Multiple sequence alignment - TraesCS6A01G387000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G387000 chr6A 100.000 2579 0 0 1 2579 603645043 603647621 0.000000e+00 4763.0
1 TraesCS6A01G387000 chr6A 98.431 701 11 0 1879 2579 556537908 556538608 0.000000e+00 1234.0
2 TraesCS6A01G387000 chr6A 80.435 184 27 1 401 575 602635305 602635488 5.790000e-27 132.0
3 TraesCS6A01G387000 chr2D 98.571 700 10 0 1880 2579 52507540 52506841 0.000000e+00 1238.0
4 TraesCS6A01G387000 chr2D 93.765 417 24 2 1878 2294 164785665 164785251 2.180000e-175 625.0
5 TraesCS6A01G387000 chr2A 97.724 703 15 1 1878 2579 3592581 3591879 0.000000e+00 1208.0
6 TraesCS6A01G387000 chr2A 92.167 383 29 1 1878 2259 678829658 678830040 8.120000e-150 540.0
7 TraesCS6A01G387000 chr2A 88.793 116 12 1 166 281 195771613 195771727 9.620000e-30 141.0
8 TraesCS6A01G387000 chr7B 97.432 701 18 0 1879 2579 71068985 71068285 0.000000e+00 1195.0
9 TraesCS6A01G387000 chr7B 98.621 145 2 0 748 892 418047640 418047496 9.160000e-65 257.0
10 TraesCS6A01G387000 chr7B 90.265 113 11 0 169 281 463233894 463234006 5.750000e-32 148.0
11 TraesCS6A01G387000 chr7A 92.137 496 32 5 1877 2372 115836935 115837423 0.000000e+00 693.0
12 TraesCS6A01G387000 chr7A 97.037 135 4 0 758 892 679827820 679827954 7.180000e-56 228.0
13 TraesCS6A01G387000 chr6B 94.104 441 19 4 1380 1815 695284527 695284965 0.000000e+00 664.0
14 TraesCS6A01G387000 chr6B 92.991 428 16 2 899 1326 695284088 695284501 1.700000e-171 612.0
15 TraesCS6A01G387000 chr6B 89.744 234 13 7 280 511 695283743 695283967 3.250000e-74 289.0
16 TraesCS6A01G387000 chr6B 79.891 184 28 1 401 575 693072444 693072627 2.690000e-25 126.0
17 TraesCS6A01G387000 chr6B 80.702 171 19 4 416 575 672878019 672877852 1.250000e-23 121.0
18 TraesCS6A01G387000 chr6B 88.172 93 6 3 655 747 695284002 695284089 3.510000e-19 106.0
19 TraesCS6A01G387000 chrUn 97.059 374 11 0 2206 2579 175733998 175734371 4.680000e-177 630.0
20 TraesCS6A01G387000 chrUn 97.059 374 11 0 2206 2579 175737874 175738247 4.680000e-177 630.0
21 TraesCS6A01G387000 chrUn 97.059 374 11 0 2206 2579 333444693 333444320 4.680000e-177 630.0
22 TraesCS6A01G387000 chrUn 77.143 175 24 9 400 562 49171915 49172085 1.270000e-13 87.9
23 TraesCS6A01G387000 chrUn 77.143 175 24 9 400 562 252588785 252588955 1.270000e-13 87.9
24 TraesCS6A01G387000 chr5B 97.059 374 11 0 2206 2579 670467078 670467451 4.680000e-177 630.0
25 TraesCS6A01G387000 chr5B 89.474 114 12 0 168 281 540698632 540698519 7.440000e-31 145.0
26 TraesCS6A01G387000 chr3D 81.853 529 89 5 1878 2400 23089050 23089577 3.050000e-119 438.0
27 TraesCS6A01G387000 chr1B 98.639 147 2 0 746 892 99709302 99709156 7.080000e-66 261.0
28 TraesCS6A01G387000 chr3B 98.621 145 2 0 748 892 242878882 242878738 9.160000e-65 257.0
29 TraesCS6A01G387000 chr3B 98.621 145 2 0 748 892 458386895 458386751 9.160000e-65 257.0
30 TraesCS6A01G387000 chr3B 97.222 36 0 1 995 1029 642217905 642217870 2.770000e-05 60.2
31 TraesCS6A01G387000 chr2B 98.621 145 2 0 748 892 629099624 629099480 9.160000e-65 257.0
32 TraesCS6A01G387000 chr2B 89.474 114 12 0 168 281 26279823 26279936 7.440000e-31 145.0
33 TraesCS6A01G387000 chr1A 97.931 145 3 0 746 890 514129376 514129520 4.260000e-63 252.0
34 TraesCS6A01G387000 chr3A 98.582 141 2 0 750 890 192849031 192849171 1.530000e-62 250.0
35 TraesCS6A01G387000 chr3A 88.793 116 11 2 167 281 546697590 546697476 9.620000e-30 141.0
36 TraesCS6A01G387000 chr7D 95.862 145 6 0 748 892 353937733 353937877 4.290000e-58 235.0
37 TraesCS6A01G387000 chr7D 93.913 115 7 0 167 281 111471872 111471758 9.490000e-40 174.0
38 TraesCS6A01G387000 chr7D 77.835 194 26 8 400 577 39960676 39960484 1.260000e-18 104.0
39 TraesCS6A01G387000 chr5D 83.432 169 27 1 399 567 448131592 448131759 3.440000e-34 156.0
40 TraesCS6A01G387000 chr5D 89.474 114 12 0 168 281 58224561 58224448 7.440000e-31 145.0
41 TraesCS6A01G387000 chr4B 90.435 115 10 1 167 281 646594677 646594564 1.600000e-32 150.0
42 TraesCS6A01G387000 chr6D 89.474 114 12 0 168 281 82650399 82650512 7.440000e-31 145.0
43 TraesCS6A01G387000 chr4A 77.222 180 25 10 400 577 645915483 645915318 9.830000e-15 91.6
44 TraesCS6A01G387000 chr4A 77.222 180 25 10 400 577 645949765 645949600 9.830000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G387000 chr6A 603645043 603647621 2578 False 4763.00 4763 100.00000 1 2579 1 chr6A.!!$F3 2578
1 TraesCS6A01G387000 chr6A 556537908 556538608 700 False 1234.00 1234 98.43100 1879 2579 1 chr6A.!!$F1 700
2 TraesCS6A01G387000 chr2D 52506841 52507540 699 True 1238.00 1238 98.57100 1880 2579 1 chr2D.!!$R1 699
3 TraesCS6A01G387000 chr2A 3591879 3592581 702 True 1208.00 1208 97.72400 1878 2579 1 chr2A.!!$R1 701
4 TraesCS6A01G387000 chr7B 71068285 71068985 700 True 1195.00 1195 97.43200 1879 2579 1 chr7B.!!$R1 700
5 TraesCS6A01G387000 chr6B 695283743 695284965 1222 False 417.75 664 91.25275 280 1815 4 chr6B.!!$F2 1535
6 TraesCS6A01G387000 chrUn 175733998 175738247 4249 False 630.00 630 97.05900 2206 2579 2 chrUn.!!$F3 373
7 TraesCS6A01G387000 chr3D 23089050 23089577 527 False 438.00 438 81.85300 1878 2400 1 chr3D.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 797 0.036732 TCAAAACTCCGCTCCATGCT 59.963 50.0 0.0 0.0 40.11 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2553 4230 0.110678 TCCATTACAAACCGGCACCA 59.889 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.646447 TCTATGGTCTGTCACCTCCCT 59.354 52.381 0.00 0.00 46.98 4.20
23 24 0.618968 ATGGTCTGTCACCTCCCTCC 60.619 60.000 0.00 0.00 46.98 4.30
24 25 1.229209 GGTCTGTCACCTCCCTCCA 60.229 63.158 0.00 0.00 42.84 3.86
26 27 1.280457 GTCTGTCACCTCCCTCCAAT 58.720 55.000 0.00 0.00 0.00 3.16
28 29 1.909302 TCTGTCACCTCCCTCCAATTC 59.091 52.381 0.00 0.00 0.00 2.17
29 30 1.630369 CTGTCACCTCCCTCCAATTCA 59.370 52.381 0.00 0.00 0.00 2.57
31 32 0.991920 TCACCTCCCTCCAATTCACC 59.008 55.000 0.00 0.00 0.00 4.02
32 33 0.995024 CACCTCCCTCCAATTCACCT 59.005 55.000 0.00 0.00 0.00 4.00
33 34 1.065126 CACCTCCCTCCAATTCACCTC 60.065 57.143 0.00 0.00 0.00 3.85
34 35 0.548510 CCTCCCTCCAATTCACCTCC 59.451 60.000 0.00 0.00 0.00 4.30
36 37 0.919289 TCCCTCCAATTCACCTCCCC 60.919 60.000 0.00 0.00 0.00 4.81
37 38 1.615262 CCTCCAATTCACCTCCCCC 59.385 63.158 0.00 0.00 0.00 5.40
54 55 1.522900 CCCCCTCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
55 56 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
56 57 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
57 58 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
58 59 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
59 60 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
60 61 3.323403 CCTCTCTCTCTCTCTCTCTCTCC 59.677 56.522 0.00 0.00 0.00 3.71
61 62 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
62 63 4.361783 TCTCTCTCTCTCTCTCTCTCCAA 58.638 47.826 0.00 0.00 0.00 3.53
63 64 4.782691 TCTCTCTCTCTCTCTCTCTCCAAA 59.217 45.833 0.00 0.00 0.00 3.28
64 65 5.102953 TCTCTCTCTCTCTCTCTCCAAAG 57.897 47.826 0.00 0.00 0.00 2.77
