Multiple sequence alignment - TraesCS6A01G387900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G387900 chr6A 100.000 3428 0 0 1 3428 604383647 604387074 0.000000e+00 6331.0
1 TraesCS6A01G387900 chr6A 93.426 1719 65 31 635 2325 604294460 604296158 0.000000e+00 2505.0
2 TraesCS6A01G387900 chr6A 98.246 57 1 0 3117 3173 604293025 604292969 2.180000e-17 100.0
3 TraesCS6A01G387900 chr6A 92.188 64 4 1 3300 3362 604292772 604292709 4.710000e-14 89.8
4 TraesCS6A01G387900 chr6A 95.918 49 2 0 3125 3173 604312434 604312386 2.840000e-11 80.5
5 TraesCS6A01G387900 chr6D 92.521 2059 89 27 566 2587 457347598 457345568 0.000000e+00 2889.0
6 TraesCS6A01G387900 chr6D 88.923 1652 118 42 719 2325 457473573 457471942 0.000000e+00 1977.0
7 TraesCS6A01G387900 chr6D 84.884 516 16 18 2965 3428 457343534 457343029 6.700000e-127 464.0
8 TraesCS6A01G387900 chr6D 94.444 90 5 0 635 724 457474280 457474191 4.610000e-29 139.0
9 TraesCS6A01G387900 chr6D 77.895 190 40 2 2106 2294 292376613 292376801 2.160000e-22 117.0
10 TraesCS6A01G387900 chr6D 90.909 66 4 2 499 563 437776544 437776480 1.690000e-13 87.9
11 TraesCS6A01G387900 chr6D 94.643 56 3 0 3112 3167 457475741 457475796 1.690000e-13 87.9
12 TraesCS6A01G387900 chr6D 97.959 49 1 0 3125 3173 457367802 457367850 6.100000e-13 86.1
13 TraesCS6A01G387900 chr6B 87.054 2186 141 70 635 2718 695936605 695938750 0.000000e+00 2338.0
14 TraesCS6A01G387900 chr6B 86.585 164 5 6 3006 3167 695939291 695939439 7.610000e-37 165.0
15 TraesCS6A01G387900 chr6B 86.316 95 8 2 2862 2956 695939186 695939275 7.830000e-17 99.0
16 TraesCS6A01G387900 chr6B 93.548 62 4 0 3112 3173 695935042 695934981 3.640000e-15 93.5
17 TraesCS6A01G387900 chr5A 87.514 881 53 31 635 1480 531241510 531240652 0.000000e+00 965.0
18 TraesCS6A01G387900 chr5A 74.247 963 186 43 1351 2295 454720371 454721289 7.040000e-92 348.0
19 TraesCS6A01G387900 chr5A 96.667 60 2 0 3114 3173 531242993 531243052 2.180000e-17 100.0
20 TraesCS6A01G387900 chr5A 92.188 64 4 1 3300 3362 531243249 531243312 4.710000e-14 89.8
21 TraesCS6A01G387900 chr5B 74.306 973 184 48 1351 2295 417874736 417875670 5.440000e-93 351.0
22 TraesCS6A01G387900 chr5D 75.848 737 139 25 1571 2295 353763228 353763937 4.240000e-89 339.0
23 TraesCS6A01G387900 chr5D 84.791 263 40 0 78 340 514426755 514426493 7.290000e-67 265.0
24 TraesCS6A01G387900 chr2D 85.274 292 40 3 50 340 586581620 586581331 7.190000e-77 298.0
25 TraesCS6A01G387900 chr2D 85.535 159 19 4 1063 1219 462197433 462197589 2.740000e-36 163.0
26 TraesCS6A01G387900 chr2D 86.726 113 13 2 1370 1481 462197753 462197864 1.290000e-24 124.0
27 TraesCS6A01G387900 chr7D 85.053 281 38 4 70 347 26866689 26866410 2.010000e-72 283.0
28 TraesCS6A01G387900 chr7D 85.283 265 32 2 83 340 29563158 29563422 2.030000e-67 267.0
29 TraesCS6A01G387900 chr7D 81.973 294 49 4 49 341 619680700 619680410 2.640000e-61 246.0
30 TraesCS6A01G387900 chr7D 90.164 61 4 2 505 565 151024156 151024214 1.020000e-10 78.7
31 TraesCS6A01G387900 chr4B 78.767 292 58 4 50 340 591961667 591961379 3.490000e-45 193.0
32 TraesCS6A01G387900 chr4B 78.082 292 60 4 50 340 592085456 592085168 7.560000e-42 182.0
33 TraesCS6A01G387900 chr4B 88.889 63 6 1 501 563 403055501 403055562 3.670000e-10 76.8
34 TraesCS6A01G387900 chr2A 84.153 183 25 4 1063 1243 607476178 607476358 1.260000e-39 174.0
35 TraesCS6A01G387900 chr2A 82.514 183 28 4 1063 1243 610058587 610058767 1.270000e-34 158.0
36 TraesCS6A01G387900 chr2A 73.497 449 98 18 1370 1806 607476495 607476934 2.130000e-32 150.0
37 TraesCS6A01G387900 chr4A 78.327 263 50 7 84 343 631402066 631402324 2.740000e-36 163.0
38 TraesCS6A01G387900 chr2B 83.060 183 27 4 1063 1243 544981724 544981904 2.740000e-36 163.0
39 TraesCS6A01G387900 chr2B 73.094 446 101 18 1370 1806 544982032 544982467 1.280000e-29 141.0
40 TraesCS6A01G387900 chr1B 77.820 266 55 4 82 345 640592487 640592750 9.850000e-36 161.0
41 TraesCS6A01G387900 chr1A 83.846 130 20 1 1677 1806 251376999 251377127 4.650000e-24 122.0
42 TraesCS6A01G387900 chr1D 87.379 103 12 1 1677 1779 199624598 199624699 2.160000e-22 117.0
43 TraesCS6A01G387900 chr7B 83.929 112 18 0 1370 1481 102782876 102782765 1.300000e-19 108.0
44 TraesCS6A01G387900 chr7B 88.889 63 6 1 501 563 113143223 113143284 3.670000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G387900 chr6A 604383647 604387074 3427 False 6331.000000 6331 100.000000 1 3428 1 chr6A.!!$F2 3427
1 TraesCS6A01G387900 chr6A 604294460 604296158 1698 False 2505.000000 2505 93.426000 635 2325 1 chr6A.!!$F1 1690
2 TraesCS6A01G387900 chr6D 457343029 457347598 4569 True 1676.500000 2889 88.702500 566 3428 2 chr6D.!!$R2 2862
3 TraesCS6A01G387900 chr6D 457471942 457474280 2338 True 1058.000000 1977 91.683500 635 2325 2 chr6D.!!$R3 1690
4 TraesCS6A01G387900 chr6B 695936605 695939439 2834 False 867.333333 2338 86.651667 635 3167 3 chr6B.!!$F1 2532
5 TraesCS6A01G387900 chr5A 531240652 531241510 858 True 965.000000 965 87.514000 635 1480 1 chr5A.!!$R1 845
6 TraesCS6A01G387900 chr5A 454720371 454721289 918 False 348.000000 348 74.247000 1351 2295 1 chr5A.!!$F1 944
7 TraesCS6A01G387900 chr5B 417874736 417875670 934 False 351.000000 351 74.306000 1351 2295 1 chr5B.!!$F1 944
8 TraesCS6A01G387900 chr5D 353763228 353763937 709 False 339.000000 339 75.848000 1571 2295 1 chr5D.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.027586 GCTGCTTTGTCGTCGTGTTT 59.972 50.0 0.00 0.00 0.00 2.83 F
483 484 0.036590 TGCTGTGATGTAAGCTGGCA 59.963 50.0 0.00 0.00 40.21 4.92 F
503 504 0.108804 ATAGCCTCGTGTCGGTTGTG 60.109 55.0 0.00 0.00 0.00 3.33 F
2330 3064 0.256464 ACCTCCACGACTAGCTAGCT 59.744 55.0 23.12 23.12 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1970 1.386525 TACAGATACCACCGACGGCC 61.387 60.0 15.39 0.00 0.00 6.13 R
2362 3096 0.249405 GAGCAATCGAGGAGGCTGAG 60.249 60.0 7.51 0.00 36.59 3.35 R
2423 3157 0.464013 AGAAGGCTGCTGCTGCTATG 60.464 55.0 26.79 8.06 40.48 2.23 R
3261 6081 0.106708 GGAATATCTCACCGGCAGCA 59.893 55.0 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.923942 CAGCTCATCCGCCGGCAT 62.924 66.667 28.98 10.88 0.00 4.40
21 22 3.233980 AGCTCATCCGCCGGCATA 61.234 61.111 28.98 14.42 0.00 3.14
22 23 2.046892 GCTCATCCGCCGGCATAT 60.047 61.111 28.98 16.30 0.00 1.78
23 24 2.103042 GCTCATCCGCCGGCATATC 61.103 63.158 28.98 4.17 0.00 1.63
24 25 1.593787 CTCATCCGCCGGCATATCT 59.406 57.895 28.98 2.28 0.00 1.98
25 26 0.738762 CTCATCCGCCGGCATATCTG 60.739 60.000 28.98 15.52 0.00 2.90
26 27 1.004560 CATCCGCCGGCATATCTGT 60.005 57.895 28.98 1.02 0.00 3.41
27 28 1.004560 ATCCGCCGGCATATCTGTG 60.005 57.895 28.98 7.02 0.00 3.66
28 29 3.349006 CCGCCGGCATATCTGTGC 61.349 66.667 28.98 0.00 44.31 4.57
29 30 2.280389 CGCCGGCATATCTGTGCT 60.280 61.111 28.98 0.00 44.45 4.40
35 36 2.328235 GCATATCTGTGCTGCCAGG 58.672 57.895 15.08 4.03 41.82 4.45
36 37 0.179037 GCATATCTGTGCTGCCAGGA 60.179 55.000 15.08 0.00 41.82 3.86
37 38 1.880271 CATATCTGTGCTGCCAGGAG 58.120 55.000 15.08 0.00 33.14 3.69
38 39 0.108207 ATATCTGTGCTGCCAGGAGC 59.892 55.000 15.08 3.95 44.14 4.70
39 40 0.979709 TATCTGTGCTGCCAGGAGCT 60.980 55.000 12.54 0.00 44.23 4.09
40 41 2.254737 ATCTGTGCTGCCAGGAGCTC 62.255 60.000 12.54 4.71 44.23 4.09
41 42 3.972971 CTGTGCTGCCAGGAGCTCC 62.973 68.421 26.22 26.22 44.23 4.70
42 43 4.792804 GTGCTGCCAGGAGCTCCC 62.793 72.222 29.54 14.74 44.23 4.30
44 45 4.486503 GCTGCCAGGAGCTCCCAG 62.487 72.222 29.54 26.98 44.23 4.45
45 46 4.486503 CTGCCAGGAGCTCCCAGC 62.487 72.222 29.28 29.28 44.23 4.85
47 48 4.039092 GCCAGGAGCTCCCAGCAA 62.039 66.667 30.39 0.00 45.56 3.91
48 49 2.045536 CCAGGAGCTCCCAGCAAC 60.046 66.667 29.54 2.09 45.56 4.17
49 50 2.600729 CCAGGAGCTCCCAGCAACT 61.601 63.158 29.54 5.79 45.56 3.16
50 51 1.376942 CAGGAGCTCCCAGCAACTG 60.377 63.158 29.54 15.06 45.56 3.16
51 52 2.749441 GGAGCTCCCAGCAACTGC 60.749 66.667 23.19 0.00 45.56 4.40
52 53 2.749441 GAGCTCCCAGCAACTGCC 60.749 66.667 0.87 0.00 45.56 4.85
53 54 3.557903 GAGCTCCCAGCAACTGCCA 62.558 63.158 0.87 0.00 45.56 4.92
54 55 3.368571 GCTCCCAGCAACTGCCAC 61.369 66.667 0.00 0.00 41.89 5.01
55 56 2.113774 CTCCCAGCAACTGCCACA 59.886 61.111 0.00 0.00 43.38 4.17
56 57 1.303888 CTCCCAGCAACTGCCACAT 60.304 57.895 0.00 0.00 43.38 3.21
57 58 1.592400 CTCCCAGCAACTGCCACATG 61.592 60.000 0.00 0.00 43.38 3.21
58 59 2.642254 CCCAGCAACTGCCACATGG 61.642 63.158 0.00 0.00 43.38 3.66
77 78 3.444657 CAGTTGCTGCTTTGTCGTC 57.555 52.632 0.00 0.00 0.00 4.20
78 79 0.383491 CAGTTGCTGCTTTGTCGTCG 60.383 55.000 0.00 0.00 0.00 5.12
79 80 0.810031 AGTTGCTGCTTTGTCGTCGT 60.810 50.000 0.00 0.00 0.00 4.34
80 81 0.654472 GTTGCTGCTTTGTCGTCGTG 60.654 55.000 0.00 0.00 0.00 4.35
81 82 1.087202 TTGCTGCTTTGTCGTCGTGT 61.087 50.000 0.00 0.00 0.00 4.49
82 83 1.087202 TGCTGCTTTGTCGTCGTGTT 61.087 50.000 0.00 0.00 0.00 3.32
83 84 0.027586 GCTGCTTTGTCGTCGTGTTT 59.972 50.000 0.00 0.00 0.00 2.83
84 85 1.531058 GCTGCTTTGTCGTCGTGTTTT 60.531 47.619 0.00 0.00 0.00 2.43
85 86 2.101125 CTGCTTTGTCGTCGTGTTTTG 58.899 47.619 0.00 0.00 0.00 2.44
