673 TGTGACGTCTGGTGCATTTG 59.056 50.000 17.92 0.00 0.00 2.32
430 1361 1.229428 CTGTGACGTCTGGTGCATTT 58.771 50.000 17.92 0.00 0.00 2.32
432 1363 1.669115 GCTGTGACGTCTGGTGCAT 60.669 57.895 17.92 0.00 0.00 3.96
433 1364 2.280119 GCTGTGACGTCTGGTGCA 60.280 61.111 17.92 7.07 0.00 4.57
435 1366 1.224069 CCTTGCTGTGACGTCTGGTG 61.224 60.000 17.92 5.66 0.00 4.17
438 1391 1.278172 CGTCCTTGCTGTGACGTCTG 61.278 60.000 17.92 8.16 46.83 3.51
444 1397 0.315251 CTGTCTCGTCCTTGCTGTGA 59.685 55.000 0.00 0.00 0.00 3.58
469 1422 3.181497 CCTGTTGTGTCACTTTCCAACTG 60.181 47.826 4.27 4.25 38.35 3.16
493 1446 7.944554 TCCAATGTTTCTTCTCTTGGAATAGTT 59.055 33.333 0.03 0.00 41.68 2.24
536 1491 4.253257 GAGGCGAGCGTACGAGGG 62.253 72.222 21.65 7.49 35.09 4.30
566 1521 2.590821 AGGACCGTGTTATATAGGCGT 58.409 47.619 0.00 0.00 0.00 5.68
569 1524 7.344913 AGATAGGTAGGACCGTGTTATATAGG 58.655 42.308 0.00 0.00 44.90 2.57
577 1532 2.244252 AGGAAGATAGGTAGGACCGTGT 59.756 50.000 0.00 0.00 44.90 4.49
578 1533 2.623889 CAGGAAGATAGGTAGGACCGTG 59.376 54.545 0.00 0.00 44.90 4.94
600 1555 1.269448 CCTGTTTGGTTGGTTCCGATG 59.731 52.381 0.00 0.00 0.00 3.84
610 1566 1.134037 TCTAACCGTGCCTGTTTGGTT 60.134 47.619 0.79 0.79 46.04 3.67
615 1571 1.820519 TCGTATCTAACCGTGCCTGTT 59.179 47.619 0.00 0.00 0.00 3.16
619 1575 1.265095 TCGATCGTATCTAACCGTGCC 59.735 52.381 15.94 0.00 0.00 5.01
636 1592 2.538333 GCGTACGTAGATTTGAGCTCGA 60.538 50.000 17.90 3.88 0.00 4.04
685 2929 2.717639 ATTAGGCAAAGCGAGTCCAT 57.282 45.000 0.00 0.00 0.00 3.41
689 2933 3.265791 CTGAGAATTAGGCAAAGCGAGT 58.734 45.455 0.00 0.00 0.00 4.18
692 2936 2.352960 GACCTGAGAATTAGGCAAAGCG 59.647 50.000 0.00 0.00 38.96 4.68
745 2989 2.954753 GCAAGTCGTCCGGCTGTTG 61.955 63.158 0.00 0.00 0.00 3.33
762 3006 3.741476 CAGGAAGCGTGCCCTTGC 61.741 66.667 0.00 0.00 33.87 4.01
777 3021 0.318445 ACCGACGTCGAGGAAAACAG 60.318 55.000 37.65 19.90 43.02 3.16
781 3025 0.318107 GTTCACCGACGTCGAGGAAA 60.318 55.000 37.65 21.92 43.02 3.13
820 3064 5.071788 GTGTAGGGATTATTGATGGAGGACA 59.928 44.000 0.00 0.00 0.00 4.02
827 3071 3.738982 TGCCGTGTAGGGATTATTGATG 58.261 45.455 0.00 0.00 41.48 3.07
851 3095 2.307309 CGTACATACCATGCCGCCG 61.307 63.158 0.00 0.00 0.00 6.46
902 3146 8.316046 CGACATGCATAAATTCTCAATCAAAAC 58.684 33.333 0.00 0.00 0.00 2.43
960 3206 7.470079 ACGCTAGCTCGAATAAATAATCGATA 58.530 34.615 13.93 0.00 45.90 2.92
990 3236 3.210012 TTCCCCTGCTGCCACTTCC 62.210 63.158 0.00 0.00 0.00 3.46
1140 3387 0.761323 TCACCGGGTTGGACTCAAGA 60.761 55.000 6.32 0.00 42.00 3.02
1143 3390 1.338890 TGTTCACCGGGTTGGACTCA 61.339 55.000 6.32 0.00 42.00 3.41