65 66 4.782691 TCTCTCTCTCTCTCTCTCCAAAGA 59.217 45.833 0.00 0.00 0.00 2.52
66 67 5.429762 TCTCTCTCTCTCTCTCTCCAAAGAT 59.570 44.000 0.00 0.00 0.00 2.40
67 68 6.069440 TCTCTCTCTCTCTCTCTCCAAAGATT 60.069 42.308 0.00 0.00 0.00 2.40
68 69 6.122277 TCTCTCTCTCTCTCTCCAAAGATTC 58.878 44.000 0.00 0.00 0.00 2.52
69 70 4.881273 TCTCTCTCTCTCTCCAAAGATTCG 59.119 45.833 0.00 0.00 0.00 3.34
70 71 4.594970 TCTCTCTCTCTCCAAAGATTCGT 58.405 43.478 0.00 0.00 0.00 3.85
71 72 4.397730 TCTCTCTCTCTCCAAAGATTCGTG 59.602 45.833 0.00 0.00 0.00 4.35
73 74 3.165875 TCTCTCTCCAAAGATTCGTGGT 58.834 45.455 8.68 0.00 36.23 4.16
74 75 3.193691 TCTCTCTCCAAAGATTCGTGGTC 59.806 47.826 8.68 0.00 36.23 4.02
75 76 3.165875 TCTCTCCAAAGATTCGTGGTCT 58.834 45.455 8.68 0.00 36.23 3.85
76 77 3.056536 TCTCTCCAAAGATTCGTGGTCTG 60.057 47.826 8.68 3.09 36.23 3.51
77 78 2.028112 TCTCCAAAGATTCGTGGTCTGG 60.028 50.000 8.68 0.00 36.23 3.86
78 79 0.804989 CCAAAGATTCGTGGTCTGGC 59.195 55.000 2.23 0.00 0.00 4.85
79 80 0.804989 CAAAGATTCGTGGTCTGGCC 59.195 55.000 0.00 0.00 37.90 5.36
80 81 0.400213 AAAGATTCGTGGTCTGGCCA 59.600 50.000 4.71 4.71 46.95 5.36
92 93 4.667573 TGGTCTGGCCAACATAATTTGTA 58.332 39.130 7.01 0.00 45.94 2.41
94 95 4.947388 GGTCTGGCCAACATAATTTGTAGA 59.053 41.667 7.01 0.00 37.68 2.59
95 96 5.594317 GGTCTGGCCAACATAATTTGTAGAT 59.406 40.000 7.01 0.00 37.68 1.98
96 97 6.460123 GGTCTGGCCAACATAATTTGTAGATG 60.460 42.308 7.01 0.00 37.68 2.90
97 98 5.593909 TCTGGCCAACATAATTTGTAGATGG 59.406 40.000 7.01 0.00 37.68 3.51
98 99 4.648762 TGGCCAACATAATTTGTAGATGGG 59.351 41.667 0.61 0.00 37.68 4.00
99 100 4.039124 GGCCAACATAATTTGTAGATGGGG 59.961 45.833 0.00 4.23 37.68 4.96
100 101 4.039124 GCCAACATAATTTGTAGATGGGGG 59.961 45.833 9.81 3.99 37.68 5.40
101 102 4.039124 CCAACATAATTTGTAGATGGGGGC 59.961 45.833 0.00 0.00 37.68 5.80
102 103 4.814224 ACATAATTTGTAGATGGGGGCT 57.186 40.909 0.00 0.00 36.57 5.19
104 105 6.468972 ACATAATTTGTAGATGGGGGCTAT 57.531 37.500 0.00 0.00 36.57 2.97
105 106 6.248433 ACATAATTTGTAGATGGGGGCTATG 58.752 40.000 0.00 0.00 36.57 2.23
107 108 4.647564 ATTTGTAGATGGGGGCTATGAG 57.352 45.455 0.00 0.00 0.00 2.90
109 110 0.247736 GTAGATGGGGGCTATGAGCG 59.752 60.000 0.00 0.00 43.62 5.03
111 112 0.178932 AGATGGGGGCTATGAGCGTA 60.179 55.000 0.00 0.00 43.62 4.42
112 113 0.905357 GATGGGGGCTATGAGCGTAT 59.095 55.000 0.00 0.00 43.62 3.06
113 114 1.279271 GATGGGGGCTATGAGCGTATT 59.721 52.381 0.00 0.00 43.62 1.89
114 115 0.396435 TGGGGGCTATGAGCGTATTG 59.604 55.000 0.00 0.00 43.62 1.90
115 116 0.396811 GGGGGCTATGAGCGTATTGT 59.603 55.000 0.00 0.00 43.62 2.71
116 117 1.621814 GGGGGCTATGAGCGTATTGTA 59.378 52.381 0.00 0.00 43.62 2.41
117 118 2.612221 GGGGGCTATGAGCGTATTGTAC 60.612 54.545 0.00 0.00 43.62 2.90
131 132 5.813717 CGTATTGTACGTCACTATCCTTCA 58.186 41.667 0.00 0.00 46.41 3.02
133 134 6.359883 CGTATTGTACGTCACTATCCTTCATG 59.640 42.308 0.00 0.00 46.41 3.07
134 135 4.649088 TGTACGTCACTATCCTTCATGG 57.351 45.455 0.00 0.00 37.10 3.66
135 136 2.604046 ACGTCACTATCCTTCATGGC 57.396 50.000 0.00 0.00 35.26 4.40
136 137 1.831106 ACGTCACTATCCTTCATGGCA 59.169 47.619 0.00 0.00 35.26 4.92
137 138 2.236146 ACGTCACTATCCTTCATGGCAA 59.764 45.455 0.00 0.00 35.26 4.52
138 139 2.609459 CGTCACTATCCTTCATGGCAAC 59.391 50.000 0.00 0.00 35.26 4.17
160 161 2.009051 TGCATACATGTACTGCACTGC 58.991 47.619 25.77 21.60 40.75 4.40
161 162 2.009051 GCATACATGTACTGCACTGCA 58.991 47.619 23.71 3.11 35.96 4.41
162 163 2.223112 GCATACATGTACTGCACTGCAC 60.223 50.000 23.71 0.00 35.96 4.57
163 164 1.708822 TACATGTACTGCACTGCACG 58.291 50.000 0.08 0.00 33.79 5.34
165 166 1.004560 ATGTACTGCACTGCACGCT 60.005 52.632 0.00 0.00 33.79 5.07
166 167 0.603707 ATGTACTGCACTGCACGCTT 60.604 50.000 0.00 0.00 33.79 4.68
167 168 0.813610 TGTACTGCACTGCACGCTTT 60.814 50.000 0.00 0.00 33.79 3.51
168 169 0.307760 GTACTGCACTGCACGCTTTT 59.692 50.000 0.00 0.00 33.79 2.27
169 170 1.529438 GTACTGCACTGCACGCTTTTA 59.471 47.619 0.00 0.00 33.79 1.52
170 171 1.021202 ACTGCACTGCACGCTTTTAA 58.979 45.000 0.00 0.00 33.79 1.52
171 172 1.002468 ACTGCACTGCACGCTTTTAAG 60.002 47.619 0.00 0.00 33.79 1.85
172 173 1.264020 CTGCACTGCACGCTTTTAAGA 59.736 47.619 0.00 0.00 33.79 2.10
173 174 1.673400 TGCACTGCACGCTTTTAAGAA 59.327 42.857 0.00 0.00 31.71 2.52
174 175 2.098280 TGCACTGCACGCTTTTAAGAAA 59.902 40.909 0.00 0.00 31.71 2.52
175 176 3.112580 GCACTGCACGCTTTTAAGAAAA 58.887 40.909 0.00 0.00 0.00 2.29
176 177 3.549873 GCACTGCACGCTTTTAAGAAAAA 59.450 39.130 0.00 0.00 33.58 1.94
177 178 6.684461 TGCACTGCACGCTTTTAAGAAAAAG 61.684 40.000 0.00 6.30 42.90 2.27
202 203 7.764141 GGTTTTCCCCCGCTTTATATTATAA 57.236 36.000 0.00 0.00 0.00 0.98
203 204 8.180706 GGTTTTCCCCCGCTTTATATTATAAA 57.819 34.615 8.26 8.26 0.00 1.40
204 205 8.301720 GGTTTTCCCCCGCTTTATATTATAAAG 58.698 37.037 23.28 23.28 37.53 1.85
217 218 9.724839 TTTATATTATAAAGCAACGAACCAAGC 57.275 29.630 5.01 0.00 0.00 4.01
220 221 2.492019 AAAGCAACGAACCAAGCTTC 57.508 45.000 0.00 0.00 45.73 3.86
221 222 0.668535 AAGCAACGAACCAAGCTTCC 59.331 50.000 0.00 0.00 43.24 3.46
222 223 0.465460 AGCAACGAACCAAGCTTCCA 60.465 50.000 0.00 0.00 32.52 3.53
223 224 0.383949 GCAACGAACCAAGCTTCCAA 59.616 50.000 0.00 0.00 0.00 3.53
224 225 1.864029 GCAACGAACCAAGCTTCCAAC 60.864 52.381 0.00 0.00 0.00 3.77
225 226 1.403679 CAACGAACCAAGCTTCCAACA 59.596 47.619 0.00 0.00 0.00 3.33
226 227 1.021968 ACGAACCAAGCTTCCAACAC 58.978 50.000 0.00 0.00 0.00 3.32
227 228 1.021202 CGAACCAAGCTTCCAACACA 58.979 50.000 0.00 0.00 0.00 3.72
228 229 1.608590 CGAACCAAGCTTCCAACACAT 59.391 47.619 0.00 0.00 0.00 3.21
229 230 2.350772 CGAACCAAGCTTCCAACACATC 60.351 50.000 0.00 0.00 0.00 3.06
230 231 1.238439 ACCAAGCTTCCAACACATCG 58.762 50.000 0.00 0.00 0.00 3.84
231 232 1.202758 ACCAAGCTTCCAACACATCGA 60.203 47.619 0.00 0.00 0.00 3.59
232 233 2.086869 CCAAGCTTCCAACACATCGAT 58.913 47.619 0.00 0.00 0.00 3.59
233 234 3.270027 CCAAGCTTCCAACACATCGATA 58.730 45.455 0.00 0.00 0.00 2.92
234 235 3.063997 CCAAGCTTCCAACACATCGATAC 59.936 47.826 0.00 0.00 0.00 2.24
235 236 3.610040 AGCTTCCAACACATCGATACA 57.390 42.857 0.00 0.00 0.00 2.29
236 237 3.937814 AGCTTCCAACACATCGATACAA 58.062 40.909 0.00 0.00 0.00 2.41
238 239 4.393062 AGCTTCCAACACATCGATACAAAG 59.607 41.667 0.00 0.00 0.00 2.77
239 240 4.154195 GCTTCCAACACATCGATACAAAGT 59.846 41.667 0.00 0.00 0.00 2.66
241 242 6.672357 GCTTCCAACACATCGATACAAAGTAC 60.672 42.308 0.00 0.00 0.00 2.73
243 244 5.867174 TCCAACACATCGATACAAAGTACAG 59.133 40.000 0.00 0.00 0.00 2.74
244 245 5.637810 CCAACACATCGATACAAAGTACAGT 59.362 40.000 0.00 0.00 0.00 3.55
246 247 7.329962 CCAACACATCGATACAAAGTACAGTTA 59.670 37.037 0.00 0.00 0.00 2.24
248 249 8.462143 ACACATCGATACAAAGTACAGTTAAG 57.538 34.615 0.00 0.00 0.00 1.85
249 250 8.086522 ACACATCGATACAAAGTACAGTTAAGT 58.913 33.333 0.00 0.00 0.00 2.24
250 251 8.584600 CACATCGATACAAAGTACAGTTAAGTC 58.415 37.037 0.00 0.00 0.00 3.01
251 252 8.521176 ACATCGATACAAAGTACAGTTAAGTCT 58.479 33.333 0.00 0.00 0.00 3.24
252 253 9.355215 CATCGATACAAAGTACAGTTAAGTCTT 57.645 33.333 0.00 0.00 0.00 3.01
