Multiple sequence alignment - TraesCS6A01G386100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G386100 chr6A 100.000 2849 0 0 1 2849 603241824 603244672 0.000000e+00 5262.0
1 TraesCS6A01G386100 chr6D 91.366 1691 69 33 610 2243 456518268 456519938 0.000000e+00 2242.0
2 TraesCS6A01G386100 chr6D 85.885 418 52 7 2429 2842 456524171 456524585 3.370000e-119 438.0
3 TraesCS6A01G386100 chr6B 90.542 1660 102 32 604 2237 694250041 694251671 0.000000e+00 2145.0
4 TraesCS6A01G386100 chr6B 85.904 376 39 11 2476 2841 694251663 694252034 3.440000e-104 388.0
5 TraesCS6A01G386100 chr4A 89.046 566 50 5 23 585 106901002 106901558 0.000000e+00 691.0
6 TraesCS6A01G386100 chr1D 93.247 385 25 1 18 402 13889293 13889676 1.480000e-157 566.0
7 TraesCS6A01G386100 chr1D 94.565 368 17 3 23 390 14004222 14004586 1.480000e-157 566.0
8 TraesCS6A01G386100 chr1D 93.421 380 23 2 23 402 13856025 13856402 1.920000e-156 562.0
9 TraesCS6A01G386100 chr1D 93.750 368 22 1 23 390 13972928 13973294 4.150000e-153 551.0
10 TraesCS6A01G386100 chr1D 90.608 181 14 2 405 585 13856453 13856630 1.320000e-58 237.0
11 TraesCS6A01G386100 chr1D 89.840 187 15 3 399 585 13889723 13889905 1.320000e-58 237.0
12 TraesCS6A01G386100 chr5D 92.651 381 26 2 23 402 107148392 107148013 5.370000e-152 547.0
13 TraesCS6A01G386100 chr5D 96.552 58 1 1 529 585 545982301 545982244 8.400000e-16 95.3
14 TraesCS6A01G386100 chr5B 88.496 452 36 11 147 585 361433381 361433829 1.500000e-147 532.0
15 TraesCS6A01G386100 chr5B 89.730 185 16 2 399 583 631456839 631457020 1.710000e-57 233.0
16 TraesCS6A01G386100 chrUn 89.974 379 34 4 25 402 353682373 353681998 1.190000e-133 486.0
17 TraesCS6A01G386100 chrUn 95.745 47 0 2 540 585 16895782 16895737 1.090000e-09 75.0
18 TraesCS6A01G386100 chr1B 89.974 379 34 4 25 402 73318571 73318196 1.190000e-133 486.0
19 TraesCS6A01G386100 chr1B 89.710 379 35 4 25 402 73317254 73316879 5.520000e-132 481.0
20 TraesCS6A01G386100 chr1B 89.840 187 16 2 399 585 622182914 622183097 1.320000e-58 237.0
21 TraesCS6A01G386100 chr7D 85.308 211 19 9 399 607 45589597 45589397 1.030000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G386100 chr6A 603241824 603244672 2848 False 5262.0 5262 100.0000 1 2849 1 chr6A.!!$F1 2848
1 TraesCS6A01G386100 chr6D 456518268 456519938 1670 False 2242.0 2242 91.3660 610 2243 1 chr6D.!!$F1 1633
2 TraesCS6A01G386100 chr6B 694250041 694252034 1993 False 1266.5 2145 88.2230 604 2841 2 chr6B.!!$F1 2237
3 TraesCS6A01G386100 chr4A 106901002 106901558 556 False 691.0 691 89.0460 23 585 1 chr4A.!!$F1 562
4 TraesCS6A01G386100 chr1D 13889293 13889905 612 False 401.5 566 91.5435 18 585 2 chr1D.!!$F4 567
5 TraesCS6A01G386100 chr1D 13856025 13856630 605 False 399.5 562 92.0145 23 585 2 chr1D.!!$F3 562
6 TraesCS6A01G386100 chr1B 73316879 73318571 1692 True 483.5 486 89.8420 25 402 2 chr1B.!!$R1 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 659 0.03496 TGCGCCTATTGTTGCCCTAA 60.035 50.0 4.18 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2778 0.044092 TATGTGGGAGGCTGAAGGGA 59.956 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.683211 AACCATCCACCAAAAGAGCT 57.317 45.000 0.00 0.00 0.00 4.09
20 21 1.915141 ACCATCCACCAAAAGAGCTG 58.085 50.000 0.00 0.00 0.00 4.24
21 22 1.180029 CCATCCACCAAAAGAGCTGG 58.820 55.000 0.00 0.00 40.05 4.85
74 75 4.400961 GAGCTGGAACCGCAGCCT 62.401 66.667 8.84 0.00 44.90 4.58
140 143 1.973281 CGGCTGGGATGTTGCAACT 60.973 57.895 28.61 15.19 0.00 3.16
157 160 3.573772 CTGTTGTCCGGCGAGCTGA 62.574 63.158 9.30 0.00 0.00 4.26
369 374 0.940991 GGCGAAAAAGCTGCAACCAG 60.941 55.000 1.02 0.00 42.13 4.00
374 379 0.947244 AAAAGCTGCAACCAGTCGAG 59.053 50.000 1.02 0.00 41.26 4.04
427 481 2.721167 AAGCGCGGAGTCATGGCTA 61.721 57.895 8.83 0.00 32.82 3.93
481 535 3.057174 GGAGCTGTCGAGAAGAAGAAGAA 60.057 47.826 0.00 0.00 0.00 2.52
482 536 4.165779 GAGCTGTCGAGAAGAAGAAGAAG 58.834 47.826 0.00 0.00 0.00 2.85
483 537 3.823873 AGCTGTCGAGAAGAAGAAGAAGA 59.176 43.478 0.00 0.00 0.00 2.87
496 550 1.853114 AAGAAGACGAGCGCACGAGA 61.853 55.000 33.02 0.00 37.03 4.04
497 551 1.442184 GAAGACGAGCGCACGAGAA 60.442 57.895 33.02 0.00 37.03 2.87
499 553 1.853114 AAGACGAGCGCACGAGAAGA 61.853 55.000 33.02 0.00 37.03 2.87
526 580 3.495100 GGAAGGAATCATGCGGTGTAGAT 60.495 47.826 0.00 0.00 0.00 1.98
603 657 2.046285 GTGCGCCTATTGTTGCCCT 61.046 57.895 4.18 0.00 0.00 5.19
605 659 0.034960 TGCGCCTATTGTTGCCCTAA 60.035 50.000 4.18 0.00 0.00 2.69
1633 2003 0.632294 GGAGAGGGGTCTGGAGTACT 59.368 60.000 0.00 0.00 0.00 2.73
1758 2128 2.732619 GGATCTGTCCCCGGACCAC 61.733 68.421 0.73 0.00 43.97 4.16
1773 2143 2.731571 CCACGGGGATCATGACGGT 61.732 63.158 0.00 0.00 35.59 4.83
1850 2220 1.065345 GGAGAGCTGGGAAAGGTAACC 60.065 57.143 0.00 0.00 36.52 2.85
1868 2238 5.124776 GGTAACCGGTGATCAATCAATCAAA 59.875 40.000 8.52 0.00 38.75 2.69
1899 2281 2.125326 CATGGCTGGCAGGATGTGG 61.125 63.158 17.64 0.00 39.31 4.17
1970 2353 7.201266 GCTCGCTATGAACAGTTTAATTTGTTG 60.201 37.037 9.15 0.00 37.63 3.33
1971 2354 7.081349 TCGCTATGAACAGTTTAATTTGTTGG 58.919 34.615 9.15 1.17 37.63 3.77
2013 2407 4.937620 TGTAGCACAAATAGCAAGAGGAAG 59.062 41.667 0.00 0.00 0.00 3.46
2032 2426 9.688091 AGAGGAAGAAATTTATTTTAGACCCTC 57.312 33.333 15.67 15.67 0.00 4.30
2033 2427 8.507524 AGGAAGAAATTTATTTTAGACCCTCG 57.492 34.615 0.00 0.00 0.00 4.63
2034 2428 8.326529 AGGAAGAAATTTATTTTAGACCCTCGA 58.673 33.333 0.00 0.00 0.00 4.04
2048 2442 9.947433 TTTAGACCCTCGAATTACTTCAAATTA 57.053 29.630 0.00 0.00 0.00 1.40
2066 2460 7.763356 TCAAATTAACTTTCGACCACAAAGAA 58.237 30.769 0.93 0.00 35.24 2.52
2079 2473 3.702045 CCACAAAGAAAGTAAACCACCCA 59.298 43.478 0.00 0.00 0.00 4.51
2081 2475 4.158764 CACAAAGAAAGTAAACCACCCACA 59.841 41.667 0.00 0.00 0.00 4.17