1304 3551 1.073763 TGTTGTCAATGTAGGCTGCCT 59.926 47.619 26.52 26.52 37.71 4.75
1308 3555 3.508845 ACCTTGTTGTCAATGTAGGCT 57.491 42.857 9.34 0.00 32.34 4.58
1333 3580 6.098679 TGTGCACAAGTAATGGCAATTAATC 58.901 36.000 19.28 0.00 37.10 1.75
1341 3588 3.302365 AACATGTGCACAAGTAATGGC 57.698 42.857 26.33 0.00 0.00 4.40
1350 3597 5.364778 ACTAACAGAACTAACATGTGCACA 58.635 37.500 24.08 24.08 0.00 4.57
1357 3604 7.656137 ACATCGACAAACTAACAGAACTAACAT 59.344 33.333 0.00 0.00 0.00 2.71
1360 3607 8.355169 ACTACATCGACAAACTAACAGAACTAA 58.645 33.333 0.00 0.00 0.00 2.24
1366 3613 6.082338 ACGTACTACATCGACAAACTAACAG 58.918 40.000 0.00 0.00 0.00 3.16
1368 3615 8.606727 ATTACGTACTACATCGACAAACTAAC 57.393 34.615 0.00 0.00 0.00 2.34
1397 3646 0.515127 ACACACACACACACACGTTG 59.485 50.000 0.00 0.00 0.00 4.10
1399 3648 0.601576 ACACACACACACACACACGT 60.602 50.000 0.00 0.00 0.00 4.49
1400 3649 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1403 3652 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1409 3658 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1411 3660 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1415 3664 4.763593 GTGCACACACACACACAC 57.236 55.556 13.17 0.00 46.61 3.82
1431 3680 2.549754 GACTAGCTGCAAACACACATGT 59.450 45.455 1.02 0.00 42.46 3.21
1435 3684 0.110644 GCGACTAGCTGCAAACACAC 60.111 55.000 1.02 0.00 44.04 3.82
1500 3749 0.318699 GCGTTTGCTTTGTCCCTTCC 60.319 55.000 0.00 0.00 38.39 3.46
1535 3784 2.764128 TCAAGGCCCCCTCTAGCG 60.764 66.667 0.00 0.00 30.89 4.26
1644 3893 2.268076 ACCACAAAGCGCCATGGTC 61.268 57.895 14.67 5.80 41.76 4.02
1649 3898 3.215568 CCACACCACAAAGCGCCA 61.216 61.111 2.29 0.00 0.00 5.69
1710 3959 0.667487 CGAGTTCTCCAAAGCGCTCA 60.667 55.000 12.06 0.00 0.00 4.26
1773 4022 2.472488 GGCACGTTTCATCTTTGCAAAG 59.528 45.455 29.53 29.53 34.76 2.77
1800 4049 7.341769 ACTGCTGAGACATCTTAGATTAGAGTT 59.658 37.037 4.93 0.00 31.92 3.01
1856 4105 2.222678 GTCATGACTCCTATGCATTGCG 59.777 50.000 18.83 0.00 0.00 4.85
1865 4114 4.533815 AGTATTCCGTGTCATGACTCCTA 58.466 43.478 25.55 9.62 0.00 2.94
1921 4174 5.764487 TGTCTGAACAATAACATTGTGCA 57.236 34.783 11.32 11.32 35.70 4.57
1923 4176 6.738114 AGGTTGTCTGAACAATAACATTGTG 58.262 36.000 5.36 0.00 46.58 3.33
1925 4178 8.099364 ACTAGGTTGTCTGAACAATAACATTG 57.901 34.615 0.00 0.00 46.58 2.82
1927 4180 9.959721 AATACTAGGTTGTCTGAACAATAACAT 57.040 29.630 0.00 0.00 46.58 2.71
2045 4299 6.451064 ACGGGAGGAATGAAAAATATGTTC 57.549 37.500 0.00 0.00 0.00 3.18
2046 4300 6.850752 AACGGGAGGAATGAAAAATATGTT 57.149 33.333 0.00 0.00 0.00 2.71
2056 4310 3.437213 TCTGAACTAACGGGAGGAATGA 58.563 45.455 0.00 0.00 0.00 2.57
