Multiple sequence alignment - TraesCS6A01G389300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G389300 chr6A 100.000 6443 0 0 1 6443 604882269 604888711 0.000000e+00 11899
1 TraesCS6A01G389300 chr6A 88.158 456 29 11 1132 1583 616824974 616825408 2.660000e-143 520
2 TraesCS6A01G389300 chr6D 97.049 1830 48 4 3686 5514 458760109 458758285 0.000000e+00 3075
3 TraesCS6A01G389300 chr6D 88.575 1838 111 45 1130 2933 458762728 458760956 0.000000e+00 2139
4 TraesCS6A01G389300 chr6D 86.569 953 78 24 5513 6443 458758101 458757177 0.000000e+00 1005
5 TraesCS6A01G389300 chr6D 90.574 732 45 3 2979 3687 458760951 458760221 0.000000e+00 948
6 TraesCS6A01G389300 chr6D 89.062 256 17 7 291 540 458764226 458763976 2.260000e-79 307
7 TraesCS6A01G389300 chr6D 93.671 79 5 0 861 939 458763042 458762964 1.130000e-22 119
8 TraesCS6A01G389300 chr6B 91.896 1925 103 15 1803 3687 697756848 697754937 0.000000e+00 2641
9 TraesCS6A01G389300 chr6B 95.077 1300 43 10 4226 5509 697754121 697752827 0.000000e+00 2026
10 TraesCS6A01G389300 chr6B 97.963 540 10 1 3686 4224 697754825 697754286 0.000000e+00 935
11 TraesCS6A01G389300 chr6B 85.405 555 43 8 5898 6443 697751972 697751447 5.680000e-150 542
12 TraesCS6A01G389300 chr6B 86.602 515 22 19 1130 1630 697757510 697757029 5.720000e-145 525
13 TraesCS6A01G389300 chr6B 89.503 362 23 6 5538 5898 697752354 697752007 1.650000e-120 444
14 TraesCS6A01G389300 chr6B 78.209 748 80 39 262 946 697758403 697757676 1.010000e-107 401
15 TraesCS6A01G389300 chr2B 86.325 585 64 7 1808 2382 128054555 128053977 1.970000e-174 623
16 TraesCS6A01G389300 chr7A 88.596 456 27 11 1132 1583 103125673 103126107 1.230000e-146 531
17 TraesCS6A01G389300 chr1A 88.571 455 27 11 1133 1583 574279312 574279745 4.420000e-146 529
18 TraesCS6A01G389300 chr1A 87.719 456 31 11 1132 1583 592563370 592563804 5.760000e-140 508
19 TraesCS6A01G389300 chr1A 78.483 567 67 32 1 519 389228639 389229198 2.900000e-83 320
20 TraesCS6A01G389300 chrUn 88.377 456 28 11 1132 1583 341585037 341585471 5.720000e-145 525
21 TraesCS6A01G389300 chrUn 86.760 287 19 11 1304 1586 453616145 453615874 1.050000e-77 302
22 TraesCS6A01G389300 chr4A 88.377 456 28 11 1132 1583 714758925 714759359 5.720000e-145 525
23 TraesCS6A01G389300 chr3A 88.428 458 24 13 1132 1583 739547519 739547953 5.720000e-145 525
24 TraesCS6A01G389300 chr3B 87.582 459 32 11 1132 1586 262587919 262587482 5.760000e-140 508
25 TraesCS6A01G389300 chr3B 87.500 456 32 12 1132 1583 263252366 263252800 2.680000e-138 503
26 TraesCS6A01G389300 chr4B 83.333 456 38 17 1137 1586 410812350 410811927 2.820000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G389300 chr6A 604882269 604888711 6442 False 11899.000000 11899 100.000000 1 6443 1 chr6A.!!$F1 6442
1 TraesCS6A01G389300 chr6D 458757177 458764226 7049 True 1265.500000 3075 90.916667 291 6443 6 chr6D.!!$R1 6152
2 TraesCS6A01G389300 chr6B 697751447 697758403 6956 True 1073.428571 2641 89.236429 262 6443 7 chr6B.!!$R1 6181
3 TraesCS6A01G389300 chr2B 128053977 128054555 578 True 623.000000 623 86.325000 1808 2382 1 chr2B.!!$R1 574
4 TraesCS6A01G389300 chr1A 389228639 389229198 559 False 320.000000 320 78.483000 1 519 1 chr1A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 338 0.109781 CCGTACAAACATGTGCAGCC 60.110 55.000 0.00 0.00 0.00 4.85 F
1632 2537 0.027716 CTCGTCGAGGTACGTCCATG 59.972 60.000 14.68 3.21 43.31 3.66 F
1935 2872 0.033601 TGTCTGTGGCTGGTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43 F
2051 3004 0.179100 AATCATCTGCTGACGGACGG 60.179 55.000 0.00 0.00 36.48 4.79 F
2327 3284 0.469917 ACTGGGTTATGCGCTGCTAT 59.530 50.000 9.73 0.00 33.37 2.97 F
2435 3392 1.153349 GTCTCCCTCACCAATCGCC 60.153 63.158 0.00 0.00 0.00 5.54 F
3746 4839 1.342174 CTGCAGGGCTTGTGACAAAAT 59.658 47.619 5.57 0.00 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 3079 0.107703 CCTGGCCGAGCTTGATGTAA 60.108 55.000 1.22 0.00 0.00 2.41 R
3244 4205 0.473755 AGGTGAGTGTGCAATGGACA 59.526 50.000 2.74 2.74 0.00 4.02 R
3725 4818 0.395586 TTTGTCACAAGCCCTGCAGT 60.396 50.000 13.81 0.00 0.00 4.40 R
3943 5036 0.249657 CTAGATCCGCTGCCAACTCC 60.250 60.000 0.00 0.00 0.00 3.85 R
4307 5564 4.101430 AGCCAAAACCACAAATCAGTGATT 59.899 37.500 12.75 12.75 42.05 2.57 R
4398 5655 1.403679 TCAAAGACACCTGTTTTGCCG 59.596 47.619 7.59 0.00 33.10 5.69 R
5501 6774 0.042581 TCTATGTGAGACTGCCCCCA 59.957 55.000 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.875803 CATTGTAATTAACATCTGCAATGCTTT 58.124 29.630 6.82 0.00 38.10 3.51
44 45 9.791801 TGCAATGCTTTACTATCATTAATCCTA 57.208 29.630 6.82 0.00 0.00 2.94
55 56 5.296151 TCATTAATCCTAGGCTGGTCTTG 57.704 43.478 2.96 0.00 0.00 3.02
65 76 1.135721 GGCTGGTCTTGCATTCCATTC 59.864 52.381 5.67 2.45 0.00 2.67
91 102 0.948678 GTCAACGGCTGTAAAGGCAA 59.051 50.000 7.33 0.00 0.00 4.52
94 105 0.309612 AACGGCTGTAAAGGCAAACG 59.690 50.000 7.33 0.00 0.00 3.60
99 110 1.068610 GCTGTAAAGGCAAACGCATGA 60.069 47.619 0.00 0.00 0.00 3.07
101 112 2.979813 CTGTAAAGGCAAACGCATGAAC 59.020 45.455 0.00 0.00 0.00 3.18
108 119 2.598589 GCAAACGCATGAACACATGAT 58.401 42.857 13.30 0.00 42.56 2.45
155 170 4.415881 TGTTGTTCTCAGCAGGAAGTAA 57.584 40.909 0.00 0.00 31.54 2.24
157 172 4.756642 TGTTGTTCTCAGCAGGAAGTAATG 59.243 41.667 0.00 0.00 31.54 1.90
162 177 6.321181 TGTTCTCAGCAGGAAGTAATGTTTTT 59.679 34.615 0.00 0.00 0.00 1.94
193 211 1.938585 TACTCTTGGGCACTACTGCT 58.061 50.000 0.00 0.00 43.66 4.24
199 217 0.541392 TGGGCACTACTGCTATGTGG 59.459 55.000 0.00 0.00 43.66 4.17
205 223 4.250464 GCACTACTGCTATGTGGTTTGTA 58.750 43.478 0.00 0.00 40.63 2.41
208 226 5.351465 CACTACTGCTATGTGGTTTGTAAGG 59.649 44.000 0.00 0.00 29.14 2.69
210 228 3.081061 CTGCTATGTGGTTTGTAAGGCA 58.919 45.455 0.00 0.00 0.00 4.75
214 232 2.666272 TGTGGTTTGTAAGGCATGGA 57.334 45.000 0.00 0.00 0.00 3.41
216 234 2.158534 TGTGGTTTGTAAGGCATGGACT 60.159 45.455 0.00 0.00 0.00 3.85
252 286 7.667043 TTTGACATCATCTTGTGTACCTTAC 57.333 36.000 0.00 0.00 0.00 2.34
254 288 7.004555 TGACATCATCTTGTGTACCTTACTT 57.995 36.000 0.00 0.00 0.00 2.24
255 289 6.873605 TGACATCATCTTGTGTACCTTACTTG 59.126 38.462 0.00 0.00 0.00 3.16
256 290 6.173339 ACATCATCTTGTGTACCTTACTTGG 58.827 40.000 0.00 0.00 0.00 3.61
258 292 6.921486 TCATCTTGTGTACCTTACTTGGTA 57.079 37.500 0.00 0.00 41.22 3.25
259 293 7.490657 TCATCTTGTGTACCTTACTTGGTAT 57.509 36.000 0.00 0.00 43.54 2.73
260 294 8.598202 TCATCTTGTGTACCTTACTTGGTATA 57.402 34.615 0.00 0.00 43.54 1.47
303 338 0.109781 CCGTACAAACATGTGCAGCC 60.110 55.000 0.00 0.00 0.00 4.85
400 439 3.067461 TGCAAAAACACCTTGAAGCGTAT 59.933 39.130 0.00 0.00 0.00 3.06
401 440 4.276183 TGCAAAAACACCTTGAAGCGTATA 59.724 37.500 0.00 0.00 0.00 1.47
