AutoCloner

Multiple sequence alignment - TraesCS6A01G387800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G387800	chr6A	100.000	3441	0	0	1	3441	604293718	604297158	0.000000e+00	6355
1	TraesCS6A01G387800	chr6A	93.434	1721	61	31	743	2441	604384281	604385971	0.000000e+00	2505
2	TraesCS6A01G387800	chr6B	87.208	2611	170	70	156	2644	695936031	695938599	0.000000e+00	2820
3	TraesCS6A01G387800	chr6D	91.597	2047	106	35	828	2832	457473573	457471551	0.000000e+00	2767
4	TraesCS6A01G387800	chr6D	90.614	1726	101	36	743	2441	457347528	457345837	0.000000e+00	2233
5	TraesCS6A01G387800	chr6D	78.253	538	39	27	39	532	457474937	457474434	1.220000e-69	274
6	TraesCS6A01G387800	chr6D	77.835	194	41	2	2222	2414	292376613	292376805	6.030000e-23	119
7	TraesCS6A01G387800	chr5A	95.815	1625	32	6	1	1596	531242269	531240652	0.000000e+00	2591
8	TraesCS6A01G387800	chr5A	74.327	966	186	43	1467	2414	454720371	454721292	1.520000e-93	353
9	TraesCS6A01G387800	chr2A	94.881	586	29	1	2856	3441	440477182	440476598	0.000000e+00	915
10	TraesCS6A01G387800	chr2A	94.872	585	30	0	2857	3441	709039648	709040232	0.000000e+00	915
11	TraesCS6A01G387800	chr2A	94.558	588	30	2	2856	3441	329113211	329112624	0.000000e+00	907
12	TraesCS6A01G387800	chr2A	84.153	183	25	4	1186	1366	607476178	607476358	1.270000e-39	174
13	TraesCS6A01G387800	chr2A	82.514	183	28	4	1186	1366	610058587	610058767	1.280000e-34	158
14	TraesCS6A01G387800	chr2A	73.497	449	98	18	1486	1922	607476495	607476934	2.140000e-32	150
15	TraesCS6A01G387800	chr1D	94.710	586	30	1	2856	3441	326240685	326240101	0.000000e+00	909
16	TraesCS6A01G387800	chr1D	87.379	103	12	1	1793	1895	199624598	199624699	2.170000e-22	117
17	TraesCS6A01G387800	chr5D	94.359	585	33	0	2857	3441	102022493	102021909	0.000000e+00	898
18	TraesCS6A01G387800	chr5D	75.946	740	139	25	1687	2414	353763228	353763940	9.140000e-91	344
19	TraesCS6A01G387800	chr2D	94.359	585	33	0	2857	3441	31475076	31474492	0.000000e+00	898
20	TraesCS6A01G387800	chr2D	94.027	586	35	0	2856	3441	506465243	506464658	0.000000e+00	889
21	TraesCS6A01G387800	chr2D	85.535	159	19	4	1186	1342	462197433	462197589	2.750000e-36	163
22	TraesCS6A01G387800	chr2D	86.726	113	13	2	1486	1597	462197753	462197864	1.300000e-24	124
23	TraesCS6A01G387800	chr4A	94.359	585	32	1	2857	3441	313643940	313643357	0.000000e+00	896
24	TraesCS6A01G387800	chr3D	94.188	585	34	0	2857	3441	573155552	573156136	0.000000e+00	893
25	TraesCS6A01G387800	chr5B	74.385	976	184	48	1467	2414	417874736	417875673	1.170000e-94	357