2057 4311 3.887621 TCTGAACTAACGGGAGGAATG 57.112 47.619 0.00 0.00 0.00 2.67
2067 4321 9.052759 TCAGTTACTCCAAAATTCTGAACTAAC 57.947 33.333 0.00 0.00 0.00 2.34
2177 4432 6.136857 AGTGTAGGCTAGGATCAATGTAGAA 58.863 40.000 0.00 0.00 0.00 2.10
2198 4453 1.136984 GACCGCGAGTCCTGTAGTG 59.863 63.158 8.23 0.00 39.84 2.74
2206 4461 1.299468 CAGGCATAGACCGCGAGTC 60.299 63.158 8.23 13.88 46.71 3.36
2210 4465 4.569023 TCGCAGGCATAGACCGCG 62.569 66.667 0.00 0.00 46.62 6.46
2212 4467 2.279517 GGTCGCAGGCATAGACCG 60.280 66.667 9.02 0.00 43.96 4.79
2214 4469 1.878522 CGTGGTCGCAGGCATAGAC 60.879 63.158 0.00 0.00 0.00 2.59
2215 4470 2.494445 CGTGGTCGCAGGCATAGA 59.506 61.111 0.00 0.00 0.00 1.98
2216 4471 2.586079 CCGTGGTCGCAGGCATAG 60.586 66.667 0.00 0.00 35.54 2.23
2217 4472 4.155733 CCCGTGGTCGCAGGCATA 62.156 66.667 0.00 0.00 35.54 3.14
2229 4484 2.278596 CTATGCCGACGACCCGTG 60.279 66.667 0.00 0.00 41.37 4.94
2231 4486 4.944372 GCCTATGCCGACGACCCG 62.944 72.222 0.00 0.00 0.00 5.28
2314 4569 3.480225 GACGGGTCTATGCCGACGG 62.480 68.421 10.29 10.29 34.75 4.79
2315 4570 2.025727 GACGGGTCTATGCCGACG 59.974 66.667 0.00 0.00 34.75 5.12
2318 4573 4.944372 GCCGACGGGTCTATGCCG 62.944 72.222 17.22 0.00 34.97 5.69
2319 4574 4.944372 CGCCGACGGGTCTATGCC 62.944 72.222 17.22 0.00 34.97 4.40
2320 4575 2.728427 CTACGCCGACGGGTCTATGC 62.728 65.000 17.22 0.00 46.04 3.14
2321 4576 1.162181 TCTACGCCGACGGGTCTATG 61.162 60.000 17.22 4.26 46.04 2.23
2324 4579 2.124403 ATCTACGCCGACGGGTCT 60.124 61.111 17.22 0.00 46.04 3.85
2325 4580 2.025727 CATCTACGCCGACGGGTC 59.974 66.667 17.22 0.00 46.04 4.46
2327 4582 2.025727 GACATCTACGCCGACGGG 59.974 66.667 17.22 8.43 46.04 5.28
2328 4583 2.352001 CGACATCTACGCCGACGG 60.352 66.667 10.29 10.29 46.04 4.79
2332 4587 2.352001 CCGACGACATCTACGCCG 60.352 66.667 0.00 0.00 36.52 6.46
2333 4588 2.654404 GCCGACGACATCTACGCC 60.654 66.667 0.00 0.00 0.00 5.68
2334 4589 2.365444 TACGCCGACGACATCTACGC 62.365 60.000 0.00 0.00 43.93 4.42
2335 4590 0.382758 CTACGCCGACGACATCTACG 60.383 60.000 0.00 0.00 43.93 3.51
2336 4591 0.654683 ACTACGCCGACGACATCTAC 59.345 55.000 0.00 0.00 43.93 2.59
2337 4592 0.933097 GACTACGCCGACGACATCTA 59.067 55.000 0.00 0.00 43.93 1.98
2338 4593 0.743701 AGACTACGCCGACGACATCT 60.744 55.000 0.00 0.00 43.93 2.90
2339 4594 0.098376 AAGACTACGCCGACGACATC 59.902 55.000 0.00 0.00 43.93 3.06
2340 4595 0.179171 CAAGACTACGCCGACGACAT 60.179 55.000 0.00 0.00 43.93 3.06
2341 4596 1.208358 CAAGACTACGCCGACGACA 59.792 57.895 0.00 0.00 43.93 4.35
2342 4597 0.792356 GACAAGACTACGCCGACGAC 60.792 60.000 0.00 0.00 43.93 4.34
