Multiple sequence alignment - TraesCS6A01G385800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G385800 chr6A 100.000 3227 0 0 1 3227 603202149 603205375 0 5960
1 TraesCS6A01G385800 chr6D 92.868 3253 170 36 1 3227 456494415 456497631 0 4665
2 TraesCS6A01G385800 chr6B 90.113 3277 218 61 8 3227 694162408 694165635 0 4159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G385800 chr6A 603202149 603205375 3226 False 5960 5960 100.000 1 3227 1 chr6A.!!$F1 3226
1 TraesCS6A01G385800 chr6D 456494415 456497631 3216 False 4665 4665 92.868 1 3227 1 chr6D.!!$F1 3226
2 TraesCS6A01G385800 chr6B 694162408 694165635 3227 False 4159 4159 90.113 8 3227 1 chr6B.!!$F1 3219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 963 0.106167 GGTTGGGCCTTCCTTATCCC 60.106 60.0 4.53 0.0 39.22 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2707 2755 0.320697 ACCCAGCAGTCTTTCCGTAC 59.679 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.580942 CGTAAGGTCGGGACAACGA 59.419 57.895 12.35 0.00 41.13 3.85
131 132 2.176247 TTCTTTAGGCCCGATCTCCT 57.824 50.000 0.00 3.95 36.51 3.69
136 137 0.559205 TAGGCCCGATCTCCTGGTTA 59.441 55.000 0.00 0.00 34.02 2.85
152 153 2.091885 TGGTTATCAAATCCAGGAGCCC 60.092 50.000 0.00 0.00 0.00 5.19
153 154 2.587522 GTTATCAAATCCAGGAGCCCC 58.412 52.381 0.00 0.00 0.00 5.80
175 176 3.535629 CTGGCCTTGTCCGTCTGCA 62.536 63.158 3.32 0.00 0.00 4.41
206 207 1.033746 CGGGCTTCTTGATGTGGCAT 61.034 55.000 0.00 0.00 0.00 4.40
222 223 1.072678 CATCTCCAGATGGCGCCAT 59.927 57.895 41.16 41.16 46.09 4.40
257 261 7.337184 TCGACTTGATCTTTGAGAGTATAGTGT 59.663 37.037 0.00 0.00 0.00 3.55
258 262 7.971168 CGACTTGATCTTTGAGAGTATAGTGTT 59.029 37.037 0.00 0.00 0.00 3.32
259 263 8.994429 ACTTGATCTTTGAGAGTATAGTGTTG 57.006 34.615 0.00 0.00 0.00 3.33
269 273 4.528596 AGAGTATAGTGTTGTGGACTTGCT 59.471 41.667 0.00 0.00 0.00 3.91
272 276 1.959042 AGTGTTGTGGACTTGCTCTG 58.041 50.000 0.00 0.00 0.00 3.35
296 300 4.286032 TGTTTCTAAGGTAGGACATGTGCT 59.714 41.667 24.00 24.00 34.87 4.40
299 303 4.215908 TCTAAGGTAGGACATGTGCTAGG 58.784 47.826 25.48 13.75 34.15 3.02
301 305 0.830648 GGTAGGACATGTGCTAGGCA 59.169 55.000 25.48 5.38 34.15 4.75
424 428 8.998989 CATTTTATTTATAGTGACAGTGCAACG 58.001 33.333 0.00 0.00 45.86 4.10
478 482 2.403252 AAGATTTCGCAGGGGTACAG 57.597 50.000 0.00 0.00 0.00 2.74
898 923 1.795170 AACGGGCTGAATGTGTGTGC 61.795 55.000 0.00 0.00 0.00 4.57