86 87 1.732809 TGCTTTGTCGTCGTGTTTTGA 59.267 42.857 0.00 0.00 0.00 2.69
87 88 2.098870 GCTTTGTCGTCGTGTTTTGAC 58.901 47.619 0.00 0.00 0.00 3.18
92 93 3.008327 GTCGTGTTTTGACGGCGT 58.992 55.556 14.65 14.65 39.88 5.68
93 94 1.083847 GTCGTGTTTTGACGGCGTC 60.084 57.895 31.68 31.68 39.88 5.19
94 95 2.128274 CGTGTTTTGACGGCGTCG 60.128 61.111 31.90 17.18 43.02 5.12
95 96 2.247267 GTGTTTTGACGGCGTCGG 59.753 61.111 31.90 0.00 41.39 4.79
96 97 3.641986 TGTTTTGACGGCGTCGGC 61.642 61.111 31.90 13.14 46.45 5.54
113 114 4.308458 CGGTTGCCGTCAGGTGGA 62.308 66.667 0.00 0.00 42.73 4.02
114 115 2.112297 GGTTGCCGTCAGGTGGAA 59.888 61.111 0.00 0.00 40.50 3.53
115 116 1.527380 GGTTGCCGTCAGGTGGAAA 60.527 57.895 0.00 0.00 40.50 3.13
116 117 0.893727 GGTTGCCGTCAGGTGGAAAT 60.894 55.000 0.00 0.00 40.50 2.17
117 118 0.521735 GTTGCCGTCAGGTGGAAATC 59.478 55.000 0.00 0.00 40.50 2.17
118 119 0.109532 TTGCCGTCAGGTGGAAATCA 59.890 50.000 0.00 0.00 40.50 2.57
119 120 0.327924 TGCCGTCAGGTGGAAATCAT 59.672 50.000 0.00 0.00 40.50 2.45
120 121 1.271871 TGCCGTCAGGTGGAAATCATT 60.272 47.619 0.00 0.00 40.50 2.57
121 122 1.133025 GCCGTCAGGTGGAAATCATTG 59.867 52.381 0.00 0.00 40.50 2.82
122 123 1.133025 CCGTCAGGTGGAAATCATTGC 59.867 52.381 0.00 0.00 0.00 3.56
123 124 1.133025 CGTCAGGTGGAAATCATTGCC 59.867 52.381 0.00 0.00 0.00 4.52
124 125 1.133025 GTCAGGTGGAAATCATTGCCG 59.867 52.381 0.00 0.00 0.00 5.69
125 126 1.004161 TCAGGTGGAAATCATTGCCGA 59.996 47.619 0.00 0.00 0.00 5.54
126 127 1.133025 CAGGTGGAAATCATTGCCGAC 59.867 52.381 0.00 0.00 0.00 4.79
127 128 0.098728 GGTGGAAATCATTGCCGACG 59.901 55.000 0.00 0.00 0.00 5.12
128 129 0.098728 GTGGAAATCATTGCCGACGG 59.901 55.000 10.29 10.29 0.00 4.79
139 140 2.446341 GCCGACGGCTTAGATATGC 58.554 57.895 31.30 0.14 46.69 3.14
140 141 1.014564 GCCGACGGCTTAGATATGCC 61.015 60.000 31.30 6.68 46.69 4.40
155 156 2.279517 GCCGATGGCCGTACAGAG 60.280 66.667 0.00 0.00 44.06 3.35
156 157 2.417516 CCGATGGCCGTACAGAGG 59.582 66.667 0.00 0.00 36.31 3.69
157 158 2.423898 CCGATGGCCGTACAGAGGT 61.424 63.158 0.00 0.00 36.31 3.85
158 159 1.065928 CGATGGCCGTACAGAGGTC 59.934 63.158 0.00 0.00 0.00 3.85
159 160 1.065928 GATGGCCGTACAGAGGTCG 59.934 63.158 0.00 0.00 35.82 4.79
160 161 1.664321 GATGGCCGTACAGAGGTCGT 61.664 60.000 0.00 0.00 35.82 4.34
161 162 1.664321 ATGGCCGTACAGAGGTCGTC 61.664 60.000 0.00 0.00 35.82 4.20
162 163 2.099831 GCCGTACAGAGGTCGTCG 59.900 66.667 0.00 0.00 0.00 5.12
163 164 2.789917 CCGTACAGAGGTCGTCGG 59.210 66.667 0.00 0.00 32.67 4.79
164 165 2.099831 CGTACAGAGGTCGTCGGC 59.900 66.667 0.00 0.00 0.00 5.54
165 166 2.683859 CGTACAGAGGTCGTCGGCA 61.684 63.158 0.00 0.00 0.00 5.69
166 167 1.807886 GTACAGAGGTCGTCGGCAT 59.192 57.895 0.00 0.00 0.00 4.40
167 168 1.019673 GTACAGAGGTCGTCGGCATA 58.980 55.000 0.00 0.00 0.00 3.14
168 169 1.607628 GTACAGAGGTCGTCGGCATAT 59.392 52.381 0.00 0.00 0.00 1.78
169 170 1.977056 ACAGAGGTCGTCGGCATATA 58.023 50.000 0.00 0.00 0.00 0.86
170 171 2.515854 ACAGAGGTCGTCGGCATATAT 58.484 47.619 0.00 0.00 0.00 0.86
171 172 2.229062 ACAGAGGTCGTCGGCATATATG 59.771 50.000 8.45 8.45 0.00 1.78
184 185 2.473816 CATATATGCCTATGCCGACGG 58.526 52.381 10.29 10.29 36.33 4.79
194 195 3.719214 GCCGACGGCTTTCCTATG 58.281 61.111 31.30 0.00 46.69 2.23
195 196 2.534903 GCCGACGGCTTTCCTATGC 61.535 63.158 31.30 0.14 46.69 3.14
196 197 1.887707 CCGACGGCTTTCCTATGCC 60.888 63.158 0.00 0.00 45.25 4.40
200 201 3.719214 GGCTTTCCTATGCCGACG 58.281 61.111 0.00 0.00 39.71 5.12
201 202 1.143183 GGCTTTCCTATGCCGACGA 59.857 57.895 0.00 0.00 39.71 4.20
202 203 0.249911 GGCTTTCCTATGCCGACGAT 60.250 55.000 0.00 0.00 39.71 3.73
203 204 1.000506 GGCTTTCCTATGCCGACGATA 59.999 52.381 0.00 0.00 39.71 2.92
204 205 2.353803 GGCTTTCCTATGCCGACGATAT 60.354 50.000 0.00 0.00 39.71 1.63
205 206 2.668457 GCTTTCCTATGCCGACGATATG 59.332 50.000 0.00 0.00 0.00 1.78
206 207 3.614150 GCTTTCCTATGCCGACGATATGA 60.614 47.826 0.00 0.00 0.00 2.15
207 208 3.570926 TTCCTATGCCGACGATATGAC 57.429 47.619 0.00 0.00 0.00 3.06
208 209 2.510613 TCCTATGCCGACGATATGACA 58.489 47.619 0.00 0.00 0.00 3.58
209 210 2.228103 TCCTATGCCGACGATATGACAC 59.772 50.000 0.00 0.00 0.00 3.67
210 211 2.030274 CCTATGCCGACGATATGACACA 60.030 50.000 0.00 0.00 0.00 3.72
211 212 2.820059 ATGCCGACGATATGACACAT 57.180 45.000 0.00 0.00 0.00 3.21
212 213 2.134201 TGCCGACGATATGACACATC 57.866 50.000 0.00 0.00 0.00 3.06
213 214 1.681264 TGCCGACGATATGACACATCT 59.319 47.619 0.00 0.00 0.00 2.90
214 215 2.882137 TGCCGACGATATGACACATCTA 59.118 45.455 0.00 0.00 0.00 1.98
215 216 3.235195 GCCGACGATATGACACATCTAC 58.765 50.000 0.00 0.00 0.00 2.59
216 217 3.479949 CCGACGATATGACACATCTACG 58.520 50.000 0.00 0.00 0.00 3.51
217 218 2.903095 CGACGATATGACACATCTACGC 59.097 50.000 0.00 0.00 0.00 4.42
218 219 3.364068 CGACGATATGACACATCTACGCT 60.364 47.826 0.00 0.00 0.00 5.07
219 220 3.890128 ACGATATGACACATCTACGCTG 58.110 45.455 0.00 0.00 0.00 5.18
220 221 3.564225 ACGATATGACACATCTACGCTGA 59.436 43.478 0.00 0.00 0.00 4.26
221 222 3.908978 CGATATGACACATCTACGCTGAC 59.091 47.826 0.00 0.00 0.00 3.51
240 241 2.713895 CGTGATCTACGCTGATGGAT 57.286 50.000 5.07 0.00 46.92 3.41
241 242 2.323059 CGTGATCTACGCTGATGGATG 58.677 52.381 5.07 0.00 46.92 3.51
242 243 2.287849 CGTGATCTACGCTGATGGATGT 60.288 50.000 5.07 0.00 46.92 3.06
243 244 3.058224 CGTGATCTACGCTGATGGATGTA 60.058 47.826 5.07 0.00 46.92 2.29
244 245 4.379918 CGTGATCTACGCTGATGGATGTAT 60.380 45.833 5.07 0.00 46.92 2.29
245 246 4.861462 GTGATCTACGCTGATGGATGTATG 59.139 45.833 0.00 0.00 0.00 2.39
246 247 3.303881 TCTACGCTGATGGATGTATGC 57.696 47.619 0.00 0.00 0.00 3.14
247 248 2.029020 TCTACGCTGATGGATGTATGCC 60.029 50.000 0.00 0.00 0.00 4.40
248 249 0.601046 ACGCTGATGGATGTATGCCG 60.601 55.000 0.00 0.00 0.00 5.69
249 250 0.319813 CGCTGATGGATGTATGCCGA 60.320 55.000 0.00 0.00 0.00 5.54
250 251 1.673923 CGCTGATGGATGTATGCCGAT 60.674 52.381 0.00 0.00 0.00 4.18
251 252 1.736126 GCTGATGGATGTATGCCGATG 59.264 52.381 0.00 0.00 0.00 3.84
252 253 2.353323 CTGATGGATGTATGCCGATGG 58.647 52.381 0.00 0.00 0.00 3.51
253 254 1.699083 TGATGGATGTATGCCGATGGT 59.301 47.619 0.00 0.00 0.00 3.55
254 255 2.079158 GATGGATGTATGCCGATGGTG 58.921 52.381 0.00 0.00 0.00 4.17
255 256 0.108396 TGGATGTATGCCGATGGTGG 59.892 55.000 0.00 0.00 0.00 4.61
264 265 4.758251 CGATGGTGGCTGTCGGCA 62.758 66.667 5.89 0.00 44.01 5.69
270 271 2.900273 TGGCTGTCGGCATAGACC 59.100 61.111 5.89 0.00 44.01 3.85
271 272 1.685765 TGGCTGTCGGCATAGACCT 60.686 57.895 5.89 0.00 44.01 3.85
272 273 0.396556 TGGCTGTCGGCATAGACCTA 60.397 55.000 5.89 0.00 44.01 3.08
273 274 0.315568 GGCTGTCGGCATAGACCTAG 59.684 60.000 5.89 0.00 44.01 3.02
274 275 0.315568 GCTGTCGGCATAGACCTAGG 59.684 60.000 7.41 7.41 40.26 3.02
275 276 0.315568 CTGTCGGCATAGACCTAGGC 59.684 60.000 9.30 5.23 41.60 3.93
280 281 1.286260 GCATAGACCTAGGCCGACG 59.714 63.158 9.30 0.00 36.92 5.12
281 282 1.957562 CATAGACCTAGGCCGACGG 59.042 63.158 10.29 10.29 0.00 4.79
282 283 1.228490 ATAGACCTAGGCCGACGGG 60.228 63.158 17.22 0.14 0.00 5.28
283 284 2.004408 ATAGACCTAGGCCGACGGGT 62.004 60.000 17.22 3.97 34.97 5.28
284 285 2.215451 TAGACCTAGGCCGACGGGTT 62.215 60.000 17.22 0.00 34.97 4.11
285 286 2.605601 ACCTAGGCCGACGGGTTT 60.606 61.111 17.22 0.00 34.97 3.27
286 287 2.125269 CCTAGGCCGACGGGTTTG 60.125 66.667 17.22 0.00 34.97 2.93
287 288 2.125269 CTAGGCCGACGGGTTTGG 60.125 66.667 17.22 0.00 34.97 3.28
288 289 3.675619 CTAGGCCGACGGGTTTGGG 62.676 68.421 17.22 0.00 34.97 4.12
293 294 3.708544 CGACGGGTTTGGGGCCTA 61.709 66.667 0.84 0.00 0.00 3.93
294 295 3.004090 GACGGGTTTGGGGCCTAT 58.996 61.111 0.84 0.00 0.00 2.57
295 296 1.453197 GACGGGTTTGGGGCCTATG 60.453 63.158 0.84 0.00 0.00 2.23
296 297 2.123897 CGGGTTTGGGGCCTATGG 60.124 66.667 0.84 0.00 0.00 2.74
324 325 4.570663 CGACCGGCGGCTTAGAGG 62.571 72.222 28.71 2.39 36.03 3.69
325 326 4.222847 GACCGGCGGCTTAGAGGG 62.223 72.222 28.71 1.56 0.00 4.30
329 330 4.554036 GGCGGCTTAGAGGGGCAG 62.554 72.222 0.00 0.00 0.00 4.85
330 331 3.787001 GCGGCTTAGAGGGGCAGT 61.787 66.667 0.00 0.00 0.00 4.40
331 332 2.501610 CGGCTTAGAGGGGCAGTC 59.498 66.667 0.00 0.00 0.00 3.51
332 333 2.911928 GGCTTAGAGGGGCAGTCC 59.088 66.667 0.00 0.00 0.00 3.85
333 334 2.501610 GCTTAGAGGGGCAGTCCG 59.498 66.667 0.00 0.00 36.01 4.79
334 335 3.095347 GCTTAGAGGGGCAGTCCGG 62.095 68.421 0.00 0.00 36.01 5.14
335 336 1.686110 CTTAGAGGGGCAGTCCGGT 60.686 63.158 0.00 0.00 36.01 5.28
336 337 0.396695 CTTAGAGGGGCAGTCCGGTA 60.397 60.000 0.00 0.00 36.01 4.02
337 338 0.396695 TTAGAGGGGCAGTCCGGTAG 60.397 60.000 0.00 0.00 36.01 3.18
338 339 1.578215 TAGAGGGGCAGTCCGGTAGT 61.578 60.000 0.00 0.00 36.01 2.73
339 340 2.683933 AGGGGCAGTCCGGTAGTG 60.684 66.667 0.00 2.72 36.01 2.74
340 341 3.001406 GGGGCAGTCCGGTAGTGT 61.001 66.667 0.00 0.00 36.01 3.55
341 342 2.590114 GGGGCAGTCCGGTAGTGTT 61.590 63.158 0.00 0.00 36.01 3.32
342 343 1.375523 GGGCAGTCCGGTAGTGTTG 60.376 63.158 0.00 0.00 0.00 3.33
343 344 1.370064 GGCAGTCCGGTAGTGTTGT 59.630 57.895 0.00 0.00 0.00 3.32
344 345 0.604578 GGCAGTCCGGTAGTGTTGTA 59.395 55.000 0.00 0.00 0.00 2.41