409 448 2.259618 CTTGAAGCGTATACGTGTGCT 58.740 47.619 25.04 11.67 42.22 4.40
433 482 2.671963 GTTCCAGAACACGGGGGC 60.672 66.667 5.66 0.00 40.84 5.80
493 550 3.271142 CCGCGGCGGTAAATAACTA 57.729 52.632 32.14 0.00 42.73 2.24
494 551 0.854705 CCGCGGCGGTAAATAACTAC 59.145 55.000 32.14 0.00 42.73 2.73
541 615 0.179134 GTAGCCGCACGATCTTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
543 617 1.446099 GCCGCACGATCTTCTGTCA 60.446 57.895 0.00 0.00 0.00 3.58
545 619 1.203928 CCGCACGATCTTCTGTCATC 58.796 55.000 0.00 0.00 0.00 2.92
547 621 1.469767 CGCACGATCTTCTGTCATCCA 60.470 52.381 0.00 0.00 0.00 3.41
569 643 6.205853 TCCATGTAAAATCACCTGTAACACAC 59.794 38.462 0.00 0.00 0.00 3.82
570 644 5.660629 TGTAAAATCACCTGTAACACACG 57.339 39.130 0.00 0.00 0.00 4.49
595 1241 3.607078 GCTGTGTTGGAGACGAAATGAAC 60.607 47.826 0.00 0.00 0.00 3.18
618 1264 7.778470 ACGAAGTTTAGCTAGTACGTACTAT 57.222 36.000 30.29 20.99 37.78 2.12
621 1272 9.574401 CGAAGTTTAGCTAGTACGTACTATAAC 57.426 37.037 30.29 26.71 38.06 1.89
650 1301 1.654220 GCAAATCGCTGTGTGGTGT 59.346 52.632 0.00 0.00 37.77 4.16
655 1306 3.952675 CGCTGTGTGGTGTGGTGC 61.953 66.667 0.00 0.00 0.00 5.01
659 1310 1.717791 CTGTGTGGTGTGGTGCTGTG 61.718 60.000 0.00 0.00 0.00 3.66
660 1311 1.748879 GTGTGGTGTGGTGCTGTGT 60.749 57.895 0.00 0.00 0.00 3.72
661 1312 1.001517 TGTGGTGTGGTGCTGTGTT 60.002 52.632 0.00 0.00 0.00 3.32
662 1313 1.311651 TGTGGTGTGGTGCTGTGTTG 61.312 55.000 0.00 0.00 0.00 3.33
665 1316 1.340114 TGGTGTGGTGCTGTGTTGTTA 60.340 47.619 0.00 0.00 0.00 2.41
675 1326 4.155826 GTGCTGTGTTGTTAGATTATGGCA 59.844 41.667 0.00 0.00 0.00 4.92
676 1327 4.395854 TGCTGTGTTGTTAGATTATGGCAG 59.604 41.667 0.00 0.00 0.00 4.85
682 1333 5.647658 TGTTGTTAGATTATGGCAGTGGAAG 59.352 40.000 0.00 0.00 0.00 3.46
684 1335 5.674525 TGTTAGATTATGGCAGTGGAAGAG 58.325 41.667 0.00 0.00 0.00 2.85
688 1339 4.472833 AGATTATGGCAGTGGAAGAGAAGT 59.527 41.667 0.00 0.00 0.00 3.01
692 1343 1.346068 GGCAGTGGAAGAGAAGTGACT 59.654 52.381 0.00 0.00 0.00 3.41
693 1344 2.563179 GGCAGTGGAAGAGAAGTGACTA 59.437 50.000 0.00 0.00 0.00 2.59
751 1429 1.840650 AGCCTCTGTGTGGAGCAGT 60.841 57.895 0.00 0.00 35.60 4.40
752 1430 1.670406 GCCTCTGTGTGGAGCAGTG 60.670 63.158 0.00 0.00 35.60 3.66
757 1435 0.892358 CTGTGTGGAGCAGTGGCATT 60.892 55.000 0.00 0.00 44.61 3.56
769 1447 1.001764 TGGCATTGTCCTCTGCTGG 60.002 57.895 0.00 0.00 38.45 4.85
770 1448 1.001641 GGCATTGTCCTCTGCTGGT 60.002 57.895 0.00 0.00 38.45 4.00
772 1450 1.930908 GCATTGTCCTCTGCTGGTGC 61.931 60.000 0.00 0.00 35.49 5.01
773 1451 0.322277 CATTGTCCTCTGCTGGTGCT 60.322 55.000 0.00 0.00 40.48 4.40
774 1452 0.403271 ATTGTCCTCTGCTGGTGCTT 59.597 50.000 0.00 0.00 40.48 3.91
775 1453 0.535780 TTGTCCTCTGCTGGTGCTTG 60.536 55.000 0.00 0.00 40.48 4.01
776 1454 1.673665 GTCCTCTGCTGGTGCTTGG 60.674 63.158 0.00 0.00 40.48 3.61
777 1455 3.060615 CCTCTGCTGGTGCTTGGC 61.061 66.667 0.00 0.00 40.48 4.52
778 1456 2.033757 CTCTGCTGGTGCTTGGCT 59.966 61.111 0.00 0.00 40.48 4.75
779 1457 1.602888 CTCTGCTGGTGCTTGGCTT 60.603 57.895 0.00 0.00 40.48 4.35
784 1467 2.443577 TGGTGCTTGGCTTTGGCA 60.444 55.556 0.00 0.00 40.87 4.92
798 1481 2.594592 GGCAGGCGAGTTGTGGTT 60.595 61.111 0.00 0.00 0.00 3.67
811 1494 2.856494 TGGTTGGGTGCCTGCCTA 60.856 61.111 0.00 0.00 0.00 3.93
901 1650 2.358737 GGACGGGACAGCCACAAG 60.359 66.667 0.00 0.00 35.15 3.16
964 1729 4.323477 CTCCCCGTCACCCGCAAA 62.323 66.667 0.00 0.00 34.38 3.68
976 1741 1.172180 CCCGCAAAGGCACAAAGAGA 61.172 55.000 0.00 0.00 41.24 3.10
982 1747 0.695347 AAGGCACAAAGAGAGGAGGG 59.305 55.000 0.00 0.00 0.00 4.30
988 1753 0.985490 CAAAGAGAGGAGGGGAGGGG 60.985 65.000 0.00 0.00 0.00 4.79
995 1760 2.041405 GAGGGGAGGGGACTGGAG 60.041 72.222 0.00 0.00 44.43 3.86
996 1761 3.700350 AGGGGAGGGGACTGGAGG 61.700 72.222 0.00 0.00 44.43 4.30
997 1762 3.695825 GGGGAGGGGACTGGAGGA 61.696 72.222 0.00 0.00 44.43 3.71
998 1763 2.041405 GGGAGGGGACTGGAGGAG 60.041 72.222 0.00 0.00 44.43 3.69
999 1764 2.766229 GGAGGGGACTGGAGGAGC 60.766 72.222 0.00 0.00 44.43 4.70
1000 1765 3.151022 GAGGGGACTGGAGGAGCG 61.151 72.222 0.00 0.00 44.43 5.03
1001 1766 3.663815 GAGGGGACTGGAGGAGCGA 62.664 68.421 0.00 0.00 44.43 4.93
1002 1767 3.462678 GGGGACTGGAGGAGCGAC 61.463 72.222 0.00 0.00 0.00 5.19
1003 1768 3.827898 GGGACTGGAGGAGCGACG 61.828 72.222 0.00 0.00 0.00 5.12
1004 1769 2.750637 GGACTGGAGGAGCGACGA 60.751 66.667 0.00 0.00 0.00 4.20
1007 1772 4.180946 CTGGAGGAGCGACGACCG 62.181 72.222 0.00 0.00 42.21 4.79
1025 1790 3.669344 CCTGCCGCGCTTTTTCCA 61.669 61.111 5.56 0.00 0.00 3.53
1026 1791 2.429069 CTGCCGCGCTTTTTCCAC 60.429 61.111 5.56 0.00 0.00 4.02
1027 1792 3.896863 CTGCCGCGCTTTTTCCACC 62.897 63.158 5.56 0.00 0.00 4.61
1030 1795 4.025401 CGCGCTTTTTCCACCGCT 62.025 61.111 5.56 0.00 43.84 5.52
1031 1796 2.126850 GCGCTTTTTCCACCGCTC 60.127 61.111 0.00 0.00 42.83 5.03
1032 1797 2.561373 CGCTTTTTCCACCGCTCC 59.439 61.111 0.00 0.00 0.00 4.70
1033 1798 2.258013 CGCTTTTTCCACCGCTCCA 61.258 57.895 0.00 0.00 0.00 3.86
1046 1811 0.108329 CGCTCCATCGGTTACCACTT 60.108 55.000 1.13 0.00 0.00 3.16
1047 1812 1.135527 CGCTCCATCGGTTACCACTTA 59.864 52.381 1.13 0.00 0.00 2.24
1049 1814 2.740904 GCTCCATCGGTTACCACTTACC 60.741 54.545 1.13 0.00 0.00 2.85
1050 1815 2.764572 CTCCATCGGTTACCACTTACCT 59.235 50.000 1.13 0.00 32.08 3.08
1051 1816 2.762327 TCCATCGGTTACCACTTACCTC 59.238 50.000 1.13 0.00 32.08 3.85
1052 1817 2.159000 CCATCGGTTACCACTTACCTCC 60.159 54.545 1.13 0.00 32.08 4.30
1053 1818 2.307496 TCGGTTACCACTTACCTCCA 57.693 50.000 1.13 0.00 32.08 3.86
1054 1819 1.895131 TCGGTTACCACTTACCTCCAC 59.105 52.381 1.13 0.00 32.08 4.02
1055 1820 1.897802 CGGTTACCACTTACCTCCACT 59.102 52.381 1.13 0.00 32.08 4.00
1056 1821 2.353406 CGGTTACCACTTACCTCCACTG 60.353 54.545 1.13 0.00 32.08 3.66
1057 1822 2.614734 GGTTACCACTTACCTCCACTGC 60.615 54.545 0.00 0.00 0.00 4.40
1058 1823 2.302157 GTTACCACTTACCTCCACTGCT 59.698 50.000 0.00 0.00 0.00 4.24
1063 1828 3.093057 CACTTACCTCCACTGCTACTCT 58.907 50.000 0.00 0.00 0.00 3.24
1066 1831 2.137810 ACCTCCACTGCTACTCTCTC 57.862 55.000 0.00 0.00 0.00 3.20
1075 1840 1.063567 TGCTACTCTCTCCCCTCTTCC 60.064 57.143 0.00 0.00 0.00 3.46
1082 1847 2.657459 TCTCTCCCCTCTTCCTTCTCTT 59.343 50.000 0.00 0.00 0.00 2.85
1091 1921 3.622630 TCTTCCTTCTCTTCTACCTCCG 58.377 50.000 0.00 0.00 0.00 4.63
1107 1937 4.477975 CGCGTCTCGGGGTCTCAC 62.478 72.222 0.00 0.00 36.19 3.51
1349 2246 1.686800 GTCCACCGTAAGCCCCCTA 60.687 63.158 0.00 0.00 0.00 3.53
1351 2248 1.688187 CCACCGTAAGCCCCCTACT 60.688 63.158 0.00 0.00 0.00 2.57
1352 2249 1.520666 CACCGTAAGCCCCCTACTG 59.479 63.158 0.00 0.00 0.00 2.74
1353 2250 2.364780 ACCGTAAGCCCCCTACTGC 61.365 63.158 0.00 0.00 0.00 4.40