936 963 0.106167 GGTTGGGCCTTCCTTATCCC 60.106 60.000 4.53 0.00 39.22 3.85
946 973 0.635009 TCCTTATCCCTCGTCCCACT 59.365 55.000 0.00 0.00 0.00 4.00
1009 1036 0.468648 TCTCTCCTCGATGTCGCCTA 59.531 55.000 0.00 0.00 39.60 3.93
1368 1404 2.348888 CCACCTCTACGTCGGCCTT 61.349 63.158 0.00 0.00 0.00 4.35
1649 1685 2.049063 GTTCCTCTGCACGCTCGT 60.049 61.111 0.00 0.00 0.00 4.18
1832 1874 2.895680 GCTGGACATGCTCGAGGA 59.104 61.111 15.58 12.84 0.00 3.71
1912 1954 1.405526 GCCTCTTCACCACGCTCATAA 60.406 52.381 0.00 0.00 0.00 1.90
2008 2050 1.043816 CATGCGGGAGATCTACCAGT 58.956 55.000 24.24 5.87 31.13 4.00
2061 2103 1.153706 CATCGCCGACGGGTACTTT 60.154 57.895 17.22 0.00 40.63 2.66
2139 2181 2.507944 CGGGAGGCCCTCATGAAG 59.492 66.667 13.90 0.00 42.67 3.02
2240 2285 5.020795 TGTTGGCTAGGATTACAGAGTGTA 58.979 41.667 0.00 0.00 0.00 2.90
2241 2286 5.127194 TGTTGGCTAGGATTACAGAGTGTAG 59.873 44.000 0.00 0.00 33.92 2.74
2242 2287 3.637229 TGGCTAGGATTACAGAGTGTAGC 59.363 47.826 0.00 0.00 33.92 3.58
2243 2288 3.892588 GGCTAGGATTACAGAGTGTAGCT 59.107 47.826 0.00 0.00 33.92 3.32
2244 2289 4.261825 GGCTAGGATTACAGAGTGTAGCTG 60.262 50.000 0.00 0.00 33.92 4.24
2245 2290 4.580995 GCTAGGATTACAGAGTGTAGCTGA 59.419 45.833 0.00 0.00 33.92 4.26
2247 2292 6.239176 GCTAGGATTACAGAGTGTAGCTGAAT 60.239 42.308 0.00 0.00 33.92 2.57
2249 2294 6.344500 AGGATTACAGAGTGTAGCTGAATTG 58.656 40.000 0.00 0.00 33.92 2.32
2317 2362 4.219288 AGAGGATGAAACAAAATGGCAGAC 59.781 41.667 0.00 0.00 0.00 3.51
2331 2376 2.165641 TGGCAGACTATTACTGTGACCG 59.834 50.000 0.00 0.00 37.64 4.79
2472 2517 5.368230 TGGCATACTGGTCTCCATACATTTA 59.632 40.000 0.00 0.00 30.82 1.40
2479 2524 5.928976 TGGTCTCCATACATTTACATCCAG 58.071 41.667 0.00 0.00 0.00 3.86
2490 2535 6.594744 ACATTTACATCCAGTCATGATGCTA 58.405 36.000 0.00 0.00 42.68 3.49
2491 2536 7.056006 ACATTTACATCCAGTCATGATGCTAA 58.944 34.615 0.00 0.00 42.68 3.09
2492 2537 7.722728 ACATTTACATCCAGTCATGATGCTAAT 59.277 33.333 0.00 0.00 42.68 1.73
2493 2538 9.223099 CATTTACATCCAGTCATGATGCTAATA 57.777 33.333 0.00 0.00 42.68 0.98
2494 2539 9.797642 ATTTACATCCAGTCATGATGCTAATAA 57.202 29.630 0.00 0.00 42.68 1.40
2495 2540 9.797642 TTTACATCCAGTCATGATGCTAATAAT 57.202 29.630 0.00 0.00 42.68 1.28
2498 2543 9.970553 ACATCCAGTCATGATGCTAATAATAAT 57.029 29.630 0.00 0.00 42.68 1.28