259 260 8.910944 ACAAAGTACAGTTAAGTCTTAGAGTCA 58.089 33.333 0.00 0.00 0.00 3.41
261 262 7.131498 AGTACAGTTAAGTCTTAGAGTCACG 57.869 40.000 0.00 0.00 0.00 4.35
262 263 4.796369 ACAGTTAAGTCTTAGAGTCACGC 58.204 43.478 0.00 0.00 0.00 5.34
265 266 4.082679 AGTTAAGTCTTAGAGTCACGCTGG 60.083 45.833 0.00 0.00 0.00 4.85
266 267 1.178276 AGTCTTAGAGTCACGCTGGG 58.822 55.000 0.00 0.00 0.00 4.45
267 268 0.173708 GTCTTAGAGTCACGCTGGGG 59.826 60.000 0.00 0.00 0.00 4.96
268 269 0.970937 TCTTAGAGTCACGCTGGGGG 60.971 60.000 0.00 0.00 0.00 5.40
273 274 4.947147 GTCACGCTGGGGGCACAA 62.947 66.667 0.00 0.00 41.91 3.33
274 275 4.947147 TCACGCTGGGGGCACAAC 62.947 66.667 0.00 0.00 41.91 3.32
306 308 3.483558 GCTGCACGTTTTCTTTCTCTTTG 59.516 43.478 0.00 0.00 0.00 2.77
331 334 3.049344 AGGAGAGTGGGTTTTCAACTCT 58.951 45.455 4.31 4.31 40.10 3.24
336 339 0.109723 TGGGTTTTCAACTCTCCGGG 59.890 55.000 0.00 0.00 31.48 5.73
338 341 1.235724 GGTTTTCAACTCTCCGGGTG 58.764 55.000 0.00 0.00 0.00 4.61
339 342 1.476291 GGTTTTCAACTCTCCGGGTGT 60.476 52.381 0.00 0.00 0.00 4.16
340 343 1.602377 GTTTTCAACTCTCCGGGTGTG 59.398 52.381 0.00 0.00 0.00 3.82
344 347 2.140792 AACTCTCCGGGTGTGTGCT 61.141 57.895 0.00 0.00 0.00 4.40
345 348 2.100879 AACTCTCCGGGTGTGTGCTC 62.101 60.000 0.00 0.00 0.00 4.26
492 495 6.437477 TGAGGAGCTCTACATAAGAACAAGAA 59.563 38.462 14.64 0.00 32.46 2.52
510 513 6.179756 ACAAGAATTTTGGGCTCAAAGTTTT 58.820 32.000 19.44 12.21 41.02 2.43
511 514 6.093909 ACAAGAATTTTGGGCTCAAAGTTTTG 59.906 34.615 19.44 22.33 41.02 2.44
512 515 5.988287 AGAATTTTGGGCTCAAAGTTTTGA 58.012 33.333 19.44 1.25 41.02 2.69
524 527 6.890663 TCAAAGTTTTGAGCACTGATTTTG 57.109 33.333 3.28 0.00 41.88 2.44
525 528 5.811613 TCAAAGTTTTGAGCACTGATTTTGG 59.188 36.000 3.28 0.00 41.88 3.28
526 529 5.343307 AAGTTTTGAGCACTGATTTTGGT 57.657 34.783 0.00 0.00 0.00 3.67
527 530 5.343307 AGTTTTGAGCACTGATTTTGGTT 57.657 34.783 0.00 0.00 0.00 3.67
528 531 5.733676 AGTTTTGAGCACTGATTTTGGTTT 58.266 33.333 0.00 0.00 0.00 3.27
557 560 7.712204 TGTGTACACCTTTCTCTACATGATA 57.288 36.000 22.91 0.00 0.00 2.15
558 561 8.306313 TGTGTACACCTTTCTCTACATGATAT 57.694 34.615 22.91 0.00 0.00 1.63
568 571 9.521503 CTTTCTCTACATGATATTTCTTGACGA 57.478 33.333 0.00 2.23 32.71 4.20
569 572 9.869757 TTTCTCTACATGATATTTCTTGACGAA 57.130 29.630 0.00 1.76 32.71 3.85
570 573 9.869757 TTCTCTACATGATATTTCTTGACGAAA 57.130 29.630 0.00 0.00 45.08 3.46
571 574 9.869757 TCTCTACATGATATTTCTTGACGAAAA 57.130 29.630 0.00 0.00 44.25 2.29
592 595 8.897809 CGAAAATTTTCTTCTTAAATACGCACA 58.102 29.630 24.53 0.00 35.07 4.57
595 598 9.744468 AAATTTTCTTCTTAAATACGCACAAGT 57.256 25.926 0.00 0.00 0.00 3.16
596 599 8.728088 ATTTTCTTCTTAAATACGCACAAGTG 57.272 30.769 0.00 0.00 0.00 3.16
597 600 6.854496 TTCTTCTTAAATACGCACAAGTGT 57.146 33.333 1.79 0.00 42.14 3.55
633 636 8.000127 TCTTTATAGAAAGAGGGAGGTAGACTC 59.000 40.741 8.45 0.00 44.94 3.36
644 647 3.940319 GAGGTAGACTCCCAAAAAGTCC 58.060 50.000 0.00 0.00 43.41 3.85
645 648 3.323775 AGGTAGACTCCCAAAAAGTCCA 58.676 45.455 0.00 0.00 43.41 4.02
647 650 3.072622 GGTAGACTCCCAAAAAGTCCACT 59.927 47.826 0.00 0.00 43.41 4.00
648 651 3.953542 AGACTCCCAAAAAGTCCACTT 57.046 42.857 0.00 0.00 43.41 3.16
649 652 9.749125 GAGGTAGACTCCCAAAAAGTCCACTTT 62.749 44.444 0.00 0.00 43.41 2.66
699 702 4.740268 ACGTTTGAGCGTATAGAATGTCA 58.260 39.130 0.00 0.00 43.83 3.58
761 764 4.513198 TTTGAATTTAAGGCCTGTTCGG 57.487 40.909 5.69 0.00 0.00 4.30
762 765 3.149005 TGAATTTAAGGCCTGTTCGGT 57.851 42.857 5.69 0.00 34.25 4.69
763 766 4.289238 TGAATTTAAGGCCTGTTCGGTA 57.711 40.909 5.69 0.00 34.25 4.02
764 767 4.850680 TGAATTTAAGGCCTGTTCGGTAT 58.149 39.130 5.69 0.00 34.25 2.73
765 768 4.879545 TGAATTTAAGGCCTGTTCGGTATC 59.120 41.667 5.69 0.00 34.25 2.24
766 769 4.772886 ATTTAAGGCCTGTTCGGTATCT 57.227 40.909 5.69 0.00 34.25 1.98
767 770 3.814005 TTAAGGCCTGTTCGGTATCTC 57.186 47.619 5.69 0.00 34.25 2.75
768 771 0.460311 AAGGCCTGTTCGGTATCTCG 59.540 55.000 5.69 0.00 34.25 4.04
769 772 1.591863 GGCCTGTTCGGTATCTCGC 60.592 63.158 0.00 0.00 34.25 5.03
770 773 1.591863 GCCTGTTCGGTATCTCGCC 60.592 63.158 0.00 0.00 34.25 5.54
771 774 1.813859 CCTGTTCGGTATCTCGCCA 59.186 57.895 0.00 0.00 0.00 5.69
772 775 0.249073 CCTGTTCGGTATCTCGCCAG 60.249 60.000 0.00 0.00 0.00 4.85
773 776 0.456221 CTGTTCGGTATCTCGCCAGT 59.544 55.000 0.00 0.00 0.00 4.00
774 777 0.892755 TGTTCGGTATCTCGCCAGTT 59.107 50.000 0.00 0.00 0.00 3.16
775 778 1.274167 TGTTCGGTATCTCGCCAGTTT 59.726 47.619 0.00 0.00 0.00 2.66
776 779 1.925185 GTTCGGTATCTCGCCAGTTTC 59.075 52.381 0.00 0.00 0.00 2.78
777 780 1.179152 TCGGTATCTCGCCAGTTTCA 58.821 50.000 0.00 0.00 0.00 2.69
778 781 1.546923 TCGGTATCTCGCCAGTTTCAA 59.453 47.619 0.00 0.00 0.00 2.69
779 782 2.028839 TCGGTATCTCGCCAGTTTCAAA 60.029 45.455 0.00 0.00 0.00 2.69
780 783 2.739913 CGGTATCTCGCCAGTTTCAAAA 59.260 45.455 0.00 0.00 0.00 2.44
781 784 3.424433 CGGTATCTCGCCAGTTTCAAAAC 60.424 47.826 0.00 0.00 39.17 2.43
783 786 4.142881 GGTATCTCGCCAGTTTCAAAACTC 60.143 45.833 5.17 0.00 45.65 3.01
784 787 2.218603 TCTCGCCAGTTTCAAAACTCC 58.781 47.619 5.17 0.13 45.65 3.85
785 788 0.941542 TCGCCAGTTTCAAAACTCCG 59.058 50.000 5.17 10.78 45.65 4.63
786 789 0.660300 CGCCAGTTTCAAAACTCCGC 60.660 55.000 5.17 9.01 45.65 5.54
787 790 0.668535 GCCAGTTTCAAAACTCCGCT 59.331 50.000 5.17 0.00 45.65 5.52
788 791 1.335051 GCCAGTTTCAAAACTCCGCTC 60.335 52.381 5.17 0.00 45.65 5.03
789 792 1.266989 CCAGTTTCAAAACTCCGCTCC 59.733 52.381 5.17 0.00 45.65 4.70
790 793 1.946768 CAGTTTCAAAACTCCGCTCCA 59.053 47.619 5.17 0.00 45.65 3.86
791 794 2.554032 CAGTTTCAAAACTCCGCTCCAT 59.446 45.455 5.17 0.00 45.65 3.41
792 795 2.554032 AGTTTCAAAACTCCGCTCCATG 59.446 45.455 2.30 0.00 45.65 3.66
793 796 0.881118 TTCAAAACTCCGCTCCATGC 59.119 50.000 0.00 0.00 38.57 4.06
794 797 0.036732 TCAAAACTCCGCTCCATGCT 59.963 50.000 0.00 0.00 40.11 3.79
795 798 1.277842 TCAAAACTCCGCTCCATGCTA 59.722 47.619 0.00 0.00 40.11 3.49
796 799 1.667724 CAAAACTCCGCTCCATGCTAG 59.332 52.381 0.00 0.00 40.11 3.42
797 800 0.179000 AAACTCCGCTCCATGCTAGG 59.821 55.000 0.00 0.00 40.11 3.02
798 801 0.687757 AACTCCGCTCCATGCTAGGA 60.688 55.000 0.00 0.00 40.11 2.94
804 807 4.816109 TCCATGCTAGGAGCTGGT 57.184 55.556 0.00 0.00 42.97 4.00
805 808 3.012153 TCCATGCTAGGAGCTGGTT 57.988 52.632 0.00 0.00 42.97 3.67
806 809 0.833287 TCCATGCTAGGAGCTGGTTC 59.167 55.000 0.00 0.00 42.97 3.62
807 810 0.179034 CCATGCTAGGAGCTGGTTCC 60.179 60.000 0.00 0.00 42.97 3.62
808 811 0.531532 CATGCTAGGAGCTGGTTCCG 60.532 60.000 0.00 0.00 42.97 4.30
809 812 0.687757 ATGCTAGGAGCTGGTTCCGA 60.688 55.000 0.00 0.00 42.97 4.55
810 813 1.323271 TGCTAGGAGCTGGTTCCGAG 61.323 60.000 8.68 8.68 42.97 4.63
811 814 1.439644 CTAGGAGCTGGTTCCGAGC 59.560 63.158 0.00 0.00 42.29 5.03
812 815 2.022240 CTAGGAGCTGGTTCCGAGCC 62.022 65.000 0.00 0.00 42.29 4.70
813 816 2.798445 TAGGAGCTGGTTCCGAGCCA 62.798 60.000 3.68 3.68 42.29 4.75
814 817 2.435059 GAGCTGGTTCCGAGCCAC 60.435 66.667 0.00 0.00 37.12 5.01
815 818 2.925170 AGCTGGTTCCGAGCCACT 60.925 61.111 0.00 0.76 37.12 4.00