1355 2252 2.363975 CGTAAGCCCCCTACTGCCA 61.364 63.158 0.00 0.00 0.00 4.92
1356 2253 1.223763 GTAAGCCCCCTACTGCCAC 59.776 63.158 0.00 0.00 0.00 5.01
1357 2254 1.229690 TAAGCCCCCTACTGCCACA 60.230 57.895 0.00 0.00 0.00 4.17
1358 2255 1.271840 TAAGCCCCCTACTGCCACAG 61.272 60.000 0.00 0.00 37.52 3.66
1359 2256 4.115199 GCCCCCTACTGCCACAGG 62.115 72.222 0.00 0.00 35.51 4.00
1362 2259 2.990479 CCCTACTGCCACAGGGTC 59.010 66.667 5.62 0.00 45.70 4.46
1363 2260 1.613630 CCCTACTGCCACAGGGTCT 60.614 63.158 5.62 0.00 45.70 3.85
1364 2261 1.617947 CCCTACTGCCACAGGGTCTC 61.618 65.000 5.62 0.00 45.70 3.36
1365 2262 1.617947 CCTACTGCCACAGGGTCTCC 61.618 65.000 0.00 0.00 35.51 3.71
1366 2263 0.616111 CTACTGCCACAGGGTCTCCT 60.616 60.000 0.00 0.00 46.26 3.69
1367 2264 0.614979 TACTGCCACAGGGTCTCCTC 60.615 60.000 0.00 0.00 42.67 3.71
1368 2265 1.915266 CTGCCACAGGGTCTCCTCA 60.915 63.158 0.00 0.00 42.67 3.86
1369 2266 1.897225 CTGCCACAGGGTCTCCTCAG 61.897 65.000 0.00 0.00 42.67 3.35
1370 2267 2.985456 CCACAGGGTCTCCTCAGC 59.015 66.667 0.00 0.00 42.67 4.26
1371 2268 2.664081 CCACAGGGTCTCCTCAGCC 61.664 68.421 0.00 0.00 42.67 4.85
1372 2269 2.681778 ACAGGGTCTCCTCAGCCG 60.682 66.667 0.00 0.00 42.67 5.52
1382 2279 2.184322 CTCAGCCGCGCCTTCTTA 59.816 61.111 0.00 0.00 0.00 2.10
1387 2284 1.003866 CAGCCGCGCCTTCTTAATTAC 60.004 52.381 0.00 0.00 0.00 1.89
1389 2286 1.669265 GCCGCGCCTTCTTAATTACTT 59.331 47.619 0.00 0.00 0.00 2.24
1391 2288 3.302935 GCCGCGCCTTCTTAATTACTTAC 60.303 47.826 0.00 0.00 0.00 2.34
1392 2289 4.117685 CCGCGCCTTCTTAATTACTTACT 58.882 43.478 0.00 0.00 0.00 2.24
1393 2290 4.569564 CCGCGCCTTCTTAATTACTTACTT 59.430 41.667 0.00 0.00 0.00 2.24
1395 2292 5.519206 CGCGCCTTCTTAATTACTTACTTCT 59.481 40.000 0.00 0.00 0.00 2.85
1421 2324 1.064654 CGATGATCTCGCTGACTGACA 59.935 52.381 0.00 0.00 41.14 3.58
1422 2325 2.287487 CGATGATCTCGCTGACTGACAT 60.287 50.000 0.00 0.00 41.14 3.06
1423 2326 2.573941 TGATCTCGCTGACTGACATG 57.426 50.000 0.00 0.00 0.00 3.21
1424 2327 1.135721 TGATCTCGCTGACTGACATGG 59.864 52.381 0.00 0.00 0.00 3.66
1425 2328 0.179089 ATCTCGCTGACTGACATGGC 60.179 55.000 0.00 0.00 0.00 4.40
1426 2329 1.079612 CTCGCTGACTGACATGGCA 60.080 57.895 0.00 0.00 0.00 4.92
1427 2330 1.357258 CTCGCTGACTGACATGGCAC 61.357 60.000 0.00 0.00 0.00 5.01
1428 2331 2.733671 CGCTGACTGACATGGCACG 61.734 63.158 0.00 0.00 0.00 5.34
1429 2332 3.031964 GCTGACTGACATGGCACGC 62.032 63.158 0.00 0.00 0.00 5.34
1430 2333 2.733671 CTGACTGACATGGCACGCG 61.734 63.158 3.53 3.53 0.00 6.01
1433 2336 4.156622 CTGACATGGCACGCGCTG 62.157 66.667 5.73 5.02 38.60 5.18
1450 2353 0.735632 CTGCGTTCTCTGCTCTGGAC 60.736 60.000 0.00 0.00 0.00 4.02
1455 2358 0.539669 TTCTCTGCTCTGGACGGACA 60.540 55.000 0.00 0.00 0.00 4.02
1456 2359 0.323816 TCTCTGCTCTGGACGGACAT 60.324 55.000 0.00 0.00 0.00 3.06
1457 2360 0.179116 CTCTGCTCTGGACGGACATG 60.179 60.000 0.00 0.00 0.00 3.21
1458 2361 1.153489 CTGCTCTGGACGGACATGG 60.153 63.158 0.00 0.00 0.00 3.66
1459 2362 1.607801 CTGCTCTGGACGGACATGGA 61.608 60.000 0.00 0.00 0.00 3.41
1460 2363 0.977627 TGCTCTGGACGGACATGGAT 60.978 55.000 0.00 0.00 0.00 3.41
1597 2502 1.952133 CGACCAGTTCGCCGACAAA 60.952 57.895 0.00 0.00 41.87 2.83
1630 2535 1.004560 ACTCGTCGAGGTACGTCCA 60.005 57.895 25.25 0.00 43.31 4.02
1631 2536 0.392193 ACTCGTCGAGGTACGTCCAT 60.392 55.000 25.25 0.00 43.31 3.41
1632 2537 0.027716 CTCGTCGAGGTACGTCCATG 59.972 60.000 14.68 3.21 43.31 3.66
1634 2539 1.226888 GTCGAGGTACGTCCATGCC 60.227 63.158 9.86 0.00 43.13 4.40
1636 2541 2.717044 CGAGGTACGTCCATGCCCA 61.717 63.158 9.86 0.00 39.02 5.36
1637 2542 1.830145 GAGGTACGTCCATGCCCAT 59.170 57.895 4.15 0.00 39.02 4.00
1638 2543 0.532862 GAGGTACGTCCATGCCCATG 60.533 60.000 4.15 1.28 39.02 3.66
1639 2544 1.223487 GGTACGTCCATGCCCATGT 59.777 57.895 7.42 0.00 37.11 3.21
1640 2545 1.095228 GGTACGTCCATGCCCATGTG 61.095 60.000 7.42 0.18 37.11 3.21
1641 2546 0.107897 GTACGTCCATGCCCATGTGA 60.108 55.000 7.42 2.33 37.11 3.58
1643 2548 2.114670 CGTCCATGCCCATGTGACC 61.115 63.158 16.84 6.71 36.51 4.02
1644 2549 1.001020 GTCCATGCCCATGTGACCA 60.001 57.895 13.98 0.00 37.11 4.02
1645 2550 0.396139 GTCCATGCCCATGTGACCAT 60.396 55.000 13.98 0.00 37.11 3.55
1646 2551 0.396001 TCCATGCCCATGTGACCATG 60.396 55.000 7.42 0.00 46.65 3.66
1647 2552 0.685131 CCATGCCCATGTGACCATGT 60.685 55.000 7.42 0.00 45.83 3.21
1648 2553 0.742505 CATGCCCATGTGACCATGTC 59.257 55.000 0.13 0.00 45.83 3.06
1649 2554 0.396139 ATGCCCATGTGACCATGTCC 60.396 55.000 2.38 0.00 45.83 4.02
1650 2555 1.001020 GCCCATGTGACCATGTCCA 60.001 57.895 2.38 0.00 45.83 4.02
1651 2556 0.396139 GCCCATGTGACCATGTCCAT 60.396 55.000 2.38 0.00 45.83 3.41
1667 2572 2.209809 ATCCCCACCTCCACCACA 59.790 61.111 0.00 0.00 0.00 4.17
1680 2585 2.174639 TCCACCACAAATCACTTCCACT 59.825 45.455 0.00 0.00 0.00 4.00
1682 2587 2.554032 CACCACAAATCACTTCCACTCC 59.446 50.000 0.00 0.00 0.00 3.85
1684 2589 2.554032 CCACAAATCACTTCCACTCCAC 59.446 50.000 0.00 0.00 0.00 4.02
1685 2590 3.213506 CACAAATCACTTCCACTCCACA 58.786 45.455 0.00 0.00 0.00 4.17
1686 2591 3.251729 CACAAATCACTTCCACTCCACAG 59.748 47.826 0.00 0.00 0.00 3.66
1688 2593 4.136796 CAAATCACTTCCACTCCACAGAA 58.863 43.478 0.00 0.00 0.00 3.02
1689 2594 4.647564 AATCACTTCCACTCCACAGAAT 57.352 40.909 0.00 0.00 0.00 2.40
1690 2595 4.647564 ATCACTTCCACTCCACAGAATT 57.352 40.909 0.00 0.00 0.00 2.17
1691 2596 4.008074 TCACTTCCACTCCACAGAATTC 57.992 45.455 0.00 0.00 0.00 2.17
1692 2597 3.077359 CACTTCCACTCCACAGAATTCC 58.923 50.000 0.65 0.00 0.00 3.01
1693 2598 2.711009 ACTTCCACTCCACAGAATTCCA 59.289 45.455 0.65 0.00 0.00 3.53
1695 2600 4.202609 ACTTCCACTCCACAGAATTCCATT 60.203 41.667 0.65 0.00 0.00 3.16
1697 2602 3.019564 CCACTCCACAGAATTCCATTCC 58.980 50.000 0.65 0.00 40.13 3.01
1699 2604 2.292267 CTCCACAGAATTCCATTCCCG 58.708 52.381 0.65 0.00 40.13 5.14
1700 2605 0.740737 CCACAGAATTCCATTCCCGC 59.259 55.000 0.65 0.00 40.13 6.13
1709 2614 1.507140 TCCATTCCCGCATAGTTCCT 58.493 50.000 0.00 0.00 0.00 3.36
1710 2615 1.843851 TCCATTCCCGCATAGTTCCTT 59.156 47.619 0.00 0.00 0.00 3.36
1713 2618 3.278574 CATTCCCGCATAGTTCCTTTCA 58.721 45.455 0.00 0.00 0.00 2.69
1715 2620 1.626321 TCCCGCATAGTTCCTTTCACA 59.374 47.619 0.00 0.00 0.00 3.58
1720 2625 4.155826 CCGCATAGTTCCTTTCACAAATCA 59.844 41.667 0.00 0.00 0.00 2.57
1724 2629 6.516527 GCATAGTTCCTTTCACAAATCACCAA 60.517 38.462 0.00 0.00 0.00 3.67
1754 2659 3.866883 ATGAATTGGGCAGTTTAACCG 57.133 42.857 0.00 0.00 0.00 4.44
1755 2660 1.889829 TGAATTGGGCAGTTTAACCGG 59.110 47.619 0.00 0.00 0.00 5.28
1758 2663 1.175983 TTGGGCAGTTTAACCGGCTG 61.176 55.000 0.00 0.54 0.00 4.85
1763 2668 1.079503 CAGTTTAACCGGCTGCTCTC 58.920 55.000 0.00 0.00 0.00 3.20