345 346 1.403780 GGCAGTCCGGTAGTGTTGTAG 60.404 57.143 0.00 0.00 0.00 2.74
346 347 1.403780 GCAGTCCGGTAGTGTTGTAGG 60.404 57.143 0.00 0.00 0.00 3.18
347 348 2.165167 CAGTCCGGTAGTGTTGTAGGA 58.835 52.381 0.00 0.00 0.00 2.94
348 349 2.758979 CAGTCCGGTAGTGTTGTAGGAT 59.241 50.000 0.00 0.00 0.00 3.24
349 350 3.194968 CAGTCCGGTAGTGTTGTAGGATT 59.805 47.826 0.00 0.00 0.00 3.01
350 351 3.836562 AGTCCGGTAGTGTTGTAGGATTT 59.163 43.478 0.00 0.00 0.00 2.17
351 352 5.018809 AGTCCGGTAGTGTTGTAGGATTTA 58.981 41.667 0.00 0.00 0.00 1.40
352 353 5.659971 AGTCCGGTAGTGTTGTAGGATTTAT 59.340 40.000 0.00 0.00 0.00 1.40
353 354 5.981915 GTCCGGTAGTGTTGTAGGATTTATC 59.018 44.000 0.00 0.00 0.00 1.75
354 355 5.657745 TCCGGTAGTGTTGTAGGATTTATCA 59.342 40.000 0.00 0.00 0.00 2.15
355 356 5.983720 CCGGTAGTGTTGTAGGATTTATCAG 59.016 44.000 0.00 0.00 0.00 2.90
356 357 5.983720 CGGTAGTGTTGTAGGATTTATCAGG 59.016 44.000 0.00 0.00 0.00 3.86
357 358 6.289064 GGTAGTGTTGTAGGATTTATCAGGG 58.711 44.000 0.00 0.00 0.00 4.45
358 359 6.126854 GGTAGTGTTGTAGGATTTATCAGGGT 60.127 42.308 0.00 0.00 0.00 4.34
359 360 6.388619 AGTGTTGTAGGATTTATCAGGGTT 57.611 37.500 0.00 0.00 0.00 4.11
360 361 7.504926 AGTGTTGTAGGATTTATCAGGGTTA 57.495 36.000 0.00 0.00 0.00 2.85
361 362 8.102484 AGTGTTGTAGGATTTATCAGGGTTAT 57.898 34.615 0.00 0.00 0.00 1.89
362 363 7.993183 AGTGTTGTAGGATTTATCAGGGTTATG 59.007 37.037 0.00 0.00 0.00 1.90
363 364 6.770785 TGTTGTAGGATTTATCAGGGTTATGC 59.229 38.462 0.00 0.00 0.00 3.14
364 365 6.763715 TGTAGGATTTATCAGGGTTATGCT 57.236 37.500 0.00 0.00 0.00 3.79
365 366 6.533730 TGTAGGATTTATCAGGGTTATGCTG 58.466 40.000 0.00 0.00 0.00 4.41
366 367 4.990526 AGGATTTATCAGGGTTATGCTGG 58.009 43.478 0.00 0.00 0.00 4.85
367 368 4.416848 AGGATTTATCAGGGTTATGCTGGT 59.583 41.667 0.00 0.00 0.00 4.00
368 369 5.103515 AGGATTTATCAGGGTTATGCTGGTT 60.104 40.000 0.00 0.00 0.00 3.67
369 370 5.010012 GGATTTATCAGGGTTATGCTGGTTG 59.990 44.000 0.00 0.00 0.00 3.77
370 371 2.442236 ATCAGGGTTATGCTGGTTGG 57.558 50.000 0.00 0.00 0.00 3.77
371 372 0.331278 TCAGGGTTATGCTGGTTGGG 59.669 55.000 0.00 0.00 0.00 4.12
372 373 0.684153 CAGGGTTATGCTGGTTGGGG 60.684 60.000 0.00 0.00 0.00 4.96
373 374 2.058001 GGGTTATGCTGGTTGGGGC 61.058 63.158 0.00 0.00 0.00 5.80
374 375 2.414785 GGTTATGCTGGTTGGGGCG 61.415 63.158 0.00 0.00 0.00 6.13
375 376 2.753849 TTATGCTGGTTGGGGCGC 60.754 61.111 0.00 0.00 0.00 6.53
376 377 3.280938 TTATGCTGGTTGGGGCGCT 62.281 57.895 7.64 0.00 0.00 5.92
377 378 3.993614 TATGCTGGTTGGGGCGCTG 62.994 63.158 7.64 0.00 0.00 5.18
380 381 4.974721 CTGGTTGGGGCGCTGGTT 62.975 66.667 7.64 0.00 0.00 3.67
383 384 3.977244 GTTGGGGCGCTGGTTGTG 61.977 66.667 7.64 0.00 0.00 3.33
391 392 4.120331 GCTGGTTGTGGCGGCATC 62.120 66.667 17.19 9.81 0.00 3.91
392 393 2.360350 CTGGTTGTGGCGGCATCT 60.360 61.111 17.19 0.00 0.00 2.90
393 394 2.672651 TGGTTGTGGCGGCATCTG 60.673 61.111 17.19 0.00 0.00 2.90
394 395 2.672996 GGTTGTGGCGGCATCTGT 60.673 61.111 17.19 0.00 0.00 3.41
395 396 2.268076 GGTTGTGGCGGCATCTGTT 61.268 57.895 17.19 0.00 0.00 3.16
396 397 0.958382 GGTTGTGGCGGCATCTGTTA 60.958 55.000 17.19 0.00 0.00 2.41
397 398 0.878416 GTTGTGGCGGCATCTGTTAA 59.122 50.000 17.19 1.37 0.00 2.01
398 399 1.268352 GTTGTGGCGGCATCTGTTAAA 59.732 47.619 17.19 0.00 0.00 1.52
399 400 0.878416 TGTGGCGGCATCTGTTAAAC 59.122 50.000 17.19 0.00 0.00 2.01
400 401 0.170339 GTGGCGGCATCTGTTAAACC 59.830 55.000 17.19 0.00 0.00 3.27
401 402 0.037590 TGGCGGCATCTGTTAAACCT 59.962 50.000 7.97 0.00 0.00 3.50
402 403 1.279558 TGGCGGCATCTGTTAAACCTA 59.720 47.619 7.97 0.00 0.00 3.08
403 404 1.940613 GGCGGCATCTGTTAAACCTAG 59.059 52.381 3.07 0.00 0.00 3.02
404 405 2.629051 GCGGCATCTGTTAAACCTAGT 58.371 47.619 0.00 0.00 0.00 2.57
405 406 2.608090 GCGGCATCTGTTAAACCTAGTC 59.392 50.000 0.00 0.00 0.00 2.59
406 407 3.857052 CGGCATCTGTTAAACCTAGTCA 58.143 45.455 0.00 0.00 0.00 3.41
407 408 3.865745 CGGCATCTGTTAAACCTAGTCAG 59.134 47.826 0.00 0.00 0.00 3.51
408 409 4.620803 CGGCATCTGTTAAACCTAGTCAGT 60.621 45.833 0.00 0.00 0.00 3.41
409 410 5.393787 CGGCATCTGTTAAACCTAGTCAGTA 60.394 44.000 0.00 0.00 0.00 2.74
410 411 6.583562 GGCATCTGTTAAACCTAGTCAGTAT 58.416 40.000 0.00 0.00 0.00 2.12
411 412 6.702282 GGCATCTGTTAAACCTAGTCAGTATC 59.298 42.308 0.00 0.00 0.00 2.24
412 413 7.418025 GGCATCTGTTAAACCTAGTCAGTATCT 60.418 40.741 0.00 0.00 0.00 1.98
413 414 7.982354 GCATCTGTTAAACCTAGTCAGTATCTT 59.018 37.037 0.00 0.00 0.00 2.40
414 415 9.307121 CATCTGTTAAACCTAGTCAGTATCTTG 57.693 37.037 0.00 0.00 0.00 3.02
415 416 7.837863 TCTGTTAAACCTAGTCAGTATCTTGG 58.162 38.462 0.00 0.00 34.83 3.61
416 417 7.453752 TCTGTTAAACCTAGTCAGTATCTTGGT 59.546 37.037 0.00 0.00 41.27 3.67
417 418 7.970102 TGTTAAACCTAGTCAGTATCTTGGTT 58.030 34.615 6.11 6.11 46.69 3.67
418 419 7.876068 TGTTAAACCTAGTCAGTATCTTGGTTG 59.124 37.037 11.11 0.00 45.07 3.77
419 420 5.422214 AACCTAGTCAGTATCTTGGTTGG 57.578 43.478 9.97 0.00 44.51 3.77
420 421 3.775316 ACCTAGTCAGTATCTTGGTTGGG 59.225 47.826 0.00 0.00 37.67 4.12
421 422 3.775316 CCTAGTCAGTATCTTGGTTGGGT 59.225 47.826 0.00 0.00 0.00 4.51
422 423 4.960469 CCTAGTCAGTATCTTGGTTGGGTA 59.040 45.833 0.00 0.00 0.00 3.69
423 424 5.069251 CCTAGTCAGTATCTTGGTTGGGTAG 59.931 48.000 0.00 0.00 0.00 3.18
424 425 4.426704 AGTCAGTATCTTGGTTGGGTAGT 58.573 43.478 0.00 0.00 0.00 2.73
425 426 4.466726 AGTCAGTATCTTGGTTGGGTAGTC 59.533 45.833 0.00 0.00 0.00 2.59
426 427 4.466726 GTCAGTATCTTGGTTGGGTAGTCT 59.533 45.833 0.00 0.00 0.00 3.24
427 428 4.466370 TCAGTATCTTGGTTGGGTAGTCTG 59.534 45.833 0.00 0.00 0.00 3.51
428 429 2.789409 ATCTTGGTTGGGTAGTCTGC 57.211 50.000 0.00 0.00 0.00 4.26
429 430 1.429930 TCTTGGTTGGGTAGTCTGCA 58.570 50.000 0.00 0.00 0.00 4.41
430 431 1.071699 TCTTGGTTGGGTAGTCTGCAC 59.928 52.381 0.00 0.00 0.00 4.57
431 432 1.072331 CTTGGTTGGGTAGTCTGCACT 59.928 52.381 0.00 0.00 36.55 4.40
432 433 1.136828 TGGTTGGGTAGTCTGCACTT 58.863 50.000 0.00 0.00 33.62 3.16
433 434 1.493022 TGGTTGGGTAGTCTGCACTTT 59.507 47.619 0.00 0.00 33.62 2.66
434 435 2.706723 TGGTTGGGTAGTCTGCACTTTA 59.293 45.455 0.00 0.00 33.62 1.85
435 436 3.244422 TGGTTGGGTAGTCTGCACTTTAG 60.244 47.826 0.00 0.00 33.62 1.85
436 437 3.007614 GGTTGGGTAGTCTGCACTTTAGA 59.992 47.826 0.00 0.00 33.62 2.10
437 438 4.246458 GTTGGGTAGTCTGCACTTTAGAG 58.754 47.826 0.00 0.00 33.62 2.43
438 439 2.832129 TGGGTAGTCTGCACTTTAGAGG 59.168 50.000 0.00 0.00 33.62 3.69
439 440 3.097614 GGGTAGTCTGCACTTTAGAGGA 58.902 50.000 0.00 0.00 33.62 3.71
440 441 3.131400 GGGTAGTCTGCACTTTAGAGGAG 59.869 52.174 0.00 0.00 33.62 3.69
441 442 3.131400 GGTAGTCTGCACTTTAGAGGAGG 59.869 52.174 0.00 0.00 33.62 4.30
442 443 2.183679 AGTCTGCACTTTAGAGGAGGG 58.816 52.381 0.00 0.00 0.00 4.30
443 444 2.180276 GTCTGCACTTTAGAGGAGGGA 58.820 52.381 0.00 0.00 0.00 4.20
444 445 2.167487 GTCTGCACTTTAGAGGAGGGAG 59.833 54.545 0.00 0.00 0.00 4.30
445 446 2.183679 CTGCACTTTAGAGGAGGGAGT 58.816 52.381 0.00 0.00 0.00 3.85
446 447 1.902508 TGCACTTTAGAGGAGGGAGTG 59.097 52.381 0.00 0.00 40.40 3.51
447 448 1.903183 GCACTTTAGAGGAGGGAGTGT 59.097 52.381 0.00 0.00 39.79 3.55
448 449 2.354203 GCACTTTAGAGGAGGGAGTGTG 60.354 54.545 0.00 0.00 39.79 3.82
449 450 1.903183 ACTTTAGAGGAGGGAGTGTGC 59.097 52.381 0.00 0.00 0.00 4.57
450 451 1.902508 CTTTAGAGGAGGGAGTGTGCA 59.097 52.381 0.00 0.00 0.00 4.57
451 452 1.267121 TTAGAGGAGGGAGTGTGCAC 58.733 55.000 10.75 10.75 0.00 4.57
452 453 0.614979 TAGAGGAGGGAGTGTGCACC 60.615 60.000 15.69 5.76 0.00 5.01
453 454 3.302347 GAGGAGGGAGTGTGCACCG 62.302 68.421 15.69 0.00 0.00 4.94
454 455 3.626924 GGAGGGAGTGTGCACCGT 61.627 66.667 15.69 0.00 0.00 4.83
455 456 2.280552 GGAGGGAGTGTGCACCGTA 61.281 63.158 15.69 0.00 0.00 4.02
456 457 1.215647 GAGGGAGTGTGCACCGTAG 59.784 63.158 15.69 0.00 0.00 3.51
471 472 1.725641 CGTAGGATTTGCTGCTGTGA 58.274 50.000 0.00 0.00 0.00 3.58
472 473 2.283298 CGTAGGATTTGCTGCTGTGAT 58.717 47.619 0.00 0.00 0.00 3.06
473 474 2.031314 CGTAGGATTTGCTGCTGTGATG 59.969 50.000 0.00 0.00 0.00 3.07
474 475 2.211250 AGGATTTGCTGCTGTGATGT 57.789 45.000 0.00 0.00 0.00 3.06
475 476 3.354948 AGGATTTGCTGCTGTGATGTA 57.645 42.857 0.00 0.00 0.00 2.29
476 477 3.689347 AGGATTTGCTGCTGTGATGTAA 58.311 40.909 0.00 0.00 0.00 2.41
477 478 3.693085 AGGATTTGCTGCTGTGATGTAAG 59.307 43.478 0.00 0.00 0.00 2.34
478 479 2.995466 TTTGCTGCTGTGATGTAAGC 57.005 45.000 0.00 0.00 39.96 3.09
479 480 2.189594 TTGCTGCTGTGATGTAAGCT 57.810 45.000 0.00 0.00 40.21 3.74
480 481 1.445871 TGCTGCTGTGATGTAAGCTG 58.554 50.000 0.00 0.00 40.21 4.24
481 482 0.731417 GCTGCTGTGATGTAAGCTGG 59.269 55.000 0.00 0.00 40.21 4.85
482 483 0.731417 CTGCTGTGATGTAAGCTGGC 59.269 55.000 0.00 0.00 40.21 4.85
483 484 0.036590 TGCTGTGATGTAAGCTGGCA 59.963 50.000 0.00 0.00 40.21 4.92
484 485 1.167851 GCTGTGATGTAAGCTGGCAA 58.832 50.000 0.00 0.00 36.47 4.52
485 486 1.747355 GCTGTGATGTAAGCTGGCAAT 59.253 47.619 0.00 0.00 36.47 3.56
486 487 2.945008 GCTGTGATGTAAGCTGGCAATA 59.055 45.455 0.00 0.00 36.47 1.90
487 488 3.003068 GCTGTGATGTAAGCTGGCAATAG 59.997 47.826 0.00 0.00 36.47 1.73