2084 2478 3.763057 AGAAAGTAAACCACCCACATCC 58.237 45.455 0.00 0.00 0.00 3.51
2085 2479 2.597578 AAGTAAACCACCCACATCCC 57.402 50.000 0.00 0.00 0.00 3.85
2120 2514 5.273944 GGAATCGATTTGCCAACATAGTTC 58.726 41.667 12.81 0.00 0.00 3.01
2123 2643 3.689161 TCGATTTGCCAACATAGTTCAGG 59.311 43.478 0.00 0.00 0.00 3.86
2134 2655 5.762179 ACATAGTTCAGGGAAAGACATGA 57.238 39.130 0.00 0.00 0.00 3.07
2151 2672 3.068307 ACATGATCGTTGTAGGTAGGCTC 59.932 47.826 0.00 0.00 0.00 4.70
2152 2673 2.029623 TGATCGTTGTAGGTAGGCTCC 58.970 52.381 0.00 0.00 0.00 4.70
2157 2678 2.028385 CGTTGTAGGTAGGCTCCAACTT 60.028 50.000 0.00 0.00 34.66 2.66
2158 2679 3.194116 CGTTGTAGGTAGGCTCCAACTTA 59.806 47.826 0.00 0.00 34.66 2.24
2172 2696 6.150140 GGCTCCAACTTATAGAAGCCAATATG 59.850 42.308 6.33 0.00 40.57 1.78
2238 2766 5.047943 CACTAGATTATAGTCCTTCCACCCG 60.048 48.000 0.00 0.00 0.00 5.28
2243 2771 0.604578 TAGTCCTTCCACCCGTTTCG 59.395 55.000 0.00 0.00 0.00 3.46
2245 2773 2.142104 TCCTTCCACCCGTTTCGGT 61.142 57.895 7.40 0.00 46.80 4.69
2246 2774 1.670083 CCTTCCACCCGTTTCGGTC 60.670 63.158 7.40 0.00 46.80 4.79
2247 2775 1.070105 CTTCCACCCGTTTCGGTCA 59.930 57.895 7.40 0.00 46.80 4.02
2248 2776 0.321298 CTTCCACCCGTTTCGGTCAT 60.321 55.000 7.40 0.00 46.80 3.06
2249 2777 0.320946 TTCCACCCGTTTCGGTCATC 60.321 55.000 7.40 0.00 46.80 2.92
2250 2778 1.189524 TCCACCCGTTTCGGTCATCT 61.190 55.000 7.40 0.00 46.80 2.90
2251 2779 0.739813 CCACCCGTTTCGGTCATCTC 60.740 60.000 7.40 0.00 46.80 2.75
2252 2780 0.739813 CACCCGTTTCGGTCATCTCC 60.740 60.000 7.40 0.00 46.80 3.71
2253 2781 1.153429 CCCGTTTCGGTCATCTCCC 60.153 63.158 7.40 0.00 46.80 4.30
2254 2782 1.614241 CCCGTTTCGGTCATCTCCCT 61.614 60.000 7.40 0.00 46.80 4.20
2255 2783 0.249398 CCGTTTCGGTCATCTCCCTT 59.751 55.000 0.00 0.00 42.73 3.95
2256 2784 1.641577 CGTTTCGGTCATCTCCCTTC 58.358 55.000 0.00 0.00 0.00 3.46
2257 2785 1.067142 CGTTTCGGTCATCTCCCTTCA 60.067 52.381 0.00 0.00 0.00 3.02
2258 2786 2.622436 GTTTCGGTCATCTCCCTTCAG 58.378 52.381 0.00 0.00 0.00 3.02
2259 2787 0.537188 TTCGGTCATCTCCCTTCAGC 59.463 55.000 0.00 0.00 0.00 4.26
2260 2788 1.144936 CGGTCATCTCCCTTCAGCC 59.855 63.158 0.00 0.00 0.00 4.85
2261 2789 1.333636 CGGTCATCTCCCTTCAGCCT 61.334 60.000 0.00 0.00 0.00 4.58
2262 2790 0.467804 GGTCATCTCCCTTCAGCCTC 59.532 60.000 0.00 0.00 0.00 4.70
2263 2791 0.467804 GTCATCTCCCTTCAGCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
2264 2792 0.692419 TCATCTCCCTTCAGCCTCCC 60.692 60.000 0.00 0.00 0.00 4.30
2265 2793 0.984961 CATCTCCCTTCAGCCTCCCA 60.985 60.000 0.00 0.00 0.00 4.37
2266 2794 0.985490 ATCTCCCTTCAGCCTCCCAC 60.985 60.000 0.00 0.00 0.00 4.61
2267 2795 1.920325 CTCCCTTCAGCCTCCCACA 60.920 63.158 0.00 0.00 0.00 4.17
2268 2796 1.229951 TCCCTTCAGCCTCCCACAT 60.230 57.895 0.00 0.00 0.00 3.21
2269 2797 0.044092 TCCCTTCAGCCTCCCACATA 59.956 55.000 0.00 0.00 0.00 2.29
2270 2798 0.918983 CCCTTCAGCCTCCCACATAA 59.081 55.000 0.00 0.00 0.00 1.90
2271 2799 1.496429 CCCTTCAGCCTCCCACATAAT 59.504 52.381 0.00 0.00 0.00 1.28
2272 2800 2.711009 CCCTTCAGCCTCCCACATAATA 59.289 50.000 0.00 0.00 0.00 0.98
2273 2801 3.331889 CCCTTCAGCCTCCCACATAATAT 59.668 47.826 0.00 0.00 0.00 1.28
2274 2802 4.330250 CCTTCAGCCTCCCACATAATATG 58.670 47.826 0.00 0.00 0.00 1.78
2275 2803 4.202503 CCTTCAGCCTCCCACATAATATGT 60.203 45.833 0.00 0.00 46.22 2.29
2276 2804 4.623932 TCAGCCTCCCACATAATATGTC 57.376 45.455 2.41 0.00 42.70 3.06
2277 2805 3.327757 TCAGCCTCCCACATAATATGTCC 59.672 47.826 2.41 0.00 42.70 4.02
2278 2806 3.072915 CAGCCTCCCACATAATATGTCCA 59.927 47.826 2.41 0.00 42.70 4.02
2279 2807 3.918912 AGCCTCCCACATAATATGTCCAT 59.081 43.478 2.41 0.00 42.70 3.41
2280 2808 4.354987 AGCCTCCCACATAATATGTCCATT 59.645 41.667 2.41 0.00 42.70 3.16
2281 2809 5.079643 GCCTCCCACATAATATGTCCATTT 58.920 41.667 2.41 0.00 42.70 2.32
2282 2810 5.539955 GCCTCCCACATAATATGTCCATTTT 59.460 40.000 2.41 0.00 42.70 1.82
2283 2811 6.294731 GCCTCCCACATAATATGTCCATTTTC 60.295 42.308 2.41 0.00 42.70 2.29
2284 2812 6.209391 CCTCCCACATAATATGTCCATTTTCC 59.791 42.308 2.41 0.00 42.70 3.13
2285 2813 6.921412 TCCCACATAATATGTCCATTTTCCT 58.079 36.000 2.41 0.00 42.70 3.36
2286 2814 7.004086 TCCCACATAATATGTCCATTTTCCTC 58.996 38.462 2.41 0.00 42.70 3.71
2287 2815 7.006509 CCCACATAATATGTCCATTTTCCTCT 58.993 38.462 2.41 0.00 42.70 3.69
2288 2816 7.175641 CCCACATAATATGTCCATTTTCCTCTC 59.824 40.741 2.41 0.00 42.70 3.20
2289 2817 7.941238 CCACATAATATGTCCATTTTCCTCTCT 59.059 37.037 2.41 0.00 42.70 3.10
2290 2818 8.997323 CACATAATATGTCCATTTTCCTCTCTC 58.003 37.037 2.41 0.00 42.70 3.20
2291 2819 8.160106 ACATAATATGTCCATTTTCCTCTCTCC 58.840 37.037 0.00 0.00 39.92 3.71
2292 2820 6.838401 AATATGTCCATTTTCCTCTCTCCT 57.162 37.500 0.00 0.00 0.00 3.69
2293 2821 6.838401 ATATGTCCATTTTCCTCTCTCCTT 57.162 37.500 0.00 0.00 0.00 3.36
2294 2822 4.292186 TGTCCATTTTCCTCTCTCCTTG 57.708 45.455 0.00 0.00 0.00 3.61
2295 2823 3.652869 TGTCCATTTTCCTCTCTCCTTGT 59.347 43.478 0.00 0.00 0.00 3.16
2296 2824 4.104738 TGTCCATTTTCCTCTCTCCTTGTT 59.895 41.667 0.00 0.00 0.00 2.83
2297 2825 5.073428 GTCCATTTTCCTCTCTCCTTGTTT 58.927 41.667 0.00 0.00 0.00 2.83
2298 2826 6.183361 TGTCCATTTTCCTCTCTCCTTGTTTA 60.183 38.462 0.00 0.00 0.00 2.01
2299 2827 6.372937 GTCCATTTTCCTCTCTCCTTGTTTAG 59.627 42.308 0.00 0.00 0.00 1.85
2300 2828 5.124617 CCATTTTCCTCTCTCCTTGTTTAGC 59.875 44.000 0.00 0.00 0.00 3.09
2301 2829 3.983044 TTCCTCTCTCCTTGTTTAGCC 57.017 47.619 0.00 0.00 0.00 3.93
2302 2830 3.191888 TCCTCTCTCCTTGTTTAGCCT 57.808 47.619 0.00 0.00 0.00 4.58
2303 2831 3.521727 TCCTCTCTCCTTGTTTAGCCTT 58.478 45.455 0.00 0.00 0.00 4.35
2304 2832 4.684724 TCCTCTCTCCTTGTTTAGCCTTA 58.315 43.478 0.00 0.00 0.00 2.69
2305 2833 4.466726 TCCTCTCTCCTTGTTTAGCCTTAC 59.533 45.833 0.00 0.00 0.00 2.34