1766 2671 1.206371 GTTTAACCGGCTGCTCTCCTA 59.794 52.381 0.00 0.00 0.00 2.94
1770 2675 1.789523 ACCGGCTGCTCTCCTATTAA 58.210 50.000 0.00 0.00 0.00 1.40
1935 2872 0.033601 TGTCTGTGGCTGGTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
1985 2922 2.678336 CCGACAAAATCAAGGAGGTAGC 59.322 50.000 0.00 0.00 0.00 3.58
1987 2924 3.596214 GACAAAATCAAGGAGGTAGCGA 58.404 45.455 0.00 0.00 0.00 4.93
1989 2926 4.192317 ACAAAATCAAGGAGGTAGCGATC 58.808 43.478 0.00 0.00 0.00 3.69
1990 2927 2.802787 AATCAAGGAGGTAGCGATCG 57.197 50.000 11.69 11.69 0.00 3.69
1991 2928 1.982660 ATCAAGGAGGTAGCGATCGA 58.017 50.000 21.57 0.00 0.00 3.59
1992 2929 1.982660 TCAAGGAGGTAGCGATCGAT 58.017 50.000 21.57 16.78 0.00 3.59
1993 2930 2.307768 TCAAGGAGGTAGCGATCGATT 58.692 47.619 21.57 8.62 0.00 3.34
1994 2931 2.034685 TCAAGGAGGTAGCGATCGATTG 59.965 50.000 21.57 8.40 0.00 2.67
1995 2932 0.315568 AGGAGGTAGCGATCGATTGC 59.684 55.000 27.17 27.17 37.46 3.56
1996 2933 0.667792 GGAGGTAGCGATCGATTGCC 60.668 60.000 29.89 18.06 37.94 4.52
2002 2955 0.745845 AGCGATCGATTGCCAAAGCT 60.746 50.000 29.89 11.07 40.80 3.74
2003 2956 0.316524 GCGATCGATTGCCAAAGCTC 60.317 55.000 24.69 0.00 40.80 4.09
2015 2968 3.321682 TGCCAAAGCTCTGCTGTTATTTT 59.678 39.130 0.00 0.00 39.62 1.82
2051 3004 0.179100 AATCATCTGCTGACGGACGG 60.179 55.000 0.00 0.00 36.48 4.79
2065 3018 1.000506 CGGACGGACCTTCTCTTTTGA 59.999 52.381 0.00 0.00 36.31 2.69
2081 3034 4.932799 TCTTTTGAACAGAACGAAGTGACA 59.067 37.500 0.00 0.00 45.00 3.58
2115 3068 1.096416 GAGGGAGATCGTCACGTCTT 58.904 55.000 0.00 0.00 31.54 3.01
2126 3079 3.570212 ACGTCTTTGGGCCCTGCT 61.570 61.111 25.70 0.00 0.00 4.24
2189 3142 2.685017 TCCCCTGCAGCGATGACT 60.685 61.111 8.66 0.00 0.00 3.41
2218 3171 3.931468 CAGAAGCTATGTGACAAGGTGAG 59.069 47.826 0.00 0.00 0.00 3.51
2289 3246 1.340889 GGCATGCTGTTTGAAGTCCAA 59.659 47.619 18.92 0.00 0.00 3.53
2300 3257 5.008613 TGTTTGAAGTCCAATGTAGCTCAAC 59.991 40.000 0.00 0.00 34.23 3.18
2327 3284 0.469917 ACTGGGTTATGCGCTGCTAT 59.530 50.000 9.73 0.00 33.37 2.97
2411 3368 3.496692 GGCCATGGCAAGACATATACTCA 60.497 47.826 36.56 0.00 44.11 3.41
2432 3389 2.569404 AGAACTGTCTCCCTCACCAATC 59.431 50.000 0.00 0.00 0.00 2.67
2435 3392 1.153349 GTCTCCCTCACCAATCGCC 60.153 63.158 0.00 0.00 0.00 5.54
2706 3663 6.241207 TCTTCTTGATGAAAAATGACGGAC 57.759 37.500 0.00 0.00 33.79 4.79
2736 3693 8.256611 TGTCTTTATTAGCTCACACTGAAATC 57.743 34.615 0.00 0.00 0.00 2.17
2744 3701 3.727079 GCTCACACTGAAATCGCTGAATG 60.727 47.826 0.00 0.00 0.00 2.67
2754 3711 2.338015 CGCTGAATGCTGCCAGGTT 61.338 57.895 0.00 0.00 40.11 3.50
2977 3934 5.047802 GGAGAGTTGGAATTTTGCATTCAGA 60.048 40.000 1.26 0.00 0.00 3.27
2998 3955 7.049754 TCAGAATTTGCTACAGATATGCTTGA 58.950 34.615 0.00 0.00 0.00 3.02
3133 4094 4.090761 AGATGGTGAGAAGCTTTCACAA 57.909 40.909 27.64 22.42 45.23 3.33
3221 4182 7.342194 TCGTTTTTCTTCTTCTTTGATGTACG 58.658 34.615 0.00 0.00 0.00 3.67
3327 4288 8.287439 TCTCAAAGAAGTTTTTGGTCATGTTA 57.713 30.769 0.00 0.00 38.33 2.41
3579 4559 3.375642 CAGTATGATGCCGTGTACTCAG 58.624 50.000 0.00 0.00 39.69 3.35
3612 4592 6.212791 TCTCACCCTGCTTTACTAATTAGTGT 59.787 38.462 25.27 10.93 37.10 3.55
3630 4610 7.728847 TTAGTGTGTCGTACAGTAGACTAAA 57.271 36.000 9.07 0.00 43.96 1.85
3638 4618 8.733458 TGTCGTACAGTAGACTAAACATAACAT 58.267 33.333 9.97 0.00 38.16 2.71
3669 4649 5.180492 ACCATTGAAGCTTTTCATTTGCATG 59.820 36.000 0.00 0.00 0.00 4.06
3694 4787 5.878116 TGTCAGCCTGTTTGTATAATACACC 59.122 40.000 0.00 0.00 38.63 4.16
3746 4839 1.342174 CTGCAGGGCTTGTGACAAAAT 59.658 47.619 5.57 0.00 0.00 1.82
3943 5036 6.961554 GTGGTGCGAAGAATATTAACTTTCAG 59.038 38.462 0.00 0.00 0.00 3.02
4172 5266 4.517453 TGTTTCTATGTTTTCCAAGGACCG 59.483 41.667 0.00 0.00 0.00 4.79
4255 5512 8.850454 TTAAAACATTCCTTCTTCAGTTTTCG 57.150 30.769 0.00 0.00 39.20 3.46
4307 5564 7.757941 TTGTGATGTTGATATGAGTTTTGGA 57.242 32.000 0.00 0.00 0.00 3.53
4398 5655 4.331717 AGTGCCTTGCGTTACACAATATAC 59.668 41.667 0.00 0.00 35.47 1.47
4440 5697 1.728971 GCAGAGAGGTTCATTGACGTG 59.271 52.381 0.00 0.00 0.00 4.49
4575 5832 0.391597 CTGCATTCCCAATGGCCATC 59.608 55.000 21.08 4.07 39.31 3.51
4608 5865 2.764314 CCCAATCAAAGCTCGGGCG 61.764 63.158 0.00 0.00 44.37 6.13
4732 5989 0.535780 CCTTTGCACTCAGTGGAGCA 60.536 55.000 7.00 0.00 45.42 4.26
4764 6021 6.657541 TGAATGGTGGAAATGTACCTTTAGAC 59.342 38.462 0.00 0.00 37.84 2.59
4785 6042 2.223340 CCATTCGGTCAAGTGCTTATGC 60.223 50.000 0.00 0.00 40.20 3.14
4856 6113 2.680913 CGCGGTTTCAAGGGAGCAG 61.681 63.158 0.00 0.00 0.00 4.24
4880 6137 6.865205 AGTTGCTACAAATTGCTTCATCTTTC 59.135 34.615 0.13 0.00 0.00 2.62
4979 6236 5.884792 GGAAGACAGGATCATCTTGAACAAT 59.115 40.000 3.29 0.00 35.29 2.71
5063 6321 6.633500 TGCTTGCTAAACTGTTATCACTTT 57.367 33.333 0.00 0.00 0.00 2.66
5121 6382 9.708222 GAATGTTACTGATGTTGATACACATTC 57.292 33.333 0.00 0.00 37.52 2.67
5278 6543 3.989817 GGAATCATTTTTGTGAAGCGCTT 59.010 39.130 25.35 25.35 0.00 4.68
5287 6552 6.713792 TTTTGTGAAGCGCTTTTAGTTTTT 57.286 29.167 25.84 0.00 0.00 1.94
5288 6553 5.694674 TTGTGAAGCGCTTTTAGTTTTTG 57.305 34.783 25.84 0.00 0.00 2.44
5290 6555 5.164954 TGTGAAGCGCTTTTAGTTTTTGTT 58.835 33.333 25.84 0.00 0.00 2.83
5291 6556 5.635700 TGTGAAGCGCTTTTAGTTTTTGTTT 59.364 32.000 25.84 0.00 0.00 2.83
5292 6557 6.146347 TGTGAAGCGCTTTTAGTTTTTGTTTT 59.854 30.769 25.84 0.00 0.00 2.43
5293 6558 6.676995 GTGAAGCGCTTTTAGTTTTTGTTTTC 59.323 34.615 25.84 5.85 0.00 2.29
5460 6731 3.986277 CAGCAATTCTGGCTTTTCTTGT 58.014 40.909 0.00 0.00 40.23 3.16
5501 6774 6.072286 GCATGGACATAGCAAACATATAGCTT 60.072 38.462 0.00 0.00 39.68 3.74
5506 6779 2.949447 AGCAAACATATAGCTTGGGGG 58.051 47.619 0.00 0.00 34.37 5.40
5507 6780 1.341209 GCAAACATATAGCTTGGGGGC 59.659 52.381 0.00 0.00 0.00 5.80
5509 6782 2.624838 CAAACATATAGCTTGGGGGCAG 59.375 50.000 0.00 0.00 34.17 4.85
5510 6783 1.522900 ACATATAGCTTGGGGGCAGT 58.477 50.000 0.00 0.00 34.17 4.40
5511 6784 1.421646 ACATATAGCTTGGGGGCAGTC 59.578 52.381 0.00 0.00 34.17 3.51
5517 6976 1.687612 CTTGGGGGCAGTCTCACAT 59.312 57.895 0.00 0.00 0.00 3.21
5644 7362 1.865865 TCAGTCAAGTCGCAAAGTCC 58.134 50.000 0.00 0.00 0.00 3.85
5647 7365 2.032549 CAGTCAAGTCGCAAAGTCCTTG 60.033 50.000 0.00 0.00 38.15 3.61
5686 7404 6.314896 AGCAAGCTTATCTAACTTGTCATCAC 59.685 38.462 0.00 0.00 42.20 3.06
5690 7408 9.890629 AAGCTTATCTAACTTGTCATCACAATA 57.109 29.630 0.00 0.00 41.82 1.90
5722 7440 7.524294 AGTGCAAACTCTGTACAAAAATTTG 57.476 32.000 13.33 13.33 42.69 2.32
5745 7463 1.483827 GTAACTAGTAGGTGTGCCCCC 59.516 57.143 0.00 0.00 34.57 5.40
5817 7535 9.969001 AGCTAATATTCCTGTACCAAAGTAAAA 57.031 29.630 0.00 0.00 0.00 1.52