26	TraesCS6A01G387800	chr2B	83.060	183	27	4	1186	1366	544981724	544981904	2.750000e-36	163
27	TraesCS6A01G387800	chr2B	73.094	446	101	18	1486	1922	544982032	544982467	1.290000e-29	141
28	TraesCS6A01G387800	chr1A	83.846	130	20	1	1793	1922	251376999	251377127	4.660000e-24	122
29	TraesCS6A01G387800	chr7B	83.929	112	18	0	1486	1597	102782876	102782765	1.310000e-19	108

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G387800	chr6A	604293718	604297158	3440	False	6355.0	6355	100.000	1	3441	1	chr6A.!!$F1	3440
1	TraesCS6A01G387800	chr6A	604384281	604385971	1690	False	2505.0	2505	93.434	743	2441	1	chr6A.!!$F2	1698
2	TraesCS6A01G387800	chr6B	695936031	695938599	2568	False	2820.0	2820	87.208	156	2644	1	chr6B.!!$F1	2488
3	TraesCS6A01G387800	chr6D	457345837	457347528	1691	True	2233.0	2233	90.614	743	2441	1	chr6D.!!$R1	1698
4	TraesCS6A01G387800	chr6D	457471551	457474937	3386	True	1520.5	2767	84.925	39	2832	2	chr6D.!!$R2	2793
5	TraesCS6A01G387800	chr5A	531240652	531242269	1617	True	2591.0	2591	95.815	1	1596	1	chr5A.!!$R1	1595
6	TraesCS6A01G387800	chr5A	454720371	454721292	921	False	353.0	353	74.327	1467	2414	1	chr5A.!!$F1	947
7	TraesCS6A01G387800	chr2A	440476598	440477182	584	True	915.0	915	94.881	2856	3441	1	chr2A.!!$R2	585
8	TraesCS6A01G387800	chr2A	709039648	709040232	584	False	915.0	915	94.872	2857	3441	1	chr2A.!!$F2	584
9	TraesCS6A01G387800	chr2A	329112624	329113211	587	True	907.0	907	94.558	2856	3441	1	chr2A.!!$R1	585
10	TraesCS6A01G387800	chr1D	326240101	326240685	584	True	909.0	909	94.710	2856	3441	1	chr1D.!!$R1	585
11	TraesCS6A01G387800	chr5D	102021909	102022493	584	True	898.0	898	94.359	2857	3441	1	chr5D.!!$R1	584
12	TraesCS6A01G387800	chr5D	353763228	353763940	712	False	344.0	344	75.946	1687	2414	1	chr5D.!!$F1	727
13	TraesCS6A01G387800	chr2D	31474492	31475076	584	True	898.0	898	94.359	2857	3441	1	chr2D.!!$R1	584
14	TraesCS6A01G387800	chr2D	506464658	506465243	585	True	889.0	889	94.027	2856	3441	1	chr2D.!!$R2	585
15	TraesCS6A01G387800	chr4A	313643357	313643940	583	True	896.0	896	94.359	2857	3441	1	chr4A.!!$R1	584
16	TraesCS6A01G387800	chr3D	573155552	573156136	584	False	893.0	893	94.188	2857	3441	1	chr3D.!!$F1	584
17	TraesCS6A01G387800	chr5B	417874736	417875673	937	False	357.0	357	74.385	1467	2414	1	chr5B.!!$F1	947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