2306 2834 4.223032 CCTCTCTCCTTGTTTAGCCTTACA 59.777 45.833 0.00 0.00 0.00 2.41
2307 2835 5.104735 CCTCTCTCCTTGTTTAGCCTTACAT 60.105 44.000 0.00 0.00 0.00 2.29
2308 2836 6.098409 CCTCTCTCCTTGTTTAGCCTTACATA 59.902 42.308 0.00 0.00 0.00 2.29
2309 2837 7.202047 CCTCTCTCCTTGTTTAGCCTTACATAT 60.202 40.741 0.00 0.00 0.00 1.78
2310 2838 8.090788 TCTCTCCTTGTTTAGCCTTACATATT 57.909 34.615 0.00 0.00 0.00 1.28
2311 2839 9.209048 TCTCTCCTTGTTTAGCCTTACATATTA 57.791 33.333 0.00 0.00 0.00 0.98
2312 2840 9.482627 CTCTCCTTGTTTAGCCTTACATATTAG 57.517 37.037 0.00 0.00 0.00 1.73
2313 2841 9.209048 TCTCCTTGTTTAGCCTTACATATTAGA 57.791 33.333 0.00 0.00 0.00 2.10
2315 2843 9.778741 TCCTTGTTTAGCCTTACATATTAGATG 57.221 33.333 0.00 0.00 0.00 2.90
2316 2844 9.778741 CCTTGTTTAGCCTTACATATTAGATGA 57.221 33.333 0.00 0.00 0.00 2.92
2335 2863 6.587273 AGATGAGAATTTAGTAGGTTCTGGC 58.413 40.000 4.42 0.00 32.67 4.85
2336 2864 4.755411 TGAGAATTTAGTAGGTTCTGGCG 58.245 43.478 4.42 0.00 32.67 5.69
2337 2865 3.532542 AGAATTTAGTAGGTTCTGGCGC 58.467 45.455 0.00 0.00 31.41 6.53
2338 2866 2.327200 ATTTAGTAGGTTCTGGCGCC 57.673 50.000 22.73 22.73 0.00 6.53
2339 2867 0.108520 TTTAGTAGGTTCTGGCGCCG 60.109 55.000 23.90 16.91 0.00 6.46
2340 2868 0.966875 TTAGTAGGTTCTGGCGCCGA 60.967 55.000 23.90 19.11 0.00 5.54
2341 2869 0.966875 TAGTAGGTTCTGGCGCCGAA 60.967 55.000 23.90 23.70 0.00 4.30
2342 2870 1.375013 GTAGGTTCTGGCGCCGAAA 60.375 57.895 27.19 19.37 0.00 3.46
2343 2871 1.375013 TAGGTTCTGGCGCCGAAAC 60.375 57.895 29.54 29.54 0.00 2.78
2344 2872 1.823169 TAGGTTCTGGCGCCGAAACT 61.823 55.000 36.01 36.01 41.11 2.66
2345 2873 2.258726 GGTTCTGGCGCCGAAACTT 61.259 57.895 30.85 0.00 0.00 2.66
2346 2874 1.206831 GTTCTGGCGCCGAAACTTC 59.793 57.895 27.19 15.64 0.00 3.01
2347 2875 1.227704 TTCTGGCGCCGAAACTTCA 60.228 52.632 23.90 0.00 0.00 3.02
2348 2876 1.503818 TTCTGGCGCCGAAACTTCAC 61.504 55.000 23.90 0.00 0.00 3.18
2349 2877 2.966309 CTGGCGCCGAAACTTCACC 61.966 63.158 23.90 0.00 0.00 4.02
2350 2878 2.975799 GGCGCCGAAACTTCACCA 60.976 61.111 12.58 0.00 0.00 4.17
2351 2879 2.332654 GGCGCCGAAACTTCACCAT 61.333 57.895 12.58 0.00 0.00 3.55
2356 2884 1.610624 GCCGAAACTTCACCATCCTGA 60.611 52.381 0.00 0.00 0.00 3.86
2357 2885 2.778299 CCGAAACTTCACCATCCTGAA 58.222 47.619 0.00 0.00 0.00 3.02
2359 2887 3.058224 CCGAAACTTCACCATCCTGAAAC 60.058 47.826 0.00 0.00 29.66 2.78
2362 2890 5.520376 AAACTTCACCATCCTGAAACAAG 57.480 39.130 0.00 0.00 29.66 3.16
2364 2892 4.792068 ACTTCACCATCCTGAAACAAGAA 58.208 39.130 0.00 0.00 29.66 2.52
2366 2894 3.486383 TCACCATCCTGAAACAAGAACC 58.514 45.455 0.00 0.00 0.00 3.62
2372 2900 1.403679 CCTGAAACAAGAACCGCAACA 59.596 47.619 0.00 0.00 0.00 3.33
2376 2904 3.057174 TGAAACAAGAACCGCAACAACTT 60.057 39.130 0.00 0.00 0.00 2.66
2377 2905 2.844122 ACAAGAACCGCAACAACTTC 57.156 45.000 0.00 0.00 0.00 3.01
2378 2906 1.404035 ACAAGAACCGCAACAACTTCC 59.596 47.619 0.00 0.00 0.00 3.46
2379 2907 1.676006 CAAGAACCGCAACAACTTCCT 59.324 47.619 0.00 0.00 0.00 3.36
2380 2908 2.875933 CAAGAACCGCAACAACTTCCTA 59.124 45.455 0.00 0.00 0.00 2.94
2383 2911 0.605589 ACCGCAACAACTTCCTAGCC 60.606 55.000 0.00 0.00 0.00 3.93
2384 2912 1.305930 CCGCAACAACTTCCTAGCCC 61.306 60.000 0.00 0.00 0.00 5.19
2385 2913 0.321653 CGCAACAACTTCCTAGCCCT 60.322 55.000 0.00 0.00 0.00 5.19
2386 2914 1.454201 GCAACAACTTCCTAGCCCTC 58.546 55.000 0.00 0.00 0.00 4.30
2387 2915 1.003696 GCAACAACTTCCTAGCCCTCT 59.996 52.381 0.00 0.00 0.00 3.69
2388 2916 2.937433 GCAACAACTTCCTAGCCCTCTC 60.937 54.545 0.00 0.00 0.00 3.20
2391 2919 2.225394 ACAACTTCCTAGCCCTCTCAGA 60.225 50.000 0.00 0.00 0.00 3.27
2394 2922 0.633921 TTCCTAGCCCTCTCAGAGCT 59.366 55.000 0.00 0.00 40.66 4.09
2395 2923 0.184933 TCCTAGCCCTCTCAGAGCTC 59.815 60.000 5.27 5.27 38.06 4.09
2396 2924 0.106268 CCTAGCCCTCTCAGAGCTCA 60.106 60.000 17.77 0.00 38.06 4.26
2400 2928 1.685077 CCCTCTCAGAGCTCAGGCA 60.685 63.158 17.77 0.00 41.70 4.75
2402 2930 1.256361 CCTCTCAGAGCTCAGGCACA 61.256 60.000 17.77 0.00 41.70 4.57
2403 2931 0.825410 CTCTCAGAGCTCAGGCACAT 59.175 55.000 17.77 0.00 41.70 3.21
2404 2932 0.822811 TCTCAGAGCTCAGGCACATC 59.177 55.000 17.77 0.00 41.70 3.06
2407 2935 2.202987 GAGCTCAGGCACATCCGG 60.203 66.667 9.40 0.00 41.70 5.14
2408 2936 4.479993 AGCTCAGGCACATCCGGC 62.480 66.667 0.00 0.00 41.70 6.13
2415 2943 4.856801 GCACATCCGGCCGTCCAT 62.857 66.667 26.12 10.16 0.00 3.41
2416 2944 2.124736 CACATCCGGCCGTCCATT 60.125 61.111 26.12 0.34 0.00 3.16
2417 2945 2.180204 CACATCCGGCCGTCCATTC 61.180 63.158 26.12 0.00 0.00 2.67
2418 2946 2.591715 CATCCGGCCGTCCATTCC 60.592 66.667 26.12 0.00 0.00 3.01
2419 2947 4.235762 ATCCGGCCGTCCATTCCG 62.236 66.667 26.12 5.84 42.58 4.30
2425 2953 3.217231 CCGTCCATTCCGGTAGCT 58.783 61.111 0.00 0.00 40.59 3.32
2426 2954 1.520666 CCGTCCATTCCGGTAGCTT 59.479 57.895 0.00 0.00 40.59 3.74
2427 2955 0.810031 CCGTCCATTCCGGTAGCTTG 60.810 60.000 0.00 0.00 40.59 4.01
2428 2956 0.108329 CGTCCATTCCGGTAGCTTGT 60.108 55.000 0.00 0.00 35.57 3.16
2429 2957 1.369625 GTCCATTCCGGTAGCTTGTG 58.630 55.000 0.00 0.00 35.57 3.33
2430 2958 0.392461 TCCATTCCGGTAGCTTGTGC 60.392 55.000 0.00 0.00 36.18 4.57
2431 2959 1.376609 CCATTCCGGTAGCTTGTGCC 61.377 60.000 0.00 0.00 40.80 5.01
2432 2960 1.077716 ATTCCGGTAGCTTGTGCCC 60.078 57.895 0.00 0.00 40.80 5.36
2433 2961 1.847798 ATTCCGGTAGCTTGTGCCCA 61.848 55.000 0.00 0.00 40.80 5.36
2434 2962 1.847798 TTCCGGTAGCTTGTGCCCAT 61.848 55.000 0.00 0.00 40.80 4.00
2435 2963 1.378514 CCGGTAGCTTGTGCCCATT 60.379 57.895 0.00 0.00 40.80 3.16
2436 2964 0.107410 CCGGTAGCTTGTGCCCATTA 60.107 55.000 0.00 0.00 40.80 1.90
2437 2965 1.476833 CCGGTAGCTTGTGCCCATTAT 60.477 52.381 0.00 0.00 40.80 1.28
2438 2966 1.603802 CGGTAGCTTGTGCCCATTATG 59.396 52.381 0.00 0.00 40.80 1.90
2439 2967 1.956477 GGTAGCTTGTGCCCATTATGG 59.044 52.381 3.85 3.85 40.80 2.74