2510 2555 8.798859 ATGCTAATAATAATAAGGCAGTCAGG 57.201 34.615 0.00 0.00 0.00 3.86
2520 2565 3.652581 GCAGTCAGGCCCTTTTACT 57.347 52.632 0.00 0.00 0.00 2.24
2521 2566 1.911057 GCAGTCAGGCCCTTTTACTT 58.089 50.000 0.00 0.00 0.00 2.24
2522 2567 1.813178 GCAGTCAGGCCCTTTTACTTC 59.187 52.381 0.00 0.00 0.00 3.01
2523 2568 2.814097 GCAGTCAGGCCCTTTTACTTCA 60.814 50.000 0.00 0.00 0.00 3.02
2532 2577 5.104485 AGGCCCTTTTACTTCAGATAATCGT 60.104 40.000 0.00 0.00 0.00 3.73
2537 2582 7.382759 CCCTTTTACTTCAGATAATCGTAGCTC 59.617 40.741 0.00 0.00 0.00 4.09
2581 2626 2.172505 TCATAACATCGATGCCCAAGGT 59.827 45.455 25.11 0.56 0.00 3.50
2583 2628 0.038166 AACATCGATGCCCAAGGTGT 59.962 50.000 25.11 0.50 0.00 4.16
2590 2637 1.136329 ATGCCCAAGGTGTCAGTCCT 61.136 55.000 0.00 0.00 36.81 3.85
2596 2643 2.841442 AAGGTGTCAGTCCTTGCTAC 57.159 50.000 0.00 0.00 42.79 3.58
2608 2655 2.037902 TCCTTGCTACATGGTCGTTTCA 59.962 45.455 0.00 0.00 31.64 2.69
2667 2715 6.433847 TTTAGAACCAAGGATTCTCACTGA 57.566 37.500 7.06 0.00 37.57 3.41
2671 2719 2.569404 ACCAAGGATTCTCACTGAGGAC 59.431 50.000 6.20 0.00 0.00 3.85
2672 2720 2.568956 CCAAGGATTCTCACTGAGGACA 59.431 50.000 6.20 0.00 0.00 4.02
2673 2721 3.199508 CCAAGGATTCTCACTGAGGACAT 59.800 47.826 6.20 0.00 0.00 3.06
2707 2755 8.767478 AAAACATGCATCTGGAAAATAGAAAG 57.233 30.769 0.00 0.00 0.00 2.62
2709 2757 8.579850 AACATGCATCTGGAAAATAGAAAGTA 57.420 30.769 0.00 0.00 0.00 2.24
2710 2758 7.989826 ACATGCATCTGGAAAATAGAAAGTAC 58.010 34.615 0.00 0.00 0.00 2.73
2711 2759 6.662414 TGCATCTGGAAAATAGAAAGTACG 57.338 37.500 0.00 0.00 0.00 3.67
2712 2760 5.584649 TGCATCTGGAAAATAGAAAGTACGG 59.415 40.000 0.00 0.00 0.00 4.02
2764 2818 5.360714 ACCATTGTCATGATTTGGTATCACC 59.639 40.000 19.72 0.00 38.87 4.02
2769 2823 5.044919 TGTCATGATTTGGTATCACCCTCTT 60.045 40.000 0.00 0.00 37.50 2.85
2771 2825 5.429762 TCATGATTTGGTATCACCCTCTTCT 59.570 40.000 0.00 0.00 37.50 2.85
2783 2837 4.349636 TCACCCTCTTCTGTTTCCATGTAA 59.650 41.667 0.00 0.00 0.00 2.41
2787 2841 5.770162 CCCTCTTCTGTTTCCATGTAAAGTT 59.230 40.000 0.00 0.00 0.00 2.66
2816 2870 7.282450 TGCTCTCTAATGTACTCGATTACTTCA 59.718 37.037 13.34 0.00 0.00 3.02
2908 2964 8.974238 ACAGGAATCAACAATGATACATCAAAT 58.026 29.630 0.00 0.00 45.60 2.32
2958 3016 7.282585 AGCATCTAATTATACAGGAAGCAACA 58.717 34.615 2.91 0.00 0.00 3.33
2972 3030 8.462016 ACAGGAAGCAACATAGATAAAAATGTC 58.538 33.333 0.00 0.00 35.30 3.06