5831 7549 8.578448 ACCAAAGTAAAACCAACAGTAAACTA 57.422 30.769 0.00 0.00 0.00 2.24
5850 7568 2.861147 ACTAAGTCAAGGACAAGGGC 57.139 50.000 0.00 0.00 34.60 5.19
5855 7573 1.228552 TCAAGGACAAGGGCAAGGC 60.229 57.895 0.00 0.00 0.00 4.35
5876 7594 3.565902 GCAGAAGAAAACTGTAGCCTGTT 59.434 43.478 0.00 0.00 37.64 3.16
5922 7675 6.328672 AGAGCAGAGTGGGATTATCAACTTAT 59.671 38.462 0.00 0.00 0.00 1.73
5947 7700 1.916181 AGCTGTAGCCACTACCCATTT 59.084 47.619 0.00 0.00 43.38 2.32
5966 7724 5.105997 CCATTTCTTCCTCTTTAAGCTGGTG 60.106 44.000 0.00 1.06 0.00 4.17
5987 7745 2.203001 TACATGGTGCCGGCATCG 60.203 61.111 35.23 22.73 0.00 3.84
5988 7746 2.642996 CTACATGGTGCCGGCATCGA 62.643 60.000 35.23 22.69 39.00 3.59
5989 7747 2.038814 TACATGGTGCCGGCATCGAT 62.039 55.000 35.23 23.91 39.00 3.59
5990 7748 2.281070 ATGGTGCCGGCATCGATC 60.281 61.111 35.23 19.50 39.00 3.69
6008 7766 2.105006 TCTTCAGATGTTGCCTCTGC 57.895 50.000 0.00 0.00 39.98 4.26
6015 7773 0.324943 ATGTTGCCTCTGCCGTAACT 59.675 50.000 0.00 0.00 36.33 2.24
6060 7818 1.867919 CTCTTCGTCACCTCCAGCGT 61.868 60.000 0.00 0.00 0.00 5.07
6070 7828 1.739562 CTCCAGCGTTCTGTGCTCC 60.740 63.158 0.00 0.00 41.72 4.70
6092 7850 1.000283 ACTTCTCTGTCAGCCGTTGAG 60.000 52.381 0.00 0.00 36.21 3.02
6171 7929 3.102515 GCTGCATGCAACAGACAAG 57.897 52.632 22.88 8.40 42.31 3.16
6172 7930 0.313043 GCTGCATGCAACAGACAAGT 59.687 50.000 22.88 0.00 42.31 3.16
6173 7931 1.269413 GCTGCATGCAACAGACAAGTT 60.269 47.619 22.88 0.00 42.31 2.66
6174 7932 2.030893 GCTGCATGCAACAGACAAGTTA 60.031 45.455 22.88 0.00 42.31 2.24
6177 7935 5.550232 TGCATGCAACAGACAAGTTATAG 57.450 39.130 20.30 0.00 0.00 1.31
6218 7980 2.729156 GCTGCTTTGTCTACCGAAATGC 60.729 50.000 0.00 0.00 0.00 3.56
6224 7986 3.394674 TGTCTACCGAAATGCTGTTCA 57.605 42.857 0.00 0.00 0.00 3.18
6288 8051 1.557269 GCCTCCTCAGCCTCCTTCAA 61.557 60.000 0.00 0.00 0.00 2.69
6292 8055 0.179062 CCTCAGCCTCCTTCAATCGG 60.179 60.000 0.00 0.00 0.00 4.18
6297 8065 2.168521 CAGCCTCCTTCAATCGGACTAA 59.831 50.000 0.00 0.00 0.00 2.24
6311 8079 2.007608 GGACTAACAATTCGCCAGGAC 58.992 52.381 0.00 0.00 0.00 3.85
6370 8138 9.727627 CCATCAAGAATATACTTTTCTTCAAGC 57.272 33.333 0.00 0.00 40.53 4.01
6394 8162 6.293298 GCTCAGCATATTGTACCAAGATTCTG 60.293 42.308 0.00 5.32 0.00 3.02
6400 8168 9.236006 GCATATTGTACCAAGATTCTGGAATAT 57.764 33.333 8.56 5.87 38.96 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.578310 AATGATAGTAAAGCATTGCAGATGT 57.422 32.000 11.91 0.00 31.55 3.06
17 18 8.790718 AGGATTAATGATAGTAAAGCATTGCAG 58.209 33.333 11.91 0.00 34.41 4.41
28 29 7.479579 AGACCAGCCTAGGATTAATGATAGTA 58.520 38.462 14.75 0.00 0.00 1.82
44 45 0.333993 ATGGAATGCAAGACCAGCCT 59.666 50.000 13.58 0.00 37.12 4.58
55 56 2.923121 TGACAGGCTAGAATGGAATGC 58.077 47.619 0.00 0.00 0.00 3.56
83 94 2.359214 TGTGTTCATGCGTTTGCCTTTA 59.641 40.909 0.00 0.00 41.78 1.85
99 110 7.690228 GCATAATTTTGCATCAATCATGTGTT 58.310 30.769 14.99 0.00 42.31 3.32
126 137 6.472016 TCCTGCTGAGAACAACATAAATGTA 58.528 36.000 0.00 0.00 40.80 2.29
134 145 4.415881 TTACTTCCTGCTGAGAACAACA 57.584 40.909 0.00 0.00 0.00 3.33
135 146 4.757149 ACATTACTTCCTGCTGAGAACAAC 59.243 41.667 0.00 0.00 0.00 3.32
173 191 2.990066 GCAGTAGTGCCCAAGAGTAT 57.010 50.000 11.74 0.00 44.72 2.12
193 211 4.013728 GTCCATGCCTTACAAACCACATA 58.986 43.478 0.00 0.00 0.00 2.29
222 240 7.704472 GGTACACAAGATGATGTCAAAACAAAA 59.296 33.333 0.00 0.00 39.30 2.44
224 242 6.545666 AGGTACACAAGATGATGTCAAAACAA 59.454 34.615 0.00 0.00 39.30 2.83
225 243 6.061441 AGGTACACAAGATGATGTCAAAACA 58.939 36.000 0.00 0.00 40.38 2.83
226 244 6.560253 AGGTACACAAGATGATGTCAAAAC 57.440 37.500 0.00 0.00 0.00 2.43
228 246 7.450074 AGTAAGGTACACAAGATGATGTCAAA 58.550 34.615 0.00 0.00 0.00 2.69
230 248 6.605471 AGTAAGGTACACAAGATGATGTCA 57.395 37.500 0.00 0.00 0.00 3.58
231 249 6.313905 CCAAGTAAGGTACACAAGATGATGTC 59.686 42.308 0.00 0.00 0.00 3.06
232 250 6.173339 CCAAGTAAGGTACACAAGATGATGT 58.827 40.000 0.00 0.00 0.00 3.06
233 251 6.173339 ACCAAGTAAGGTACACAAGATGATG 58.827 40.000 0.00 0.00 40.98 3.07
234 252 6.374417 ACCAAGTAAGGTACACAAGATGAT 57.626 37.500 0.00 0.00 40.98 2.45
235 253 5.818678 ACCAAGTAAGGTACACAAGATGA 57.181 39.130 0.00 0.00 40.98 2.92
238 256 9.705103 ACTATATACCAAGTAAGGTACACAAGA 57.295 33.333 0.00 0.00 46.29 3.02
242 276 9.129532 ACAGACTATATACCAAGTAAGGTACAC 57.870 37.037 0.00 0.00 46.29 2.90
260 294 9.751542 CGGAAATAATCAGTTTCTACAGACTAT 57.248 33.333 0.00 0.00 36.18 2.12
269 303 8.385898 TGTTTGTACGGAAATAATCAGTTTCT 57.614 30.769 0.00 0.00 37.62 2.52
278 312 5.690997 TGCACATGTTTGTACGGAAATAA 57.309 34.783 0.00 0.00 33.76 1.40
303 338 3.965539 CTTGCGCCACTCCTCCAGG 62.966 68.421 4.18 0.00 0.00 4.45
390 425 2.357327 AGCACACGTATACGCTTCAA 57.643 45.000 24.64 0.00 44.43 2.69
400 439 1.411394 GAACGCTTGTAGCACACGTA 58.589 50.000 0.00 0.00 42.58 3.57
401 440 1.219522 GGAACGCTTGTAGCACACGT 61.220 55.000 0.00 0.00 42.58 4.49
409 448 1.493772 CGTGTTCTGGAACGCTTGTA 58.506 50.000 20.00 0.00 46.44 2.41
433 482 3.190874 GAGAAGAAGAATACCAGTGCCG 58.809 50.000 0.00 0.00 0.00 5.69
541 615 7.120579 GTGTTACAGGTGATTTTACATGGATGA 59.879 37.037 0.00 0.00 36.72 2.92
543 617 6.945435 TGTGTTACAGGTGATTTTACATGGAT 59.055 34.615 0.00 0.00 36.72 3.41
545 619 6.378582 GTGTGTTACAGGTGATTTTACATGG 58.621 40.000 0.00 0.00 36.72 3.66
547 621 5.334569 GCGTGTGTTACAGGTGATTTTACAT 60.335 40.000 3.96 0.00 36.45 2.29
569 643 2.661566 CGTCTCCAACACAGCAGCG 61.662 63.158 0.00 0.00 0.00 5.18
570 644 0.880278 TTCGTCTCCAACACAGCAGC 60.880 55.000 0.00 0.00 0.00 5.25
595 1241 9.574401 GTTATAGTACGTACTAGCTAAACTTCG 57.426 37.037 32.35 0.00 41.62 3.79
608 1254 7.756722 TGCCTTCTTTTCTGTTATAGTACGTAC 59.243 37.037 18.10 18.10 0.00 3.67
609 1255 7.829725 TGCCTTCTTTTCTGTTATAGTACGTA 58.170 34.615 0.00 0.00 0.00 3.57
612 1258 9.989869 GATTTGCCTTCTTTTCTGTTATAGTAC 57.010 33.333 0.00 0.00 0.00 2.73
613 1259 8.879759 CGATTTGCCTTCTTTTCTGTTATAGTA 58.120 33.333 0.00 0.00 0.00 1.82
615 1261 6.688813 GCGATTTGCCTTCTTTTCTGTTATAG 59.311 38.462 0.00 0.00 37.76 1.31
616 1262 6.551736 GCGATTTGCCTTCTTTTCTGTTATA 58.448 36.000 0.00 0.00 37.76 0.98
618 1264 4.794169 GCGATTTGCCTTCTTTTCTGTTA 58.206 39.130 0.00 0.00 37.76 2.41
650 1301 4.699735 CCATAATCTAACAACACAGCACCA 59.300 41.667 0.00 0.00 0.00 4.17
655 1306 5.163723 CCACTGCCATAATCTAACAACACAG 60.164 44.000 0.00 0.00 0.00 3.66
659 1310 5.880332 TCTTCCACTGCCATAATCTAACAAC 59.120 40.000 0.00 0.00 0.00 3.32
660 1311 6.061022 TCTTCCACTGCCATAATCTAACAA 57.939 37.500 0.00 0.00 0.00 2.83
661 1312 5.425217 TCTCTTCCACTGCCATAATCTAACA 59.575 40.000 0.00 0.00 0.00 2.41
662 1313 5.918608 TCTCTTCCACTGCCATAATCTAAC 58.081 41.667 0.00 0.00 0.00 2.34
665 1316 4.472833 ACTTCTCTTCCACTGCCATAATCT 59.527 41.667 0.00 0.00 0.00 2.40