2440 2968 2.654863 GTAGCTTGTGCCCATTATGGT 58.345 47.619 10.65 0.00 40.80 3.55
2441 2969 1.477553 AGCTTGTGCCCATTATGGTG 58.522 50.000 10.65 3.11 40.80 4.17
2442 2970 0.461135 GCTTGTGCCCATTATGGTGG 59.539 55.000 10.65 0.00 35.17 4.61
2443 2971 1.851304 CTTGTGCCCATTATGGTGGT 58.149 50.000 10.65 0.00 37.57 4.16
2444 2972 1.477700 CTTGTGCCCATTATGGTGGTG 59.522 52.381 10.65 0.00 37.57 4.17
2445 2973 0.701147 TGTGCCCATTATGGTGGTGA 59.299 50.000 10.65 0.00 37.57 4.02
2446 2974 1.340893 TGTGCCCATTATGGTGGTGAG 60.341 52.381 10.65 0.00 37.57 3.51
2447 2975 0.998928 TGCCCATTATGGTGGTGAGT 59.001 50.000 10.65 0.00 37.57 3.41
2448 2976 1.357420 TGCCCATTATGGTGGTGAGTT 59.643 47.619 10.65 0.00 37.57 3.01
2449 2977 2.024414 GCCCATTATGGTGGTGAGTTC 58.976 52.381 10.65 0.00 37.57 3.01
2450 2978 2.357154 GCCCATTATGGTGGTGAGTTCT 60.357 50.000 10.65 0.00 37.57 3.01
2451 2979 3.545703 CCCATTATGGTGGTGAGTTCTC 58.454 50.000 10.65 0.00 37.57 2.87
2452 2980 3.200825 CCCATTATGGTGGTGAGTTCTCT 59.799 47.826 10.65 0.00 37.57 3.10
2453 2981 4.408921 CCCATTATGGTGGTGAGTTCTCTA 59.591 45.833 10.65 0.00 37.57 2.43
2454 2982 5.104527 CCCATTATGGTGGTGAGTTCTCTAA 60.105 44.000 10.65 0.00 37.57 2.10
2455 2983 5.817816 CCATTATGGTGGTGAGTTCTCTAAC 59.182 44.000 2.48 0.00 34.46 2.34
2456 2984 6.352222 CCATTATGGTGGTGAGTTCTCTAACT 60.352 42.308 2.48 0.00 40.30 2.24
2457 2985 8.112854 CCATTATGGTGGTGAGTTCTCTAACTC 61.113 44.444 10.60 10.60 45.53 3.01
2467 2995 5.208294 AGTTCTCTAACTCATAGGGGTGA 57.792 43.478 0.00 0.00 42.42 4.02
2468 2996 5.782925 AGTTCTCTAACTCATAGGGGTGAT 58.217 41.667 0.00 0.00 42.42 3.06
2469 2997 6.206042 AGTTCTCTAACTCATAGGGGTGATT 58.794 40.000 0.00 0.00 42.42 2.57
2470 2998 6.674419 AGTTCTCTAACTCATAGGGGTGATTT 59.326 38.462 0.00 0.00 42.42 2.17
2471 2999 6.485830 TCTCTAACTCATAGGGGTGATTTG 57.514 41.667 0.00 0.00 32.48 2.32
2472 3000 5.366768 TCTCTAACTCATAGGGGTGATTTGG 59.633 44.000 0.00 0.00 32.48 3.28
2473 3001 5.036916 TCTAACTCATAGGGGTGATTTGGT 58.963 41.667 0.00 0.00 32.09 3.67
2474 3002 6.206787 TCTAACTCATAGGGGTGATTTGGTA 58.793 40.000 0.00 0.00 32.09 3.25
2475 3003 4.772886 ACTCATAGGGGTGATTTGGTAC 57.227 45.455 0.00 0.00 0.00 3.34
2476 3004 3.458487 ACTCATAGGGGTGATTTGGTACC 59.542 47.826 4.43 4.43 36.21 3.34
2477 3005 3.458118 CTCATAGGGGTGATTTGGTACCA 59.542 47.826 11.60 11.60 38.74 3.25
2478 3006 4.051478 TCATAGGGGTGATTTGGTACCAT 58.949 43.478 17.17 0.30 38.74 3.55
2479 3007 4.104102 TCATAGGGGTGATTTGGTACCATC 59.896 45.833 17.17 12.13 38.74 3.51
2480 3008 1.569072 AGGGGTGATTTGGTACCATCC 59.431 52.381 17.17 12.72 38.74 3.51
2481 3009 1.286553 GGGGTGATTTGGTACCATCCA 59.713 52.381 17.17 11.12 38.74 3.41
2482 3010 2.091333 GGGGTGATTTGGTACCATCCAT 60.091 50.000 17.17 8.45 38.74 3.41
2483 3011 3.629796 GGGGTGATTTGGTACCATCCATT 60.630 47.826 17.17 0.00 38.74 3.16
2500 3028 2.107031 CCATTGCCATCATCTCTACCCA 59.893 50.000 0.00 0.00 0.00 4.51
2505 3033 2.373169 GCCATCATCTCTACCCATTCCA 59.627 50.000 0.00 0.00 0.00 3.53
2521 3049 7.983363 ACCCATTCCATCTTTTCCATTAAAAA 58.017 30.769 0.00 0.00 36.64 1.94
2547 3075 4.350368 TGACTTGTGTTCTTATGCTCCA 57.650 40.909 0.00 0.00 0.00 3.86
2601 3129 5.719173 TGCCAATAACATGGTTCTTTTAGC 58.281 37.500 0.00 0.00 42.75 3.09
2602 3130 5.480073 TGCCAATAACATGGTTCTTTTAGCT 59.520 36.000 0.00 0.00 42.75 3.32
2616 3144 5.768317 TCTTTTAGCTATGTTTGTTGGTGC 58.232 37.500 0.00 0.00 0.00 5.01
2620 3148 1.202348 GCTATGTTTGTTGGTGCCTCC 59.798 52.381 0.00 0.00 0.00 4.30
2621 3149 2.795329 CTATGTTTGTTGGTGCCTCCT 58.205 47.619 0.00 0.00 37.07 3.69
2626 3154 2.430694 GTTTGTTGGTGCCTCCTTTCTT 59.569 45.455 0.00 0.00 37.07 2.52
2632 3160 5.365314 TGTTGGTGCCTCCTTTCTTTTATTT 59.635 36.000 0.00 0.00 37.07 1.40
2662 3190 7.256296 GCAAATTTGTCCATTATAGGGCCTTAT 60.256 37.037 13.45 12.62 30.21 1.73
2670 3198 8.494433 GTCCATTATAGGGCCTTATTCATGATA 58.506 37.037 13.45 0.00 0.00 2.15
2673 3201 9.553064 CATTATAGGGCCTTATTCATGATAGAC 57.447 37.037 13.45 0.00 0.00 2.59
2676 3204 4.593206 AGGGCCTTATTCATGATAGACGAA 59.407 41.667 0.00 0.00 0.00 3.85
2685 3213 5.250235 TCATGATAGACGAACTCCTTCAC 57.750 43.478 0.00 0.00 0.00 3.18
2694 3222 5.756833 AGACGAACTCCTTCACGTTTTAAAT 59.243 36.000 0.00 0.00 39.04 1.40
2701 3229 8.561738 ACTCCTTCACGTTTTAAATATGATGT 57.438 30.769 0.00 0.00 0.00 3.06
2703 3231 7.757526 TCCTTCACGTTTTAAATATGATGTGG 58.242 34.615 9.14 7.11 31.61 4.17
2704 3232 7.608376 TCCTTCACGTTTTAAATATGATGTGGA 59.392 33.333 9.14 8.61 31.61 4.02
2719 3247 3.348647 TGTGGATGTGATACAACCCTG 57.651 47.619 5.90 0.00 39.98 4.45
2724 3252 1.136961 TGTGATACAACCCTGCCCCA 61.137 55.000 0.00 0.00 0.00 4.96
2726 3254 1.076995 GATACAACCCTGCCCCACC 60.077 63.158 0.00 0.00 0.00 4.61
2727 3255 1.854979 ATACAACCCTGCCCCACCA 60.855 57.895 0.00 0.00 0.00 4.17
2733 3261 0.923729 ACCCTGCCCCACCATATCAA 60.924 55.000 0.00 0.00 0.00 2.57
2734 3262 0.484212 CCCTGCCCCACCATATCAAT 59.516 55.000 0.00 0.00 0.00 2.57
2735 3263 1.624336 CCTGCCCCACCATATCAATG 58.376 55.000 0.00 0.00 0.00 2.82
2736 3264 0.963962 CTGCCCCACCATATCAATGC 59.036 55.000 0.00 0.00 0.00 3.56
2737 3265 0.261109 TGCCCCACCATATCAATGCA 59.739 50.000 0.00 0.00 0.00 3.96
2738 3266 1.342774 TGCCCCACCATATCAATGCAA 60.343 47.619 0.00 0.00 0.00 4.08
2740 3268 2.669781 CCCCACCATATCAATGCAAGT 58.330 47.619 0.00 0.00 0.00 3.16
2744 3279 3.559069 CACCATATCAATGCAAGTCCCT 58.441 45.455 0.00 0.00 0.00 4.20
2765 3300 1.645710 AGTTCTCCCACGATGAACCT 58.354 50.000 0.00 0.00 40.42 3.50
2779 3314 3.237268 TGAACCTGCCAACACCTATTT 57.763 42.857 0.00 0.00 0.00 1.40
2781 3316 3.572255 TGAACCTGCCAACACCTATTTTC 59.428 43.478 0.00 0.00 0.00 2.29
2783 3318 2.110011 ACCTGCCAACACCTATTTTCCT 59.890 45.455 0.00 0.00 0.00 3.36
2785 3320 4.202631 ACCTGCCAACACCTATTTTCCTTA 60.203 41.667 0.00 0.00 0.00 2.69