488 489 2.945008 TGTGATGTAAGCTGGCAATAGC 59.055 45.455 0.00 0.00 44.01 2.97
498 499 3.706140 GCAATAGCCTCGTGTCGG 58.294 61.111 0.00 0.00 33.58 4.79
499 500 1.153628 GCAATAGCCTCGTGTCGGT 60.154 57.895 0.00 0.00 33.58 4.69
500 501 0.739813 GCAATAGCCTCGTGTCGGTT 60.740 55.000 0.00 0.00 33.58 4.44
501 502 0.999406 CAATAGCCTCGTGTCGGTTG 59.001 55.000 0.00 0.00 0.00 3.77
502 503 0.606604 AATAGCCTCGTGTCGGTTGT 59.393 50.000 0.00 0.00 0.00 3.32
503 504 0.108804 ATAGCCTCGTGTCGGTTGTG 60.109 55.000 0.00 0.00 0.00 3.33
504 505 1.174078 TAGCCTCGTGTCGGTTGTGA 61.174 55.000 0.00 0.00 0.00 3.58
505 506 2.022129 GCCTCGTGTCGGTTGTGAG 61.022 63.158 0.00 0.00 0.00 3.51
506 507 1.658114 CCTCGTGTCGGTTGTGAGA 59.342 57.895 0.00 0.00 0.00 3.27
507 508 0.663568 CCTCGTGTCGGTTGTGAGAC 60.664 60.000 0.00 0.00 37.85 3.36
508 509 0.311165 CTCGTGTCGGTTGTGAGACT 59.689 55.000 0.00 0.00 38.16 3.24
509 510 0.742505 TCGTGTCGGTTGTGAGACTT 59.257 50.000 0.00 0.00 38.16 3.01
510 511 0.852777 CGTGTCGGTTGTGAGACTTG 59.147 55.000 0.00 0.00 38.16 3.16
511 512 1.217882 GTGTCGGTTGTGAGACTTGG 58.782 55.000 0.00 0.00 38.16 3.61
512 513 0.828022 TGTCGGTTGTGAGACTTGGT 59.172 50.000 0.00 0.00 38.16 3.67
513 514 1.217882 GTCGGTTGTGAGACTTGGTG 58.782 55.000 0.00 0.00 34.74 4.17
514 515 1.116308 TCGGTTGTGAGACTTGGTGA 58.884 50.000 0.00 0.00 0.00 4.02
515 516 1.691976 TCGGTTGTGAGACTTGGTGAT 59.308 47.619 0.00 0.00 0.00 3.06
516 517 2.104111 TCGGTTGTGAGACTTGGTGATT 59.896 45.455 0.00 0.00 0.00 2.57
517 518 2.878406 CGGTTGTGAGACTTGGTGATTT 59.122 45.455 0.00 0.00 0.00 2.17
518 519 3.058914 CGGTTGTGAGACTTGGTGATTTC 60.059 47.826 0.00 0.00 0.00 2.17
519 520 4.137543 GGTTGTGAGACTTGGTGATTTCT 58.862 43.478 0.00 0.00 0.00 2.52
520 521 5.305585 GGTTGTGAGACTTGGTGATTTCTA 58.694 41.667 0.00 0.00 0.00 2.10
521 522 5.763204 GGTTGTGAGACTTGGTGATTTCTAA 59.237 40.000 0.00 0.00 0.00 2.10
522 523 6.431234 GGTTGTGAGACTTGGTGATTTCTAAT 59.569 38.462 0.00 0.00 0.00 1.73
523 524 7.606456 GGTTGTGAGACTTGGTGATTTCTAATA 59.394 37.037 0.00 0.00 0.00 0.98
524 525 8.999431 GTTGTGAGACTTGGTGATTTCTAATAA 58.001 33.333 0.00 0.00 0.00 1.40
525 526 9.739276 TTGTGAGACTTGGTGATTTCTAATAAT 57.261 29.630 0.00 0.00 0.00 1.28
526 527 9.166173 TGTGAGACTTGGTGATTTCTAATAATG 57.834 33.333 0.00 0.00 0.00 1.90
527 528 9.383519 GTGAGACTTGGTGATTTCTAATAATGA 57.616 33.333 0.00 0.00 0.00 2.57
528 529 9.958180 TGAGACTTGGTGATTTCTAATAATGAA 57.042 29.630 0.00 0.00 0.00 2.57
535 536 9.402320 TGGTGATTTCTAATAATGAAAATCGGA 57.598 29.630 0.00 0.00 37.05 4.55
536 537 9.884465 GGTGATTTCTAATAATGAAAATCGGAG 57.116 33.333 0.00 0.00 37.05 4.63
541 542 9.899661 TTTCTAATAATGAAAATCGGAGAGGAA 57.100 29.630 0.00 0.00 43.63 3.36
542 543 9.899661 TTCTAATAATGAAAATCGGAGAGGAAA 57.100 29.630 0.00 0.00 43.63 3.13
543 544 9.326413 TCTAATAATGAAAATCGGAGAGGAAAC 57.674 33.333 0.00 0.00 43.63 2.78
544 545 9.331282 CTAATAATGAAAATCGGAGAGGAAACT 57.669 33.333 0.00 0.00 43.63 2.66
561 562 7.703058 AGGAAACTCTCTTTGTCAAAAAGAA 57.297 32.000 3.05 0.00 36.01 2.52
562 563 8.122472 AGGAAACTCTCTTTGTCAAAAAGAAA 57.878 30.769 3.05 0.00 36.01 2.52
563 564 8.585018 AGGAAACTCTCTTTGTCAAAAAGAAAA 58.415 29.630 3.05 0.00 36.01 2.29
564 565 9.203421 GGAAACTCTCTTTGTCAAAAAGAAAAA 57.797 29.630 3.05 0.00 36.01 1.94
597 598 3.106054 ACCAGTCAGAGCTCATCATTCT 58.894 45.455 17.77 2.49 0.00 2.40
607 608 2.606725 GCTCATCATTCTTGTGACGGAG 59.393 50.000 0.00 0.00 36.61 4.63
618 619 2.053282 GTGACGGAGTGACAGACTTC 57.947 55.000 0.00 0.00 45.95 3.01
622 624 6.745200 GTGACGGAGTGACAGACTTCACAA 62.745 50.000 15.54 0.00 45.95 3.33
628 630 1.134431 TGACAGACTTCACAAGCTGCA 60.134 47.619 1.02 0.00 36.65 4.41
629 631 2.149578 GACAGACTTCACAAGCTGCAT 58.850 47.619 1.02 0.00 36.65 3.96
642 644 2.917933 AGCTGCATAACCGCAAAGATA 58.082 42.857 1.02 0.00 42.45 1.98
764 1390 4.731612 AGCGCTGTGACGAGGCAG 62.732 66.667 10.39 0.00 35.93 4.85
832 1464 4.580044 GCGACGACGGCATGCATG 62.580 66.667 22.70 22.70 40.15 4.06
928 1583 0.586319 AACGTTTCAGTGCATCCACG 59.414 50.000 0.00 0.00 46.62 4.94
947 1602 1.310904 GAGGTCTAGGACTAGGTGCG 58.689 60.000 6.52 0.00 34.06 5.34
1185 1859 2.680707 TACGGCATCGACACCCCA 60.681 61.111 0.00 0.00 40.11 4.96
1270 1944 1.009829 GACCTCGTGCATTCATGGAC 58.990 55.000 1.48 1.48 44.42 4.02
1281 1970 0.948623 TTCATGGACGCACTTCACCG 60.949 55.000 0.00 0.00 0.00 4.94
2297 3031 3.372349 CCATGAACCTCTCCACCATCATT 60.372 47.826 0.00 0.00 0.00 2.57
2309 3043 0.459899 CCATCATTCACCTCGACCGA 59.540 55.000 0.00 0.00 0.00 4.69
2330 3064 0.256464 ACCTCCACGACTAGCTAGCT 59.744 55.000 23.12 23.12 0.00 3.32
2331 3065 1.489649 ACCTCCACGACTAGCTAGCTA 59.510 52.381 22.85 22.85 0.00 3.32
2362 3096 1.462283 CATTCATCCATGATCCGTCGC 59.538 52.381 0.00 0.00 36.56 5.19
2374 3108 4.544689 CGTCGCTCAGCCTCCTCG 62.545 72.222 0.00 0.00 0.00 4.63
2405 3139 4.508461 TCATTTGCAGTTCCATCACTTG 57.492 40.909 0.00 0.00 0.00 3.16
2409 3143 1.610038 TGCAGTTCCATCACTTGCTTG 59.390 47.619 0.00 0.00 0.00 4.01
2410 3144 1.881973 GCAGTTCCATCACTTGCTTGA 59.118 47.619 0.00 0.00 0.00 3.02
2411 3145 2.490903 GCAGTTCCATCACTTGCTTGAT 59.509 45.455 0.00 0.00 36.62 2.57
2423 3157 6.151691 TCACTTGCTTGATGCTTTTTCATAC 58.848 36.000 0.00 0.00 43.37 2.39
2432 3166 5.824429 GATGCTTTTTCATACATAGCAGCA 58.176 37.500 0.00 0.00 44.93 4.41
2450 3184 3.192001 CAGCAGCAGCCTTCTTGATTTTA 59.808 43.478 0.00 0.00 43.56 1.52
2590 3352 2.092103 TGGTTTGCTTGTGAGGTAACCT 60.092 45.455 0.00 0.00 36.76 3.50
2591 3353 2.956333 GGTTTGCTTGTGAGGTAACCTT 59.044 45.455 0.00 0.00 31.76 3.50
2594 3482 4.967084 TTGCTTGTGAGGTAACCTTCTA 57.033 40.909 0.00 0.00 31.76 2.10
2597 3485 4.021368 TGCTTGTGAGGTAACCTTCTACTC 60.021 45.833 0.00 0.00 31.76 2.59
2606 3494 5.187967 AGGTAACCTTCTACTCCTTGTGATG 59.812 44.000 0.00 0.00 37.17 3.07
2612 3500 5.814705 CCTTCTACTCCTTGTGATGAATGTC 59.185 44.000 0.00 0.00 0.00 3.06
2617 3505 2.938451 TCCTTGTGATGAATGTCGATGC 59.062 45.455 0.00 0.00 0.00 3.91
2624 3512 4.746611 GTGATGAATGTCGATGCTCATGTA 59.253 41.667 9.88 0.00 0.00 2.29
2625 3513 5.407691 GTGATGAATGTCGATGCTCATGTAT 59.592 40.000 9.88 0.00 0.00 2.29
2626 3514 5.993441 TGATGAATGTCGATGCTCATGTATT 59.007 36.000 9.88 0.00 0.00 1.89
2627 3515 5.662211 TGAATGTCGATGCTCATGTATTG 57.338 39.130 0.00 0.00 0.00 1.90
2628 3516 5.118286 TGAATGTCGATGCTCATGTATTGT 58.882 37.500 0.00 0.00 0.00 2.71
2636 3524 6.067039 CGATGCTCATGTATTGTATTGAACG 58.933 40.000 0.00 0.00 0.00 3.95
2651 3544 4.598406 TTGAACGATGGATGTCGATTTG 57.402 40.909 3.09 0.00 44.06 2.32
2659 3552 3.457234 TGGATGTCGATTTGGATTCTCG 58.543 45.455 0.00 0.00 0.00 4.04
2729 3880 6.738832 TTAATCTGACGAGATATAGACGGG 57.261 41.667 0.00 0.00 38.03 5.28
2731 3882 2.152016 CTGACGAGATATAGACGGGCA 58.848 52.381 0.00 0.00 0.00 5.36
2751 3902 3.639538 CAGAAGTGCTACTACAACACGT 58.360 45.455 0.00 0.00 39.31 4.49
2768 3925 2.803956 CACGTACCGGAACAAAGTCATT 59.196 45.455 9.46 0.00 0.00 2.57
2783 4012 3.384668 AGTCATTTGGCTATCGACGATG 58.615 45.455 20.42 11.07 0.00 3.84
2795 4024 1.153289 GACGATGAGGCTGGCATGT 60.153 57.895 3.38 0.00 0.00 3.21
2806 4035 1.579698 CTGGCATGTGCTAGTGCTAG 58.420 55.000 9.87 2.70 43.52 3.42
2807 4036 1.194218 TGGCATGTGCTAGTGCTAGA 58.806 50.000 10.17 0.00 41.04 2.43
2808 4037 1.554617 TGGCATGTGCTAGTGCTAGAA 59.445 47.619 10.17 0.00 41.04 2.10
2833 4062 1.956297 ACTAGTCGCGAGCAGTAGAT 58.044 50.000 18.27 0.00 0.00 1.98
2848 4077 1.271102 GTAGATCGCATGGTCTCCCTC 59.729 57.143 0.00 0.00 0.00 4.30
2849 4078 0.105760 AGATCGCATGGTCTCCCTCT 60.106 55.000 0.00 0.00 0.00 3.69
2850 4079 0.316841 GATCGCATGGTCTCCCTCTC 59.683 60.000 0.00 0.00 0.00 3.20
2851 4080 1.118356 ATCGCATGGTCTCCCTCTCC 61.118 60.000 0.00 0.00 0.00 3.71
2852 4081 1.760086 CGCATGGTCTCCCTCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
2853 4082 1.828768 GCATGGTCTCCCTCTCCTG 59.171 63.158 0.00 0.00 0.00 3.86
2854 4083 0.689080 GCATGGTCTCCCTCTCCTGA 60.689 60.000 0.00 0.00 0.00 3.86
2855 4084 1.412079 CATGGTCTCCCTCTCCTGAG 58.588 60.000 0.00 0.00 39.92 3.35
2875 4104 3.926616 AGTCCTGATTCGTAAACAGTGG 58.073 45.455 0.00 0.00 0.00 4.00
2933 4162 1.682740 TGGGTCCCACGTTTTCTTTC 58.317 50.000 6.47 0.00 0.00 2.62
2950 5718 5.652744 TCTTTCGACAACTTTTGCTACTC 57.347 39.130 0.00 0.00 0.00 2.59
2951 5719 5.113383 TCTTTCGACAACTTTTGCTACTCA 58.887 37.500 0.00 0.00 0.00 3.41
2952 5720 5.583061 TCTTTCGACAACTTTTGCTACTCAA 59.417 36.000 0.00 0.00 0.00 3.02
2953 5721 6.260050 TCTTTCGACAACTTTTGCTACTCAAT 59.740 34.615 0.00 0.00 34.12 2.57
2967 5735 5.997129 TGCTACTCAATCATCAGTCAAAACA 59.003 36.000 0.00 0.00 0.00 2.83
2968 5736 6.656270 TGCTACTCAATCATCAGTCAAAACAT 59.344 34.615 0.00 0.00 0.00 2.71
2969 5737 6.965500 GCTACTCAATCATCAGTCAAAACATG 59.035 38.462 0.00 0.00 0.00 3.21
2970 5738 6.889301 ACTCAATCATCAGTCAAAACATGT 57.111 33.333 0.00 0.00 0.00 3.21
2973 5741 6.448852 TCAATCATCAGTCAAAACATGTTGG 58.551 36.000 12.82 8.00 0.00 3.77
2974 5742 6.040729 TCAATCATCAGTCAAAACATGTTGGT 59.959 34.615 12.82 0.00 0.00 3.67
2975 5743 5.185668 TCATCAGTCAAAACATGTTGGTG 57.814 39.130 12.82 13.42 31.49 4.17
3007 5785 0.956410 TTGCTGCCAAATTGCCATGC 60.956 50.000 0.00 0.00 0.00 4.06