2343 4598 1.229975 TGACAAGACTACGCCGACGA 61.230 55.000 0.00 0.00 43.93 4.20
2344 4599 4.562199 TTCTGACAAGACTACGCCGACG 62.562 54.545 0.00 0.00 37.48 5.12
2345 4600 0.520404 TCTGACAAGACTACGCCGAC 59.480 55.000 0.00 0.00 0.00 4.79
2346 4601 1.241165 TTCTGACAAGACTACGCCGA 58.759 50.000 0.00 0.00 29.98 5.54
2347 4602 1.986378 CTTTCTGACAAGACTACGCCG 59.014 52.381 0.00 0.00 29.98 6.46
2348 4603 2.987821 GACTTTCTGACAAGACTACGCC 59.012 50.000 6.60 0.00 29.98 5.68
2349 4604 2.657372 CGACTTTCTGACAAGACTACGC 59.343 50.000 6.60 0.00 29.98 4.42
2350 4605 3.235195 CCGACTTTCTGACAAGACTACG 58.765 50.000 6.60 0.00 29.98 3.51
2351 4606 2.987821 GCCGACTTTCTGACAAGACTAC 59.012 50.000 6.60 0.00 29.98 2.73
2352 4607 2.626266 TGCCGACTTTCTGACAAGACTA 59.374 45.455 6.60 0.00 29.98 2.59
2353 4608 1.412710 TGCCGACTTTCTGACAAGACT 59.587 47.619 6.60 0.00 29.98 3.24
2354 4609 1.865865 TGCCGACTTTCTGACAAGAC 58.134 50.000 6.60 1.43 29.98 3.01
2355 4610 2.839486 ATGCCGACTTTCTGACAAGA 57.161 45.000 6.60 0.00 0.00 3.02
2356 4611 3.589988 ACTATGCCGACTTTCTGACAAG 58.410 45.455 0.00 0.00 0.00 3.16
2357 4612 3.678056 ACTATGCCGACTTTCTGACAA 57.322 42.857 0.00 0.00 0.00 3.18
2358 4613 5.507482 GCTATACTATGCCGACTTTCTGACA 60.507 44.000 0.00 0.00 0.00 3.58
2359 4614 4.918583 GCTATACTATGCCGACTTTCTGAC 59.081 45.833 0.00 0.00 0.00 3.51
2360 4615 4.022242 GGCTATACTATGCCGACTTTCTGA 60.022 45.833 0.00 0.00 39.71 3.27
2361 4616 4.238514 GGCTATACTATGCCGACTTTCTG 58.761 47.826 0.00 0.00 39.71 3.02
2362 4617 4.522722 GGCTATACTATGCCGACTTTCT 57.477 45.455 0.00 0.00 39.71 2.52
2370 4625 0.458025 GCCGACGGCTATACTATGCC 60.458 60.000 31.30 0.00 46.69 4.40
2371 4626 3.031660 GCCGACGGCTATACTATGC 57.968 57.895 31.30 0.14 46.69 3.14
2382 4637 0.895530 ATATGTCCCTATGCCGACGG 59.104 55.000 10.29 10.29 0.00 4.79
2383 4638 1.996292 CATATGTCCCTATGCCGACG 58.004 55.000 0.00 0.00 0.00 5.12
2384 4639 1.726853 GCATATGTCCCTATGCCGAC 58.273 55.000 4.29 0.00 45.35 4.79
2389 4644 0.740868 CCGCGGCATATGTCCCTATG 60.741 60.000 14.67 0.00 33.15 2.23
2390 4645 1.596934 CCGCGGCATATGTCCCTAT 59.403 57.895 14.67 0.00 0.00 2.57
2391 4646 3.056458 CCGCGGCATATGTCCCTA 58.944 61.111 14.67 0.00 0.00 3.53
2392 4647 4.626081 GCCGCGGCATATGTCCCT 62.626 66.667 43.55 0.00 41.49 4.20
2394 4649 4.626081 AGGCCGCGGCATATGTCC 62.626 66.667 46.88 29.61 44.11 4.02
2395 4650 3.349006 CAGGCCGCGGCATATGTC 61.349 66.667 46.88 30.34 44.11 3.06
2396 4651 4.935495 CCAGGCCGCGGCATATGT 62.935 66.667 46.88 25.15 44.11 2.29
2420 4675 2.601562 GGCTAAACTATGCCGACGG 58.398 57.895 10.29 10.29 39.71 4.79
2425 4680 1.496403 GCCGACGGCTAAACTATGCC 61.496 60.000 31.30 0.00 46.69 4.40