2786 3321 4.399303 CCTGCCAACACCTATTTTCCTTAG 59.601 45.833 0.00 0.00 0.00 2.18
2787 3322 5.249780 TGCCAACACCTATTTTCCTTAGA 57.750 39.130 0.00 0.00 0.00 2.10
2788 3323 5.007682 TGCCAACACCTATTTTCCTTAGAC 58.992 41.667 0.00 0.00 0.00 2.59
2791 3326 5.880887 CCAACACCTATTTTCCTTAGACCTC 59.119 44.000 0.00 0.00 0.00 3.85
2817 3353 6.012858 TCCACTTGACATTACCAAGGATAGTT 60.013 38.462 0.00 0.00 43.81 2.24
2825 3361 5.765576 TTACCAAGGATAGTTTGCTACCA 57.234 39.130 0.00 0.00 0.00 3.25
2829 3365 5.418840 ACCAAGGATAGTTTGCTACCAAATG 59.581 40.000 0.00 0.00 42.44 2.32
2833 3369 5.068198 AGGATAGTTTGCTACCAAATGCATG 59.932 40.000 0.00 0.00 42.44 4.06
2835 3371 3.164268 AGTTTGCTACCAAATGCATGGA 58.836 40.909 13.35 0.00 43.54 3.41
2836 3372 3.056607 AGTTTGCTACCAAATGCATGGAC 60.057 43.478 13.35 0.00 43.54 4.02
2839 3375 1.686115 GCTACCAAATGCATGGACCCT 60.686 52.381 13.35 0.00 43.54 4.34
2842 3378 1.901833 ACCAAATGCATGGACCCTTTC 59.098 47.619 13.35 0.00 43.54 2.62
2843 3379 2.181975 CCAAATGCATGGACCCTTTCT 58.818 47.619 0.00 0.00 43.54 2.52
2844 3380 2.568509 CCAAATGCATGGACCCTTTCTT 59.431 45.455 0.00 0.00 43.54 2.52
2845 3381 3.592059 CAAATGCATGGACCCTTTCTTG 58.408 45.455 0.00 0.00 0.00 3.02
2846 3382 1.188863 ATGCATGGACCCTTTCTTGC 58.811 50.000 0.00 0.00 35.26 4.01
2847 3383 0.112995 TGCATGGACCCTTTCTTGCT 59.887 50.000 0.00 0.00 35.54 3.91
2848 3384 1.260544 GCATGGACCCTTTCTTGCTT 58.739 50.000 0.00 0.00 33.23 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.242043 CAGCTCTTTTGGTGGATGGTT 58.758 47.619 0.00 0.00 0.00 3.67
7 8 1.610522 CTGGTTCCAGCTCTTTTGGTG 59.389 52.381 5.89 0.00 37.02 4.17
8 9 1.479389 CCTGGTTCCAGCTCTTTTGGT 60.479 52.381 12.88 0.00 37.02 3.67
9 10 1.251251 CCTGGTTCCAGCTCTTTTGG 58.749 55.000 12.88 0.00 37.04 3.28
10 11 0.600057 GCCTGGTTCCAGCTCTTTTG 59.400 55.000 12.88 0.00 33.07 2.44
11 12 0.185901 TGCCTGGTTCCAGCTCTTTT 59.814 50.000 12.88 0.00 33.07 2.27
12 13 0.185901 TTGCCTGGTTCCAGCTCTTT 59.814 50.000 12.88 0.00 33.07 2.52
13 14 0.251077 CTTGCCTGGTTCCAGCTCTT 60.251 55.000 12.88 0.00 33.07 2.85
14 15 1.377994 CTTGCCTGGTTCCAGCTCT 59.622 57.895 12.88 0.00 33.07 4.09
15 16 1.676967 CCTTGCCTGGTTCCAGCTC 60.677 63.158 12.88 7.63 33.07 4.09
16 17 2.437897 CCTTGCCTGGTTCCAGCT 59.562 61.111 12.88 0.00 33.07 4.24
17 18 2.677875 CCCTTGCCTGGTTCCAGC 60.678 66.667 12.88 9.21 33.07 4.85
18 19 2.036256 CCCCTTGCCTGGTTCCAG 59.964 66.667 11.52 11.52 0.00 3.86
19 20 2.451493 TCCCCTTGCCTGGTTCCA 60.451 61.111 0.00 0.00 0.00 3.53
20 21 2.356667 CTCCCCTTGCCTGGTTCC 59.643 66.667 0.00 0.00 0.00 3.62
21 22 2.361737 GCTCCCCTTGCCTGGTTC 60.362 66.667 0.00 0.00 0.00 3.62
140 143 2.652382 TTTCAGCTCGCCGGACAACA 62.652 55.000 5.05 0.00 0.00 3.33
157 160 4.555709 TCCACTGCACCGCGGTTT 62.556 61.111 32.11 10.68 46.97 3.27
243 248 2.836154 GGACTGGTTCCAGCACCA 59.164 61.111 17.55 0.00 45.10 4.17
427 481 1.846712 GCTTCCTCCCCTTGCTGACT 61.847 60.000 0.00 0.00 0.00 3.41
434 488 0.912006 GTCTCCTGCTTCCTCCCCTT 60.912 60.000 0.00 0.00 0.00 3.95
481 535 2.177038 CTTCTCGTGCGCTCGTCT 59.823 61.111 28.33 0.00 0.00 4.18
482 536 2.147133 GTCTTCTCGTGCGCTCGTC 61.147 63.158 28.33 11.42 0.00 4.20
483 537 2.126812 GTCTTCTCGTGCGCTCGT 60.127 61.111 28.33 0.00 0.00 4.18
496 550 2.420687 GCATGATTCCTTCCCTCGTCTT 60.421 50.000 0.00 0.00 0.00 3.01
497 551 1.139853 GCATGATTCCTTCCCTCGTCT 59.860 52.381 0.00 0.00 0.00 4.18
499 553 0.179073 CGCATGATTCCTTCCCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
587 641 1.099689 TTTAGGGCAACAATAGGCGC 58.900 50.000 0.00 0.00 42.61 6.53
588 642 3.859411 TTTTTAGGGCAACAATAGGCG 57.141 42.857 0.00 0.00 39.74 5.52
816 1169 4.074466 ACAGCTACGGCGTTTAAATTTC 57.926 40.909 21.24 0.00 44.37 2.17
1586 1956 1.454111 CCCTCCTCCGTGATCTCGT 60.454 63.158 15.34 0.00 0.00 4.18
1616 1986 1.212441 CGTAGTACTCCAGACCCCTCT 59.788 57.143 0.00 0.00 0.00 3.69
1622 1992 1.297451 CGCGCGTAGTACTCCAGAC 60.297 63.158 24.19 0.00 0.00 3.51
1758 2128 2.027605 CGACCGTCATGATCCCCG 59.972 66.667 0.00 0.00 0.00 5.73
1787 2157 3.325753 GCAGCCACCTCCCTGACT 61.326 66.667 0.00 0.00 0.00 3.41
1850 2220 3.357021 CGCTTTGATTGATTGATCACCG 58.643 45.455 0.00 0.00 35.86 4.94
1899 2281 4.734108 GCAATCGACCTCTCTTGTACTACC 60.734 50.000 0.00 0.00 0.00 3.18
1970 2353 7.223971 TGCTACACGATGTGATAAGAATAAACC 59.776 37.037 3.61 0.00 36.96 3.27
1971 2354 8.056571 GTGCTACACGATGTGATAAGAATAAAC 58.943 37.037 3.61 0.00 36.96 2.01
2032 2426 9.047871 GGTCGAAAGTTAATTTGAAGTAATTCG 57.952 33.333 10.78 10.78 34.74 3.34
2033 2427 9.887406 TGGTCGAAAGTTAATTTGAAGTAATTC 57.113 29.630 0.00 0.00 0.00 2.17
2034 2428 9.673454 GTGGTCGAAAGTTAATTTGAAGTAATT 57.327 29.630 0.00 0.00 0.00 1.40
2036 2430 8.211116 TGTGGTCGAAAGTTAATTTGAAGTAA 57.789 30.769 0.00 0.00 0.00 2.24
2041 2435 7.323049 TCTTTGTGGTCGAAAGTTAATTTGA 57.677 32.000 0.00 0.00 33.04 2.69
2056 2450 3.702548 GGGTGGTTTACTTTCTTTGTGGT 59.297 43.478 0.00 0.00 0.00 4.16
2066 2460 2.070573 AGGGATGTGGGTGGTTTACTT 58.929 47.619 0.00 0.00 0.00 2.24
2071 2465 0.698818 GAGAAGGGATGTGGGTGGTT 59.301 55.000 0.00 0.00 0.00 3.67
2099 2493 5.163622 CCTGAACTATGTTGGCAAATCGATT 60.164 40.000 4.39 4.39 0.00 3.34
2101 2495 3.689161 CCTGAACTATGTTGGCAAATCGA 59.311 43.478 0.00 0.00 0.00 3.59
2104 2498 4.046286 TCCCTGAACTATGTTGGCAAAT 57.954 40.909 0.00 0.77 0.00 2.32
2105 2499 3.517296 TCCCTGAACTATGTTGGCAAA 57.483 42.857 0.00 0.00 0.00 3.68
2106 2500 3.517296 TTCCCTGAACTATGTTGGCAA 57.483 42.857 0.00 0.00 0.00 4.52
2107 2501 3.073798 TCTTTCCCTGAACTATGTTGGCA 59.926 43.478 0.00 0.00 0.00 4.92
2120 2514 3.338249 ACAACGATCATGTCTTTCCCTG 58.662 45.455 0.00 0.00 0.00 4.45
2123 2643 4.504858 ACCTACAACGATCATGTCTTTCC 58.495 43.478 4.53 0.00 32.27 3.13
2134 2655 2.154567 TGGAGCCTACCTACAACGAT 57.845 50.000 0.00 0.00 29.10 3.73