3041 3100 7.461182 ACCGAAATGATGTTATCCTGAAAAA 57.539 32.000 0.00 0.00 0.00 1.94
3042 3101 7.312899 ACCGAAATGATGTTATCCTGAAAAAC 58.687 34.615 0.00 0.00 0.00 2.43
3054 3113 5.004361 TCCTGAAAAACATACATGGGGAA 57.996 39.130 0.00 0.00 0.00 3.97
3056 3115 5.245075 TCCTGAAAAACATACATGGGGAAAC 59.755 40.000 0.00 0.00 0.00 2.78
3058 3117 5.848406 TGAAAAACATACATGGGGAAACAC 58.152 37.500 0.00 0.00 0.00 3.32
3083 3142 7.445096 ACACATGTGAGTAAAAATCATCAGTCA 59.555 33.333 31.94 0.00 0.00 3.41
3084 3143 7.961283 CACATGTGAGTAAAAATCATCAGTCAG 59.039 37.037 21.64 0.00 0.00 3.51
3089 3148 5.178797 AGTAAAAATCATCAGTCAGTCGGG 58.821 41.667 0.00 0.00 0.00 5.14
3090 3149 3.703001 AAAATCATCAGTCAGTCGGGT 57.297 42.857 0.00 0.00 0.00 5.28
3091 3150 4.819105 AAAATCATCAGTCAGTCGGGTA 57.181 40.909 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.851195 CCATGGGCCACTAGTCAATAC 58.149 52.381 9.28 0.00 0.00 1.89
6 7 2.998097 GCCATGGGCCACTAGTCA 59.002 61.111 9.28 0.00 44.06 3.41
131 132 2.091885 GGGCTCCTGGATTTGATAACCA 60.092 50.000 0.00 0.00 0.00 3.67
136 137 1.533711 CGGGGCTCCTGGATTTGAT 59.466 57.895 0.00 0.00 0.00 2.57
175 176 3.350031 AAGCCCGCCTGCAGCTAAT 62.350 57.895 8.66 0.00 40.39 1.73
206 207 0.034186 AAAATGGCGCCATCTGGAGA 60.034 50.000 40.38 12.42 37.14 3.71
245 246 4.865365 GCAAGTCCACAACACTATACTCTC 59.135 45.833 0.00 0.00 0.00 3.20
257 261 2.418368 AACACAGAGCAAGTCCACAA 57.582 45.000 0.00 0.00 0.00 3.33
258 262 2.092968 AGAAACACAGAGCAAGTCCACA 60.093 45.455 0.00 0.00 0.00 4.17
259 263 2.565841 AGAAACACAGAGCAAGTCCAC 58.434 47.619 0.00 0.00 0.00 4.02
269 273 5.542635 ACATGTCCTACCTTAGAAACACAGA 59.457 40.000 0.00 0.00 0.00 3.41
272 276 4.392138 GCACATGTCCTACCTTAGAAACAC 59.608 45.833 0.00 0.00 0.00 3.32
296 300 5.768662 GGTCGATGGCTATATATACTGCCTA 59.231 44.000 21.35 12.50 45.11 3.93
299 303 5.508153 CCTGGTCGATGGCTATATATACTGC 60.508 48.000 0.00 1.39 0.00 4.40
301 305 5.141182 CCCTGGTCGATGGCTATATATACT 58.859 45.833 0.00 0.00 0.00 2.12
374 378 8.794335 TGGTGTTTATTGTATGCATTAGTGTA 57.206 30.769 3.54 0.00 0.00 2.90
396 400 8.574251 TGCACTGTCACTATAAATAAAATGGT 57.426 30.769 0.00 0.00 0.00 3.55
424 428 6.017192 TGCACATGTCATGGTTTATAGTATGC 60.017 38.462 17.08 12.78 33.60 3.14
478 482 8.792830 ATGTGGCATTCAACATATACTATACC 57.207 34.615 0.00 0.00 0.00 2.73
625 634 3.005684 TCATGGCATTTTTCGTCTTTGCT 59.994 39.130 0.00 0.00 33.86 3.91