675 1326 4.896482 ACAACTAGTCACTTCTCTTCCACT 59.104 41.667 0.00 0.00 0.00 4.00
676 1327 5.203060 ACAACTAGTCACTTCTCTTCCAC 57.797 43.478 0.00 0.00 0.00 4.02
682 1333 4.932200 CCCATGAACAACTAGTCACTTCTC 59.068 45.833 0.00 0.00 0.00 2.87
684 1335 4.894784 TCCCATGAACAACTAGTCACTTC 58.105 43.478 0.00 0.00 0.00 3.01
688 1339 4.072131 GCTTTCCCATGAACAACTAGTCA 58.928 43.478 0.00 0.00 0.00 3.41
692 1343 4.250464 CGTAGCTTTCCCATGAACAACTA 58.750 43.478 0.00 0.00 0.00 2.24
693 1344 3.074412 CGTAGCTTTCCCATGAACAACT 58.926 45.455 0.00 0.00 0.00 3.16
722 1388 1.067354 CACAGAGGCTGCCAAAAATCC 60.067 52.381 22.65 0.68 34.37 3.01
751 1429 1.001764 CCAGCAGAGGACAATGCCA 60.002 57.895 0.00 0.00 43.60 4.92
752 1430 1.001641 ACCAGCAGAGGACAATGCC 60.002 57.895 0.00 0.00 43.60 4.40
757 1435 1.071987 CAAGCACCAGCAGAGGACA 59.928 57.895 0.00 0.00 45.49 4.02
769 1447 2.341176 CCTGCCAAAGCCAAGCAC 59.659 61.111 0.00 0.00 38.69 4.40
770 1448 3.618750 GCCTGCCAAAGCCAAGCA 61.619 61.111 0.00 0.00 38.69 3.91
772 1450 2.985282 TCGCCTGCCAAAGCCAAG 60.985 61.111 0.00 0.00 38.69 3.61
773 1451 2.985282 CTCGCCTGCCAAAGCCAA 60.985 61.111 0.00 0.00 38.69 4.52
774 1452 3.790416 AACTCGCCTGCCAAAGCCA 62.790 57.895 0.00 0.00 38.69 4.75
775 1453 2.985847 AACTCGCCTGCCAAAGCC 60.986 61.111 0.00 0.00 38.69 4.35
776 1454 2.256461 CAACTCGCCTGCCAAAGC 59.744 61.111 0.00 0.00 40.48 3.51
777 1455 1.283793 CACAACTCGCCTGCCAAAG 59.716 57.895 0.00 0.00 0.00 2.77
778 1456 2.192861 CCACAACTCGCCTGCCAAA 61.193 57.895 0.00 0.00 0.00 3.28
779 1457 2.594303 CCACAACTCGCCTGCCAA 60.594 61.111 0.00 0.00 0.00 4.52
784 1467 2.113139 CCCAACCACAACTCGCCT 59.887 61.111 0.00 0.00 0.00 5.52
787 1470 2.551912 GGCACCCAACCACAACTCG 61.552 63.158 0.00 0.00 0.00 4.18
798 1481 1.602323 CGTTTTAGGCAGGCACCCA 60.602 57.895 0.00 0.00 0.00 4.51
811 1494 0.110373 GCGCCTGATTCGAACGTTTT 60.110 50.000 0.46 0.00 0.00 2.43
947 1712 4.323477 TTTGCGGGTGACGGGGAG 62.323 66.667 0.00 0.00 44.51 4.30
948 1713 4.323477 CTTTGCGGGTGACGGGGA 62.323 66.667 0.00 0.00 44.51 4.81
953 1718 2.010582 TTTGTGCCTTTGCGGGTGAC 62.011 55.000 0.00 0.00 41.78 3.67
954 1719 1.733402 CTTTGTGCCTTTGCGGGTGA 61.733 55.000 0.00 0.00 41.78 4.02
955 1720 1.300080 CTTTGTGCCTTTGCGGGTG 60.300 57.895 0.00 0.00 41.78 4.61
956 1721 1.454847 TCTTTGTGCCTTTGCGGGT 60.455 52.632 0.00 0.00 41.78 5.28
957 1722 1.172180 TCTCTTTGTGCCTTTGCGGG 61.172 55.000 0.00 0.00 41.78 6.13
958 1723 0.239347 CTCTCTTTGTGCCTTTGCGG 59.761 55.000 0.00 0.00 41.78 5.69
959 1724 0.239347 CCTCTCTTTGTGCCTTTGCG 59.761 55.000 0.00 0.00 41.78 4.85
960 1725 1.538950 CTCCTCTCTTTGTGCCTTTGC 59.461 52.381 0.00 0.00 38.26 3.68
961 1726 2.157738 CCTCCTCTCTTTGTGCCTTTG 58.842 52.381 0.00 0.00 0.00 2.77
962 1727 1.074566 CCCTCCTCTCTTTGTGCCTTT 59.925 52.381 0.00 0.00 0.00 3.11
963 1728 0.695347 CCCTCCTCTCTTTGTGCCTT 59.305 55.000 0.00 0.00 0.00 4.35
964 1729 1.204113 CCCCTCCTCTCTTTGTGCCT 61.204 60.000 0.00 0.00 0.00 4.75
976 1741 3.700350 CCAGTCCCCTCCCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
982 1747 2.766229 GCTCCTCCAGTCCCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
988 1753 2.486042 GTCGTCGCTCCTCCAGTC 59.514 66.667 0.00 0.00 0.00 3.51
1008 1773 3.669344 TGGAAAAAGCGCGGCAGG 61.669 61.111 8.83 0.00 0.00 4.85
1010 1775 3.972276 GGTGGAAAAAGCGCGGCA 61.972 61.111 8.83 0.00 0.00 5.69
1015 1780 1.586154 ATGGAGCGGTGGAAAAAGCG 61.586 55.000 0.00 0.00 43.66 4.68
1016 1781 0.171231 GATGGAGCGGTGGAAAAAGC 59.829 55.000 0.00 0.00 0.00 3.51
1017 1782 0.447801 CGATGGAGCGGTGGAAAAAG 59.552 55.000 0.00 0.00 0.00 2.27
1018 1783 0.958382 CCGATGGAGCGGTGGAAAAA 60.958 55.000 0.00 0.00 46.07 1.94
1019 1784 1.376683 CCGATGGAGCGGTGGAAAA 60.377 57.895 0.00 0.00 46.07 2.29
1020 1785 2.267642 CCGATGGAGCGGTGGAAA 59.732 61.111 0.00 0.00 46.07 3.13
1027 1792 0.108329 AAGTGGTAACCGATGGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
1028 1793 2.547826 GTAAGTGGTAACCGATGGAGC 58.452 52.381 0.00 0.00 0.00 4.70
1029 1794 2.764572 AGGTAAGTGGTAACCGATGGAG 59.235 50.000 0.00 0.00 40.88 3.86
1030 1795 2.762327 GAGGTAAGTGGTAACCGATGGA 59.238 50.000 0.00 0.00 40.88 3.41
1031 1796 2.159000 GGAGGTAAGTGGTAACCGATGG 60.159 54.545 0.00 0.00 40.88 3.51
1032 1797 2.498481 TGGAGGTAAGTGGTAACCGATG 59.502 50.000 0.00 0.00 40.88 3.84
1033 1798 2.498885 GTGGAGGTAAGTGGTAACCGAT 59.501 50.000 0.00 0.00 40.88 4.18
1046 1811 2.092321 GGAGAGAGTAGCAGTGGAGGTA 60.092 54.545 0.00 0.00 0.00 3.08
1047 1812 1.341581 GGAGAGAGTAGCAGTGGAGGT 60.342 57.143 0.00 0.00 0.00 3.85
1049 1814 1.398692 GGGAGAGAGTAGCAGTGGAG 58.601 60.000 0.00 0.00 0.00 3.86
1050 1815 0.033011 GGGGAGAGAGTAGCAGTGGA 60.033 60.000 0.00 0.00 0.00 4.02
1051 1816 0.032615 AGGGGAGAGAGTAGCAGTGG 60.033 60.000 0.00 0.00 0.00 4.00
1052 1817 1.064017 AGAGGGGAGAGAGTAGCAGTG 60.064 57.143 0.00 0.00 0.00 3.66
1053 1818 1.304891 AGAGGGGAGAGAGTAGCAGT 58.695 55.000 0.00 0.00 0.00 4.40
1054 1819 2.306847 GAAGAGGGGAGAGAGTAGCAG 58.693 57.143 0.00 0.00 0.00 4.24
1055 1820 1.063567 GGAAGAGGGGAGAGAGTAGCA 60.064 57.143 0.00 0.00 0.00 3.49
1056 1821 1.216930 AGGAAGAGGGGAGAGAGTAGC 59.783 57.143 0.00 0.00 0.00 3.58
1057 1822 3.204382 AGAAGGAAGAGGGGAGAGAGTAG 59.796 52.174 0.00 0.00 0.00 2.57
1058 1823 3.203059 AGAAGGAAGAGGGGAGAGAGTA 58.797 50.000 0.00 0.00 0.00 2.59
1063 1828 2.657459 AGAAGAGAAGGAAGAGGGGAGA 59.343 50.000 0.00 0.00 0.00 3.71
1066 1831 3.035363 GGTAGAAGAGAAGGAAGAGGGG 58.965 54.545 0.00 0.00 0.00 4.79
1075 1840 1.064357 GACGCGGAGGTAGAAGAGAAG 59.936 57.143 12.47 0.00 0.00 2.85
1091 1921 3.053849 GAGTGAGACCCCGAGACGC 62.054 68.421 0.00 0.00 0.00 5.19
1100 1930 3.083997 ATGGGCGGGAGTGAGACC 61.084 66.667 0.00 0.00 0.00 3.85
1319 2216 0.611200 CGGTGGACTGGATGGTGTTA 59.389 55.000 0.00 0.00 0.00 2.41
1349 2246 1.915769 GAGGAGACCCTGTGGCAGT 60.916 63.158 0.00 0.00 44.53 4.40
1351 2248 1.915266 CTGAGGAGACCCTGTGGCA 60.915 63.158 0.00 0.00 44.53 4.92
1352 2249 2.985456 CTGAGGAGACCCTGTGGC 59.015 66.667 0.00 0.00 44.53 5.01
1353 2250 2.664081 GGCTGAGGAGACCCTGTGG 61.664 68.421 0.00 0.00 44.53 4.17
1355 2252 2.681778 CGGCTGAGGAGACCCTGT 60.682 66.667 0.00 0.00 44.53 4.00
1356 2253 4.154347 GCGGCTGAGGAGACCCTG 62.154 72.222 0.00 0.00 44.53 4.45
1364 2261 2.852495 TTAAGAAGGCGCGGCTGAGG 62.852 60.000 36.94 0.00 0.00 3.86
1365 2262 0.811616 ATTAAGAAGGCGCGGCTGAG 60.812 55.000 36.94 0.00 0.00 3.35
1366 2263 0.392461 AATTAAGAAGGCGCGGCTGA 60.392 50.000 36.94 18.66 0.00 4.26
1367 2264 1.003866 GTAATTAAGAAGGCGCGGCTG 60.004 52.381 36.94 0.00 0.00 4.85
1368 2265 1.134491 AGTAATTAAGAAGGCGCGGCT 60.134 47.619 31.39 31.39 0.00 5.52
1369 2266 1.296727 AGTAATTAAGAAGGCGCGGC 58.703 50.000 27.06 27.06 0.00 6.53