816 819 2.435059 GCTGGTTCCGAGCCACTC 60.435 66.667 0.00 0.00 31.85 3.51
817 820 2.266055 CTGGTTCCGAGCCACTCC 59.734 66.667 0.00 0.00 31.85 3.85
818 821 3.649277 CTGGTTCCGAGCCACTCCG 62.649 68.421 0.00 0.00 31.85 4.63
819 822 3.692406 GGTTCCGAGCCACTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
820 823 2.345760 GGTTCCGAGCCACTCCGTA 61.346 63.158 0.00 0.00 0.00 4.02
821 824 1.139095 GTTCCGAGCCACTCCGTAG 59.861 63.158 0.00 0.00 0.00 3.51
834 837 4.420143 CGTAGGATTCCACTGCCG 57.580 61.111 5.29 0.00 0.00 5.69
835 838 1.883084 CGTAGGATTCCACTGCCGC 60.883 63.158 5.29 0.00 0.00 6.53
836 839 1.522569 GTAGGATTCCACTGCCGCT 59.477 57.895 5.29 0.00 0.00 5.52
837 840 0.530870 GTAGGATTCCACTGCCGCTC 60.531 60.000 5.29 0.00 0.00 5.03
838 841 1.686325 TAGGATTCCACTGCCGCTCC 61.686 60.000 5.29 0.00 0.00 4.70
839 842 2.514824 GATTCCACTGCCGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
840 843 3.011517 ATTCCACTGCCGCTCCCT 61.012 61.111 0.00 0.00 0.00 4.20
841 844 2.932130 GATTCCACTGCCGCTCCCTC 62.932 65.000 0.00 0.00 0.00 4.30
866 869 4.803426 GGAGTCGCAGCCGTGGAG 62.803 72.222 0.00 0.00 35.54 3.86
875 878 4.373116 GCCGTGGAGCCGAGTGAA 62.373 66.667 0.00 0.00 0.00 3.18
876 879 2.579201 CCGTGGAGCCGAGTGAAT 59.421 61.111 0.00 0.00 0.00 2.57
877 880 1.519455 CCGTGGAGCCGAGTGAATC 60.519 63.158 0.00 0.00 0.00 2.52
878 881 1.519455 CGTGGAGCCGAGTGAATCC 60.519 63.158 0.00 0.00 0.00 3.01
879 882 1.519455 GTGGAGCCGAGTGAATCCG 60.519 63.158 0.00 0.00 34.39 4.18
880 883 1.680989 TGGAGCCGAGTGAATCCGA 60.681 57.895 0.00 0.00 34.39 4.55
881 884 1.254975 TGGAGCCGAGTGAATCCGAA 61.255 55.000 0.00 0.00 34.39 4.30
882 885 0.806492 GGAGCCGAGTGAATCCGAAC 60.806 60.000 0.00 0.00 0.00 3.95
883 886 0.108804 GAGCCGAGTGAATCCGAACA 60.109 55.000 0.00 0.00 0.00 3.18
884 887 0.108615 AGCCGAGTGAATCCGAACAG 60.109 55.000 0.00 0.00 0.00 3.16
885 888 1.084370 GCCGAGTGAATCCGAACAGG 61.084 60.000 0.00 0.00 42.97 4.00
886 889 0.460284 CCGAGTGAATCCGAACAGGG 60.460 60.000 0.00 0.00 41.52 4.45
887 890 1.084370 CGAGTGAATCCGAACAGGGC 61.084 60.000 0.00 0.00 41.52 5.19
888 891 0.250513 GAGTGAATCCGAACAGGGCT 59.749 55.000 0.00 0.00 41.52 5.19
889 892 0.693049 AGTGAATCCGAACAGGGCTT 59.307 50.000 0.00 0.00 41.52 4.35
890 893 1.073923 AGTGAATCCGAACAGGGCTTT 59.926 47.619 0.00 0.00 41.52 3.51
891 894 2.304761 AGTGAATCCGAACAGGGCTTTA 59.695 45.455 0.00 0.00 41.52 1.85
892 895 2.418976 GTGAATCCGAACAGGGCTTTAC 59.581 50.000 0.00 0.00 41.52 2.01
893 896 2.304761 TGAATCCGAACAGGGCTTTACT 59.695 45.455 0.00 0.00 41.52 2.24
894 897 2.403252 ATCCGAACAGGGCTTTACTG 57.597 50.000 0.00 0.00 41.52 2.74
907 910 3.010420 GCTTTACTGTTCATGGAGGGTC 58.990 50.000 0.00 0.00 0.00 4.46
921 924 0.898320 AGGGTCTCCAACTGTCATCG 59.102 55.000 0.00 0.00 34.83 3.84
933 936 2.069273 CTGTCATCGACCACACCTTTC 58.931 52.381 0.00 0.00 0.00 2.62
968 971 2.729360 GGAAAACCATTTAACAGCACGC 59.271 45.455 0.00 0.00 0.00 5.34
994 997 5.713025 TGTATTAGACGCTTAAACGACCTT 58.287 37.500 5.08 0.00 36.70 3.50
1077 1080 2.343758 GCTGCTGGACTCCGTCAA 59.656 61.111 0.00 0.00 33.68 3.18
1112 1115 1.473257 GCTATCCATCGGCACTCACAA 60.473 52.381 0.00 0.00 0.00 3.33
1117 1120 0.445436 CATCGGCACTCACAAGAAGC 59.555 55.000 0.00 0.00 0.00 3.86
1166 1169 2.609459 GCTATGACCAACTCCATCAACG 59.391 50.000 0.00 0.00 0.00 4.10
1168 1171 3.634397 ATGACCAACTCCATCAACGAT 57.366 42.857 0.00 0.00 0.00 3.73
1194 1197 1.532921 GCTCGAGAGGATTGTCGTCAG 60.533 57.143 18.75 0.00 40.63 3.51
1275 1278 1.734465 CTCTTCAGCGTTTCCATCACC 59.266 52.381 0.00 0.00 0.00 4.02
1276 1279 1.071542 TCTTCAGCGTTTCCATCACCA 59.928 47.619 0.00 0.00 0.00 4.17
1278 1281 1.452110 TCAGCGTTTCCATCACCATG 58.548 50.000 0.00 0.00 0.00 3.66
1279 1282 0.179156 CAGCGTTTCCATCACCATGC 60.179 55.000 0.00 0.00 0.00 4.06
1280 1283 0.608856 AGCGTTTCCATCACCATGCA 60.609 50.000 0.00 0.00 0.00 3.96
1281 1284 0.457035 GCGTTTCCATCACCATGCAT 59.543 50.000 0.00 0.00 0.00 3.96
1282 1285 1.534595 GCGTTTCCATCACCATGCATC 60.535 52.381 0.00 0.00 0.00 3.91
1283 1286 1.066002 CGTTTCCATCACCATGCATCC 59.934 52.381 0.00 0.00 0.00 3.51
1284 1287 2.101783 GTTTCCATCACCATGCATCCA 58.898 47.619 0.00 0.00 0.00 3.41
1287 1290 1.029681 CCATCACCATGCATCCACAG 58.970 55.000 0.00 0.00 0.00 3.66
1319 1322 2.612200 CCGAAACGGCTTCACAAGA 58.388 52.632 0.00 0.00 41.17 3.02
1326 1329 2.073816 ACGGCTTCACAAGAATTACGG 58.926 47.619 0.00 0.00 32.31 4.02
1327 1330 1.396996 CGGCTTCACAAGAATTACGGG 59.603 52.381 0.00 0.00 32.31 5.28
1328 1331 1.132453 GGCTTCACAAGAATTACGGGC 59.868 52.381 0.00 0.00 32.31 6.13
1331 1334 1.448985 TCACAAGAATTACGGGCTGC 58.551 50.000 0.00 0.00 0.00 5.25
1333 1336 1.024579 ACAAGAATTACGGGCTGCCG 61.025 55.000 13.40 10.64 39.31 5.69
1334 1337 2.112815 AAGAATTACGGGCTGCCGC 61.113 57.895 13.40 4.81 36.58 6.53
1371 1374 3.827898 GACGGCCTCGAGGTCCAG 61.828 72.222 31.32 26.44 36.14 3.86
1375 1378 3.695606 GCCTCGAGGTCCAGCACA 61.696 66.667 31.43 0.00 37.57 4.57
1376 1379 3.023949 GCCTCGAGGTCCAGCACAT 62.024 63.158 31.43 0.00 37.57 3.21
1377 1380 1.599047 CCTCGAGGTCCAGCACATT 59.401 57.895 24.04 0.00 0.00 2.71
1378 1381 0.742281 CCTCGAGGTCCAGCACATTG 60.742 60.000 24.04 0.00 0.00 2.82
1379 1382 0.742281 CTCGAGGTCCAGCACATTGG 60.742 60.000 3.91 0.00 39.70 3.16
1380 1383 1.003355 CGAGGTCCAGCACATTGGT 60.003 57.895 0.00 0.00 39.35 3.67
1418 1421 1.731709 CATCATTTGCGTTGTCCTCGA 59.268 47.619 0.00 0.00 0.00 4.04
1454 1457 0.240145 TGTAGTCAAGGACGTCGCAG 59.760 55.000 9.92 1.28 37.67 5.18
1479 1484 0.689080 AGCGGACTCCAGATGACCAT 60.689 55.000 0.00 0.00 0.00 3.55
1484 1489 2.294791 GGACTCCAGATGACCATCTACG 59.705 54.545 11.73 6.17 45.78 3.51
1569 1574 3.397482 GCACACAATGGCCATGTTTTTA 58.603 40.909 21.63 0.00 0.00 1.52
1592 1597 5.710984 AGTTTACTGAAGTACTGACGATGG 58.289 41.667 0.00 0.00 0.00 3.51
1671 1676 6.293955 CGACCACAAACTCAAATATTCAGGTT 60.294 38.462 0.00 0.00 0.00 3.50
1674 1679 8.357402 ACCACAAACTCAAATATTCAGGTTTAC 58.643 33.333 10.26 0.00 0.00 2.01
1677 1682 8.504005 ACAAACTCAAATATTCAGGTTTACGAG 58.496 33.333 10.26 0.00 0.00 4.18
1717 1722 4.978186 TCACGGATTAGTTAGAGTTGTCG 58.022 43.478 0.00 0.00 0.00 4.35
1791 1799 3.411446 TGCGTTCTTCATGATTTCACCT 58.589 40.909 0.00 0.00 0.00 4.00
1792 1800 4.574892 TGCGTTCTTCATGATTTCACCTA 58.425 39.130 0.00 0.00 0.00 3.08
1815 1823 9.092876 CCTATATCACAACAAAGAAGAGAAGAC 57.907 37.037 0.00 0.00 0.00 3.01
1817 1825 6.857777 ATCACAACAAAGAAGAGAAGACAG 57.142 37.500 0.00 0.00 0.00 3.51
1818 1826 5.734720 TCACAACAAAGAAGAGAAGACAGT 58.265 37.500 0.00 0.00 0.00 3.55
1820 1828 4.878397 ACAACAAAGAAGAGAAGACAGTGG 59.122 41.667 0.00 0.00 0.00 4.00
1821 1829 4.762289 ACAAAGAAGAGAAGACAGTGGT 57.238 40.909 0.00 0.00 0.00 4.16
1823 1831 6.426646 ACAAAGAAGAGAAGACAGTGGTAT 57.573 37.500 0.00 0.00 0.00 2.73
1824 1832 6.459923 ACAAAGAAGAGAAGACAGTGGTATC 58.540 40.000 0.00 0.00 0.00 2.24
1825 1833 5.669164 AAGAAGAGAAGACAGTGGTATCC 57.331 43.478 0.00 0.00 0.00 2.59
1827 1835 2.753247 AGAGAAGACAGTGGTATCCCC 58.247 52.381 0.00 0.00 0.00 4.81
1828 1836 2.044492 AGAGAAGACAGTGGTATCCCCA 59.956 50.000 0.00 0.00 42.51 4.96