2210 2738 7.039853 GGTGGAAGGACTATAATCTAGTGTACC 60.040 44.444 0.00 0.00 0.00 3.34
2238 2766 2.622436 CTGAAGGGAGATGACCGAAAC 58.378 52.381 0.00 0.00 0.00 2.78
2243 2771 0.467804 GAGGCTGAAGGGAGATGACC 59.532 60.000 0.00 0.00 0.00 4.02
2244 2772 0.467804 GGAGGCTGAAGGGAGATGAC 59.532 60.000 0.00 0.00 0.00 3.06
2245 2773 0.692419 GGGAGGCTGAAGGGAGATGA 60.692 60.000 0.00 0.00 0.00 2.92
2246 2774 0.984961 TGGGAGGCTGAAGGGAGATG 60.985 60.000 0.00 0.00 0.00 2.90
2247 2775 0.985490 GTGGGAGGCTGAAGGGAGAT 60.985 60.000 0.00 0.00 0.00 2.75
2248 2776 1.613630 GTGGGAGGCTGAAGGGAGA 60.614 63.158 0.00 0.00 0.00 3.71
2249 2777 1.277580 ATGTGGGAGGCTGAAGGGAG 61.278 60.000 0.00 0.00 0.00 4.30
2250 2778 0.044092 TATGTGGGAGGCTGAAGGGA 59.956 55.000 0.00 0.00 0.00 4.20
2251 2779 0.918983 TTATGTGGGAGGCTGAAGGG 59.081 55.000 0.00 0.00 0.00 3.95
2252 2780 4.202503 ACATATTATGTGGGAGGCTGAAGG 60.203 45.833 8.51 0.00 43.01 3.46
2253 2781 4.978099 ACATATTATGTGGGAGGCTGAAG 58.022 43.478 8.51 0.00 43.01 3.02
2254 2782 4.202461 GGACATATTATGTGGGAGGCTGAA 60.202 45.833 13.93 0.00 45.03 3.02
2255 2783 3.327757 GGACATATTATGTGGGAGGCTGA 59.672 47.826 13.93 0.00 45.03 4.26
2256 2784 3.072915 TGGACATATTATGTGGGAGGCTG 59.927 47.826 13.93 0.00 45.03 4.85
2257 2785 3.326521 TGGACATATTATGTGGGAGGCT 58.673 45.455 13.93 0.00 45.03 4.58
2258 2786 3.788227 TGGACATATTATGTGGGAGGC 57.212 47.619 13.93 0.00 45.03 4.70
2259 2787 6.209391 GGAAAATGGACATATTATGTGGGAGG 59.791 42.308 13.93 0.00 45.03 4.30
2260 2788 7.006509 AGGAAAATGGACATATTATGTGGGAG 58.993 38.462 13.93 0.00 45.03 4.30
2261 2789 6.921412 AGGAAAATGGACATATTATGTGGGA 58.079 36.000 13.93 0.00 45.03 4.37
2262 2790 7.006509 AGAGGAAAATGGACATATTATGTGGG 58.993 38.462 13.93 0.00 45.03 4.61
2263 2791 7.941238 AGAGAGGAAAATGGACATATTATGTGG 59.059 37.037 13.93 0.00 45.03 4.17
2264 2792 8.915057 AGAGAGGAAAATGGACATATTATGTG 57.085 34.615 13.93 0.00 45.03 3.21
2266 2794 8.381636 AGGAGAGAGGAAAATGGACATATTATG 58.618 37.037 2.03 2.03 0.00 1.90
2267 2795 8.517323 AGGAGAGAGGAAAATGGACATATTAT 57.483 34.615 0.00 0.00 0.00 1.28
2268 2796 7.937700 AGGAGAGAGGAAAATGGACATATTA 57.062 36.000 0.00 0.00 0.00 0.98
2269 2797 6.838401 AGGAGAGAGGAAAATGGACATATT 57.162 37.500 0.00 0.00 0.00 1.28
2270 2798 6.159398 ACAAGGAGAGAGGAAAATGGACATAT 59.841 38.462 0.00 0.00 0.00 1.78
2271 2799 5.488919 ACAAGGAGAGAGGAAAATGGACATA 59.511 40.000 0.00 0.00 0.00 2.29
2272 2800 4.290722 ACAAGGAGAGAGGAAAATGGACAT 59.709 41.667 0.00 0.00 0.00 3.06
2273 2801 3.652869 ACAAGGAGAGAGGAAAATGGACA 59.347 43.478 0.00 0.00 0.00 4.02
2274 2802 4.293662 ACAAGGAGAGAGGAAAATGGAC 57.706 45.455 0.00 0.00 0.00 4.02
2275 2803 5.324832 AAACAAGGAGAGAGGAAAATGGA 57.675 39.130 0.00 0.00 0.00 3.41
2276 2804 5.124617 GCTAAACAAGGAGAGAGGAAAATGG 59.875 44.000 0.00 0.00 0.00 3.16
2277 2805 5.124617 GGCTAAACAAGGAGAGAGGAAAATG 59.875 44.000 0.00 0.00 0.00 2.32
2278 2806 5.014649 AGGCTAAACAAGGAGAGAGGAAAAT 59.985 40.000 0.00 0.00 0.00 1.82
2279 2807 4.351111 AGGCTAAACAAGGAGAGAGGAAAA 59.649 41.667 0.00 0.00 0.00 2.29
2280 2808 3.910627 AGGCTAAACAAGGAGAGAGGAAA 59.089 43.478 0.00 0.00 0.00 3.13
2281 2809 3.521727 AGGCTAAACAAGGAGAGAGGAA 58.478 45.455 0.00 0.00 0.00 3.36
2282 2810 3.191888 AGGCTAAACAAGGAGAGAGGA 57.808 47.619 0.00 0.00 0.00 3.71
2283 2811 3.990959 AAGGCTAAACAAGGAGAGAGG 57.009 47.619 0.00 0.00 0.00 3.69
2284 2812 5.407407 TGTAAGGCTAAACAAGGAGAGAG 57.593 43.478 0.45 0.00 0.00 3.20
2285 2813 7.676683 ATATGTAAGGCTAAACAAGGAGAGA 57.323 36.000 6.69 0.00 0.00 3.10
2286 2814 9.482627 CTAATATGTAAGGCTAAACAAGGAGAG 57.517 37.037 6.69 0.00 0.00 3.20
2287 2815 9.209048 TCTAATATGTAAGGCTAAACAAGGAGA 57.791 33.333 6.69 5.37 0.00 3.71
2289 2817 9.778741 CATCTAATATGTAAGGCTAAACAAGGA 57.221 33.333 6.69 2.88 0.00 3.36
2290 2818 9.778741 TCATCTAATATGTAAGGCTAAACAAGG 57.221 33.333 6.69 0.00 0.00 3.61
2309 2837 8.204836 GCCAGAACCTACTAAATTCTCATCTAA 58.795 37.037 0.00 0.00 30.17 2.10
2310 2838 7.470147 CGCCAGAACCTACTAAATTCTCATCTA 60.470 40.741 0.00 0.00 30.17 1.98
2311 2839 6.587273 GCCAGAACCTACTAAATTCTCATCT 58.413 40.000 0.00 0.00 30.17 2.90
2312 2840 5.463724 CGCCAGAACCTACTAAATTCTCATC 59.536 44.000 0.00 0.00 30.17 2.92
2313 2841 5.360591 CGCCAGAACCTACTAAATTCTCAT 58.639 41.667 0.00 0.00 30.17 2.90
2314 2842 4.755411 CGCCAGAACCTACTAAATTCTCA 58.245 43.478 0.00 0.00 30.17 3.27
2315 2843 3.556365 GCGCCAGAACCTACTAAATTCTC 59.444 47.826 0.00 0.00 30.17 2.87
2316 2844 3.532542 GCGCCAGAACCTACTAAATTCT 58.467 45.455 0.00 0.00 32.87 2.40
2317 2845 2.612672 GGCGCCAGAACCTACTAAATTC 59.387 50.000 24.80 0.00 0.00 2.17
2318 2846 2.640184 GGCGCCAGAACCTACTAAATT 58.360 47.619 24.80 0.00 0.00 1.82
2319 2847 1.472728 CGGCGCCAGAACCTACTAAAT 60.473 52.381 28.98 0.00 0.00 1.40
2320 2848 0.108520 CGGCGCCAGAACCTACTAAA 60.109 55.000 28.98 0.00 0.00 1.85
2321 2849 0.966875 TCGGCGCCAGAACCTACTAA 60.967 55.000 28.98 0.00 0.00 2.24
2322 2850 0.966875 TTCGGCGCCAGAACCTACTA 60.967 55.000 28.98 4.93 0.00 1.82
2323 2851 1.823169 TTTCGGCGCCAGAACCTACT 61.823 55.000 28.98 0.00 0.00 2.57
2324 2852 1.375013 TTTCGGCGCCAGAACCTAC 60.375 57.895 28.98 0.00 0.00 3.18
2325 2853 1.375013 GTTTCGGCGCCAGAACCTA 60.375 57.895 28.98 12.74 0.00 3.08
2326 2854 2.668550 GTTTCGGCGCCAGAACCT 60.669 61.111 28.98 0.00 0.00 3.50
2327 2855 2.183858 GAAGTTTCGGCGCCAGAACC 62.184 60.000 28.38 22.61 0.00 3.62
2328 2856 1.206831 GAAGTTTCGGCGCCAGAAC 59.793 57.895 28.98 27.27 0.00 3.01
2329 2857 1.227704 TGAAGTTTCGGCGCCAGAA 60.228 52.632 28.98 25.76 0.00 3.02
2330 2858 1.959226 GTGAAGTTTCGGCGCCAGA 60.959 57.895 28.98 21.43 0.00 3.86
2331 2859 2.556287 GTGAAGTTTCGGCGCCAG 59.444 61.111 28.98 19.33 0.00 4.85
2332 2860 2.975799 GGTGAAGTTTCGGCGCCA 60.976 61.111 28.98 11.20 0.00 5.69
2333 2861 2.253414 GATGGTGAAGTTTCGGCGCC 62.253 60.000 19.07 19.07 0.00 6.53