1370 2267 4.117685 AGTAAGTAATTAAGAAGGCGCGG 58.882 43.478 8.83 0.00 0.00 6.46
1371 2268 5.519206 AGAAGTAAGTAATTAAGAAGGCGCG 59.481 40.000 0.00 0.00 0.00 6.86
1372 2269 6.534079 TCAGAAGTAAGTAATTAAGAAGGCGC 59.466 38.462 0.00 0.00 0.00 6.53
1382 2279 6.849502 TCATCGTCGTCAGAAGTAAGTAATT 58.150 36.000 0.00 0.00 0.00 1.40
1387 2284 5.163302 AGATCATCGTCGTCAGAAGTAAG 57.837 43.478 0.00 0.00 0.00 2.34
1389 2286 3.245519 CGAGATCATCGTCGTCAGAAGTA 59.754 47.826 0.00 0.00 46.62 2.24
1391 2288 2.634371 CGAGATCATCGTCGTCAGAAG 58.366 52.381 0.00 0.00 46.62 2.85
1392 2289 2.739293 CGAGATCATCGTCGTCAGAA 57.261 50.000 0.00 0.00 46.62 3.02
1428 2331 3.847709 GAGCAGAGAACGCAGCGC 61.848 66.667 16.61 0.00 0.00 5.92
1429 2332 2.126149 AGAGCAGAGAACGCAGCG 60.126 61.111 14.82 14.82 0.00 5.18
1430 2333 2.099431 CCAGAGCAGAGAACGCAGC 61.099 63.158 0.00 0.00 0.00 5.25
1433 2336 1.803519 CGTCCAGAGCAGAGAACGC 60.804 63.158 0.00 0.00 0.00 4.84
1450 2353 2.934553 CTGCATAGCATATCCATGTCCG 59.065 50.000 0.00 0.00 38.13 4.79
1455 2358 4.622457 CGAACCTCTGCATAGCATATCCAT 60.622 45.833 0.00 0.00 38.13 3.41
1456 2359 3.306294 CGAACCTCTGCATAGCATATCCA 60.306 47.826 0.00 0.00 38.13 3.41
1457 2360 3.257393 CGAACCTCTGCATAGCATATCC 58.743 50.000 0.00 0.00 38.13 2.59
1458 2361 3.257393 CCGAACCTCTGCATAGCATATC 58.743 50.000 0.00 0.00 38.13 1.63
1459 2362 2.027745 CCCGAACCTCTGCATAGCATAT 60.028 50.000 0.00 0.00 38.13 1.78
1460 2363 1.344438 CCCGAACCTCTGCATAGCATA 59.656 52.381 0.00 0.00 38.13 3.14
1597 2502 1.213013 GAGTCGCATGGTGACGTCT 59.787 57.895 17.92 0.00 46.23 4.18
1626 2531 0.396139 ATGGTCACATGGGCATGGAC 60.396 55.000 0.00 0.01 42.91 4.02
1636 2541 0.552848 GGGGATGGACATGGTCACAT 59.447 55.000 0.00 0.00 37.99 3.21
1637 2542 0.844221 TGGGGATGGACATGGTCACA 60.844 55.000 0.00 0.00 33.68 3.58
1638 2543 0.394352 GTGGGGATGGACATGGTCAC 60.394 60.000 0.00 0.00 33.68 3.67
1639 2544 1.570857 GGTGGGGATGGACATGGTCA 61.571 60.000 0.00 0.00 33.68 4.02
1640 2545 1.227383 GGTGGGGATGGACATGGTC 59.773 63.158 0.00 0.00 0.00 4.02
1641 2546 1.230281 AGGTGGGGATGGACATGGT 60.230 57.895 0.00 0.00 0.00 3.55
1643 2548 1.281199 TGGAGGTGGGGATGGACATG 61.281 60.000 0.00 0.00 0.00 3.21
1644 2549 1.084652 TGGAGGTGGGGATGGACAT 59.915 57.895 0.00 0.00 0.00 3.06
1645 2550 1.923395 GTGGAGGTGGGGATGGACA 60.923 63.158 0.00 0.00 0.00 4.02
1646 2551 2.680370 GGTGGAGGTGGGGATGGAC 61.680 68.421 0.00 0.00 0.00 4.02
1647 2552 2.286121 GGTGGAGGTGGGGATGGA 60.286 66.667 0.00 0.00 0.00 3.41
1648 2553 2.613696 TGGTGGAGGTGGGGATGG 60.614 66.667 0.00 0.00 0.00 3.51
1649 2554 1.788518 TTGTGGTGGAGGTGGGGATG 61.789 60.000 0.00 0.00 0.00 3.51
1650 2555 1.071314 TTTGTGGTGGAGGTGGGGAT 61.071 55.000 0.00 0.00 0.00 3.85
1651 2556 1.071314 ATTTGTGGTGGAGGTGGGGA 61.071 55.000 0.00 0.00 0.00 4.81
1667 2572 4.437682 TTCTGTGGAGTGGAAGTGATTT 57.562 40.909 0.00 0.00 0.00 2.17
1685 2590 7.165372 AGGAACTATGCGGGAATGGAATTCT 62.165 44.000 5.23 0.00 46.30 2.40
1686 2591 4.988364 AGGAACTATGCGGGAATGGAATTC 60.988 45.833 0.00 0.00 46.34 2.17
1688 2593 2.443255 AGGAACTATGCGGGAATGGAAT 59.557 45.455 0.00 0.00 36.02 3.01
1689 2594 1.843851 AGGAACTATGCGGGAATGGAA 59.156 47.619 0.00 0.00 36.02 3.53
1690 2595 1.507140 AGGAACTATGCGGGAATGGA 58.493 50.000 0.00 0.00 36.02 3.41
1691 2596 2.348411 AAGGAACTATGCGGGAATGG 57.652 50.000 0.00 0.00 38.49 3.16
1692 2597 3.065371 GTGAAAGGAACTATGCGGGAATG 59.935 47.826 0.00 0.00 38.49 2.67
1693 2598 3.279434 GTGAAAGGAACTATGCGGGAAT 58.721 45.455 0.00 0.00 38.49 3.01
1695 2600 1.626321 TGTGAAAGGAACTATGCGGGA 59.374 47.619 0.00 0.00 38.49 5.14
1697 2602 4.155826 TGATTTGTGAAAGGAACTATGCGG 59.844 41.667 0.00 0.00 38.49 5.69
1699 2604 5.048083 TGGTGATTTGTGAAAGGAACTATGC 60.048 40.000 0.00 0.00 38.49 3.14
1700 2605 6.573664 TGGTGATTTGTGAAAGGAACTATG 57.426 37.500 0.00 0.00 38.49 2.23
1709 2614 4.444022 CCATGGGTTTGGTGATTTGTGAAA 60.444 41.667 2.85 0.00 31.74 2.69
1710 2615 3.070734 CCATGGGTTTGGTGATTTGTGAA 59.929 43.478 2.85 0.00 31.74 3.18
1713 2618 2.969628 TCCATGGGTTTGGTGATTTGT 58.030 42.857 13.02 0.00 38.01 2.83
1715 2620 4.166539 TCATTCCATGGGTTTGGTGATTT 58.833 39.130 13.02 0.00 38.01 2.17
1720 2625 3.263937 CCAATTCATTCCATGGGTTTGGT 59.736 43.478 13.02 0.00 38.01 3.67
1737 2642 0.606096 GCCGGTTAAACTGCCCAATT 59.394 50.000 1.90 0.00 0.00 2.32
1747 2652 1.563924 TAGGAGAGCAGCCGGTTAAA 58.436 50.000 1.90 0.00 0.00 1.52
1751 2656 1.789523 TTAATAGGAGAGCAGCCGGT 58.210 50.000 1.90 0.00 0.00 5.28
1754 2659 4.100189 TCAGACTTTAATAGGAGAGCAGCC 59.900 45.833 0.00 0.00 0.00 4.85
1755 2660 5.269505 TCAGACTTTAATAGGAGAGCAGC 57.730 43.478 0.00 0.00 0.00 5.25
1758 2663 7.467947 GCCAAATTCAGACTTTAATAGGAGAGC 60.468 40.741 0.00 0.00 0.00 4.09
1759 2664 7.772757 AGCCAAATTCAGACTTTAATAGGAGAG 59.227 37.037 0.00 0.00 0.00 3.20
1763 2668 7.396540 ACAGCCAAATTCAGACTTTAATAGG 57.603 36.000 0.00 0.00 0.00 2.57
1766 2671 5.473504 ACGACAGCCAAATTCAGACTTTAAT 59.526 36.000 0.00 0.00 0.00 1.40
1770 2675 2.808543 GACGACAGCCAAATTCAGACTT 59.191 45.455 0.00 0.00 0.00 3.01
1839 2776 0.613572 TGATCTCGGGGCTGTACACA 60.614 55.000 0.00 0.00 0.00 3.72
1935 2872 4.023980 GGTCCGATATGATGTGGGAGATA 58.976 47.826 0.00 0.00 0.00 1.98
1985 2922 1.004185 CAGAGCTTTGGCAATCGATCG 60.004 52.381 9.36 9.36 41.70 3.69
1987 2924 0.737219 GCAGAGCTTTGGCAATCGAT 59.263 50.000 6.36 0.00 41.70 3.59
1989 2926 0.179171 CAGCAGAGCTTTGGCAATCG 60.179 55.000 6.36 0.00 36.40 3.34
1990 2927 0.886563 ACAGCAGAGCTTTGGCAATC 59.113 50.000 6.36 0.00 36.40 2.67
1991 2928 1.335145 AACAGCAGAGCTTTGGCAAT 58.665 45.000 6.36 0.00 36.40 3.56
1992 2929 1.979855 TAACAGCAGAGCTTTGGCAA 58.020 45.000 6.36 0.00 36.40 4.52
1993 2930 2.205022 ATAACAGCAGAGCTTTGGCA 57.795 45.000 6.36 0.00 36.40 4.92
1994 2931 3.582714 AAATAACAGCAGAGCTTTGGC 57.417 42.857 6.36 1.67 36.40 4.52
1995 2932 5.776744 AGAAAAATAACAGCAGAGCTTTGG 58.223 37.500 6.36 0.00 36.40 3.28
1996 2933 6.919662 TGAAGAAAAATAACAGCAGAGCTTTG 59.080 34.615 0.00 0.00 36.40 2.77
2002 2955 6.016276 GGGTTCTGAAGAAAAATAACAGCAGA 60.016 38.462 0.00 0.00 35.58 4.26
2003 2956 6.152379 GGGTTCTGAAGAAAAATAACAGCAG 58.848 40.000 0.00 0.00 35.58 4.24
2015 2968 4.079980 TGATTTCACGGGTTCTGAAGAA 57.920 40.909 0.00 0.00 0.00 2.52
2051 3004 4.809426 TCGTTCTGTTCAAAAGAGAAGGTC 59.191 41.667 14.77 0.00 43.22 3.85
2065 3018 0.928229 GCGTGTCACTTCGTTCTGTT 59.072 50.000 0.65 0.00 0.00 3.16
2081 3034 4.896028 CTCAGCTCGATCGCGCGT 62.896 66.667 30.98 17.41 37.46 6.01
2115 3068 0.407528 TTGATGTAAGCAGGGCCCAA 59.592 50.000 27.56 1.34 28.24 4.12
2126 3079 0.107703 CCTGGCCGAGCTTGATGTAA 60.108 55.000 1.22 0.00 0.00 2.41
2180 3133 1.153608 CTGCAGCTCAGTCATCGCT 60.154 57.895 0.00 0.00 38.02 4.93