1839 1847 4.295905 TGGTATCCCCATCCTAGACTTT 57.704 45.455 0.00 0.00 38.72 2.66
1840 1848 5.427857 TGGTATCCCCATCCTAGACTTTA 57.572 43.478 0.00 0.00 38.72 1.85
1841 1849 5.152934 TGGTATCCCCATCCTAGACTTTAC 58.847 45.833 0.00 0.00 38.72 2.01
1842 1850 5.152934 GGTATCCCCATCCTAGACTTTACA 58.847 45.833 0.00 0.00 0.00 2.41
1843 1851 5.785940 GGTATCCCCATCCTAGACTTTACAT 59.214 44.000 0.00 0.00 0.00 2.29
1844 1852 6.272558 GGTATCCCCATCCTAGACTTTACATT 59.727 42.308 0.00 0.00 0.00 2.71
1845 1853 5.630415 TCCCCATCCTAGACTTTACATTG 57.370 43.478 0.00 0.00 0.00 2.82
1847 1855 4.166144 CCCCATCCTAGACTTTACATTGGT 59.834 45.833 0.00 0.00 0.00 3.67
1848 1856 5.126067 CCCATCCTAGACTTTACATTGGTG 58.874 45.833 0.00 0.00 0.00 4.17
1849 1857 4.576463 CCATCCTAGACTTTACATTGGTGC 59.424 45.833 0.00 0.00 0.00 5.01
1850 1858 5.431765 CATCCTAGACTTTACATTGGTGCT 58.568 41.667 0.00 0.00 0.00 4.40
1851 1859 5.499004 TCCTAGACTTTACATTGGTGCTT 57.501 39.130 0.00 0.00 0.00 3.91
1853 1861 3.923017 AGACTTTACATTGGTGCTTGC 57.077 42.857 0.00 0.00 0.00 4.01
1857 1865 4.959723 ACTTTACATTGGTGCTTGCATTT 58.040 34.783 0.00 0.00 0.00 2.32
1858 1866 5.367302 ACTTTACATTGGTGCTTGCATTTT 58.633 33.333 0.00 0.00 0.00 1.82
1859 1867 5.821995 ACTTTACATTGGTGCTTGCATTTTT 59.178 32.000 0.00 0.00 0.00 1.94
1860 1868 6.989169 ACTTTACATTGGTGCTTGCATTTTTA 59.011 30.769 0.00 0.00 0.00 1.52
1861 1869 7.171337 ACTTTACATTGGTGCTTGCATTTTTAG 59.829 33.333 0.00 0.00 0.00 1.85
1862 1870 5.212532 ACATTGGTGCTTGCATTTTTAGA 57.787 34.783 0.00 0.00 0.00 2.10
1864 1872 6.232692 ACATTGGTGCTTGCATTTTTAGAAT 58.767 32.000 0.00 0.00 0.00 2.40
1866 1874 7.229106 ACATTGGTGCTTGCATTTTTAGAATTT 59.771 29.630 0.00 0.00 0.00 1.82
1867 1875 8.719648 CATTGGTGCTTGCATTTTTAGAATTTA 58.280 29.630 0.00 0.00 0.00 1.40
1868 1876 8.845413 TTGGTGCTTGCATTTTTAGAATTTAT 57.155 26.923 0.00 0.00 0.00 1.40
1870 1878 9.282569 TGGTGCTTGCATTTTTAGAATTTATTT 57.717 25.926 0.00 0.00 0.00 1.40
2066 2075 8.989653 TTAACATGAGTAATACACGAATCACA 57.010 30.769 0.00 0.00 0.00 3.58
2145 2154 3.308402 CCTCCTTTGCCTGGATCAACTTA 60.308 47.826 0.00 0.00 32.56 2.24
2484 4161 3.269381 TCCCTTTGCTTACATCCAAGGAT 59.731 43.478 0.00 0.00 34.81 3.24
2553 4230 2.827715 CCTCGAGGCTTCCATAGGT 58.172 57.895 20.67 0.00 0.00 3.08
2558 4235 0.464554 GAGGCTTCCATAGGTGGTGC 60.465 60.000 0.00 1.36 46.16 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.836400 TTGGAGGGAGGTGACAGACC 60.836 60.000 0.00 0.00 46.58 3.85
7 8 1.280457 ATTGGAGGGAGGTGACAGAC 58.720 55.000 0.00 0.00 0.00 3.51
8 9 1.909302 GAATTGGAGGGAGGTGACAGA 59.091 52.381 0.00 0.00 0.00 3.41
9 10 1.630369 TGAATTGGAGGGAGGTGACAG 59.370 52.381 0.00 0.00 0.00 3.51
11 12 1.340114 GGTGAATTGGAGGGAGGTGAC 60.340 57.143 0.00 0.00 0.00 3.67
12 13 0.991920 GGTGAATTGGAGGGAGGTGA 59.008 55.000 0.00 0.00 0.00 4.02
13 14 0.995024 AGGTGAATTGGAGGGAGGTG 59.005 55.000 0.00 0.00 0.00 4.00
14 15 1.290134 GAGGTGAATTGGAGGGAGGT 58.710 55.000 0.00 0.00 0.00 3.85
15 16 0.548510 GGAGGTGAATTGGAGGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
17 18 0.919289 GGGGAGGTGAATTGGAGGGA 60.919 60.000 0.00 0.00 0.00 4.20
18 19 1.615262 GGGGAGGTGAATTGGAGGG 59.385 63.158 0.00 0.00 0.00 4.30
19 20 1.615262 GGGGGAGGTGAATTGGAGG 59.385 63.158 0.00 0.00 0.00 4.30
36 37 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
37 38 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
38 39 3.323403 GGAGAGAGAGAGAGAGAGAGAGG 59.677 56.522 0.00 0.00 0.00 3.69
39 40 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
40 41 3.994317 TGGAGAGAGAGAGAGAGAGAGA 58.006 50.000 0.00 0.00 0.00 3.10
42 43 4.782691 TCTTTGGAGAGAGAGAGAGAGAGA 59.217 45.833 0.00 0.00 0.00 3.10
43 44 5.102953 TCTTTGGAGAGAGAGAGAGAGAG 57.897 47.826 0.00 0.00 0.00 3.20
44 45 5.715439 ATCTTTGGAGAGAGAGAGAGAGA 57.285 43.478 0.00 0.00 34.85 3.10
45 46 5.008019 CGAATCTTTGGAGAGAGAGAGAGAG 59.992 48.000 0.00 0.00 34.85 3.20
46 47 4.881273 CGAATCTTTGGAGAGAGAGAGAGA 59.119 45.833 0.00 0.00 34.85 3.10
47 48 4.640201 ACGAATCTTTGGAGAGAGAGAGAG 59.360 45.833 0.00 0.00 34.85 3.20
48 49 4.397730 CACGAATCTTTGGAGAGAGAGAGA 59.602 45.833 0.00 0.00 34.85 3.10
50 51 3.445450 CCACGAATCTTTGGAGAGAGAGA 59.555 47.826 0.00 0.00 34.85 3.10
51 52 3.194542 ACCACGAATCTTTGGAGAGAGAG 59.805 47.826 4.96 0.00 36.28 3.20
52 53 3.165875 ACCACGAATCTTTGGAGAGAGA 58.834 45.455 4.96 0.00 36.28 3.10
53 54 3.194542 AGACCACGAATCTTTGGAGAGAG 59.805 47.826 4.96 0.00 36.28 3.20
54 55 3.056536 CAGACCACGAATCTTTGGAGAGA 60.057 47.826 4.96 0.00 36.28 3.10
55 56 3.257393 CAGACCACGAATCTTTGGAGAG 58.743 50.000 4.96 0.00 36.28 3.20
56 57 2.028112 CCAGACCACGAATCTTTGGAGA 60.028 50.000 4.96 0.00 36.28 3.71
57 58 2.350522 CCAGACCACGAATCTTTGGAG 58.649 52.381 4.96 0.00 36.28 3.86
58 59 1.610624 GCCAGACCACGAATCTTTGGA 60.611 52.381 4.96 0.00 36.28 3.53
59 60 0.804989 GCCAGACCACGAATCTTTGG 59.195 55.000 0.00 0.00 39.00 3.28
60 61 0.804989 GGCCAGACCACGAATCTTTG 59.195 55.000 0.00 0.00 38.86 2.77
61 62 0.400213 TGGCCAGACCACGAATCTTT 59.600 50.000 0.00 0.00 46.36 2.52
62 63 2.066340 TGGCCAGACCACGAATCTT 58.934 52.632 0.00 0.00 46.36 2.40
63 64 3.805928 TGGCCAGACCACGAATCT 58.194 55.556 0.00 0.00 46.36 2.40
71 72 4.947388 TCTACAAATTATGTTGGCCAGACC 59.053 41.667 5.11 0.00 43.63 3.85
73 74 5.593909 CCATCTACAAATTATGTTGGCCAGA 59.406 40.000 5.11 0.00 43.63 3.86
74 75 5.221303 CCCATCTACAAATTATGTTGGCCAG 60.221 44.000 5.11 0.00 43.63 4.85
75 76 4.648762 CCCATCTACAAATTATGTTGGCCA 59.351 41.667 0.00 0.00 43.63 5.36
76 77 4.039124 CCCCATCTACAAATTATGTTGGCC 59.961 45.833 0.00 0.00 43.63 5.36
77 78 4.039124 CCCCCATCTACAAATTATGTTGGC 59.961 45.833 0.00 0.00 43.63 4.52
78 79 4.039124 GCCCCCATCTACAAATTATGTTGG 59.961 45.833 0.00 2.43 43.63 3.77
79 80 4.895297 AGCCCCCATCTACAAATTATGTTG 59.105 41.667 0.00 0.00 43.63 3.33
80 81 5.142806 AGCCCCCATCTACAAATTATGTT 57.857 39.130 0.00 0.00 43.63 2.71
82 83 6.484288 TCATAGCCCCCATCTACAAATTATG 58.516 40.000 0.00 0.00 0.00 1.90
83 84 6.718593 TCATAGCCCCCATCTACAAATTAT 57.281 37.500 0.00 0.00 0.00 1.28
84 85 5.514834 GCTCATAGCCCCCATCTACAAATTA 60.515 44.000 0.00 0.00 34.48 1.40
85 86 4.751028 GCTCATAGCCCCCATCTACAAATT 60.751 45.833 0.00 0.00 34.48 1.82
86 87 3.245052 GCTCATAGCCCCCATCTACAAAT 60.245 47.826 0.00 0.00 34.48 2.32
87 88 2.106511 GCTCATAGCCCCCATCTACAAA 59.893 50.000 0.00 0.00 34.48 2.83
88 89 1.699634 GCTCATAGCCCCCATCTACAA 59.300 52.381 0.00 0.00 34.48 2.41
89 90 1.352083 GCTCATAGCCCCCATCTACA 58.648 55.000 0.00 0.00 34.48 2.74
90 91 0.247736 CGCTCATAGCCCCCATCTAC 59.752 60.000 0.00 0.00 38.18 2.59
92 93 0.178932 TACGCTCATAGCCCCCATCT 60.179 55.000 0.00 0.00 38.18 2.90
94 95 1.003580 CAATACGCTCATAGCCCCCAT 59.996 52.381 0.00 0.00 38.18 4.00
95 96 0.396435 CAATACGCTCATAGCCCCCA 59.604 55.000 0.00 0.00 38.18 4.96
96 97 0.396811 ACAATACGCTCATAGCCCCC 59.603 55.000 0.00 0.00 38.18 5.40
97 98 2.685100 GTACAATACGCTCATAGCCCC 58.315 52.381 0.00 0.00 38.18 5.80
98 99 2.325761 CGTACAATACGCTCATAGCCC 58.674 52.381 0.00 0.00 45.81 5.19
109 110 6.641314 CCATGAAGGATAGTGACGTACAATAC 59.359 42.308 0.00 0.00 41.22 1.89