2426 4681 1.932277 GCCGACGGCTAAACTATGC 59.068 57.895 31.30 0.14 46.69 3.14
2437 4692 2.051345 GCAAAACACTGCCGACGG 60.051 61.111 10.29 10.29 36.25 4.79
2438 4693 2.425124 CGCAAAACACTGCCGACG 60.425 61.111 0.00 0.00 39.26 5.12
2439 4694 1.368850 GACGCAAAACACTGCCGAC 60.369 57.895 0.00 0.00 39.26 4.79
2440 4695 2.876879 CGACGCAAAACACTGCCGA 61.877 57.895 0.00 0.00 39.26 5.54
2441 4696 2.425124 CGACGCAAAACACTGCCG 60.425 61.111 0.00 0.00 39.26 5.69
2442 4697 1.368850 GACGACGCAAAACACTGCC 60.369 57.895 0.00 0.00 39.26 4.85
2443 4698 0.247894 TTGACGACGCAAAACACTGC 60.248 50.000 0.00 0.00 39.04 4.40
2444 4699 2.166741 TTTGACGACGCAAAACACTG 57.833 45.000 12.77 0.00 35.03 3.66
2445 4700 2.780993 CTTTTGACGACGCAAAACACT 58.219 42.857 19.24 0.00 41.38 3.55
2446 4701 1.251762 GCTTTTGACGACGCAAAACAC 59.748 47.619 19.24 13.52 41.38 3.32
2447 4702 1.540407 GCTTTTGACGACGCAAAACA 58.460 45.000 19.24 7.22 41.38 2.83
2448 4703 0.492737 CGCTTTTGACGACGCAAAAC 59.507 50.000 19.24 15.87 41.38 2.43
2449 4704 2.848213 CGCTTTTGACGACGCAAAA 58.152 47.368 20.77 20.77 43.31 2.44
2450 4705 4.580580 CGCTTTTGACGACGCAAA 57.419 50.000 11.61 11.61 36.08 3.68
2454 4709 1.154836 GTCAGCGCTTTTGACGACG 60.155 57.895 7.50 0.00 36.01 5.12
2455 4710 4.800166 GTCAGCGCTTTTGACGAC 57.200 55.556 7.50 7.47 36.01 4.34
2458 4713 1.783416 CGATTCGTCAGCGCTTTTGAC 60.783 52.381 7.50 13.11 41.14 3.18
2459 4714 0.438445 CGATTCGTCAGCGCTTTTGA 59.562 50.000 7.50 0.00 38.14 2.69
2460 4715 0.163788 ACGATTCGTCAGCGCTTTTG 59.836 50.000 7.50 0.00 33.69 2.44
2461 4716 0.163788 CACGATTCGTCAGCGCTTTT 59.836 50.000 7.50 0.00 38.32 2.27
2462 4717 1.781555 CACGATTCGTCAGCGCTTT 59.218 52.632 7.50 0.00 38.32 3.51
2463 4718 2.730672 GCACGATTCGTCAGCGCTT 61.731 57.895 7.50 0.00 38.32 4.68
2464 4719 3.181967 GCACGATTCGTCAGCGCT 61.182 61.111 2.64 2.64 38.32 5.92
2465 4720 3.010585 TTGCACGATTCGTCAGCGC 62.011 57.895 9.11 10.31 38.32 5.92
2466 4721 1.225475 GTTGCACGATTCGTCAGCG 60.225 57.895 9.11 0.00 38.32 5.18
2467 4722 1.225475 CGTTGCACGATTCGTCAGC 60.225 57.895 9.11 11.41 46.05 4.26
2468 4723 1.225475 GCGTTGCACGATTCGTCAG 60.225 57.895 9.11 0.10 46.05 3.51
2469 4724 2.663478 GGCGTTGCACGATTCGTCA 61.663 57.895 9.11 7.87 46.05 4.35
2470 4725 2.095843 GGCGTTGCACGATTCGTC 59.904 61.111 9.11 5.33 46.05 4.20
2471 4726 2.663520 TGGCGTTGCACGATTCGT 60.664 55.556 5.75 5.75 46.05 3.85
2472 4727 2.202171 GTGGCGTTGCACGATTCG 60.202 61.111 11.94 4.14 46.05 3.34
2473 4728 2.202171 CGTGGCGTTGCACGATTC 60.202 61.111 7.35 2.79 46.05 2.52
2474 4729 2.970324 ACGTGGCGTTGCACGATT 60.970 55.556 18.11 0.00 46.05 3.34