3008 5786 2.110352 GCTGCCAAATTGCCATGCC 61.110 57.895 0.00 0.00 0.00 4.40
3010 5788 0.107410 CTGCCAAATTGCCATGCCAT 60.107 50.000 0.00 0.00 0.00 4.40
3011 5789 0.393132 TGCCAAATTGCCATGCCATG 60.393 50.000 0.00 0.00 0.00 3.66
3012 5790 0.107606 GCCAAATTGCCATGCCATGA 60.108 50.000 6.18 0.00 0.00 3.07
3013 5791 1.679336 GCCAAATTGCCATGCCATGAA 60.679 47.619 6.18 0.00 0.00 2.57
3014 5792 2.712709 CCAAATTGCCATGCCATGAAA 58.287 42.857 6.18 0.64 0.00 2.69
3015 5793 3.082548 CCAAATTGCCATGCCATGAAAA 58.917 40.909 6.18 0.26 0.00 2.29
3016 5794 3.506455 CCAAATTGCCATGCCATGAAAAA 59.494 39.130 6.18 0.00 0.00 1.94
3017 5795 4.158764 CCAAATTGCCATGCCATGAAAAAT 59.841 37.500 6.18 0.26 0.00 1.82
3057 5835 9.125026 AGCAAGTTTCTCAAGAATTAAAGAAGA 57.875 29.630 0.00 0.00 32.74 2.87
3058 5836 9.392021 GCAAGTTTCTCAAGAATTAAAGAAGAG 57.608 33.333 0.00 0.00 32.74 2.85
3167 5958 3.795977 TTCCGGTGTTCCCTCCCCA 62.796 63.158 0.00 0.00 0.00 4.96
3197 6013 2.435069 ACTCTGAGCTGAGATGGATTGG 59.565 50.000 2.45 0.00 37.50 3.16
3261 6081 0.252197 GATTGCCACGGGGAGTTACT 59.748 55.000 8.67 0.00 35.59 2.24
3262 6082 0.035439 ATTGCCACGGGGAGTTACTG 60.035 55.000 8.67 0.00 35.59 2.74
3270 6090 2.663196 GGAGTTACTGCTGCCGGT 59.337 61.111 1.90 0.00 0.00 5.28
3294 6114 6.804295 GTGAGATATTCCTAGTGCGTAATGAG 59.196 42.308 0.00 0.00 0.00 2.90
3319 6139 1.621317 TGCCGGTGAGATGTTCTTGTA 59.379 47.619 1.90 0.00 0.00 2.41
3329 6149 5.187772 TGAGATGTTCTTGTATACCTGCAGT 59.812 40.000 13.81 3.45 0.00 4.40
3371 6191 2.394930 TACGGCTGTACATTGCATGT 57.605 45.000 0.00 8.79 46.92 3.21
3381 6201 2.459644 ACATTGCATGTTGGTGCCTAT 58.540 42.857 0.00 0.00 44.43 2.57
3384 6204 4.650588 ACATTGCATGTTGGTGCCTATTAT 59.349 37.500 0.00 0.00 44.43 1.28
3385 6205 5.832595 ACATTGCATGTTGGTGCCTATTATA 59.167 36.000 0.00 0.00 44.43 0.98
3386 6206 5.766150 TTGCATGTTGGTGCCTATTATAC 57.234 39.130 0.00 0.00 44.43 1.47
3387 6207 4.786425 TGCATGTTGGTGCCTATTATACA 58.214 39.130 0.00 0.00 44.43 2.29
3388 6208 4.821260 TGCATGTTGGTGCCTATTATACAG 59.179 41.667 0.00 0.00 44.43 2.74
3389 6209 4.320494 GCATGTTGGTGCCTATTATACAGC 60.320 45.833 0.00 0.00 39.18 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.793160 ATATGCCGGCGGATGAGCTG 62.793 60.000 33.44 0.00 42.86 4.24
4 5 2.513026 GATATGCCGGCGGATGAGCT 62.513 60.000 33.44 8.10 37.29 4.09
5 6 2.046892 ATATGCCGGCGGATGAGC 60.047 61.111 33.44 14.73 0.00 4.26
6 7 0.738762 CAGATATGCCGGCGGATGAG 60.739 60.000 33.44 7.96 0.00 2.90
7 8 1.293179 CAGATATGCCGGCGGATGA 59.707 57.895 33.44 13.81 0.00 2.92
8 9 1.004560 ACAGATATGCCGGCGGATG 60.005 57.895 33.44 18.58 0.00 3.51
9 10 1.004560 CACAGATATGCCGGCGGAT 60.005 57.895 33.44 21.66 0.00 4.18
10 11 2.421314 CACAGATATGCCGGCGGA 59.579 61.111 33.44 15.74 0.00 5.54
11 12 3.349006 GCACAGATATGCCGGCGG 61.349 66.667 24.35 24.35 39.86 6.13
17 18 0.179037 TCCTGGCAGCACAGATATGC 60.179 55.000 9.56 0.00 46.50 3.14
18 19 1.880271 CTCCTGGCAGCACAGATATG 58.120 55.000 9.56 0.00 40.97 1.78
19 20 0.108207 GCTCCTGGCAGCACAGATAT 59.892 55.000 9.56 0.00 40.97 1.63
20 21 0.979709 AGCTCCTGGCAGCACAGATA 60.980 55.000 9.56 0.94 42.40 1.98
21 22 2.254737 GAGCTCCTGGCAGCACAGAT 62.255 60.000 9.56 2.68 42.40 2.90
22 23 2.926779 AGCTCCTGGCAGCACAGA 60.927 61.111 9.56 0.00 42.40 3.41
23 24 2.436292 GAGCTCCTGGCAGCACAG 60.436 66.667 9.56 5.49 42.40 3.66
24 25 4.025858 GGAGCTCCTGGCAGCACA 62.026 66.667 26.25 0.00 42.40 4.57
25 26 4.792804 GGGAGCTCCTGGCAGCAC 62.793 72.222 31.36 9.17 42.40 4.40
27 28 4.486503 CTGGGAGCTCCTGGCAGC 62.487 72.222 31.36 14.67 44.79 5.25
28 29 4.486503 GCTGGGAGCTCCTGGCAG 62.487 72.222 31.36 27.83 44.79 4.85
30 31 4.039092 TTGCTGGGAGCTCCTGGC 62.039 66.667 31.36 30.49 42.97 4.85
31 32 2.045536 GTTGCTGGGAGCTCCTGG 60.046 66.667 31.36 23.34 42.97 4.45
32 33 1.376942 CAGTTGCTGGGAGCTCCTG 60.377 63.158 31.36 23.79 42.97 3.86
33 34 3.076092 CAGTTGCTGGGAGCTCCT 58.924 61.111 31.36 7.72 42.97 3.69
34 35 2.749441 GCAGTTGCTGGGAGCTCC 60.749 66.667 25.59 25.59 42.97 4.70
35 36 2.749441 GGCAGTTGCTGGGAGCTC 60.749 66.667 4.71 4.71 42.97 4.09
36 37 3.573229 TGGCAGTTGCTGGGAGCT 61.573 61.111 3.88 0.00 42.97 4.09
37 38 3.368571 GTGGCAGTTGCTGGGAGC 61.369 66.667 3.88 0.00 42.82 4.70
38 39 1.303888 ATGTGGCAGTTGCTGGGAG 60.304 57.895 3.88 0.00 41.70 4.30
39 40 1.604308 CATGTGGCAGTTGCTGGGA 60.604 57.895 3.88 0.00 41.70 4.37
40 41 2.642254 CCATGTGGCAGTTGCTGGG 61.642 63.158 3.88 0.00 41.70 4.45
41 42 2.967397 CCATGTGGCAGTTGCTGG 59.033 61.111 3.88 0.07 41.70 4.85
59 60 0.383491 CGACGACAAAGCAGCAACTG 60.383 55.000 0.00 0.00 34.12 3.16
60 61 0.810031 ACGACGACAAAGCAGCAACT 60.810 50.000 0.00 0.00 0.00 3.16
61 62 0.654472 CACGACGACAAAGCAGCAAC 60.654 55.000 0.00 0.00 0.00 4.17
62 63 1.087202 ACACGACGACAAAGCAGCAA 61.087 50.000 0.00 0.00 0.00 3.91
63 64 1.087202 AACACGACGACAAAGCAGCA 61.087 50.000 0.00 0.00 0.00 4.41
64 65 0.027586 AAACACGACGACAAAGCAGC 59.972 50.000 0.00 0.00 0.00 5.25
65 66 2.101125 CAAAACACGACGACAAAGCAG 58.899 47.619 0.00 0.00 0.00 4.24
66 67 1.732809 TCAAAACACGACGACAAAGCA 59.267 42.857 0.00 0.00 0.00 3.91
67 68 2.098870 GTCAAAACACGACGACAAAGC 58.901 47.619 0.00 0.00 0.00 3.51
75 76 1.083847 GACGCCGTCAAAACACGAC 60.084 57.895 13.23 0.00 42.69 4.34
76 77 2.578679 CGACGCCGTCAAAACACGA 61.579 57.895 18.40 0.00 42.69 4.35
77 78 2.128274 CGACGCCGTCAAAACACG 60.128 61.111 18.40 0.00 39.61 4.49
78 79 2.247267 CCGACGCCGTCAAAACAC 59.753 61.111 18.40 0.00 32.09 3.32
79 80 3.641986 GCCGACGCCGTCAAAACA 61.642 61.111 18.40 0.00 32.09 2.83
80 81 4.712873 CGCCGACGCCGTCAAAAC 62.713 66.667 18.40 2.01 32.09 2.43
97 98 0.893727 ATTTCCACCTGACGGCAACC 60.894 55.000 0.00 0.00 0.00 3.77
98 99 0.521735 GATTTCCACCTGACGGCAAC 59.478 55.000 0.00 0.00 0.00 4.17
99 100 0.109532 TGATTTCCACCTGACGGCAA 59.890 50.000 0.00 0.00 0.00 4.52
100 101 0.327924 ATGATTTCCACCTGACGGCA 59.672 50.000 0.00 0.00 0.00 5.69
101 102 1.133025 CAATGATTTCCACCTGACGGC 59.867 52.381 0.00 0.00 0.00 5.68
102 103 1.133025 GCAATGATTTCCACCTGACGG 59.867 52.381 0.00 0.00 0.00 4.79
103 104 1.133025 GGCAATGATTTCCACCTGACG 59.867 52.381 0.00 0.00 0.00 4.35
104 105 1.133025 CGGCAATGATTTCCACCTGAC 59.867 52.381 0.00 0.00 0.00 3.51
105 106 1.004161 TCGGCAATGATTTCCACCTGA 59.996 47.619 0.00 0.00 0.00 3.86
106 107 1.133025 GTCGGCAATGATTTCCACCTG 59.867 52.381 0.00 0.00 0.00 4.00
107 108 1.463674 GTCGGCAATGATTTCCACCT 58.536 50.000 0.00 0.00 0.00 4.00
108 109 0.098728 CGTCGGCAATGATTTCCACC 59.901 55.000 0.00 0.00 0.00 4.61
109 110 0.098728 CCGTCGGCAATGATTTCCAC 59.901 55.000 0.00 0.00 0.00 4.02
110 111 2.476772 CCGTCGGCAATGATTTCCA 58.523 52.632 0.00 0.00 0.00 3.53
122 123 3.123674 GGCATATCTAAGCCGTCGG 57.876 57.895 6.99 6.99 41.70 4.79
139 140 2.351336 GACCTCTGTACGGCCATCGG 62.351 65.000 2.24 0.00 44.45 4.18
140 141 1.065928 GACCTCTGTACGGCCATCG 59.934 63.158 2.24 0.00 45.88 3.84
141 142 1.065928 CGACCTCTGTACGGCCATC 59.934 63.158 2.24 0.00 0.00 3.51
142 143 1.664321 GACGACCTCTGTACGGCCAT 61.664 60.000 2.24 0.00 0.00 4.40
143 144 2.282674 ACGACCTCTGTACGGCCA 60.283 61.111 2.24 0.00 0.00 5.36
144 145 2.488820 GACGACCTCTGTACGGCC 59.511 66.667 0.00 0.00 0.00 6.13
145 146 2.099831 CGACGACCTCTGTACGGC 59.900 66.667 0.00 0.00 0.00 5.68
146 147 2.789917 CCGACGACCTCTGTACGG 59.210 66.667 0.00 0.00 32.53 4.02
147 148 1.989966 ATGCCGACGACCTCTGTACG 61.990 60.000 0.00 0.00 0.00 3.67
148 149 1.019673 TATGCCGACGACCTCTGTAC 58.980 55.000 0.00 0.00 0.00 2.90
149 150 1.977056 ATATGCCGACGACCTCTGTA 58.023 50.000 0.00 0.00 0.00 2.74
150 151 1.977056 TATATGCCGACGACCTCTGT 58.023 50.000 0.00 0.00 0.00 3.41
151 152 2.868662 CATATATGCCGACGACCTCTG 58.131 52.381 0.00 0.00 0.00 3.35
164 165 2.473816 CCGTCGGCATAGGCATATATG 58.526 52.381 8.45 8.45 43.71 1.78
165 166 2.890808 CCGTCGGCATAGGCATATAT 57.109 50.000 0.15 0.00 43.71 0.86
178 179 1.887707 GGCATAGGAAAGCCGTCGG 60.888 63.158 6.99 6.99 41.70 4.79
179 180 3.719214 GGCATAGGAAAGCCGTCG 58.281 61.111 0.00 0.00 41.70 5.12
184 185 2.433868 TATCGTCGGCATAGGAAAGC 57.566 50.000 0.00 0.00 0.00 3.51
185 186 3.921021 GTCATATCGTCGGCATAGGAAAG 59.079 47.826 0.00 0.00 0.00 2.62
186 187 3.319689 TGTCATATCGTCGGCATAGGAAA 59.680 43.478 0.00 0.00 0.00 3.13
187 188 2.888414 TGTCATATCGTCGGCATAGGAA 59.112 45.455 0.00 0.00 0.00 3.36
188 189 2.228103 GTGTCATATCGTCGGCATAGGA 59.772 50.000 0.00 0.00 0.00 2.94
189 190 2.030274 TGTGTCATATCGTCGGCATAGG 60.030 50.000 0.00 0.00 0.00 2.57
190 191 3.282831 TGTGTCATATCGTCGGCATAG 57.717 47.619 0.00 0.00 0.00 2.23
191 192 3.506067 AGATGTGTCATATCGTCGGCATA 59.494 43.478 4.14 0.00 0.00 3.14
192 193 2.297315 AGATGTGTCATATCGTCGGCAT 59.703 45.455 4.14 0.00 0.00 4.40
193 194 1.681264 AGATGTGTCATATCGTCGGCA 59.319 47.619 4.14 0.00 0.00 5.69
194 195 2.423926 AGATGTGTCATATCGTCGGC 57.576 50.000 4.14 0.00 0.00 5.54
195 196 3.479949 CGTAGATGTGTCATATCGTCGG 58.520 50.000 15.62 2.12 0.00 4.79
196 197 2.903095 GCGTAGATGTGTCATATCGTCG 59.097 50.000 17.59 17.59 0.00 5.12
197 198 3.908978 CAGCGTAGATGTGTCATATCGTC 59.091 47.826 4.14 1.71 40.13 4.20
198 199 3.890128 CAGCGTAGATGTGTCATATCGT 58.110 45.455 4.14 0.00 40.13 3.73