111 112 5.601662 CCATGAAGGATAGTGACGTACAAT 58.398 41.667 0.00 0.00 41.22 2.71
112 113 4.679639 GCCATGAAGGATAGTGACGTACAA 60.680 45.833 0.00 0.00 41.22 2.41
113 114 3.181479 GCCATGAAGGATAGTGACGTACA 60.181 47.826 0.00 0.00 41.22 2.90
114 115 3.181479 TGCCATGAAGGATAGTGACGTAC 60.181 47.826 0.00 0.00 41.22 3.67
115 116 3.028130 TGCCATGAAGGATAGTGACGTA 58.972 45.455 0.00 0.00 41.22 3.57
116 117 1.831106 TGCCATGAAGGATAGTGACGT 59.169 47.619 0.00 0.00 41.22 4.34
117 118 2.602257 TGCCATGAAGGATAGTGACG 57.398 50.000 0.00 0.00 41.22 4.35
118 119 3.609853 TGTTGCCATGAAGGATAGTGAC 58.390 45.455 0.00 0.00 41.22 3.67
119 120 3.998913 TGTTGCCATGAAGGATAGTGA 57.001 42.857 0.00 0.00 41.22 3.41
141 142 2.009051 TGCAGTGCAGTACATGTATGC 58.991 47.619 15.37 22.70 40.40 3.14
142 143 2.029606 CGTGCAGTGCAGTACATGTATG 59.970 50.000 20.42 9.44 40.08 2.39
144 145 1.708822 CGTGCAGTGCAGTACATGTA 58.291 50.000 20.42 0.08 40.08 2.29
145 146 1.568612 GCGTGCAGTGCAGTACATGT 61.569 55.000 20.42 2.69 40.08 3.21
149 150 0.307760 AAAAGCGTGCAGTGCAGTAC 59.692 50.000 20.42 10.98 40.08 2.73
150 151 1.872388 TAAAAGCGTGCAGTGCAGTA 58.128 45.000 20.42 1.39 40.08 2.74
151 152 1.002468 CTTAAAAGCGTGCAGTGCAGT 60.002 47.619 20.42 3.03 40.08 4.40
152 153 1.264020 TCTTAAAAGCGTGCAGTGCAG 59.736 47.619 20.42 13.74 40.08 4.41
153 154 1.304254 TCTTAAAAGCGTGCAGTGCA 58.696 45.000 15.37 15.37 35.60 4.57
154 155 2.399396 TTCTTAAAAGCGTGCAGTGC 57.601 45.000 8.58 8.58 0.00 4.40
155 156 4.207019 CCTTTTTCTTAAAAGCGTGCAGTG 59.793 41.667 5.14 0.00 45.75 3.66
157 158 3.735746 CCCTTTTTCTTAAAAGCGTGCAG 59.264 43.478 5.14 0.00 45.75 4.41
158 159 3.131400 ACCCTTTTTCTTAAAAGCGTGCA 59.869 39.130 5.14 0.00 45.75 4.57
159 160 3.713288 ACCCTTTTTCTTAAAAGCGTGC 58.287 40.909 5.14 0.00 45.75 5.34
160 161 6.237996 GGAAAACCCTTTTTCTTAAAAGCGTG 60.238 38.462 9.17 0.27 46.80 5.34
161 162 5.813672 GGAAAACCCTTTTTCTTAAAAGCGT 59.186 36.000 9.17 1.00 46.80 5.07
162 163 5.235616 GGGAAAACCCTTTTTCTTAAAAGCG 59.764 40.000 9.17 0.45 46.80 4.68
163 164 6.613755 GGGAAAACCCTTTTTCTTAAAAGC 57.386 37.500 9.17 0.00 46.80 3.51
180 181 7.888424 GCTTTATAATATAAAGCGGGGGAAAA 58.112 34.615 30.20 0.57 46.31 2.29
181 182 7.457024 GCTTTATAATATAAAGCGGGGGAAA 57.543 36.000 30.20 1.00 46.31 3.13
192 193 9.116067 AGCTTGGTTCGTTGCTTTATAATATAA 57.884 29.630 0.00 0.00 30.96 0.98
193 194 8.671384 AGCTTGGTTCGTTGCTTTATAATATA 57.329 30.769 0.00 0.00 30.96 0.86
194 195 7.568199 AGCTTGGTTCGTTGCTTTATAATAT 57.432 32.000 0.00 0.00 30.96 1.28
195 196 6.995511 AGCTTGGTTCGTTGCTTTATAATA 57.004 33.333 0.00 0.00 30.96 0.98
196 197 5.897377 AGCTTGGTTCGTTGCTTTATAAT 57.103 34.783 0.00 0.00 30.96 1.28
197 198 5.335348 GGAAGCTTGGTTCGTTGCTTTATAA 60.335 40.000 2.10 0.00 44.47 0.98
198 199 4.155280 GGAAGCTTGGTTCGTTGCTTTATA 59.845 41.667 2.10 0.00 44.47 0.98
201 202 1.067060 GGAAGCTTGGTTCGTTGCTTT 59.933 47.619 2.10 0.00 44.47 3.51
202 203 0.668535 GGAAGCTTGGTTCGTTGCTT 59.331 50.000 2.10 0.00 46.69 3.91
203 204 0.465460 TGGAAGCTTGGTTCGTTGCT 60.465 50.000 2.10 0.00 37.37 3.91
204 205 0.383949 TTGGAAGCTTGGTTCGTTGC 59.616 50.000 2.10 0.00 0.00 4.17
206 207 1.404035 GTGTTGGAAGCTTGGTTCGTT 59.596 47.619 2.10 0.00 0.00 3.85
207 208 1.021968 GTGTTGGAAGCTTGGTTCGT 58.978 50.000 2.10 0.00 0.00 3.85
208 209 1.021202 TGTGTTGGAAGCTTGGTTCG 58.979 50.000 2.10 0.00 0.00 3.95
209 210 2.350772 CGATGTGTTGGAAGCTTGGTTC 60.351 50.000 2.10 4.19 0.00 3.62
212 213 1.522668 TCGATGTGTTGGAAGCTTGG 58.477 50.000 2.10 0.00 0.00 3.61
213 214 3.684305 TGTATCGATGTGTTGGAAGCTTG 59.316 43.478 2.10 0.00 0.00 4.01
214 215 3.937814 TGTATCGATGTGTTGGAAGCTT 58.062 40.909 8.54 0.00 0.00 3.74
215 216 3.610040 TGTATCGATGTGTTGGAAGCT 57.390 42.857 8.54 0.00 0.00 3.74
216 217 4.154195 ACTTTGTATCGATGTGTTGGAAGC 59.846 41.667 8.54 0.00 0.00 3.86
217 218 5.862924 ACTTTGTATCGATGTGTTGGAAG 57.137 39.130 8.54 5.28 0.00 3.46
220 221 5.637810 ACTGTACTTTGTATCGATGTGTTGG 59.362 40.000 8.54 0.00 0.00 3.77
221 222 6.706055 ACTGTACTTTGTATCGATGTGTTG 57.294 37.500 8.54 0.00 0.00 3.33
222 223 8.821147 TTAACTGTACTTTGTATCGATGTGTT 57.179 30.769 8.54 0.90 0.00 3.32
223 224 8.086522 ACTTAACTGTACTTTGTATCGATGTGT 58.913 33.333 8.54 2.36 0.00 3.72
224 225 8.462143 ACTTAACTGTACTTTGTATCGATGTG 57.538 34.615 8.54 0.00 0.00 3.21
225 226 8.521176 AGACTTAACTGTACTTTGTATCGATGT 58.479 33.333 8.54 0.00 0.00 3.06
226 227 8.912787 AGACTTAACTGTACTTTGTATCGATG 57.087 34.615 8.54 0.00 0.00 3.84
233 234 8.910944 TGACTCTAAGACTTAACTGTACTTTGT 58.089 33.333 0.00 0.00 0.00 2.83
234 235 9.182933 GTGACTCTAAGACTTAACTGTACTTTG 57.817 37.037 0.00 0.00 0.00 2.77
235 236 8.074972 CGTGACTCTAAGACTTAACTGTACTTT 58.925 37.037 0.00 0.00 0.00 2.66
236 237 7.583230 CGTGACTCTAAGACTTAACTGTACTT 58.417 38.462 0.00 0.00 0.00 2.24
238 239 5.794448 GCGTGACTCTAAGACTTAACTGTAC 59.206 44.000 0.00 0.00 0.00 2.90
239 240 5.704515 AGCGTGACTCTAAGACTTAACTGTA 59.295 40.000 0.00 0.00 0.00 2.74
241 242 4.854291 CAGCGTGACTCTAAGACTTAACTG 59.146 45.833 0.00 0.00 0.00 3.16
243 244 4.167268 CCAGCGTGACTCTAAGACTTAAC 58.833 47.826 0.00 0.00 0.00 2.01
244 245 3.192844 CCCAGCGTGACTCTAAGACTTAA 59.807 47.826 0.00 0.00 0.00 1.85
246 247 1.546476 CCCAGCGTGACTCTAAGACTT 59.454 52.381 0.00 0.00 0.00 3.01
248 249 0.173708 CCCCAGCGTGACTCTAAGAC 59.826 60.000 0.00 0.00 0.00 3.01
249 250 0.970937 CCCCCAGCGTGACTCTAAGA 60.971 60.000 0.00 0.00 0.00 2.10
250 251 1.517832 CCCCCAGCGTGACTCTAAG 59.482 63.158 0.00 0.00 0.00 2.18
251 252 2.656069 GCCCCCAGCGTGACTCTAA 61.656 63.158 0.00 0.00 0.00 2.10
252 253 3.075005 GCCCCCAGCGTGACTCTA 61.075 66.667 0.00 0.00 0.00 2.43
261 262 4.284550 TCCTGTTGTGCCCCCAGC 62.285 66.667 0.00 0.00 44.14 4.85
262 263 2.282462 GTCCTGTTGTGCCCCCAG 60.282 66.667 0.00 0.00 0.00 4.45
265 266 0.962356 CAGATGTCCTGTTGTGCCCC 60.962 60.000 0.00 0.00 38.10 5.80
266 267 1.589716 GCAGATGTCCTGTTGTGCCC 61.590 60.000 0.00 0.00 44.71 5.36
267 268 0.607489 AGCAGATGTCCTGTTGTGCC 60.607 55.000 0.00 0.00 44.71 5.01
268 269 0.520404 CAGCAGATGTCCTGTTGTGC 59.480 55.000 0.00 0.00 45.49 4.57
272 273 0.952497 CGTGCAGCAGATGTCCTGTT 60.952 55.000 0.00 0.00 44.71 3.16
273 274 1.375140 CGTGCAGCAGATGTCCTGT 60.375 57.895 0.00 0.00 44.71 4.00
274 275 0.952497 AACGTGCAGCAGATGTCCTG 60.952 55.000 0.00 0.00 45.67 3.86
306 308 4.933330 GTTGAAAACCCACTCTCCTTTTC 58.067 43.478 0.00 0.00 42.21 2.29
338 341 9.329913 CTAATTTACTGTTTATTGTGAGCACAC 57.670 33.333 7.39 7.39 46.09 3.82
339 342 9.278978 TCTAATTTACTGTTTATTGTGAGCACA 57.721 29.630 0.00 0.00 39.98 4.57
398 401 9.282247 GAGCATATTTCAAGTCACATAGTTTTG 57.718 33.333 0.00 0.00 0.00 2.44
414 417 6.969473 GCACCTAAGAAGTTTGAGCATATTTC 59.031 38.462 0.00 0.00 0.00 2.17
510 513 4.206375 TGAGAAACCAAAATCAGTGCTCA 58.794 39.130 0.00 0.00 0.00 4.26
511 514 4.836125 TGAGAAACCAAAATCAGTGCTC 57.164 40.909 0.00 0.00 0.00 4.26
512 515 4.586001 ACATGAGAAACCAAAATCAGTGCT 59.414 37.500 0.00 0.00 0.00 4.40
513 516 4.682860 CACATGAGAAACCAAAATCAGTGC 59.317 41.667 0.00 0.00 0.00 4.40
516 519 6.857964 GTGTACACATGAGAAACCAAAATCAG 59.142 38.462 21.14 0.00 0.00 2.90