583	655	0.884259	TGCGTGTGTGCTTGCATACT	60.884	50.0	19.89	0.0	35.36	2.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2494	3346	2.997986	CAAAATCAAGAAGGCCATGTGC	59.002	45.455	5.01	0.0	40.16	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	6.282199	AGTGTGGAGTATAACTGTAACTGG	57.718	41.667	0.00	0.00	0.00	4.00
53	54	3.806380	AGCTCATAGTGGCTGATTTGAG	58.194	45.455	0.00	0.00	37.41	3.02
87	95	4.160439	TTGGATTGTTAGTGCAAACCACAA	59.840	37.500	7.19	0.00	46.28	3.33
209	262	3.061139	GCGTCATTGCGTAGATGTTAGAC	60.061	47.826	3.22	0.00	0.00	2.59
491	563	0.940126	CTGGTGTGCAGATATTCGGC	59.060	55.000	0.00	0.00	38.08	5.54
504	576	6.102663	CAGATATTCGGCTAGATCGGAATTT	58.897	40.000	0.00	0.00	37.28	1.82
512	584	5.305585	GGCTAGATCGGAATTTATTCACCA	58.694	41.667	0.00	0.00	38.53	4.17
516	588	7.819900	GCTAGATCGGAATTTATTCACCACTAT	59.180	37.037	0.00	0.00	38.53	2.12
534	606	4.036498	CACTATGGTACTCGAAATCGTCCT	59.964	45.833	2.41	0.00	40.80	3.85
583	655	0.884259	TGCGTGTGTGCTTGCATACT	60.884	50.000	19.89	0.00	35.36	2.12
590	671	2.416547	GTGTGCTTGCATACTAGTGGTG	59.583	50.000	13.83	5.70	0.00	4.17
602	683	3.668447	ACTAGTGGTGCTGAACATTGAG	58.332	45.455	0.00	0.00	0.00	3.02
606	687	4.256920	AGTGGTGCTGAACATTGAGATAC	58.743	43.478	0.00	0.00	0.00	2.24
619	704	6.831976	ACATTGAGATACCTCCCTAATCAAC	58.168	40.000	0.00	0.00	38.66	3.18
695	782	5.446709	CAGCACACACTAACAAGAAATCTG	58.553	41.667	0.00	0.00	0.00	2.90
946	1669	2.699954	GACGACATGATCCAACCAAGT	58.300	47.619	0.00	0.00	0.00	3.16
957	1684	1.525995	AACCAAGTGGCCACTCACG	60.526	57.895	37.75	27.47	41.58	4.35
2494	3346	5.002840	CAGTTCGATTGCTTATGCTTTTTCG	59.997	40.000	1.96	5.68	40.48	3.46
2495	3347	3.425404	TCGATTGCTTATGCTTTTTCGC	58.575	40.909	1.96	0.00	40.48	4.70
2496	3348	3.120025	TCGATTGCTTATGCTTTTTCGCA	60.120	39.130	1.96	0.00	45.10	5.10
2497	3349	3.001758	CGATTGCTTATGCTTTTTCGCAC	60.002	43.478	1.96	0.00	43.61	5.34
2498	3350	3.361794	TTGCTTATGCTTTTTCGCACA	57.638	38.095	1.96	0.00	43.61	4.57
2649	3519	5.132502	CCAGCAGATAAATCCATGGTTACA	58.867	41.667	12.58	0.00	0.00	2.41
2724	3594	3.550820	CGGGTGGGTGATAATTGAATCA	58.449	45.455	0.00	0.00	33.48	2.57
2732	3602	8.680903	GTGGGTGATAATTGAATCATGGATATC	58.319	37.037	0.00	0.00	38.13	1.63
2733	3603	8.617491	TGGGTGATAATTGAATCATGGATATCT	58.383	33.333	2.05	0.00	38.13	1.98
2734	3604	8.900781	GGGTGATAATTGAATCATGGATATCTG	58.099	37.037	2.05	0.00	38.13	2.90
2735	3605	8.900781	GGTGATAATTGAATCATGGATATCTGG	58.099	37.037	2.05	0.00	38.13	3.86
2736	3606	8.404000	GTGATAATTGAATCATGGATATCTGGC	58.596	37.037	2.05	0.00	38.13	4.85
2737	3607	7.558807	TGATAATTGAATCATGGATATCTGGCC	59.441	37.037	0.00	0.00	30.92	5.36
2738	3608	3.726557	TGAATCATGGATATCTGGCCC	57.273	47.619	0.00	0.00	0.00	5.80