222 223 3.377346 ACATCCATCAGCGTAGATCAC 57.623 47.619 0.00 0.00 0.00 3.06
223 224 4.619160 GCATACATCCATCAGCGTAGATCA 60.619 45.833 0.00 0.00 0.00 2.92
224 225 3.862267 GCATACATCCATCAGCGTAGATC 59.138 47.826 0.00 0.00 0.00 2.75
225 226 3.368843 GGCATACATCCATCAGCGTAGAT 60.369 47.826 0.00 0.00 0.00 1.98
226 227 2.029020 GGCATACATCCATCAGCGTAGA 60.029 50.000 0.00 0.00 0.00 2.59
227 228 2.341257 GGCATACATCCATCAGCGTAG 58.659 52.381 0.00 0.00 0.00 3.51
228 229 1.336795 CGGCATACATCCATCAGCGTA 60.337 52.381 0.00 0.00 0.00 4.42
229 230 0.601046 CGGCATACATCCATCAGCGT 60.601 55.000 0.00 0.00 0.00 5.07
230 231 0.319813 TCGGCATACATCCATCAGCG 60.320 55.000 0.00 0.00 0.00 5.18
231 232 1.736126 CATCGGCATACATCCATCAGC 59.264 52.381 0.00 0.00 0.00 4.26
232 233 2.289882 ACCATCGGCATACATCCATCAG 60.290 50.000 0.00 0.00 0.00 2.90
233 234 1.699083 ACCATCGGCATACATCCATCA 59.301 47.619 0.00 0.00 0.00 3.07
234 235 2.079158 CACCATCGGCATACATCCATC 58.921 52.381 0.00 0.00 0.00 3.51
235 236 1.271543 CCACCATCGGCATACATCCAT 60.272 52.381 0.00 0.00 0.00 3.41
236 237 0.108396 CCACCATCGGCATACATCCA 59.892 55.000 0.00 0.00 0.00 3.41
237 238 2.932663 CCACCATCGGCATACATCC 58.067 57.895 0.00 0.00 0.00 3.51
247 248 2.642996 TATGCCGACAGCCACCATCG 62.643 60.000 0.00 0.00 42.71 3.84
248 249 0.882042 CTATGCCGACAGCCACCATC 60.882 60.000 0.00 0.00 42.71 3.51
249 250 1.146930 CTATGCCGACAGCCACCAT 59.853 57.895 0.00 0.00 42.71 3.55
250 251 1.987306 TCTATGCCGACAGCCACCA 60.987 57.895 0.00 0.00 42.71 4.17
251 252 1.521681 GTCTATGCCGACAGCCACC 60.522 63.158 0.00 0.00 42.71 4.61
252 253 1.521681 GGTCTATGCCGACAGCCAC 60.522 63.158 0.00 0.00 42.71 5.01
253 254 0.396556 TAGGTCTATGCCGACAGCCA 60.397 55.000 0.00 0.00 42.71 4.75
254 255 0.315568 CTAGGTCTATGCCGACAGCC 59.684 60.000 0.00 0.00 42.71 4.85
255 256 0.315568 CCTAGGTCTATGCCGACAGC 59.684 60.000 0.00 0.00 44.14 4.40
256 257 0.315568 GCCTAGGTCTATGCCGACAG 59.684 60.000 11.31 0.00 35.63 3.51
257 258 1.113517 GGCCTAGGTCTATGCCGACA 61.114 60.000 11.31 0.00 37.17 4.35
258 259 1.666580 GGCCTAGGTCTATGCCGAC 59.333 63.158 11.31 0.00 37.17 4.79
259 260 4.192950 GGCCTAGGTCTATGCCGA 57.807 61.111 11.31 0.00 37.17 5.54
261 262 1.666580 GTCGGCCTAGGTCTATGCC 59.333 63.158 12.53 12.39 41.54 4.40
262 263 1.286260 CGTCGGCCTAGGTCTATGC 59.714 63.158 12.53 0.00 0.00 3.14
263 264 1.524863 CCCGTCGGCCTAGGTCTATG 61.525 65.000 12.53 5.93 0.00 2.23
264 265 1.228490 CCCGTCGGCCTAGGTCTAT 60.228 63.158 12.53 0.00 0.00 1.98
265 266 2.194056 CCCGTCGGCCTAGGTCTA 59.806 66.667 12.53 0.00 0.00 2.59
266 267 3.597086 AACCCGTCGGCCTAGGTCT 62.597 63.158 12.53 0.00 0.00 3.85
267 268 2.653087 AAACCCGTCGGCCTAGGTC 61.653 63.158 11.31 7.06 0.00 3.85
268 269 2.605601 AAACCCGTCGGCCTAGGT 60.606 61.111 11.31 0.00 0.00 3.08
269 270 2.125269 CAAACCCGTCGGCCTAGG 60.125 66.667 5.50 3.67 0.00 3.02
270 271 2.125269 CCAAACCCGTCGGCCTAG 60.125 66.667 5.50 0.00 0.00 3.02
271 272 3.708544 CCCAAACCCGTCGGCCTA 61.709 66.667 5.50 0.00 0.00 3.93
276 277 3.038945 ATAGGCCCCAAACCCGTCG 62.039 63.158 0.00 0.00 0.00 5.12
277 278 1.453197 CATAGGCCCCAAACCCGTC 60.453 63.158 0.00 0.00 0.00 4.79
278 279 2.680965 CATAGGCCCCAAACCCGT 59.319 61.111 0.00 0.00 0.00 5.28
279 280 2.123897 CCATAGGCCCCAAACCCG 60.124 66.667 0.00 0.00 0.00 5.28
280 281 2.443952 GCCATAGGCCCCAAACCC 60.444 66.667 0.00 0.00 44.06 4.11
307 308 4.570663 CCTCTAAGCCGCCGGTCG 62.571 72.222 4.45 7.37 38.08 4.79
308 309 4.222847 CCCTCTAAGCCGCCGGTC 62.223 72.222 4.45 0.00 0.00 4.79
312 313 4.554036 CTGCCCCTCTAAGCCGCC 62.554 72.222 0.00 0.00 0.00 6.13
313 314 3.741830 GACTGCCCCTCTAAGCCGC 62.742 68.421 0.00 0.00 0.00 6.53
314 315 2.501610 GACTGCCCCTCTAAGCCG 59.498 66.667 0.00 0.00 0.00 5.52
315 316 2.911928 GGACTGCCCCTCTAAGCC 59.088 66.667 0.00 0.00 0.00 4.35
316 317 2.501610 CGGACTGCCCCTCTAAGC 59.498 66.667 0.00 0.00 0.00 3.09
317 318 0.396695 TACCGGACTGCCCCTCTAAG 60.397 60.000 9.46 0.00 0.00 2.18
318 319 0.396695 CTACCGGACTGCCCCTCTAA 60.397 60.000 9.46 0.00 0.00 2.10
319 320 1.229359 CTACCGGACTGCCCCTCTA 59.771 63.158 9.46 0.00 0.00 2.43
320 321 2.042843 CTACCGGACTGCCCCTCT 60.043 66.667 9.46 0.00 0.00 3.69
321 322 2.363925 ACTACCGGACTGCCCCTC 60.364 66.667 9.46 0.00 0.00 4.30
322 323 2.683933 CACTACCGGACTGCCCCT 60.684 66.667 9.46 0.00 0.00 4.79
323 324 2.590114 AACACTACCGGACTGCCCC 61.590 63.158 9.46 0.00 0.00 5.80
324 325 1.375523 CAACACTACCGGACTGCCC 60.376 63.158 9.46 0.00 0.00 5.36
325 326 0.604578 TACAACACTACCGGACTGCC 59.395 55.000 9.46 0.00 0.00 4.85
326 327 1.403780 CCTACAACACTACCGGACTGC 60.404 57.143 9.46 0.00 0.00 4.40
327 328 2.165167 TCCTACAACACTACCGGACTG 58.835 52.381 9.46 1.81 0.00 3.51
328 329 2.592102 TCCTACAACACTACCGGACT 57.408 50.000 9.46 0.00 0.00 3.85
329 330 3.881937 AATCCTACAACACTACCGGAC 57.118 47.619 9.46 0.00 0.00 4.79
330 331 5.657745 TGATAAATCCTACAACACTACCGGA 59.342 40.000 9.46 0.00 0.00 5.14
331 332 5.909477 TGATAAATCCTACAACACTACCGG 58.091 41.667 0.00 0.00 0.00 5.28
332 333 5.983720 CCTGATAAATCCTACAACACTACCG 59.016 44.000 0.00 0.00 0.00 4.02
333 334 6.126854 ACCCTGATAAATCCTACAACACTACC 60.127 42.308 0.00 0.00 0.00 3.18
334 335 6.885922 ACCCTGATAAATCCTACAACACTAC 58.114 40.000 0.00 0.00 0.00 2.73
335 336 7.504926 AACCCTGATAAATCCTACAACACTA 57.495 36.000 0.00 0.00 0.00 2.74
336 337 6.388619 AACCCTGATAAATCCTACAACACT 57.611 37.500 0.00 0.00 0.00 3.55
337 338 7.255139 GCATAACCCTGATAAATCCTACAACAC 60.255 40.741 0.00 0.00 0.00 3.32
338 339 6.770785 GCATAACCCTGATAAATCCTACAACA 59.229 38.462 0.00 0.00 0.00 3.33
339 340 6.998673 AGCATAACCCTGATAAATCCTACAAC 59.001 38.462 0.00 0.00 0.00 3.32
340 341 6.998074 CAGCATAACCCTGATAAATCCTACAA 59.002 38.462 0.00 0.00 32.03 2.41
341 342 6.465751 CCAGCATAACCCTGATAAATCCTACA 60.466 42.308 0.00 0.00 32.03 2.74
342 343 5.940470 CCAGCATAACCCTGATAAATCCTAC 59.060 44.000 0.00 0.00 32.03 3.18
343 344 5.610982 ACCAGCATAACCCTGATAAATCCTA 59.389 40.000 0.00 0.00 32.03 2.94
344 345 4.416848 ACCAGCATAACCCTGATAAATCCT 59.583 41.667 0.00 0.00 32.03 3.24
345 346 4.729868 ACCAGCATAACCCTGATAAATCC 58.270 43.478 0.00 0.00 32.03 3.01
346 347 5.010012 CCAACCAGCATAACCCTGATAAATC 59.990 44.000 0.00 0.00 32.03 2.17
347 348 4.895297 CCAACCAGCATAACCCTGATAAAT 59.105 41.667 0.00 0.00 32.03 1.40
348 349 4.277476 CCAACCAGCATAACCCTGATAAA 58.723 43.478 0.00 0.00 32.03 1.40
349 350 3.372566 CCCAACCAGCATAACCCTGATAA 60.373 47.826 0.00 0.00 32.03 1.75
350 351 2.174639 CCCAACCAGCATAACCCTGATA 59.825 50.000 0.00 0.00 32.03 2.15
351 352 1.063717 CCCAACCAGCATAACCCTGAT 60.064 52.381 0.00 0.00 32.03 2.90
352 353 0.331278 CCCAACCAGCATAACCCTGA 59.669 55.000 0.00 0.00 32.03 3.86
353 354 0.684153 CCCCAACCAGCATAACCCTG 60.684 60.000 0.00 0.00 0.00 4.45
354 355 1.697297 CCCCAACCAGCATAACCCT 59.303 57.895 0.00 0.00 0.00 4.34
355 356 2.058001 GCCCCAACCAGCATAACCC 61.058 63.158 0.00 0.00 0.00 4.11
356 357 2.414785 CGCCCCAACCAGCATAACC 61.415 63.158 0.00 0.00 0.00 2.85
357 358 3.063743 GCGCCCCAACCAGCATAAC 62.064 63.158 0.00 0.00 0.00 1.89
358 359 2.753849 GCGCCCCAACCAGCATAA 60.754 61.111 0.00 0.00 0.00 1.90
359 360 3.727258 AGCGCCCCAACCAGCATA 61.727 61.111 2.29 0.00 0.00 3.14
363 364 4.974721 AACCAGCGCCCCAACCAG 62.975 66.667 2.29 0.00 0.00 4.00
366 367 3.977244 CACAACCAGCGCCCCAAC 61.977 66.667 2.29 0.00 0.00 3.77
374 375 4.120331 GATGCCGCCACAACCAGC 62.120 66.667 0.00 0.00 0.00 4.85
375 376 2.360350 AGATGCCGCCACAACCAG 60.360 61.111 0.00 0.00 0.00 4.00
376 377 2.672651 CAGATGCCGCCACAACCA 60.673 61.111 0.00 0.00 0.00 3.67
377 378 0.958382 TAACAGATGCCGCCACAACC 60.958 55.000 0.00 0.00 0.00 3.77
378 379 0.878416 TTAACAGATGCCGCCACAAC 59.122 50.000 0.00 0.00 0.00 3.32
379 380 1.268352 GTTTAACAGATGCCGCCACAA 59.732 47.619 0.00 0.00 0.00 3.33
380 381 0.878416 GTTTAACAGATGCCGCCACA 59.122 50.000 0.00 0.00 0.00 4.17
381 382 0.170339 GGTTTAACAGATGCCGCCAC 59.830 55.000 0.00 0.00 0.00 5.01
382 383 0.037590 AGGTTTAACAGATGCCGCCA 59.962 50.000 0.00 0.00 0.00 5.69
383 384 1.940613 CTAGGTTTAACAGATGCCGCC 59.059 52.381 0.00 0.00 0.00 6.13
384 385 2.608090 GACTAGGTTTAACAGATGCCGC 59.392 50.000 0.00 0.00 0.00 6.53
385 386 3.857052 TGACTAGGTTTAACAGATGCCG 58.143 45.455 0.00 0.00 0.00 5.69
386 387 4.833390 ACTGACTAGGTTTAACAGATGCC 58.167 43.478 0.00 0.00 33.53 4.40
387 388 7.493367 AGATACTGACTAGGTTTAACAGATGC 58.507 38.462 0.00 0.00 33.53 3.91
388 389 9.307121 CAAGATACTGACTAGGTTTAACAGATG 57.693 37.037 0.00 0.00 33.53 2.90
389 390 8.478877 CCAAGATACTGACTAGGTTTAACAGAT 58.521 37.037 0.00 0.00 33.53 2.90
390 391 7.453752 ACCAAGATACTGACTAGGTTTAACAGA 59.546 37.037 0.00 0.00 33.53 3.41
391 392 7.612677 ACCAAGATACTGACTAGGTTTAACAG 58.387 38.462 0.00 0.00 35.14 3.16
392 393 7.549147 ACCAAGATACTGACTAGGTTTAACA 57.451 36.000 0.00 0.00 0.00 2.41
393 394 7.333672 CCAACCAAGATACTGACTAGGTTTAAC 59.666 40.741 0.00 0.00 35.84 2.01
394 395 7.391620 CCAACCAAGATACTGACTAGGTTTAA 58.608 38.462 0.00 0.00 35.84 1.52
395 396 6.070424 CCCAACCAAGATACTGACTAGGTTTA 60.070 42.308 0.00 0.00 35.84 2.01
396 397 5.280521 CCCAACCAAGATACTGACTAGGTTT 60.281 44.000 0.00 0.00 35.84 3.27