519 522 5.833131 AGGTGTACACATGAGAAACCAAAAT 59.167 36.000 26.51 0.00 0.00 1.82
520 523 5.197451 AGGTGTACACATGAGAAACCAAAA 58.803 37.500 26.51 0.00 0.00 2.44
522 525 4.431416 AGGTGTACACATGAGAAACCAA 57.569 40.909 26.51 0.00 0.00 3.67
523 526 4.431416 AAGGTGTACACATGAGAAACCA 57.569 40.909 26.51 0.00 0.00 3.67
524 527 5.063880 AGAAAGGTGTACACATGAGAAACC 58.936 41.667 26.51 6.79 0.00 3.27
525 528 5.992217 AGAGAAAGGTGTACACATGAGAAAC 59.008 40.000 26.51 7.37 0.00 2.78
526 529 6.174720 AGAGAAAGGTGTACACATGAGAAA 57.825 37.500 26.51 0.00 0.00 2.52
527 530 5.808366 AGAGAAAGGTGTACACATGAGAA 57.192 39.130 26.51 0.00 0.00 2.87
528 531 5.773176 TGTAGAGAAAGGTGTACACATGAGA 59.227 40.000 26.51 1.57 0.00 3.27
569 572 9.744468 ACTTGTGCGTATTTAAGAAGAAAATTT 57.256 25.926 0.00 0.00 0.00 1.82
570 573 9.180678 CACTTGTGCGTATTTAAGAAGAAAATT 57.819 29.630 0.00 0.00 0.00 1.82
571 574 8.349983 ACACTTGTGCGTATTTAAGAAGAAAAT 58.650 29.630 0.10 0.00 0.00 1.82
573 576 7.129622 CACACTTGTGCGTATTTAAGAAGAAA 58.870 34.615 0.10 0.00 39.39 2.52
574 577 6.655062 CACACTTGTGCGTATTTAAGAAGAA 58.345 36.000 0.10 0.00 39.39 2.52
575 578 6.223138 CACACTTGTGCGTATTTAAGAAGA 57.777 37.500 0.10 0.00 39.39 2.87
608 611 8.173542 GAGTCTACCTCCCTCTTTCTATAAAG 57.826 42.308 0.00 0.00 37.83 1.85
623 626 3.326880 TGGACTTTTTGGGAGTCTACCTC 59.673 47.826 1.83 0.00 42.44 3.85
624 627 3.072622 GTGGACTTTTTGGGAGTCTACCT 59.927 47.826 1.83 0.00 44.83 3.08
628 631 3.953542 AAGTGGACTTTTTGGGAGTCT 57.046 42.857 4.49 0.00 42.44 3.24
653 656 8.964150 CGTTTTAGCTGCTTGTAAATTTTAGTT 58.036 29.630 7.79 0.00 0.00 2.24
654 657 8.132995 ACGTTTTAGCTGCTTGTAAATTTTAGT 58.867 29.630 7.79 2.03 0.00 2.24
655 658 8.502161 ACGTTTTAGCTGCTTGTAAATTTTAG 57.498 30.769 7.79 0.00 0.00 1.85
656 659 8.859517 AACGTTTTAGCTGCTTGTAAATTTTA 57.140 26.923 7.79 0.00 0.00 1.52
738 741 5.163395 ACCGAACAGGCCTTAAATTCAAAAA 60.163 36.000 0.00 0.00 46.52 1.94
741 744 3.492337 ACCGAACAGGCCTTAAATTCAA 58.508 40.909 0.00 0.00 46.52 2.69
742 745 3.149005 ACCGAACAGGCCTTAAATTCA 57.851 42.857 0.00 0.00 46.52 2.57
743 746 5.123936 AGATACCGAACAGGCCTTAAATTC 58.876 41.667 0.00 4.01 46.52 2.17
744 747 5.112129 AGATACCGAACAGGCCTTAAATT 57.888 39.130 0.00 0.00 46.52 1.82
745 748 4.704965 GAGATACCGAACAGGCCTTAAAT 58.295 43.478 0.00 0.00 46.52 1.40
746 749 3.429822 CGAGATACCGAACAGGCCTTAAA 60.430 47.826 0.00 0.00 46.52 1.52
747 750 2.100252 CGAGATACCGAACAGGCCTTAA 59.900 50.000 0.00 0.00 46.52 1.85
748 751 1.679680 CGAGATACCGAACAGGCCTTA 59.320 52.381 0.00 0.00 46.52 2.69
749 752 0.460311 CGAGATACCGAACAGGCCTT 59.540 55.000 0.00 0.00 46.52 4.35
750 753 2.017559 GCGAGATACCGAACAGGCCT 62.018 60.000 0.00 0.00 46.52 5.19
751 754 1.591863 GCGAGATACCGAACAGGCC 60.592 63.158 0.00 0.00 46.52 5.19
752 755 1.591863 GGCGAGATACCGAACAGGC 60.592 63.158 0.00 0.00 46.52 4.85
754 757 0.456221 ACTGGCGAGATACCGAACAG 59.544 55.000 1.44 0.00 39.88 3.16
755 758 0.892755 AACTGGCGAGATACCGAACA 59.107 50.000 1.44 0.00 0.00 3.18
756 759 1.925185 GAAACTGGCGAGATACCGAAC 59.075 52.381 1.44 0.00 0.00 3.95
757 760 1.546923 TGAAACTGGCGAGATACCGAA 59.453 47.619 1.44 0.00 0.00 4.30
758 761 1.179152 TGAAACTGGCGAGATACCGA 58.821 50.000 1.44 0.00 0.00 4.69
759 762 2.004583 TTGAAACTGGCGAGATACCG 57.995 50.000 1.44 0.00 0.00 4.02
760 763 3.751698 AGTTTTGAAACTGGCGAGATACC 59.248 43.478 1.44 0.00 46.80 2.73
772 775 2.922335 GCATGGAGCGGAGTTTTGAAAC 60.922 50.000 0.00 0.00 39.17 2.78
773 776 1.269448 GCATGGAGCGGAGTTTTGAAA 59.731 47.619 0.00 0.00 0.00 2.69
774 777 0.881118 GCATGGAGCGGAGTTTTGAA 59.119 50.000 0.00 0.00 0.00 2.69
775 778 2.555123 GCATGGAGCGGAGTTTTGA 58.445 52.632 0.00 0.00 0.00 2.69
787 790 0.833287 GAACCAGCTCCTAGCATGGA 59.167 55.000 18.22 0.00 45.56 3.41
788 791 0.179034 GGAACCAGCTCCTAGCATGG 60.179 60.000 12.77 12.77 45.56 3.66
789 792 0.531532 CGGAACCAGCTCCTAGCATG 60.532 60.000 1.22 0.00 45.56 4.06
790 793 0.687757 TCGGAACCAGCTCCTAGCAT 60.688 55.000 1.22 0.00 45.56 3.79
791 794 1.304962 TCGGAACCAGCTCCTAGCA 60.305 57.895 1.22 0.00 45.56 3.49
792 795 1.439644 CTCGGAACCAGCTCCTAGC 59.560 63.158 0.00 0.00 42.84 3.42
793 796 1.439644 GCTCGGAACCAGCTCCTAG 59.560 63.158 0.00 0.00 33.75 3.02
794 797 2.058595 GGCTCGGAACCAGCTCCTA 61.059 63.158 12.30 0.00 37.05 2.94
795 798 3.394836 GGCTCGGAACCAGCTCCT 61.395 66.667 12.30 0.00 37.05 3.69
796 799 3.706373 TGGCTCGGAACCAGCTCC 61.706 66.667 0.00 0.00 37.05 4.70
797 800 2.435059 GTGGCTCGGAACCAGCTC 60.435 66.667 0.00 0.00 38.04 4.09
798 801 2.925170 AGTGGCTCGGAACCAGCT 60.925 61.111 0.00 0.00 38.04 4.24
799 802 2.435059 GAGTGGCTCGGAACCAGC 60.435 66.667 0.00 0.00 38.04 4.85
800 803 2.266055 GGAGTGGCTCGGAACCAG 59.734 66.667 0.00 0.00 38.04 4.00
801 804 3.691342 CGGAGTGGCTCGGAACCA 61.691 66.667 0.00 0.00 33.52 3.67
802 805 2.280823 CTACGGAGTGGCTCGGAACC 62.281 65.000 10.03 0.00 45.73 3.62
803 806 1.139095 CTACGGAGTGGCTCGGAAC 59.861 63.158 10.03 0.00 45.73 3.62
804 807 2.050350 CCTACGGAGTGGCTCGGAA 61.050 63.158 10.03 0.00 45.73 4.30
805 808 2.280404 ATCCTACGGAGTGGCTCGGA 62.280 60.000 10.03 2.66 45.73 4.55
806 809 1.392710 AATCCTACGGAGTGGCTCGG 61.393 60.000 0.00 2.79 45.73 4.63
807 810 0.030908 GAATCCTACGGAGTGGCTCG 59.969 60.000 0.00 0.00 45.73 5.03
808 811 0.389757 GGAATCCTACGGAGTGGCTC 59.610 60.000 0.00 0.00 45.73 4.70
809 812 0.325296 TGGAATCCTACGGAGTGGCT 60.325 55.000 0.00 0.00 45.73 4.75
810 813 0.179081 GTGGAATCCTACGGAGTGGC 60.179 60.000 0.00 0.00 45.73 5.01
811 814 1.137086 CAGTGGAATCCTACGGAGTGG 59.863 57.143 0.00 0.00 45.73 4.00
812 815 1.471676 GCAGTGGAATCCTACGGAGTG 60.472 57.143 0.00 0.00 45.73 3.51
814 817 0.105039 GGCAGTGGAATCCTACGGAG 59.895 60.000 0.00 0.00 34.05 4.63
815 818 1.672854 CGGCAGTGGAATCCTACGGA 61.673 60.000 0.00 0.00 35.55 4.69
816 819 1.227263 CGGCAGTGGAATCCTACGG 60.227 63.158 0.00 0.00 0.00 4.02
817 820 1.883084 GCGGCAGTGGAATCCTACG 60.883 63.158 0.00 0.00 0.00 3.51
818 821 0.530870 GAGCGGCAGTGGAATCCTAC 60.531 60.000 1.45 0.00 0.00 3.18
819 822 1.686325 GGAGCGGCAGTGGAATCCTA 61.686 60.000 1.45 0.00 0.00 2.94
820 823 2.586792 GAGCGGCAGTGGAATCCT 59.413 61.111 1.45 0.00 0.00 3.24
821 824 2.514824 GGAGCGGCAGTGGAATCC 60.515 66.667 1.45 0.00 0.00 3.01
822 825 2.514824 GGGAGCGGCAGTGGAATC 60.515 66.667 1.45 0.00 0.00 2.52
823 826 3.011517 AGGGAGCGGCAGTGGAAT 61.012 61.111 1.45 0.00 0.00 3.01
824 827 3.706373 GAGGGAGCGGCAGTGGAA 61.706 66.667 1.45 0.00 0.00 3.53
849 852 4.803426 CTCCACGGCTGCGACTCC 62.803 72.222 0.00 0.00 0.00 3.85
858 861 3.665675 ATTCACTCGGCTCCACGGC 62.666 63.158 0.00 0.00 0.00 5.68
859 862 1.519455 GATTCACTCGGCTCCACGG 60.519 63.158 0.00 0.00 0.00 4.94
860 863 1.519455 GGATTCACTCGGCTCCACG 60.519 63.158 0.00 0.00 0.00 4.94
861 864 1.519455 CGGATTCACTCGGCTCCAC 60.519 63.158 0.00 0.00 0.00 4.02
862 865 1.254975 TTCGGATTCACTCGGCTCCA 61.255 55.000 0.00 0.00 0.00 3.86
863 866 0.806492 GTTCGGATTCACTCGGCTCC 60.806 60.000 0.00 0.00 0.00 4.70
864 867 0.108804 TGTTCGGATTCACTCGGCTC 60.109 55.000 0.00 0.00 0.00 4.70
865 868 0.108615 CTGTTCGGATTCACTCGGCT 60.109 55.000 0.00 0.00 0.00 5.52