2752	3626	2.173519	CTGGCCCATGATTGTTCAGTT	58.826	47.619	0.00	0.00	34.73	3.16
2754	3628	2.971330	TGGCCCATGATTGTTCAGTTTT	59.029	40.909	0.00	0.00	34.73	2.43
2782	3656	9.483062	CTAGTTTCATTGTCTGAATCGATTTTC	57.517	33.333	12.81	1.57	43.30	2.29
2788	3662	0.663153	CTGAATCGATTTTCGGCCCC	59.337	55.000	12.81	0.00	40.88	5.80
2789	3663	1.092921	TGAATCGATTTTCGGCCCCG	61.093	55.000	12.81	0.00	40.88	5.73
2816	3690	4.499696	GCATATCTGGCCCATGTTTTACAC	60.500	45.833	0.00	0.00	0.00	2.90
2832	3706	0.616111	ACACCTTGTTTGGTTGCCCA	60.616	50.000	0.00	0.00	38.45	5.36
2833	3707	0.179086	CACCTTGTTTGGTTGCCCAC	60.179	55.000	0.00	0.00	41.67	4.61
2834	3708	0.616111	ACCTTGTTTGGTTGCCCACA	60.616	50.000	0.00	0.00	41.67	4.17
2835	3709	0.539051	CCTTGTTTGGTTGCCCACAA	59.461	50.000	0.00	0.00	41.67	3.33
2836	3710	1.065854	CCTTGTTTGGTTGCCCACAAA	60.066	47.619	0.00	0.00	41.67	2.83
2837	3711	2.616510	CCTTGTTTGGTTGCCCACAAAA	60.617	45.455	0.00	0.00	41.67	2.44
2838	3712	2.100605	TGTTTGGTTGCCCACAAAAC	57.899	45.000	8.56	8.56	46.24	2.43
2839	3713	2.100605	GTTTGGTTGCCCACAAAACA	57.899	45.000	10.07	0.00	45.59	2.83
2840	3714	1.735018	GTTTGGTTGCCCACAAAACAC	59.265	47.619	10.07	0.00	45.59	3.32
2841	3715	1.270907	TTGGTTGCCCACAAAACACT	58.729	45.000	0.00	0.00	41.67	3.55
2842	3716	0.534412	TGGTTGCCCACAAAACACTG	59.466	50.000	0.00	0.00	37.58	3.66
2843	3717	0.179086	GGTTGCCCACAAAACACTGG	60.179	55.000	0.00	0.00	37.58	4.00
2844	3718	0.820871	GTTGCCCACAAAACACTGGA	59.179	50.000	0.00	0.00	37.58	3.86
2845	3719	1.412343	GTTGCCCACAAAACACTGGAT	59.588	47.619	0.00	0.00	37.58	3.41
2846	3720	1.039068	TGCCCACAAAACACTGGATG	58.961	50.000	0.00	0.00	0.00	3.51
2847	3721	0.319813	GCCCACAAAACACTGGATGC	60.320	55.000	0.00	0.00	0.00	3.91
2848	3722	1.039068	CCCACAAAACACTGGATGCA	58.961	50.000	0.00	0.00	0.00	3.96
2849	3723	1.619827	CCCACAAAACACTGGATGCAT	59.380	47.619	0.00	0.00	0.00	3.96
2850	3724	2.037511	CCCACAAAACACTGGATGCATT	59.962	45.455	0.00	0.00	0.00	3.56
2851	3725	3.257873	CCCACAAAACACTGGATGCATTA	59.742	43.478	0.00	0.00	0.00	1.90
2852	3726	4.236935	CCACAAAACACTGGATGCATTAC	58.763	43.478	0.00	0.00	0.00	1.89
2853	3727	3.913763	CACAAAACACTGGATGCATTACG	59.086	43.478	0.00	0.00	0.00	3.18
2854	3728	3.057596	ACAAAACACTGGATGCATTACGG	60.058	43.478	0.00	5.09	0.00	4.02
2859	3733	2.039418	ACTGGATGCATTACGGCTAGA	58.961	47.619	0.00	0.00	34.04	2.43
2872	3746	1.806542	CGGCTAGAGCTGCAAGAAAAA	59.193	47.619	1.02	0.00	40.93	1.94
2879	3753	2.802816	GAGCTGCAAGAAAAACTCGAGA	59.197	45.455	21.68	0.00	34.07	4.04