397 398 4.225267 CCCAACCAAGATACTGACTAGGTT 59.775 45.833 0.00 0.00 38.33 3.50
398 399 3.775316 CCCAACCAAGATACTGACTAGGT 59.225 47.826 0.00 0.00 0.00 3.08
399 400 3.775316 ACCCAACCAAGATACTGACTAGG 59.225 47.826 0.00 0.00 0.00 3.02
400 401 5.657302 ACTACCCAACCAAGATACTGACTAG 59.343 44.000 0.00 0.00 0.00 2.57
401 402 5.586877 ACTACCCAACCAAGATACTGACTA 58.413 41.667 0.00 0.00 0.00 2.59
402 403 4.426704 ACTACCCAACCAAGATACTGACT 58.573 43.478 0.00 0.00 0.00 3.41
403 404 4.466726 AGACTACCCAACCAAGATACTGAC 59.533 45.833 0.00 0.00 0.00 3.51
404 405 4.466370 CAGACTACCCAACCAAGATACTGA 59.534 45.833 0.00 0.00 0.00 3.41
405 406 4.759782 CAGACTACCCAACCAAGATACTG 58.240 47.826 0.00 0.00 0.00 2.74
406 407 3.197983 GCAGACTACCCAACCAAGATACT 59.802 47.826 0.00 0.00 0.00 2.12
407 408 3.055385 TGCAGACTACCCAACCAAGATAC 60.055 47.826 0.00 0.00 0.00 2.24
408 409 3.055385 GTGCAGACTACCCAACCAAGATA 60.055 47.826 0.00 0.00 0.00 1.98
409 410 1.985159 TGCAGACTACCCAACCAAGAT 59.015 47.619 0.00 0.00 0.00 2.40
410 411 1.071699 GTGCAGACTACCCAACCAAGA 59.928 52.381 0.00 0.00 0.00 3.02
411 412 1.072331 AGTGCAGACTACCCAACCAAG 59.928 52.381 0.00 0.00 0.00 3.61
412 413 1.136828 AGTGCAGACTACCCAACCAA 58.863 50.000 0.00 0.00 0.00 3.67
413 414 1.136828 AAGTGCAGACTACCCAACCA 58.863 50.000 0.00 0.00 0.00 3.67
414 415 2.271944 AAAGTGCAGACTACCCAACC 57.728 50.000 0.00 0.00 0.00 3.77
415 416 4.246458 CTCTAAAGTGCAGACTACCCAAC 58.754 47.826 0.00 0.00 0.00 3.77
416 417 3.260884 CCTCTAAAGTGCAGACTACCCAA 59.739 47.826 0.00 0.00 0.00 4.12
417 418 2.832129 CCTCTAAAGTGCAGACTACCCA 59.168 50.000 0.00 0.00 0.00 4.51
418 419 3.097614 TCCTCTAAAGTGCAGACTACCC 58.902 50.000 0.00 0.00 0.00 3.69
419 420 3.131400 CCTCCTCTAAAGTGCAGACTACC 59.869 52.174 0.00 0.00 0.00 3.18
420 421 3.131400 CCCTCCTCTAAAGTGCAGACTAC 59.869 52.174 0.00 0.00 0.00 2.73
421 422 3.011369 TCCCTCCTCTAAAGTGCAGACTA 59.989 47.826 0.00 0.00 0.00 2.59
422 423 2.183679 CCCTCCTCTAAAGTGCAGACT 58.816 52.381 0.00 0.00 0.00 3.24
423 424 2.167487 CTCCCTCCTCTAAAGTGCAGAC 59.833 54.545 0.00 0.00 0.00 3.51
424 425 2.225394 ACTCCCTCCTCTAAAGTGCAGA 60.225 50.000 0.00 0.00 0.00 4.26
425 426 2.093764 CACTCCCTCCTCTAAAGTGCAG 60.094 54.545 0.00 0.00 31.87 4.41
426 427 1.902508 CACTCCCTCCTCTAAAGTGCA 59.097 52.381 0.00 0.00 31.87 4.57
427 428 1.903183 ACACTCCCTCCTCTAAAGTGC 59.097 52.381 0.00 0.00 40.74 4.40
428 429 2.354203 GCACACTCCCTCCTCTAAAGTG 60.354 54.545 0.00 0.00 42.33 3.16
429 430 1.903183 GCACACTCCCTCCTCTAAAGT 59.097 52.381 0.00 0.00 0.00 2.66
430 431 1.902508 TGCACACTCCCTCCTCTAAAG 59.097 52.381 0.00 0.00 0.00 1.85
431 432 1.623811 GTGCACACTCCCTCCTCTAAA 59.376 52.381 13.17 0.00 0.00 1.85
432 433 1.267121 GTGCACACTCCCTCCTCTAA 58.733 55.000 13.17 0.00 0.00 2.10
433 434 0.614979 GGTGCACACTCCCTCCTCTA 60.615 60.000 20.43 0.00 0.00 2.43
434 435 1.915769 GGTGCACACTCCCTCCTCT 60.916 63.158 20.43 0.00 0.00 3.69
435 436 2.665603 GGTGCACACTCCCTCCTC 59.334 66.667 20.43 0.00 0.00 3.71
436 437 2.725127 TACGGTGCACACTCCCTCCT 62.725 60.000 20.43 0.00 0.00 3.69
437 438 2.227089 CTACGGTGCACACTCCCTCC 62.227 65.000 20.43 0.00 0.00 4.30
438 439 1.215647 CTACGGTGCACACTCCCTC 59.784 63.158 20.43 0.00 0.00 4.30
439 440 2.283529 CCTACGGTGCACACTCCCT 61.284 63.158 20.43 0.00 0.00 4.20
440 441 1.614241 ATCCTACGGTGCACACTCCC 61.614 60.000 20.43 0.00 0.00 4.30
441 442 0.249398 AATCCTACGGTGCACACTCC 59.751 55.000 20.43 0.00 0.00 3.85
442 443 1.732259 CAAATCCTACGGTGCACACTC 59.268 52.381 20.43 0.00 0.00 3.51
443 444 1.808411 CAAATCCTACGGTGCACACT 58.192 50.000 20.43 4.86 0.00 3.55
444 445 0.168128 GCAAATCCTACGGTGCACAC 59.832 55.000 20.43 7.22 36.97 3.82
445 446 0.036164 AGCAAATCCTACGGTGCACA 59.964 50.000 20.43 0.00 39.50 4.57
446 447 0.447801 CAGCAAATCCTACGGTGCAC 59.552 55.000 8.80 8.80 39.50 4.57
447 448 2.853159 CAGCAAATCCTACGGTGCA 58.147 52.632 0.00 0.00 39.50 4.57
448 449 1.429423 GCAGCAAATCCTACGGTGC 59.571 57.895 0.00 0.00 45.55 5.01
449 450 0.729116 CAGCAGCAAATCCTACGGTG 59.271 55.000 0.00 0.00 0.00 4.94
450 451 0.324943 ACAGCAGCAAATCCTACGGT 59.675 50.000 0.00 0.00 0.00 4.83
451 452 0.729116 CACAGCAGCAAATCCTACGG 59.271 55.000 0.00 0.00 0.00 4.02
452 453 1.725641 TCACAGCAGCAAATCCTACG 58.274 50.000 0.00 0.00 0.00 3.51
453 454 3.012518 ACATCACAGCAGCAAATCCTAC 58.987 45.455 0.00 0.00 0.00 3.18
454 455 3.354948 ACATCACAGCAGCAAATCCTA 57.645 42.857 0.00 0.00 0.00 2.94
455 456 2.211250 ACATCACAGCAGCAAATCCT 57.789 45.000 0.00 0.00 0.00 3.24
456 457 3.733077 GCTTACATCACAGCAGCAAATCC 60.733 47.826 0.00 0.00 35.95 3.01
457 458 3.128242 AGCTTACATCACAGCAGCAAATC 59.872 43.478 0.00 0.00 38.61 2.17
458 459 3.087031 AGCTTACATCACAGCAGCAAAT 58.913 40.909 0.00 0.00 38.61 2.32
459 460 2.227149 CAGCTTACATCACAGCAGCAAA 59.773 45.455 0.00 0.00 38.61 3.68
460 461 1.808343 CAGCTTACATCACAGCAGCAA 59.192 47.619 0.00 0.00 38.61 3.91
461 462 1.445871 CAGCTTACATCACAGCAGCA 58.554 50.000 0.00 0.00 38.61 4.41
462 463 0.731417 CCAGCTTACATCACAGCAGC 59.269 55.000 0.00 0.00 38.61 5.25
463 464 0.731417 GCCAGCTTACATCACAGCAG 59.269 55.000 0.00 0.00 38.61 4.24
464 465 0.036590 TGCCAGCTTACATCACAGCA 59.963 50.000 0.00 0.00 38.61 4.41
465 466 1.167851 TTGCCAGCTTACATCACAGC 58.832 50.000 0.00 0.00 36.16 4.40
466 467 3.003068 GCTATTGCCAGCTTACATCACAG 59.997 47.826 0.00 0.00 38.57 3.66
467 468 2.945008 GCTATTGCCAGCTTACATCACA 59.055 45.455 0.00 0.00 38.57 3.58
468 469 3.615849 GCTATTGCCAGCTTACATCAC 57.384 47.619 0.00 0.00 38.57 3.06
481 482 0.739813 AACCGACACGAGGCTATTGC 60.740 55.000 0.00 0.00 38.76 3.56
482 483 0.999406 CAACCGACACGAGGCTATTG 59.001 55.000 0.00 0.00 0.00 1.90
483 484 0.606604 ACAACCGACACGAGGCTATT 59.393 50.000 0.00 0.00 0.00 1.73
484 485 0.108804 CACAACCGACACGAGGCTAT 60.109 55.000 0.00 0.00 0.00 2.97
485 486 1.174078 TCACAACCGACACGAGGCTA 61.174 55.000 0.00 0.00 0.00 3.93
486 487 2.029073 CACAACCGACACGAGGCT 59.971 61.111 0.00 0.00 0.00 4.58
487 488 2.022129 CTCACAACCGACACGAGGC 61.022 63.158 0.00 0.00 0.00 4.70
488 489 0.663568 GTCTCACAACCGACACGAGG 60.664 60.000 0.00 0.00 0.00 4.63
489 490 0.311165 AGTCTCACAACCGACACGAG 59.689 55.000 0.00 0.00 32.68 4.18
490 491 0.742505 AAGTCTCACAACCGACACGA 59.257 50.000 0.00 0.00 32.68 4.35
491 492 0.852777 CAAGTCTCACAACCGACACG 59.147 55.000 0.00 0.00 32.68 4.49
492 493 1.217882 CCAAGTCTCACAACCGACAC 58.782 55.000 0.00 0.00 32.68 3.67
493 494 0.828022 ACCAAGTCTCACAACCGACA 59.172 50.000 0.00 0.00 32.68 4.35
494 495 1.202486 TCACCAAGTCTCACAACCGAC 60.202 52.381 0.00 0.00 0.00 4.79
495 496 1.116308 TCACCAAGTCTCACAACCGA 58.884 50.000 0.00 0.00 0.00 4.69
496 497 2.169832 ATCACCAAGTCTCACAACCG 57.830 50.000 0.00 0.00 0.00 4.44
497 498 4.137543 AGAAATCACCAAGTCTCACAACC 58.862 43.478 0.00 0.00 0.00 3.77
498 499 6.861065 TTAGAAATCACCAAGTCTCACAAC 57.139 37.500 0.00 0.00 0.00 3.32
499 500 9.739276 ATTATTAGAAATCACCAAGTCTCACAA 57.261 29.630 0.00 0.00 0.00 3.33
500 501 9.166173 CATTATTAGAAATCACCAAGTCTCACA 57.834 33.333 0.00 0.00 0.00 3.58
501 502 9.383519 TCATTATTAGAAATCACCAAGTCTCAC 57.616 33.333 0.00 0.00 0.00 3.51
502 503 9.958180 TTCATTATTAGAAATCACCAAGTCTCA 57.042 29.630 0.00 0.00 0.00 3.27
509 510 9.402320 TCCGATTTTCATTATTAGAAATCACCA 57.598 29.630 8.00 0.00 35.17 4.17
510 511 9.884465 CTCCGATTTTCATTATTAGAAATCACC 57.116 33.333 8.00 0.00 35.17 4.02
515 516 9.899661 TTCCTCTCCGATTTTCATTATTAGAAA 57.100 29.630 0.00 0.00 33.48 2.52
516 517 9.899661 TTTCCTCTCCGATTTTCATTATTAGAA 57.100 29.630 0.00 0.00 0.00 2.10
517 518 9.326413 GTTTCCTCTCCGATTTTCATTATTAGA 57.674 33.333 0.00 0.00 0.00 2.10
518 519 9.331282 AGTTTCCTCTCCGATTTTCATTATTAG 57.669 33.333 0.00 0.00 0.00 1.73
519 520 9.326413 GAGTTTCCTCTCCGATTTTCATTATTA 57.674 33.333 0.00 0.00 34.69 0.98
520 521 8.049721 AGAGTTTCCTCTCCGATTTTCATTATT 58.950 33.333 0.00 0.00 45.08 1.40
521 522 7.569240 AGAGTTTCCTCTCCGATTTTCATTAT 58.431 34.615 0.00 0.00 45.08 1.28
522 523 6.947464 AGAGTTTCCTCTCCGATTTTCATTA 58.053 36.000 0.00 0.00 45.08 1.90
523 524 5.810095 AGAGTTTCCTCTCCGATTTTCATT 58.190 37.500 0.00 0.00 45.08 2.57
524 525 5.428184 AGAGTTTCCTCTCCGATTTTCAT 57.572 39.130 0.00 0.00 45.08 2.57
525 526 4.891992 AGAGTTTCCTCTCCGATTTTCA 57.108 40.909 0.00 0.00 45.08 2.69
536 537 7.321745 TCTTTTTGACAAAGAGAGTTTCCTC 57.678 36.000 15.25 0.00 38.04 3.71
537 538 7.703058 TTCTTTTTGACAAAGAGAGTTTCCT 57.297 32.000 17.66 0.00 37.54 3.36
538 539 8.757164 TTTTCTTTTTGACAAAGAGAGTTTCC 57.243 30.769 17.66 0.00 37.54 3.13
540 541 8.988934 GGTTTTTCTTTTTGACAAAGAGAGTTT 58.011 29.630 17.66 0.00 37.54 2.66
541 542 8.367911 AGGTTTTTCTTTTTGACAAAGAGAGTT 58.632 29.630 17.66 3.34 37.54 3.01
542 543 7.896811 AGGTTTTTCTTTTTGACAAAGAGAGT 58.103 30.769 17.66 2.23 37.54 3.24
543 544 8.763049 AAGGTTTTTCTTTTTGACAAAGAGAG 57.237 30.769 17.66 10.18 37.54 3.20
544 545 9.554395 AAAAGGTTTTTCTTTTTGACAAAGAGA 57.446 25.926 15.25 15.25 42.32 3.10
554 555 7.681679 TGGTCCTACAAAAGGTTTTTCTTTTT 58.318 30.769 0.00 0.00 46.62 1.94
555 556 7.038587 ACTGGTCCTACAAAAGGTTTTTCTTTT 60.039 33.333 0.00 0.00 46.62 2.27
556 557 6.439375 ACTGGTCCTACAAAAGGTTTTTCTTT 59.561 34.615 0.00 0.00 46.62 2.52