866 869 1.084370 CCTGTTCGGATTCACTCGGC 61.084 60.000 0.00 0.00 33.16 5.54
867 870 0.460284 CCCTGTTCGGATTCACTCGG 60.460 60.000 0.00 0.00 33.16 4.63
868 871 1.084370 GCCCTGTTCGGATTCACTCG 61.084 60.000 0.00 0.00 33.16 4.18
869 872 0.250513 AGCCCTGTTCGGATTCACTC 59.749 55.000 0.00 0.00 33.16 3.51
870 873 0.693049 AAGCCCTGTTCGGATTCACT 59.307 50.000 0.00 0.00 33.16 3.41
871 874 1.534729 AAAGCCCTGTTCGGATTCAC 58.465 50.000 0.00 0.00 27.63 3.18
872 875 2.304761 AGTAAAGCCCTGTTCGGATTCA 59.695 45.455 0.00 0.00 27.63 2.57
873 876 2.678336 CAGTAAAGCCCTGTTCGGATTC 59.322 50.000 0.00 0.00 27.63 2.52
874 877 2.039879 ACAGTAAAGCCCTGTTCGGATT 59.960 45.455 0.00 0.00 40.14 3.01
875 878 1.628846 ACAGTAAAGCCCTGTTCGGAT 59.371 47.619 0.00 0.00 40.14 4.18
876 879 1.053424 ACAGTAAAGCCCTGTTCGGA 58.947 50.000 0.00 0.00 40.14 4.55
877 880 3.625745 ACAGTAAAGCCCTGTTCGG 57.374 52.632 0.00 0.00 40.14 4.30
881 884 2.375174 TCCATGAACAGTAAAGCCCTGT 59.625 45.455 0.00 0.00 44.80 4.00
882 885 3.012518 CTCCATGAACAGTAAAGCCCTG 58.987 50.000 0.00 0.00 36.01 4.45
883 886 2.025887 CCTCCATGAACAGTAAAGCCCT 60.026 50.000 0.00 0.00 0.00 5.19
884 887 2.369394 CCTCCATGAACAGTAAAGCCC 58.631 52.381 0.00 0.00 0.00 5.19
885 888 2.290960 ACCCTCCATGAACAGTAAAGCC 60.291 50.000 0.00 0.00 0.00 4.35
886 889 3.010420 GACCCTCCATGAACAGTAAAGC 58.990 50.000 0.00 0.00 0.00 3.51
887 890 4.508662 GAGACCCTCCATGAACAGTAAAG 58.491 47.826 0.00 0.00 0.00 1.85
888 891 4.553330 GAGACCCTCCATGAACAGTAAA 57.447 45.455 0.00 0.00 0.00 2.01
907 910 1.000843 TGTGGTCGATGACAGTTGGAG 59.999 52.381 0.00 0.00 33.68 3.86
921 924 1.604278 GCTGTTCAGAAAGGTGTGGTC 59.396 52.381 3.84 0.00 0.00 4.02
933 936 2.459934 GTTTTCCCAAACGCTGTTCAG 58.540 47.619 0.00 0.00 33.21 3.02
961 964 1.522676 CGTCTAATACATGGCGTGCTG 59.477 52.381 6.62 0.00 0.00 4.41
968 971 5.051240 GGTCGTTTAAGCGTCTAATACATGG 60.051 44.000 11.58 0.00 0.00 3.66
994 997 0.846427 AGGAGGAAGGCCATGGTTCA 60.846 55.000 14.67 0.00 36.29 3.18
1112 1115 2.158957 TCAACACAACGAAGGAGCTTCT 60.159 45.455 0.00 0.00 38.24 2.85
1117 1120 1.795286 GAGCTCAACACAACGAAGGAG 59.205 52.381 9.40 0.00 0.00 3.69
1166 1169 1.579084 ATCCTCTCGAGCGCGGTATC 61.579 60.000 12.41 0.00 38.28 2.24
1168 1171 1.822613 AATCCTCTCGAGCGCGGTA 60.823 57.895 12.41 0.00 38.28 4.02
1194 1197 2.512515 GCAGCTCCGGTGATGACC 60.513 66.667 24.79 4.85 39.14 4.02
1272 1275 1.100510 CTTCCTGTGGATGCATGGTG 58.899 55.000 2.46 0.00 0.00 4.17
1283 1286 1.528129 GGAAACCAGAGCTTCCTGTG 58.472 55.000 2.09 0.00 38.48 3.66
1284 1287 0.035458 CGGAAACCAGAGCTTCCTGT 59.965 55.000 2.09 0.00 39.23 4.00
1287 1290 1.535896 GTTTCGGAAACCAGAGCTTCC 59.464 52.381 20.30 0.00 38.20 3.46
1354 1357 3.827898 CTGGACCTCGAGGCCGTC 61.828 72.222 31.56 20.59 39.32 4.79
1357 1360 4.459089 GTGCTGGACCTCGAGGCC 62.459 72.222 31.56 29.50 39.32 5.19
1358 1361 2.527951 AATGTGCTGGACCTCGAGGC 62.528 60.000 31.56 22.36 39.32 4.70
1359 1362 0.742281 CAATGTGCTGGACCTCGAGG 60.742 60.000 30.11 30.11 42.17 4.63
1361 1364 1.296392 CCAATGTGCTGGACCTCGA 59.704 57.895 0.00 0.00 38.96 4.04
1362 1365 1.003355 ACCAATGTGCTGGACCTCG 60.003 57.895 0.00 0.00 38.96 4.63
1363 1366 0.036732 TCACCAATGTGCTGGACCTC 59.963 55.000 0.00 0.00 42.46 3.85
1364 1367 0.037303 CTCACCAATGTGCTGGACCT 59.963 55.000 0.00 0.00 42.46 3.85
1365 1368 1.589716 GCTCACCAATGTGCTGGACC 61.590 60.000 0.00 0.00 42.46 4.46
1366 1369 1.589716 GGCTCACCAATGTGCTGGAC 61.590 60.000 0.00 0.00 43.44 4.02
1367 1370 1.303561 GGCTCACCAATGTGCTGGA 60.304 57.895 0.00 0.00 43.44 3.86
1368 1371 2.345760 GGGCTCACCAATGTGCTGG 61.346 63.158 1.86 0.00 43.44 4.85
1369 1372 2.345760 GGGGCTCACCAATGTGCTG 61.346 63.158 1.86 0.00 43.44 4.41
1370 1373 2.036256 GGGGCTCACCAATGTGCT 59.964 61.111 1.86 0.00 43.44 4.40
1371 1374 2.036256 AGGGGCTCACCAATGTGC 59.964 61.111 0.00 0.00 42.46 4.57
1372 1375 1.746615 CGAGGGGCTCACCAATGTG 60.747 63.158 0.00 0.00 42.91 3.21
1373 1376 2.671070 CGAGGGGCTCACCAATGT 59.329 61.111 0.00 0.00 42.91 2.71
1375 1378 4.473520 CGCGAGGGGCTCACCAAT 62.474 66.667 0.00 0.00 42.91 3.16
1418 1421 3.560251 AGGCTTCACCGGTGTGCT 61.560 61.111 34.93 25.01 46.52 4.40
1435 1438 0.240145 CTGCGACGTCCTTGACTACA 59.760 55.000 10.58 0.00 0.00 2.74
1454 1457 4.803426 CTGGAGTCCGCTGTCCGC 62.803 72.222 4.30 0.00 35.37 5.54
1552 1557 6.928492 CAGTAAACTAAAAACATGGCCATTGT 59.072 34.615 17.92 14.98 0.00 2.71
1554 1559 7.296628 TCAGTAAACTAAAAACATGGCCATT 57.703 32.000 17.92 4.32 0.00 3.16
1569 1574 5.475909 TCCATCGTCAGTACTTCAGTAAACT 59.524 40.000 0.00 0.00 31.52 2.66
1671 1676 9.932207 TGAGTATAGAAAATTTGGTTCTCGTAA 57.068 29.630 0.00 0.00 36.69 3.18
1674 1679 7.391786 CGTGAGTATAGAAAATTTGGTTCTCG 58.608 38.462 0.00 0.00 36.69 4.04
1677 1682 7.605410 TCCGTGAGTATAGAAAATTTGGTTC 57.395 36.000 0.00 0.00 0.00 3.62
1778 1786 9.460019 TTTGTTGTGATATAGGTGAAATCATGA 57.540 29.630 0.00 0.00 32.60 3.07
1791 1799 9.645059 CTGTCTTCTCTTCTTTGTTGTGATATA 57.355 33.333 0.00 0.00 0.00 0.86
1792 1800 8.153550 ACTGTCTTCTCTTCTTTGTTGTGATAT 58.846 33.333 0.00 0.00 0.00 1.63
1820 1828 6.936968 ATGTAAAGTCTAGGATGGGGATAC 57.063 41.667 0.00 0.00 0.00 2.24
1821 1829 6.272324 CCAATGTAAAGTCTAGGATGGGGATA 59.728 42.308 0.00 0.00 0.00 2.59
1823 1831 4.412199 CCAATGTAAAGTCTAGGATGGGGA 59.588 45.833 0.00 0.00 0.00 4.81
1824 1832 4.166144 ACCAATGTAAAGTCTAGGATGGGG 59.834 45.833 0.00 0.00 0.00 4.96
1825 1833 5.126067 CACCAATGTAAAGTCTAGGATGGG 58.874 45.833 0.00 0.00 0.00 4.00
1827 1835 5.431765 AGCACCAATGTAAAGTCTAGGATG 58.568 41.667 0.00 0.00 0.00 3.51
1828 1836 5.700402 AGCACCAATGTAAAGTCTAGGAT 57.300 39.130 0.00 0.00 0.00 3.24
1829 1837 5.245531 CAAGCACCAATGTAAAGTCTAGGA 58.754 41.667 0.00 0.00 0.00 2.94
1832 1840 4.393834 TGCAAGCACCAATGTAAAGTCTA 58.606 39.130 0.00 0.00 0.00 2.59
1834 1842 3.641437 TGCAAGCACCAATGTAAAGTC 57.359 42.857 0.00 0.00 0.00 3.01
1835 1843 4.605640 AATGCAAGCACCAATGTAAAGT 57.394 36.364 0.00 0.00 0.00 2.66
1836 1844 5.927954 AAAATGCAAGCACCAATGTAAAG 57.072 34.783 0.00 0.00 0.00 1.85
1837 1845 7.212976 TCTAAAAATGCAAGCACCAATGTAAA 58.787 30.769 0.00 0.00 0.00 2.01
1838 1846 6.753180 TCTAAAAATGCAAGCACCAATGTAA 58.247 32.000 0.00 0.00 0.00 2.41
1839 1847 6.338214 TCTAAAAATGCAAGCACCAATGTA 57.662 33.333 0.00 0.00 0.00 2.29
1840 1848 5.212532 TCTAAAAATGCAAGCACCAATGT 57.787 34.783 0.00 0.00 0.00 2.71
1841 1849 6.730960 ATTCTAAAAATGCAAGCACCAATG 57.269 33.333 0.00 0.00 0.00 2.82
1842 1850 7.748691 AAATTCTAAAAATGCAAGCACCAAT 57.251 28.000 0.00 0.00 0.00 3.16
1843 1851 8.845413 ATAAATTCTAAAAATGCAAGCACCAA 57.155 26.923 0.00 0.00 0.00 3.67
1844 1852 8.845413 AATAAATTCTAAAAATGCAAGCACCA 57.155 26.923 0.00 0.00 0.00 4.17
2145 2154 5.171339 AGATGGACTCTATTGTTGCAGTT 57.829 39.130 0.00 0.00 30.26 3.16
2402 4079 4.521130 ACTGCATTTACAAGAGAGACGA 57.479 40.909 0.00 0.00 0.00 4.20
2484 4161 7.558807 TCTCTTGTCGGTATTAAGATTGACCTA 59.441 37.037 0.00 0.00 30.78 3.08
2553 4230 0.110678 TCCATTACAAACCGGCACCA 59.889 50.000 0.00 0.00 0.00 4.17
2558 4235 1.170442 GGTGGTCCATTACAAACCGG 58.830 55.000 0.00 0.00 35.76 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.