2475 4730 3.711842 CACGTGGCGTTGCACGAT 61.712 61.111 18.11 2.30 46.05 3.73
2486 4741 1.815421 GCATACCTCTGCCACGTGG 60.815 63.158 30.66 30.66 36.10 4.94
2487 4742 1.086067 CAGCATACCTCTGCCACGTG 61.086 60.000 9.08 9.08 43.33 4.49
2488 4743 1.219124 CAGCATACCTCTGCCACGT 59.781 57.895 0.00 0.00 43.33 4.49
2489 4744 0.807667 GTCAGCATACCTCTGCCACG 60.808 60.000 0.00 0.00 43.33 4.94
2490 4745 0.807667 CGTCAGCATACCTCTGCCAC 60.808 60.000 0.00 0.00 43.33 5.01
2491 4746 1.517361 CGTCAGCATACCTCTGCCA 59.483 57.895 0.00 0.00 43.33 4.92
2492 4747 1.227380 CCGTCAGCATACCTCTGCC 60.227 63.158 0.00 0.00 43.33 4.85
2493 4748 1.884926 GCCGTCAGCATACCTCTGC 60.885 63.158 0.00 0.00 42.97 4.26
2494 4749 4.427394 GCCGTCAGCATACCTCTG 57.573 61.111 0.00 0.00 42.97 3.35
2516 4771 4.251760 GCAGAGATATGCCGACGG 57.748 61.111 10.29 10.29 40.43 4.79
2522 4777 2.609825 CCACGTGGCAGAGATATGC 58.390 57.895 24.02 0.00 45.74 3.14
2535 4790 3.548484 TACCACGGGTTGCCACGT 61.548 61.111 0.72 0.00 45.25 4.49
2536 4791 3.045492 GTACCACGGGTTGCCACG 61.045 66.667 0.72 0.00 37.09 4.94
2537 4792 1.670083 GAGTACCACGGGTTGCCAC 60.670 63.158 0.72 0.00 37.09 5.01
2538 4793 2.745037 GAGTACCACGGGTTGCCA 59.255 61.111 0.72 0.00 37.09 4.92
2539 4794 2.046604 GGAGTACCACGGGTTGCC 60.047 66.667 0.72 0.00 37.09 4.52
2540 4795 1.375523 CAGGAGTACCACGGGTTGC 60.376 63.158 0.72 0.00 37.09 4.17
2541 4796 1.295423 CCAGGAGTACCACGGGTTG 59.705 63.158 0.72 0.00 37.09 3.77
2542 4797 1.152183 ACCAGGAGTACCACGGGTT 60.152 57.895 0.00 0.00 37.09 4.11
2543 4798 1.911766 CACCAGGAGTACCACGGGT 60.912 63.158 0.00 3.86 40.16 5.28
2544 4799 2.656069 CCACCAGGAGTACCACGGG 61.656 68.421 0.00 2.71 38.94 5.28
2545 4800 2.978824 CCACCAGGAGTACCACGG 59.021 66.667 0.00 0.00 38.94 4.94
2546 4801 2.264794 GCCACCAGGAGTACCACG 59.735 66.667 0.00 0.00 38.94 4.94
2547 4802 1.296715 CTGCCACCAGGAGTACCAC 59.703 63.158 0.00 0.00 38.94 4.16
2548 4803 3.805928 CTGCCACCAGGAGTACCA 58.194 61.111 0.00 0.00 38.94 3.25
2556 4811 4.547859 GCATAGTCCTGCCACCAG 57.452 61.111 0.00 0.00 36.10 4.00
2562 4817 2.279517 CCGTCGGCATAGTCCTGC 60.280 66.667 0.00 0.00 41.53 4.85
2589 4844 3.569049 ATCCGCGGCGTAGGTATGC 62.569 63.158 23.51 0.00 37.49 3.14
2590 4845 1.443872 GATCCGCGGCGTAGGTATG 60.444 63.158 23.51 3.83 0.00 2.39
2591 4846 2.960170 GATCCGCGGCGTAGGTAT 59.040 61.111 23.51 6.61 0.00 2.73
2592 4847 3.653009 CGATCCGCGGCGTAGGTA 61.653 66.667 23.51 0.16 36.03 3.08
2603 4858 3.716539 ATGCCACGTCACCGATCCG 62.717 63.158 0.00 0.00 37.88 4.18
2604 4859 2.173669 CATGCCACGTCACCGATCC 61.174 63.158 0.00 0.00 37.88 3.36
2605 4860 2.813179 GCATGCCACGTCACCGATC 61.813 63.158 6.36 0.00 37.88 3.69