2890	3764	0.889638	AACTCGAGACTCGTGAGCCA	60.890	55.000	28.20	7.60	41.35	4.75
2975	3850	5.386958	TGAACACTTTATGTAGCTCGACT	57.613	39.130	0.00	0.00	42.31	4.18
3002	3877	1.269778	CGAGCCGATCTTGAGCCAATA	60.270	52.381	0.00	0.00	0.00	1.90
3432	4308	1.141657	TGAGTTGAGCTGAGCCAACTT	59.858	47.619	28.86	18.77	43.97	2.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	1.964552	ATCAGCCACTATGAGCTTGC	58.035	50.000	0.00	0.00	37.18	4.01
53	54	6.092748	CACTAACAATCCAACCTAACAATGC	58.907	40.000	0.00	0.00	0.00	3.56
87	95	4.880120	CCACATGCACTTTCATCACTAGAT	59.120	41.667	0.00	0.00	33.87	1.98
209	262	1.280133	TCAAGAGGGCAGTTGGATCTG	59.720	52.381	0.00	0.00	38.35	2.90
491	563	9.144747	CATAGTGGTGAATAAATTCCGATCTAG	57.855	37.037	0.41	0.00	35.97	2.43
504	576	7.733630	CGATTTCGAGTACCATAGTGGTGAATA	60.734	40.741	11.74	0.00	46.61	1.75
512	584	4.205587	AGGACGATTTCGAGTACCATAGT	58.794	43.478	7.01	0.00	43.02	2.12
516	588	2.684881	GGTAGGACGATTTCGAGTACCA	59.315	50.000	7.01	0.00	43.02	3.25
583	655	4.558226	ATCTCAATGTTCAGCACCACTA	57.442	40.909	0.00	0.00	0.00	2.74
590	671	3.135530	AGGGAGGTATCTCAATGTTCAGC	59.864	47.826	5.14	0.00	41.69	4.26
602	683	5.104485	ACAGTTGGTTGATTAGGGAGGTATC	60.104	44.000	0.00	0.00	0.00	2.24
606	687	3.721087	ACAGTTGGTTGATTAGGGAGG	57.279	47.619	0.00	0.00	0.00	4.30
619	704	2.781681	ACCCTCCGAATAACAGTTGG	57.218	50.000	0.00	0.00	0.00	3.77
695	782	1.943507	GCCTCTGACTGAGCCAGAAAC	60.944	57.143	0.00	0.00	39.83	2.78
946	1669	3.545574	TGAGTGCGTGAGTGGCCA	61.546	61.111	0.00	0.00	0.00	5.36
957	1684	2.208431	GTGCATCCATCTAGTGAGTGC	58.792	52.381	0.00	3.07	38.02	4.40
2494	3346	2.997986	CAAAATCAAGAAGGCCATGTGC	59.002	45.455	5.01	0.00	40.16	4.57
2495	3347	4.240096	GACAAAATCAAGAAGGCCATGTG	58.760	43.478	5.01	0.00	0.00	3.21
2496	3348	3.896888	TGACAAAATCAAGAAGGCCATGT	59.103	39.130	5.01	0.00	33.02	3.21
2497	3349	4.524316	TGACAAAATCAAGAAGGCCATG	57.476	40.909	5.01	0.00	33.02	3.66
2649	3519	2.631062	TGACACCACAAGTACCTCGATT	59.369	45.455	0.00	0.00	0.00	3.34
2724	3594	3.335786	ACAATCATGGGCCAGATATCCAT	59.664	43.478	13.78	0.00	41.53	3.41
2732	3602	1.843368	ACTGAACAATCATGGGCCAG	58.157	50.000	13.78	4.37	34.37	4.85
2733	3603	2.307496	AACTGAACAATCATGGGCCA	57.693	45.000	9.61	9.61	34.37	5.36
2734	3604	3.328505	CAAAACTGAACAATCATGGGCC	58.671	45.455	0.00	0.00	34.37	5.80
2735	3605	2.738314	GCAAAACTGAACAATCATGGGC	59.262	45.455	0.00	0.00	34.37	5.36
2736	3606	4.261578	AGCAAAACTGAACAATCATGGG	57.738	40.909	0.00	0.00	34.37	4.00
2737	3607	6.017400	ACTAGCAAAACTGAACAATCATGG	57.983	37.500	0.00	0.00	34.37	3.66