557 558 5.955959 ACTGGTCCTACAAAAGGTTTTTCTT 59.044 36.000 0.00 0.00 46.62 2.52
558 559 5.516044 ACTGGTCCTACAAAAGGTTTTTCT 58.484 37.500 0.00 0.00 46.62 2.52
559 560 5.358725 TGACTGGTCCTACAAAAGGTTTTTC 59.641 40.000 0.00 0.00 46.62 2.29
560 561 5.265989 TGACTGGTCCTACAAAAGGTTTTT 58.734 37.500 0.00 0.00 46.62 1.94
561 562 4.862371 TGACTGGTCCTACAAAAGGTTTT 58.138 39.130 0.00 0.00 46.62 2.43
562 563 4.165372 TCTGACTGGTCCTACAAAAGGTTT 59.835 41.667 0.00 0.00 46.62 3.27
563 564 3.714798 TCTGACTGGTCCTACAAAAGGTT 59.285 43.478 0.00 0.00 46.62 3.50
564 565 3.314693 TCTGACTGGTCCTACAAAAGGT 58.685 45.455 0.00 0.00 46.62 3.50
579 580 4.222366 TCACAAGAATGATGAGCTCTGACT 59.778 41.667 16.19 3.26 0.00 3.41
582 583 3.306434 CGTCACAAGAATGATGAGCTCTG 59.694 47.826 16.19 4.49 37.75 3.35
597 598 1.399714 AGTCTGTCACTCCGTCACAA 58.600 50.000 0.00 0.00 0.00 3.33
607 608 1.262683 GCAGCTTGTGAAGTCTGTCAC 59.737 52.381 0.00 0.00 46.74 3.67
616 617 0.521291 GCGGTTATGCAGCTTGTGAA 59.479 50.000 0.00 0.00 35.39 3.18
617 618 0.605050 TGCGGTTATGCAGCTTGTGA 60.605 50.000 0.00 0.00 40.62 3.58
618 619 1.875262 TGCGGTTATGCAGCTTGTG 59.125 52.632 0.00 0.00 40.62 3.33
628 630 4.495679 CGTGCATTGTATCTTTGCGGTTAT 60.496 41.667 0.00 0.00 39.23 1.89
629 631 3.181515 CGTGCATTGTATCTTTGCGGTTA 60.182 43.478 0.00 0.00 39.23 2.85
642 644 1.068333 GCATTTCCAGACGTGCATTGT 60.068 47.619 0.00 0.00 37.52 2.71
829 1461 2.295885 GACCCTCTTGCTTGGATCATG 58.704 52.381 0.00 0.00 0.00 3.07
830 1462 1.918262 TGACCCTCTTGCTTGGATCAT 59.082 47.619 0.00 0.00 0.00 2.45
831 1463 1.280133 CTGACCCTCTTGCTTGGATCA 59.720 52.381 0.00 0.00 0.00 2.92
832 1464 1.280421 ACTGACCCTCTTGCTTGGATC 59.720 52.381 0.00 0.00 0.00 3.36
902 1557 0.923911 GCACTGAAACGTTGCGTGTC 60.924 55.000 23.13 15.64 43.56 3.67
928 1583 1.310904 CGCACCTAGTCCTAGACCTC 58.689 60.000 2.86 0.00 35.21 3.85
947 1602 1.396996 CTTGCCGTAGTATGTGTTGGC 59.603 52.381 0.00 0.00 42.76 4.52
1253 1927 2.009108 CGTCCATGAATGCACGAGG 58.991 57.895 0.36 0.00 34.06 4.63
1281 1970 1.386525 TACAGATACCACCGACGGCC 61.387 60.000 15.39 0.00 0.00 6.13
2297 3031 1.970114 GAGGTGTCGGTCGAGGTGA 60.970 63.158 0.00 0.00 0.00 4.02
2309 3043 1.752683 CTAGCTAGTCGTGGAGGTGT 58.247 55.000 12.92 0.00 0.00 4.16
2330 3064 4.835284 TGGATGAATGTGGTTGTAGCTA 57.165 40.909 0.00 0.00 0.00 3.32
2331 3065 3.719268 TGGATGAATGTGGTTGTAGCT 57.281 42.857 0.00 0.00 0.00 3.32
2332 3066 3.947196 TCATGGATGAATGTGGTTGTAGC 59.053 43.478 0.00 0.00 33.08 3.58
2333 3067 5.240183 GGATCATGGATGAATGTGGTTGTAG 59.760 44.000 0.00 0.00 40.69 2.74
2362 3096 0.249405 GAGCAATCGAGGAGGCTGAG 60.249 60.000 7.51 0.00 36.59 3.35
2405 3139 6.267817 TGCTATGTATGAAAAAGCATCAAGC 58.732 36.000 0.00 0.00 46.19 4.01
2409 3143 5.824429 TGCTGCTATGTATGAAAAAGCATC 58.176 37.500 0.00 0.00 41.93 3.91
2410 3144 5.735354 GCTGCTGCTATGTATGAAAAAGCAT 60.735 40.000 8.53 0.00 41.93 3.79
2411 3145 4.439153 GCTGCTGCTATGTATGAAAAAGCA 60.439 41.667 8.53 0.00 40.68 3.91
2412 3146 4.040376 GCTGCTGCTATGTATGAAAAAGC 58.960 43.478 8.53 0.00 36.03 3.51
2413 3147 5.239359 TGCTGCTGCTATGTATGAAAAAG 57.761 39.130 17.00 0.00 40.48 2.27
2414 3148 4.439153 GCTGCTGCTGCTATGTATGAAAAA 60.439 41.667 22.10 0.00 40.48 1.94
2423 3157 0.464013 AGAAGGCTGCTGCTGCTATG 60.464 55.000 26.79 8.06 40.48 2.23
2432 3166 4.603131 TGGATAAAATCAAGAAGGCTGCT 58.397 39.130 0.00 0.00 0.00 4.24
2573 3335 3.857157 AGAAGGTTACCTCACAAGCAA 57.143 42.857 3.62 0.00 30.89 3.91
2587 3349 5.249393 ACATTCATCACAAGGAGTAGAAGGT 59.751 40.000 0.00 0.00 30.30 3.50
2590 3352 5.185056 TCGACATTCATCACAAGGAGTAGAA 59.815 40.000 0.00 0.00 0.00 2.10
2591 3353 4.705023 TCGACATTCATCACAAGGAGTAGA 59.295 41.667 0.00 0.00 0.00 2.59
2594 3482 3.961480 TCGACATTCATCACAAGGAGT 57.039 42.857 0.00 0.00 0.00 3.85
2597 3485 2.941064 AGCATCGACATTCATCACAAGG 59.059 45.455 0.00 0.00 0.00 3.61
2606 3494 5.663795 ACAATACATGAGCATCGACATTC 57.336 39.130 0.00 0.00 38.61 2.67
2612 3500 6.067039 CGTTCAATACAATACATGAGCATCG 58.933 40.000 0.00 0.00 38.61 3.84
2617 3505 7.713764 TCCATCGTTCAATACAATACATGAG 57.286 36.000 0.00 0.00 0.00 2.90
2624 3512 5.356426 TCGACATCCATCGTTCAATACAAT 58.644 37.500 0.00 0.00 42.80 2.71
2625 3513 4.749976 TCGACATCCATCGTTCAATACAA 58.250 39.130 0.00 0.00 42.80 2.41
2626 3514 4.379339 TCGACATCCATCGTTCAATACA 57.621 40.909 0.00 0.00 42.80 2.29
2627 3515 5.907197 AATCGACATCCATCGTTCAATAC 57.093 39.130 0.00 0.00 42.80 1.89
2628 3516 5.236263 CCAAATCGACATCCATCGTTCAATA 59.764 40.000 0.00 0.00 42.80 1.90
2636 3524 4.151335 CGAGAATCCAAATCGACATCCATC 59.849 45.833 0.00 0.00 38.72 3.51
2651 3544 4.331168 CCTGTCAAGAACAATCGAGAATCC 59.669 45.833 0.00 0.00 37.45 3.01
2659 3552 6.566197 AACTGAATCCTGTCAAGAACAATC 57.434 37.500 0.00 0.00 37.45 2.67
2729 3880 2.408704 CGTGTTGTAGTAGCACTTCTGC 59.591 50.000 0.00 0.00 44.63 4.26
2731 3882 4.320788 GGTACGTGTTGTAGTAGCACTTCT 60.321 45.833 0.00 0.00 40.05 2.85
2745 3896 8.583011 CAAATGACTTTGTTCCGGTACGTGTT 62.583 42.308 6.73 0.00 43.02 3.32
2746 3897 7.203560 CAAATGACTTTGTTCCGGTACGTGT 62.204 44.000 6.73 5.15 43.02 4.49
2747 3898 4.842442 CAAATGACTTTGTTCCGGTACGTG 60.842 45.833 6.73 2.01 43.02 4.49
2748 3899 3.249080 CAAATGACTTTGTTCCGGTACGT 59.751 43.478 6.73 0.00 43.02 3.57
2749 3900 3.364565 CCAAATGACTTTGTTCCGGTACG 60.365 47.826 6.73 0.00 45.54 3.67
2750 3901 3.610821 GCCAAATGACTTTGTTCCGGTAC 60.611 47.826 3.92 3.92 40.15 3.34
2751 3902 2.554893 GCCAAATGACTTTGTTCCGGTA 59.445 45.455 0.00 0.00 40.15 4.02
2768 3925 0.032130 GCCTCATCGTCGATAGCCAA 59.968 55.000 7.56 0.00 0.00 4.52
2773 3930 1.106944 TGCCAGCCTCATCGTCGATA 61.107 55.000 7.56 0.00 0.00 2.92
2776 4005 2.107750 ATGCCAGCCTCATCGTCG 59.892 61.111 0.00 0.00 0.00 5.12
2779 4008 2.831366 GCACATGCCAGCCTCATCG 61.831 63.158 0.00 0.00 34.31 3.84
2783 4012 1.094073 CACTAGCACATGCCAGCCTC 61.094 60.000 0.00 0.00 43.38 4.70
2795 4024 6.887013 ACTAGTAGTAGTTCTAGCACTAGCA 58.113 40.000 18.05 0.00 38.76 3.49
2806 4035 2.606725 TGCTCGCGACTAGTAGTAGTTC 59.393 50.000 3.71 6.34 39.78 3.01
2807 4036 2.608546 CTGCTCGCGACTAGTAGTAGTT 59.391 50.000 3.71 0.00 39.78 2.24
2808 4037 2.203401 CTGCTCGCGACTAGTAGTAGT 58.797 52.381 3.71 10.09 42.59 2.73
2848 4077 4.082190 TGTTTACGAATCAGGACTCAGGAG 60.082 45.833 0.00 0.00 0.00 3.69
2849 4078 3.830178 TGTTTACGAATCAGGACTCAGGA 59.170 43.478 0.00 0.00 0.00 3.86
2850 4079 4.177026 CTGTTTACGAATCAGGACTCAGG 58.823 47.826 0.00 0.00 0.00 3.86
2851 4080 4.623167 CACTGTTTACGAATCAGGACTCAG 59.377 45.833 0.00 0.00 34.02 3.35
2852 4081 4.556233 CACTGTTTACGAATCAGGACTCA 58.444 43.478 0.00 0.00 34.02 3.41
2853 4082 3.927142 CCACTGTTTACGAATCAGGACTC 59.073 47.826 0.00 0.00 34.02 3.36
2854 4083 3.864921 GCCACTGTTTACGAATCAGGACT 60.865 47.826 0.00 0.00 34.02 3.85
2855 4084 2.415512 GCCACTGTTTACGAATCAGGAC 59.584 50.000 0.00 0.00 34.02 3.85
2933 4162 5.342806 TGATTGAGTAGCAAAAGTTGTCG 57.657 39.130 0.00 0.00 40.48 4.35
2950 5718 6.144886 CACCAACATGTTTTGACTGATGATTG 59.855 38.462 8.77 0.00 0.00 2.67
2951 5719 6.183360 ACACCAACATGTTTTGACTGATGATT 60.183 34.615 19.41 0.00 0.00 2.57
2952 5720 5.302568 ACACCAACATGTTTTGACTGATGAT 59.697 36.000 19.41 0.00 0.00 2.45
2953 5721 4.644234 ACACCAACATGTTTTGACTGATGA 59.356 37.500 19.41 0.00 0.00 2.92
2967 5735 1.470890 CGGCGGATAAAACACCAACAT 59.529 47.619 0.00 0.00 0.00 2.71
2968 5736 0.875728 CGGCGGATAAAACACCAACA 59.124 50.000 0.00 0.00 0.00 3.33
2969 5737 0.876399 ACGGCGGATAAAACACCAAC 59.124 50.000 13.24 0.00 0.00 3.77
2970 5738 1.267261 CAACGGCGGATAAAACACCAA 59.733 47.619 13.24 0.00 0.00 3.67
2973 5741 3.010088 GCAACGGCGGATAAAACAC 57.990 52.632 13.24 0.00 0.00 3.32
3007 5785 7.410728 GCTCGTGTCACATTAAATTTTTCATGG 60.411 37.037 3.42 0.00 0.00 3.66
3008 5786 7.114670 TGCTCGTGTCACATTAAATTTTTCATG 59.885 33.333 3.42 0.00 0.00 3.07
3010 5788 6.499172 TGCTCGTGTCACATTAAATTTTTCA 58.501 32.000 3.42 0.00 0.00 2.69
3011 5789 6.984740 TGCTCGTGTCACATTAAATTTTTC 57.015 33.333 3.42 0.00 0.00 2.29
3012 5790 6.978080 ACTTGCTCGTGTCACATTAAATTTTT 59.022 30.769 3.42 0.00 0.00 1.94
3013 5791 6.503524 ACTTGCTCGTGTCACATTAAATTTT 58.496 32.000 3.42 0.00 0.00 1.82
3014 5792 6.072112 ACTTGCTCGTGTCACATTAAATTT 57.928 33.333 3.42 0.00 0.00 1.82
3015 5793 5.689383 ACTTGCTCGTGTCACATTAAATT 57.311 34.783 3.42 0.00 0.00 1.82
3016 5794 5.689383 AACTTGCTCGTGTCACATTAAAT 57.311 34.783 3.42 0.00 0.00 1.40
3017 5795 5.295787 AGAAACTTGCTCGTGTCACATTAAA 59.704 36.000 3.42 0.00 0.00 1.52
3115 5894 4.020218 TCCATAAGAAGGTGAGTGAACCAG 60.020 45.833 0.00 0.00 43.20 4.00
3184 6000 0.755079 TCGGCTCCAATCCATCTCAG 59.245 55.000 0.00 0.00 0.00 3.35
3261 6081 0.106708 GGAATATCTCACCGGCAGCA 59.893 55.000 0.00 0.00 0.00 4.41
3262 6082 0.394565 AGGAATATCTCACCGGCAGC 59.605 55.000 0.00 0.00 0.00 5.25
3270 6090 6.490381 ACTCATTACGCACTAGGAATATCTCA 59.510 38.462 0.00 0.00 0.00 3.27
3319 6139 4.460382 CAGGTTTCAATGAACTGCAGGTAT 59.540 41.667 19.93 6.23 0.00 2.73
3329 6149 2.231964 GGCAGATGCAGGTTTCAATGAA 59.768 45.455 7.19 0.00 44.36 2.57
3396 6226 4.499023 CGCGTATGTGCACCGTGC 62.499 66.667 16.93 16.93 45.29 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.