2334 2862 1.134694 GATGGTGAAGTTTCGGCGC 59.865 57.895 0.00 0.00 0.00 6.53
2335 2863 0.673644 AGGATGGTGAAGTTTCGGCG 60.674 55.000 0.00 0.00 0.00 6.46
2336 2864 0.804989 CAGGATGGTGAAGTTTCGGC 59.195 55.000 0.00 0.00 0.00 5.54
2337 2865 2.472695 TCAGGATGGTGAAGTTTCGG 57.527 50.000 0.00 0.00 36.16 4.30
2338 2866 3.563808 TGTTTCAGGATGGTGAAGTTTCG 59.436 43.478 0.00 0.00 37.72 3.46
2339 2867 5.299279 TCTTGTTTCAGGATGGTGAAGTTTC 59.701 40.000 0.00 0.00 37.72 2.78
2340 2868 5.200483 TCTTGTTTCAGGATGGTGAAGTTT 58.800 37.500 0.00 0.00 37.72 2.66
2341 2869 4.792068 TCTTGTTTCAGGATGGTGAAGTT 58.208 39.130 0.00 0.00 37.72 2.66
2342 2870 4.437682 TCTTGTTTCAGGATGGTGAAGT 57.562 40.909 0.00 0.00 37.72 3.01
2343 2871 4.022849 GGTTCTTGTTTCAGGATGGTGAAG 60.023 45.833 0.00 0.00 37.72 3.02
2344 2872 3.888930 GGTTCTTGTTTCAGGATGGTGAA 59.111 43.478 0.00 0.00 36.16 3.18
2345 2873 3.486383 GGTTCTTGTTTCAGGATGGTGA 58.514 45.455 0.00 0.00 36.16 4.02
2346 2874 2.226437 CGGTTCTTGTTTCAGGATGGTG 59.774 50.000 0.00 0.00 36.16 4.17
2347 2875 2.504367 CGGTTCTTGTTTCAGGATGGT 58.496 47.619 0.00 0.00 36.16 3.55
2348 2876 1.200020 GCGGTTCTTGTTTCAGGATGG 59.800 52.381 0.00 0.00 36.16 3.51
2349 2877 1.879380 TGCGGTTCTTGTTTCAGGATG 59.121 47.619 0.00 0.00 37.54 3.51
2350 2878 2.270352 TGCGGTTCTTGTTTCAGGAT 57.730 45.000 0.00 0.00 0.00 3.24
2351 2879 1.673920 GTTGCGGTTCTTGTTTCAGGA 59.326 47.619 0.00 0.00 0.00 3.86
2356 2884 3.507786 GAAGTTGTTGCGGTTCTTGTTT 58.492 40.909 0.00 0.00 0.00 2.83
2357 2885 2.159296 GGAAGTTGTTGCGGTTCTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
2359 2887 1.676006 AGGAAGTTGTTGCGGTTCTTG 59.324 47.619 0.00 0.00 0.00 3.02
2362 2890 1.197036 GCTAGGAAGTTGTTGCGGTTC 59.803 52.381 0.00 0.00 0.00 3.62
2364 2892 0.605589 GGCTAGGAAGTTGTTGCGGT 60.606 55.000 0.00 0.00 0.00 5.68
2366 2894 0.321653 AGGGCTAGGAAGTTGTTGCG 60.322 55.000 0.00 0.00 0.00 4.85
2372 2900 2.745968 CTCTGAGAGGGCTAGGAAGTT 58.254 52.381 0.36 0.00 0.00 2.66
2376 2904 0.184933 GAGCTCTGAGAGGGCTAGGA 59.815 60.000 12.01 0.00 36.37 2.94
2377 2905 0.106268 TGAGCTCTGAGAGGGCTAGG 60.106 60.000 16.19 0.00 36.37 3.02
2378 2906 1.321474 CTGAGCTCTGAGAGGGCTAG 58.679 60.000 16.19 0.00 36.37 3.42
2379 2907 0.106268 CCTGAGCTCTGAGAGGGCTA 60.106 60.000 21.10 0.00 36.37 3.93
2380 2908 1.381599 CCTGAGCTCTGAGAGGGCT 60.382 63.158 21.10 3.49 39.16 5.19
2383 2911 1.256361 TGTGCCTGAGCTCTGAGAGG 61.256 60.000 21.10 16.59 40.80 3.69
2384 2912 0.825410 ATGTGCCTGAGCTCTGAGAG 59.175 55.000 21.10 4.80 40.80 3.20
2385 2913 0.822811 GATGTGCCTGAGCTCTGAGA 59.177 55.000 21.10 4.96 40.80 3.27
2386 2914 0.179078 GGATGTGCCTGAGCTCTGAG 60.179 60.000 21.10 8.10 40.80 3.35
2387 2915 1.903294 GGATGTGCCTGAGCTCTGA 59.097 57.895 21.10 2.29 40.80 3.27
2388 2916 1.521010 CGGATGTGCCTGAGCTCTG 60.521 63.158 16.19 14.67 40.80 3.35
2391 2919 4.479993 GCCGGATGTGCCTGAGCT 62.480 66.667 5.05 0.00 40.80 4.09
2400 2928 2.189521 GAATGGACGGCCGGATGT 59.810 61.111 31.76 8.20 36.79 3.06
2402 2930 4.235762 CGGAATGGACGGCCGGAT 62.236 66.667 31.76 15.48 41.29 4.18
2409 2937 0.108329 ACAAGCTACCGGAATGGACG 60.108 55.000 9.46 0.00 42.00 4.79
2410 2938 1.369625 CACAAGCTACCGGAATGGAC 58.630 55.000 9.46 0.00 42.00 4.02
2411 2939 0.392461 GCACAAGCTACCGGAATGGA 60.392 55.000 9.46 0.00 38.47 3.41
2412 2940 1.376609 GGCACAAGCTACCGGAATGG 61.377 60.000 9.46 0.00 42.17 3.16
2413 2941 1.376609 GGGCACAAGCTACCGGAATG 61.377 60.000 9.46 1.48 41.70 2.67
2414 2942 1.077716 GGGCACAAGCTACCGGAAT 60.078 57.895 9.46 0.00 41.70 3.01
2415 2943 1.847798 ATGGGCACAAGCTACCGGAA 61.848 55.000 9.46 0.00 41.70 4.30
2416 2944 1.847798 AATGGGCACAAGCTACCGGA 61.848 55.000 9.46 0.00 41.70 5.14
2417 2945 0.107410 TAATGGGCACAAGCTACCGG 60.107 55.000 0.00 0.00 41.70 5.28
2418 2946 1.603802 CATAATGGGCACAAGCTACCG 59.396 52.381 0.00 0.00 41.70 4.02
2419 2947 1.956477 CCATAATGGGCACAAGCTACC 59.044 52.381 0.00 0.00 41.70 3.18
2420 2948 2.358898 CACCATAATGGGCACAAGCTAC 59.641 50.000 0.00 0.00 43.37 3.58
2421 2949 2.653726 CACCATAATGGGCACAAGCTA 58.346 47.619 0.00 0.00 43.37 3.32
2422 2950 1.477553 CACCATAATGGGCACAAGCT 58.522 50.000 0.00 0.00 43.37 3.74
2423 2951 0.461135 CCACCATAATGGGCACAAGC 59.539 55.000 0.00 0.00 43.37 4.01
2424 2952 1.477700 CACCACCATAATGGGCACAAG 59.522 52.381 0.00 0.00 44.81 3.16
2425 2953 1.076187 TCACCACCATAATGGGCACAA 59.924 47.619 0.00 0.00 44.81 3.33
2426 2954 0.701147 TCACCACCATAATGGGCACA 59.299 50.000 0.00 0.00 44.81 4.57
2427 2955 1.340991 ACTCACCACCATAATGGGCAC 60.341 52.381 0.00 0.00 44.81 5.01
2428 2956 0.998928 ACTCACCACCATAATGGGCA 59.001 50.000 0.00 0.00 44.81 5.36
2429 2957 2.024414 GAACTCACCACCATAATGGGC 58.976 52.381 0.00 0.00 44.81 5.36
2430 2958 3.200825 AGAGAACTCACCACCATAATGGG 59.799 47.826 4.64 0.00 44.81 4.00
2431 2959 4.494091 AGAGAACTCACCACCATAATGG 57.506 45.455 4.64 0.00 46.10 3.16
2432 2960 6.644347 AGTTAGAGAACTCACCACCATAATG 58.356 40.000 4.64 0.00 42.50 1.90
2433 2961 6.875972 AGTTAGAGAACTCACCACCATAAT 57.124 37.500 4.64 0.00 42.50 1.28
2446 2974 6.487299 AATCACCCCTATGAGTTAGAGAAC 57.513 41.667 0.00 0.00 35.64 3.01
2447 2975 6.126768 CCAAATCACCCCTATGAGTTAGAGAA 60.127 42.308 0.00 0.00 34.82 2.87
2448 2976 5.366768 CCAAATCACCCCTATGAGTTAGAGA 59.633 44.000 0.00 0.00 34.82 3.10
2449 2977 5.131142 ACCAAATCACCCCTATGAGTTAGAG 59.869 44.000 0.00 0.00 34.82 2.43
2450 2978 5.036916 ACCAAATCACCCCTATGAGTTAGA 58.963 41.667 0.00 0.00 34.82 2.10
2451 2979 5.373812 ACCAAATCACCCCTATGAGTTAG 57.626 43.478 0.00 0.00 34.82 2.34
2452 2980 5.131475 GGTACCAAATCACCCCTATGAGTTA 59.869 44.000 7.15 0.00 34.82 2.24
2453 2981 4.079958 GGTACCAAATCACCCCTATGAGTT 60.080 45.833 7.15 0.00 37.37 3.01
2454 2982 3.458487 GGTACCAAATCACCCCTATGAGT 59.542 47.826 7.15 0.00 30.46 3.41
2455 2983 3.458118 TGGTACCAAATCACCCCTATGAG 59.542 47.826 13.60 0.00 33.61 2.90