2738	3608	7.648908	TGAAACTAGCAAAACTGAACAATCATG	59.351	33.333	0.00	0.00	34.37	3.07
2782	3656	3.357079	GATATGCAAGCGGGGCCG	61.357	66.667	0.00	0.00	43.09	6.13
2788	3662	0.892358	ATGGGCCAGATATGCAAGCG	60.892	55.000	13.78	0.00	0.00	4.68
2789	3663	0.601558	CATGGGCCAGATATGCAAGC	59.398	55.000	13.78	0.00	0.00	4.01
2832	3706	3.057596	CCGTAATGCATCCAGTGTTTTGT	60.058	43.478	0.00	0.00	0.00	2.83
2833	3707	3.500982	CCGTAATGCATCCAGTGTTTTG	58.499	45.455	0.00	0.00	0.00	2.44
2834	3708	2.094752	GCCGTAATGCATCCAGTGTTTT	60.095	45.455	0.00	0.00	0.00	2.43
2835	3709	1.472480	GCCGTAATGCATCCAGTGTTT	59.528	47.619	0.00	0.00	0.00	2.83
2836	3710	1.094785	GCCGTAATGCATCCAGTGTT	58.905	50.000	0.00	0.00	0.00	3.32
2837	3711	0.253044	AGCCGTAATGCATCCAGTGT	59.747	50.000	0.00	0.00	0.00	3.55
2838	3712	2.138320	CTAGCCGTAATGCATCCAGTG	58.862	52.381	0.00	0.00	0.00	3.66
2839	3713	2.036475	CTCTAGCCGTAATGCATCCAGT	59.964	50.000	0.00	0.00	0.00	4.00
2840	3714	2.681706	CTCTAGCCGTAATGCATCCAG	58.318	52.381	0.00	0.00	0.00	3.86
2841	3715	1.270305	GCTCTAGCCGTAATGCATCCA	60.270	52.381	0.00	0.00	34.31	3.41
2842	3716	1.001406	AGCTCTAGCCGTAATGCATCC	59.999	52.381	0.00	0.00	43.38	3.51
2843	3717	2.064762	CAGCTCTAGCCGTAATGCATC	58.935	52.381	0.00	0.00	43.38	3.91
2844	3718	1.875576	GCAGCTCTAGCCGTAATGCAT	60.876	52.381	0.00	0.00	43.38	3.96
2845	3719	0.530650	GCAGCTCTAGCCGTAATGCA	60.531	55.000	7.91	0.00	43.38	3.96
2846	3720	0.530650	TGCAGCTCTAGCCGTAATGC	60.531	55.000	6.27	6.27	43.38	3.56
2847	3721	1.863454	CTTGCAGCTCTAGCCGTAATG	59.137	52.381	0.00	0.00	43.38	1.90
2848	3722	1.757118	TCTTGCAGCTCTAGCCGTAAT	59.243	47.619	0.00	0.00	43.38	1.89
2849	3723	1.182667	TCTTGCAGCTCTAGCCGTAA	58.817	50.000	0.00	0.00	43.38	3.18
2850	3724	1.182667	TTCTTGCAGCTCTAGCCGTA	58.817	50.000	0.00	0.00	43.38	4.02
2851	3725	0.321671	TTTCTTGCAGCTCTAGCCGT	59.678	50.000	0.00	0.00	43.38	5.68
2852	3726	1.442769	TTTTCTTGCAGCTCTAGCCG	58.557	50.000	0.00	0.00	43.38	5.52
2853	3727	2.816672	AGTTTTTCTTGCAGCTCTAGCC	59.183	45.455	0.00	0.00	43.38	3.93
2854	3728	3.424170	CGAGTTTTTCTTGCAGCTCTAGC	60.424	47.826	0.00	0.00	42.49	3.42
2859	3733	2.545946	GTCTCGAGTTTTTCTTGCAGCT	59.454	45.455	13.13	0.00	0.00	4.24
2872	3746	1.302591	TGGCTCACGAGTCTCGAGT	60.303	57.895	28.33	4.25	43.74	4.18
2879	3753	0.603569	ATTTCGAGTGGCTCACGAGT	59.396	50.000	8.88	1.02	39.86	4.18
2975	3850	1.544246	TCAAGATCGGCTCGTTTCTCA	59.456	47.619	0.00	0.00	0.00	3.27
3002	3877	2.173569	AGCTAAAATCGAGGGAGCCAAT	59.826	45.455	7.53	0.00	33.50	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.