2606 4861 2.819595 GCATGCCACGTCACCGAT 60.820 61.111 6.36 0.00 37.88 4.18
2610 4865 4.088762 CACCGCATGCCACGTCAC 62.089 66.667 13.15 0.00 0.00 3.67
2611 4866 2.232298 TATCACCGCATGCCACGTCA 62.232 55.000 13.15 0.00 0.00 4.35
2612 4867 0.880278 ATATCACCGCATGCCACGTC 60.880 55.000 13.15 0.00 0.00 4.34
2613 4868 1.146041 ATATCACCGCATGCCACGT 59.854 52.632 13.15 2.74 0.00 4.49
2614 4869 1.570967 CATATCACCGCATGCCACG 59.429 57.895 13.15 2.02 0.00 4.94
2615 4870 1.283793 GCATATCACCGCATGCCAC 59.716 57.895 13.15 0.00 41.36 5.01
2616 4871 3.748623 GCATATCACCGCATGCCA 58.251 55.556 13.15 0.00 41.36 4.92
2618 4873 2.557805 CGGCATATCACCGCATGC 59.442 61.111 7.91 7.91 44.90 4.06
2650 4905 1.153706 AAACCTATGCCGACGGTCG 60.154 57.895 22.88 22.88 40.07 4.79
2651 4906 0.108520 TCAAACCTATGCCGACGGTC 60.109 55.000 16.73 8.54 0.00 4.79
2652 4907 0.390735 GTCAAACCTATGCCGACGGT 60.391 55.000 16.73 0.00 0.00 4.83
2653 4908 1.418342 CGTCAAACCTATGCCGACGG 61.418 60.000 10.29 10.29 44.21 4.79
2654 4909 1.418342 CCGTCAAACCTATGCCGACG 61.418 60.000 0.00 0.00 46.71 5.12
2655 4910 1.702491 GCCGTCAAACCTATGCCGAC 61.702 60.000 0.00 0.00 0.00 4.79
2656 4911 1.448893 GCCGTCAAACCTATGCCGA 60.449 57.895 0.00 0.00 0.00 5.54
2657 4912 2.808958 CGCCGTCAAACCTATGCCG 61.809 63.158 0.00 0.00 0.00 5.69
2658 4913 1.303091 AACGCCGTCAAACCTATGCC 61.303 55.000 0.00 0.00 0.00 4.40
2659 4914 1.326548 CTAACGCCGTCAAACCTATGC 59.673 52.381 0.00 0.00 0.00 3.14
2660 4915 1.326548 GCTAACGCCGTCAAACCTATG 59.673 52.381 0.00 0.00 0.00 2.23
2661 4916 1.648504 GCTAACGCCGTCAAACCTAT 58.351 50.000 0.00 0.00 0.00 2.57
2662 4917 3.126729 GCTAACGCCGTCAAACCTA 57.873 52.632 0.00 0.00 0.00 3.08
2663 4918 3.961729 GCTAACGCCGTCAAACCT 58.038 55.556 0.00 0.00 0.00 3.50
2674 4929 1.585521 CCGTGACTAGCGGCTAACG 60.586 63.158 20.24 20.24 42.82 3.18
2675 4930 4.396854 CCGTGACTAGCGGCTAAC 57.603 61.111 11.39 5.76 42.82 2.34
2698 4953 2.234913 ATAACTGTGGGCCCGACGTC 62.235 60.000 19.37 5.18 0.00 4.34
2699 4954 0.971959 TATAACTGTGGGCCCGACGT 60.972 55.000 19.37 10.78 0.00 4.34
2700 4955 0.529119 GTATAACTGTGGGCCCGACG 60.529 60.000 19.37 10.04 0.00 5.12
2701 4956 0.179065 GGTATAACTGTGGGCCCGAC 60.179 60.000 19.37 16.90 0.00 4.79
2702 4957 1.678598 CGGTATAACTGTGGGCCCGA 61.679 60.000 19.37 4.99 36.12 5.14
2703 4958 1.227438 CGGTATAACTGTGGGCCCG 60.227 63.158 19.37 5.25 0.00 6.13
2704 4959 0.179065 GTCGGTATAACTGTGGGCCC 60.179 60.000 17.59 17.59 0.00 5.80
2705 4960 0.529119 CGTCGGTATAACTGTGGGCC 60.529 60.000 0.00 0.00 0.00 5.80
2707 4962 0.529119 GCCGTCGGTATAACTGTGGG 60.529 60.000 13.94 0.00 0.00 4.61