2280 3237 4.623932 AGTTGAGCTACATTGGACTTCA 57.376 40.909 0.00 0.00 0.00 3.02
2281 3238 5.948992 AAAGTTGAGCTACATTGGACTTC 57.051 39.130 0.00 0.00 29.21 3.01
2289 3246 6.013639 ACCCAGTTAGTAAAGTTGAGCTACAT 60.014 38.462 0.00 0.00 0.00 2.29
2300 3257 4.034048 CAGCGCATAACCCAGTTAGTAAAG 59.966 45.833 11.47 0.00 31.29 1.85
2327 3284 0.536460 GGAACGAAGGAACCTTGCCA 60.536 55.000 11.02 0.00 36.26 4.92
2411 3368 2.103153 TTGGTGAGGGAGACAGTTCT 57.897 50.000 0.00 0.00 33.37 3.01
2432 3389 2.810274 TCTAGTATAGTTACCTGCGGCG 59.190 50.000 0.51 0.51 40.38 6.46
2435 3392 7.595502 CCAAGATTTCTAGTATAGTTACCTGCG 59.404 40.741 0.00 0.00 40.38 5.18
2479 3436 8.386606 CAATTAGTTCAGACTTAACTGATCAGC 58.613 37.037 22.83 5.16 44.67 4.26
2486 3443 9.355215 CGATACACAATTAGTTCAGACTTAACT 57.645 33.333 7.20 7.20 40.25 2.24
2537 3494 2.817844 GTCTTTCAACCGGCCTTTGTAT 59.182 45.455 0.00 0.00 0.00 2.29
2706 3663 7.171508 TCAGTGTGAGCTAATAAAGACAGTTTG 59.828 37.037 0.00 0.00 0.00 2.93
2717 3674 4.805719 CAGCGATTTCAGTGTGAGCTAATA 59.194 41.667 0.00 0.00 31.75 0.98
2754 3711 1.470996 GGCCAACAACATCAAGGGCA 61.471 55.000 0.00 0.00 43.09 5.36
2939 3896 7.038154 TCCAACTCTCCAACAATACAAAAAG 57.962 36.000 0.00 0.00 0.00 2.27
2954 3911 6.017400 TCTGAATGCAAAATTCCAACTCTC 57.983 37.500 0.00 0.00 0.00 3.20
2998 3955 3.641434 ACAGCCTGAATGTGAAGCTAT 57.359 42.857 0.00 0.00 31.23 2.97
3133 4094 3.846588 ACCCAACATCATCCTCAGTACTT 59.153 43.478 0.00 0.00 0.00 2.24
3197 4158 7.123830 ACGTACATCAAAGAAGAAGAAAAACG 58.876 34.615 0.00 0.00 0.00 3.60
3244 4205 0.473755 AGGTGAGTGTGCAATGGACA 59.526 50.000 2.74 2.74 0.00 4.02
3247 4208 0.892358 AGCAGGTGAGTGTGCAATGG 60.892 55.000 0.00 0.00 42.47 3.16
3327 4288 7.564793 TCCAGTATCAAGTAACTGCAATACAT 58.435 34.615 10.87 0.00 41.45 2.29
3588 4568 6.313905 CACACTAATTAGTAAAGCAGGGTGAG 59.686 42.308 17.62 3.86 36.52 3.51
3612 4592 8.098220 TGTTATGTTTAGTCTACTGTACGACA 57.902 34.615 15.08 5.63 32.68 4.35
3630 4610 5.465532 TCAATGGTTTGCACATGTTATGT 57.534 34.783 0.00 0.00 46.22 2.29
3638 4618 3.540314 AAAGCTTCAATGGTTTGCACA 57.460 38.095 0.00 0.00 36.46 4.57
3669 4649 6.183360 GGTGTATTATACAAACAGGCTGACAC 60.183 42.308 23.66 18.93 40.93 3.67
3725 4818 0.395586 TTTGTCACAAGCCCTGCAGT 60.396 50.000 13.81 0.00 0.00 4.40
3746 4839 4.705023 TCCGTACTTCTGATCATCTGTCAA 59.295 41.667 0.00 0.00 0.00 3.18
3943 5036 0.249657 CTAGATCCGCTGCCAACTCC 60.250 60.000 0.00 0.00 0.00 3.85
4255 5512 5.757850 TCAAAGGAAGCAGTTCTCTTTTC 57.242 39.130 0.00 0.00 34.00 2.29
4307 5564 4.101430 AGCCAAAACCACAAATCAGTGATT 59.899 37.500 12.75 12.75 42.05 2.57
4398 5655 1.403679 TCAAAGACACCTGTTTTGCCG 59.596 47.619 7.59 0.00 33.10 5.69
4440 5697 4.726416 TGAAATTCTCGAAAGCTTGCATC 58.274 39.130 5.01 0.00 0.00 3.91
4608 5865 4.947388 TCAGAGAGTAGAAAAGAGAGAGCC 59.053 45.833 0.00 0.00 0.00 4.70
4715 5972 1.985473 ATTGCTCCACTGAGTGCAAA 58.015 45.000 11.95 2.27 46.31 3.68
4732 5989 7.673926 AGGTACATTTCCACCATTCAGTAAATT 59.326 33.333 0.00 0.00 37.28 1.82
4764 6021 2.223340 GCATAAGCACTTGACCGAATGG 60.223 50.000 0.00 0.00 41.58 3.16
4785 6042 9.401058 ACAGAAGAATAAAAGGGATCAATACAG 57.599 33.333 0.00 0.00 0.00 2.74
4856 6113 6.183359 CGAAAGATGAAGCAATTTGTAGCAAC 60.183 38.462 0.00 0.00 0.00 4.17
4979 6236 1.315690 ACTTGACGACCTTCTCGACA 58.684 50.000 0.00 0.00 46.14 4.35
5063 6321 4.340950 CCTTTTGTGTTGCCTAGGAAAGAA 59.659 41.667 14.75 0.00 0.00 2.52
5287 6552 7.461182 TTCCTGTCAAAAGAAGAAGAAAACA 57.539 32.000 0.00 0.00 0.00 2.83
5288 6553 8.932945 ATTTCCTGTCAAAAGAAGAAGAAAAC 57.067 30.769 0.00 0.00 0.00 2.43
5316 6581 8.996651 TGAAAGGAAAAGGAGAAATAACTCTT 57.003 30.769 0.00 0.00 37.13 2.85
5460 6731 2.280797 GCCACACGCAAGACTCCA 60.281 61.111 0.00 0.00 43.62 3.86
5501 6774 0.042581 TCTATGTGAGACTGCCCCCA 59.957 55.000 0.00 0.00 0.00 4.96
5555 7272 6.094881 ACGGCACAAGTATACATTATGCTTTT 59.905 34.615 16.20 4.13 38.75 2.27
5686 7404 6.093219 ACAGAGTTTGCACTTCTGCTATATTG 59.907 38.462 16.93 0.00 44.57 1.90
5690 7408 4.013267 ACAGAGTTTGCACTTCTGCTAT 57.987 40.909 16.93 0.98 44.57 2.97
5710 7428 9.821662 CCTACTAGTTACTGCAAATTTTTGTAC 57.178 33.333 0.00 0.00 40.24 2.90
5722 7440 2.418334 GGGCACACCTACTAGTTACTGC 60.418 54.545 0.00 1.57 35.85 4.40
5745 7463 8.935844 TGCTGTAGATAAGTGTTGAAAATACAG 58.064 33.333 0.00 0.00 40.76 2.74
5817 7535 7.070322 TCCTTGACTTAGTAGTTTACTGTTGGT 59.930 37.037 0.00 0.00 39.81 3.67
5831 7549 2.054799 TGCCCTTGTCCTTGACTTAGT 58.945 47.619 0.00 0.00 33.15 2.24
5850 7568 3.057946 GGCTACAGTTTTCTTCTGCCTTG 60.058 47.826 0.00 0.00 36.50 3.61
5855 7573 6.876257 AGATAACAGGCTACAGTTTTCTTCTG 59.124 38.462 4.18 0.00 33.11 3.02
5902 7655 6.662755 TGCAATAAGTTGATAATCCCACTCT 58.337 36.000 0.00 0.00 37.53 3.24
5909 7662 7.589221 GCTACAGCTTGCAATAAGTTGATAATC 59.411 37.037 0.00 0.00 36.37 1.75
5922 7675 1.610624 GGTAGTGGCTACAGCTTGCAA 60.611 52.381 2.02 0.00 38.58 4.08
5947 7700 2.371841 TGCACCAGCTTAAAGAGGAAGA 59.628 45.455 0.00 0.00 42.74 2.87
5987 7745 2.613133 GCAGAGGCAACATCTGAAGATC 59.387 50.000 12.98 0.00 45.80 2.75
5988 7746 2.641305 GCAGAGGCAACATCTGAAGAT 58.359 47.619 12.98 0.00 45.80 2.40
5989 7747 1.339438 GGCAGAGGCAACATCTGAAGA 60.339 52.381 12.98 0.00 45.80 2.87
5990 7748 1.093159 GGCAGAGGCAACATCTGAAG 58.907 55.000 12.98 0.00 45.80 3.02
6008 7766 0.320073 TTGCGGTTCTCCAGTTACGG 60.320 55.000 0.00 0.00 0.00 4.02
6015 7773 1.544825 CCTCCTCTTGCGGTTCTCCA 61.545 60.000 0.00 0.00 0.00 3.86
6060 7818 1.270826 CAGAGAAGTCGGAGCACAGAA 59.729 52.381 0.00 0.00 0.00 3.02
6070 7828 0.039074 AACGGCTGACAGAGAAGTCG 60.039 55.000 6.65 0.00 46.61 4.18
6092 7850 0.384353 GAGGAAAACGTTGCGCTCAC 60.384 55.000 9.73 4.38 0.00 3.51
6173 7931 9.430399 AGCAAGGTATTAAAGGTAGACACTATA 57.570 33.333 0.00 0.00 0.00 1.31
6174 7932 8.204836 CAGCAAGGTATTAAAGGTAGACACTAT 58.795 37.037 0.00 0.00 0.00 2.12
6177 7935 5.064834 GCAGCAAGGTATTAAAGGTAGACAC 59.935 44.000 0.00 0.00 0.00 3.67
6192 7954 1.878102 CGGTAGACAAAGCAGCAAGGT 60.878 52.381 0.00 0.00 0.00 3.50
6193 7955 0.798776 CGGTAGACAAAGCAGCAAGG 59.201 55.000 0.00 0.00 0.00 3.61
6218 7980 5.293814 CCTACATTCTCAGCAGATTGAACAG 59.706 44.000 3.68 0.00 34.75 3.16
6224 7986 7.095910 CGAATATCCTACATTCTCAGCAGATT 58.904 38.462 0.00 0.00 31.49 2.40
6288 8051 2.550978 CTGGCGAATTGTTAGTCCGAT 58.449 47.619 0.00 0.00 0.00 4.18
6292 8055 2.007608 GGTCCTGGCGAATTGTTAGTC 58.992 52.381 0.00 0.00 0.00 2.59
6297 8065 0.400213 TGAAGGTCCTGGCGAATTGT 59.600 50.000 0.00 0.00 0.00 2.71
6311 8079 4.378774 CAGCTGAAGGATACATCTGAAGG 58.621 47.826 8.42 0.00 35.53 3.46
6394 8162 1.604693 GCAGCAATGCAGGCATATTCC 60.605 52.381 15.28 0.00 35.31 3.01
6400 8168 2.642254 GGAAGCAGCAATGCAGGCA 61.642 57.895 20.65 0.00 37.25 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.