2456 2984 3.465832 TGGTACCAAATCACCCCTATGA 58.534 45.455 13.60 0.00 33.61 2.15
2457 2985 3.943671 TGGTACCAAATCACCCCTATG 57.056 47.619 13.60 0.00 33.61 2.23
2458 2986 3.397955 GGATGGTACCAAATCACCCCTAT 59.602 47.826 20.76 0.00 33.61 2.57
2459 2987 2.781174 GGATGGTACCAAATCACCCCTA 59.219 50.000 20.76 0.00 33.61 3.53
2460 2988 1.569072 GGATGGTACCAAATCACCCCT 59.431 52.381 20.76 0.00 33.61 4.79
2461 2989 1.286553 TGGATGGTACCAAATCACCCC 59.713 52.381 20.76 11.51 36.96 4.95
2462 2990 2.818751 TGGATGGTACCAAATCACCC 57.181 50.000 20.76 13.17 36.96 4.61
2463 2991 3.181476 GCAATGGATGGTACCAAATCACC 60.181 47.826 20.76 16.60 43.47 4.02
2464 2992 3.181476 GGCAATGGATGGTACCAAATCAC 60.181 47.826 20.76 8.10 43.47 3.06
2465 2993 3.030291 GGCAATGGATGGTACCAAATCA 58.970 45.455 20.76 17.03 43.47 2.57
2466 2994 3.030291 TGGCAATGGATGGTACCAAATC 58.970 45.455 20.76 13.00 43.47 2.17
2467 2995 3.113191 TGGCAATGGATGGTACCAAAT 57.887 42.857 20.76 10.39 43.47 2.32
2468 2996 2.612285 TGGCAATGGATGGTACCAAA 57.388 45.000 20.76 8.28 43.47 3.28
2469 2997 2.024560 TGATGGCAATGGATGGTACCAA 60.025 45.455 20.76 2.24 43.47 3.67
2470 2998 1.568123 TGATGGCAATGGATGGTACCA 59.432 47.619 18.99 18.99 44.41 3.25
2471 2999 2.363306 TGATGGCAATGGATGGTACC 57.637 50.000 4.43 4.43 0.00 3.34
2472 3000 3.755378 GAGATGATGGCAATGGATGGTAC 59.245 47.826 0.00 0.00 0.00 3.34
2473 3001 3.654321 AGAGATGATGGCAATGGATGGTA 59.346 43.478 0.00 0.00 0.00 3.25
2474 3002 2.445905 AGAGATGATGGCAATGGATGGT 59.554 45.455 0.00 0.00 0.00 3.55
2475 3003 3.156288 AGAGATGATGGCAATGGATGG 57.844 47.619 0.00 0.00 0.00 3.51
2476 3004 4.008330 GGTAGAGATGATGGCAATGGATG 58.992 47.826 0.00 0.00 0.00 3.51
2477 3005 3.009916 GGGTAGAGATGATGGCAATGGAT 59.990 47.826 0.00 0.00 0.00 3.41
2478 3006 2.373169 GGGTAGAGATGATGGCAATGGA 59.627 50.000 0.00 0.00 0.00 3.41
2479 3007 2.107031 TGGGTAGAGATGATGGCAATGG 59.893 50.000 0.00 0.00 0.00 3.16
2480 3008 3.497103 TGGGTAGAGATGATGGCAATG 57.503 47.619 0.00 0.00 0.00 2.82
2481 3009 4.508047 GGAATGGGTAGAGATGATGGCAAT 60.508 45.833 0.00 0.00 0.00 3.56
2482 3010 3.181440 GGAATGGGTAGAGATGATGGCAA 60.181 47.826 0.00 0.00 0.00 4.52
2483 3011 2.373169 GGAATGGGTAGAGATGATGGCA 59.627 50.000 0.00 0.00 0.00 4.92
2521 3049 6.094603 GGAGCATAAGAACACAAGTCATGAAT 59.905 38.462 0.00 0.00 0.00 2.57
2532 3060 7.761409 TGAATGTTAATGGAGCATAAGAACAC 58.239 34.615 0.00 0.00 30.03 3.32
2542 3070 6.212888 ACCTCAAATGAATGTTAATGGAGC 57.787 37.500 0.00 0.00 0.00 4.70
2547 3075 9.480053 CAACAAGAACCTCAAATGAATGTTAAT 57.520 29.630 0.00 0.00 0.00 1.40
2601 3129 2.795329 AGGAGGCACCAACAAACATAG 58.205 47.619 3.18 0.00 42.04 2.23
2602 3130 2.969821 AGGAGGCACCAACAAACATA 57.030 45.000 3.18 0.00 42.04 2.29
2632 3160 6.597280 GCCCTATAATGGACAAATTTGCAAAA 59.403 34.615 17.19 0.00 0.00 2.44
2637 3165 6.484364 AAGGCCCTATAATGGACAAATTTG 57.516 37.500 16.67 16.67 31.11 2.32
2650 3178 7.123383 TCGTCTATCATGAATAAGGCCCTATA 58.877 38.462 0.00 0.00 0.00 1.31
2651 3179 5.958380 TCGTCTATCATGAATAAGGCCCTAT 59.042 40.000 0.00 0.00 0.00 2.57
2652 3180 5.330233 TCGTCTATCATGAATAAGGCCCTA 58.670 41.667 0.00 0.00 0.00 3.53
2662 3190 5.651530 GTGAAGGAGTTCGTCTATCATGAA 58.348 41.667 0.00 0.00 35.17 2.57
2670 3198 2.884894 AAACGTGAAGGAGTTCGTCT 57.115 45.000 0.00 0.00 35.17 4.18
2673 3201 7.735500 TCATATTTAAAACGTGAAGGAGTTCG 58.264 34.615 0.00 0.00 35.17 3.95
2676 3204 8.450964 CACATCATATTTAAAACGTGAAGGAGT 58.549 33.333 0.00 0.00 0.00 3.85
2694 3222 5.369404 AGGGTTGTATCACATCCACATCATA 59.631 40.000 8.30 0.00 39.22 2.15
2701 3229 1.064758 GGCAGGGTTGTATCACATCCA 60.065 52.381 8.30 0.00 39.22 3.41
2703 3231 1.680338 GGGCAGGGTTGTATCACATC 58.320 55.000 0.00 0.00 0.00 3.06
2704 3232 0.258774 GGGGCAGGGTTGTATCACAT 59.741 55.000 0.00 0.00 0.00 3.21
2713 3241 0.923729 TGATATGGTGGGGCAGGGTT 60.924 55.000 0.00 0.00 0.00 4.11
2719 3247 1.342174 CTTGCATTGATATGGTGGGGC 59.658 52.381 0.00 0.00 32.15 5.80
2724 3252 3.959495 AGGGACTTGCATTGATATGGT 57.041 42.857 0.00 0.00 27.25 3.55
2726 3254 6.769822 AGAACTTAGGGACTTGCATTGATATG 59.230 38.462 0.00 0.00 41.75 1.78
2727 3255 6.904626 AGAACTTAGGGACTTGCATTGATAT 58.095 36.000 0.00 0.00 41.75 1.63
2733 3261 2.239907 GGGAGAACTTAGGGACTTGCAT 59.760 50.000 0.00 0.00 41.75 3.96
2734 3262 1.628846 GGGAGAACTTAGGGACTTGCA 59.371 52.381 0.00 0.00 41.75 4.08
2735 3263 1.628846 TGGGAGAACTTAGGGACTTGC 59.371 52.381 0.00 0.00 41.75 4.01
2736 3264 2.353803 CGTGGGAGAACTTAGGGACTTG 60.354 54.545 0.00 0.00 41.75 3.16
2737 3265 1.900486 CGTGGGAGAACTTAGGGACTT 59.100 52.381 0.00 0.00 41.75 3.01
2738 3266 1.076677 TCGTGGGAGAACTTAGGGACT 59.923 52.381 0.00 0.00 46.37 3.85
2740 3268 2.108168 CATCGTGGGAGAACTTAGGGA 58.892 52.381 0.00 0.00 0.00 4.20
2744 3279 3.056107 CAGGTTCATCGTGGGAGAACTTA 60.056 47.826 0.00 0.00 40.97 2.24
2765 3300 5.007682 GTCTAAGGAAAATAGGTGTTGGCA 58.992 41.667 0.00 0.00 0.00 4.92
2779 3314 3.833070 GTCAAGTGGAGAGGTCTAAGGAA 59.167 47.826 0.00 0.00 0.00 3.36
2781 3316 3.165875 TGTCAAGTGGAGAGGTCTAAGG 58.834 50.000 0.00 0.00 0.00 2.69
2783 3318 5.187186 GGTAATGTCAAGTGGAGAGGTCTAA 59.813 44.000 0.00 0.00 0.00 2.10
2785 3320 3.515901 GGTAATGTCAAGTGGAGAGGTCT 59.484 47.826 0.00 0.00 0.00 3.85
2786 3321 3.260884 TGGTAATGTCAAGTGGAGAGGTC 59.739 47.826 0.00 0.00 0.00 3.85
2787 3322 3.248024 TGGTAATGTCAAGTGGAGAGGT 58.752 45.455 0.00 0.00 0.00 3.85
2788 3323 3.981071 TGGTAATGTCAAGTGGAGAGG 57.019 47.619 0.00 0.00 0.00 3.69
2791 3326 4.286297 TCCTTGGTAATGTCAAGTGGAG 57.714 45.455 0.00 0.00 39.78 3.86
2817 3353 1.824230 GGTCCATGCATTTGGTAGCAA 59.176 47.619 2.54 2.54 44.88 3.91
2825 3361 2.027837 GCAAGAAAGGGTCCATGCATTT 60.028 45.455 0.00 0.00 38.72 2.32
2829 3365 1.260544 AAGCAAGAAAGGGTCCATGC 58.739 50.000 0.00 0.00 39.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.