2708 4963 0.458669 AGCCGTCGGTATAACTGTGG 59.541 55.000 13.94 0.00 0.00 4.17
2709 4964 1.133598 TGAGCCGTCGGTATAACTGTG 59.866 52.381 13.94 0.00 0.00 3.66
2710 4965 1.466856 TGAGCCGTCGGTATAACTGT 58.533 50.000 13.94 0.00 0.00 3.55
2711 4966 2.795175 ATGAGCCGTCGGTATAACTG 57.205 50.000 13.94 0.00 0.00 3.16
2712 4967 3.814005 AAATGAGCCGTCGGTATAACT 57.186 42.857 13.94 0.00 0.00 2.24
2714 4969 3.991773 GCATAAATGAGCCGTCGGTATAA 59.008 43.478 13.94 0.00 0.00 0.98
2715 4970 3.257375 AGCATAAATGAGCCGTCGGTATA 59.743 43.478 13.94 0.00 0.00 1.47
2717 4972 1.411246 AGCATAAATGAGCCGTCGGTA 59.589 47.619 13.94 0.00 0.00 4.02
2718 4973 0.178068 AGCATAAATGAGCCGTCGGT 59.822 50.000 13.94 0.00 0.00 4.69
2719 4974 0.583438 CAGCATAAATGAGCCGTCGG 59.417 55.000 6.99 6.99 0.00 4.79
2721 4976 1.258982 CGTCAGCATAAATGAGCCGTC 59.741 52.381 0.00 0.00 0.00 4.79
2722 4977 1.134818 TCGTCAGCATAAATGAGCCGT 60.135 47.619 0.00 0.00 0.00 5.68
2723 4978 1.258982 GTCGTCAGCATAAATGAGCCG 59.741 52.381 0.00 0.00 0.00 5.52
2724 4979 2.286294 CAGTCGTCAGCATAAATGAGCC 59.714 50.000 0.00 0.00 0.00 4.70
2725 4980 2.286294 CCAGTCGTCAGCATAAATGAGC 59.714 50.000 0.00 0.00 0.00 4.26
2726 4981 3.308053 CACCAGTCGTCAGCATAAATGAG 59.692 47.826 0.00 0.00 0.00 2.90
2727 4982 3.261580 CACCAGTCGTCAGCATAAATGA 58.738 45.455 0.00 0.00 0.00 2.57
2728 4983 3.002791 ACACCAGTCGTCAGCATAAATG 58.997 45.455 0.00 0.00 0.00 2.32
2730 4985 2.683968 GACACCAGTCGTCAGCATAAA 58.316 47.619 0.00 0.00 34.60 1.40
2731 4986 2.363788 GACACCAGTCGTCAGCATAA 57.636 50.000 0.00 0.00 34.60 1.90
2742 4997 1.293498 GAGACATGCCGACACCAGT 59.707 57.895 0.00 0.00 0.00 4.00
2743 4998 1.448540 GGAGACATGCCGACACCAG 60.449 63.158 0.00 0.00 0.00 4.00
2744 4999 2.662596 GGAGACATGCCGACACCA 59.337 61.111 0.00 0.00 0.00 4.17
2752 5007 1.068250 GACCTAGGCGGAGACATGC 59.932 63.158 9.30 0.00 39.87 4.06
2755 5010 1.748122 GTCGACCTAGGCGGAGACA 60.748 63.158 20.56 3.61 39.87 3.41
2756 5011 2.821688 CGTCGACCTAGGCGGAGAC 61.822 68.421 20.56 16.87 39.11 3.36
2763 5018 1.067582 GAATGGCCGTCGACCTAGG 59.932 63.158 10.58 7.41 0.00 3.02
2764 5019 0.249073 CAGAATGGCCGTCGACCTAG 60.249 60.000 10.58 0.00 0.00 3.02
2766 5021 2.283529 ACAGAATGGCCGTCGACCT 61.284 57.895 10.58 0.00 43.62 3.85
2768 5023 2.740714 GCACAGAATGGCCGTCGAC 61.741 63.158 5.18 5.18 43.62 4.20
2769 5024 2.434185 GCACAGAATGGCCGTCGA 60.434 61.111 0.00 0.00 43.62 4.20
2776 5031 2.047274 ACCGTCGGCACAGAATGG 60.047 61.111 12.28 0.00 43.62 3.16
2777 5032 2.390599 CCACCGTCGGCACAGAATG 61.391 63.158 12.28 0.00 46.00 2.67
2778 5033 2.047274 CCACCGTCGGCACAGAAT 60.047 61.111 12.28 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.