749 762 3.246699 TCACGATTCGTCCACAGTTTTTC 59.753 43.478 9.11 0.00 38.32 2.29
817 830 8.326529 CCCAAGAACTAGGGTTTCTAATTTCTA 58.673 37.037 0.00 0.00 40.34 2.10
898 923 0.999406 CATCTCACGTTGGGCTTACG 59.001 55.000 9.68 9.68 44.20 3.18
936 963 3.760035 CCGTGGGAGTGGGACGAG 61.760 72.222 0.00 0.00 35.05 4.18
963 990 1.152839 GAGGACGGAGGGAGAGAGG 60.153 68.421 0.00 0.00 0.00 3.69
1696 1738 0.818445 TACCAGCGGTCGATCTCCTC 60.818 60.000 3.45 0.00 37.09 3.71
1832 1874 4.716977 GGGACCCGGAGAGGTGGT 62.717 72.222 0.73 0.00 41.42 4.16
1965 2007 1.612442 GTGGAGGCTGGGGTACTCA 60.612 63.158 0.00 0.00 32.98 3.41
2127 2169 1.535685 ATGAGGCTTCATGAGGGCC 59.464 57.895 25.09 25.10 42.41 5.80
2158 2200 1.874345 GCAGCAGCAACAGAAGGCAT 61.874 55.000 0.00 0.00 41.58 4.40
2205 2250 0.890996 AGCCAACAACACTAGCAGCC 60.891 55.000 0.00 0.00 0.00 4.85
2249 2294 8.251750 TCAGTAAGTAATTTGATGTGCTACAC 57.748 34.615 0.00 0.00 34.56 2.90
2317 2362 5.950883 TGAAACTCTCGGTCACAGTAATAG 58.049 41.667 0.00 0.00 0.00 1.73
2364 2409 8.258007 TCAGTCTTTCGACCAACAGAATATATT 58.742 33.333 0.00 0.00 41.16 1.28
2408 2453 6.941857 AGTAGAAGGTTCTTGAATCTTCCTC 58.058 40.000 24.44 19.04 38.70 3.71
2438 2483 6.439636 AGACCAGTATGCCATACACAATAT 57.560 37.500 16.74 0.00 38.21 1.28
2449 2494 4.357918 AATGTATGGAGACCAGTATGCC 57.642 45.455 0.00 0.00 36.75 4.40
2452 2497 7.292356 TGGATGTAAATGTATGGAGACCAGTAT 59.708 37.037 0.00 0.00 36.75 2.12
2472 2517 9.970553 ATTATTATTAGCATCATGACTGGATGT 57.029 29.630 0.00 0.00 43.17 3.06
2510 2555 6.073711 GCTACGATTATCTGAAGTAAAAGGGC 60.074 42.308 0.00 0.00 0.00 5.19
2514 2559 7.478322 ACGAGCTACGATTATCTGAAGTAAAA 58.522 34.615 11.64 0.00 45.77 1.52
2517 2562 5.107568 CGACGAGCTACGATTATCTGAAGTA 60.108 44.000 11.64 0.00 45.77 2.24
2519 2564 4.145276 CGACGAGCTACGATTATCTGAAG 58.855 47.826 11.64 0.00 45.77 3.02
2520 2565 3.606384 GCGACGAGCTACGATTATCTGAA 60.606 47.826 11.64 0.00 45.77 3.02
2521 2566 2.096367 GCGACGAGCTACGATTATCTGA 60.096 50.000 11.64 0.00 45.77 3.27
2522 2567 2.235020 GCGACGAGCTACGATTATCTG 58.765 52.381 11.64 0.00 45.77 2.90
2523 2568 2.598000 GCGACGAGCTACGATTATCT 57.402 50.000 11.64 0.00 45.77 1.98
2557 2602 4.393062 CCTTGGGCATCGATGTTATGATAC 59.607 45.833 25.47 7.02 0.00 2.24
2569 2614 1.003355 ACTGACACCTTGGGCATCG 60.003 57.895 0.00 0.00 0.00 3.84
2572 2617 1.352622 AAGGACTGACACCTTGGGCA 61.353 55.000 0.00 0.00 44.73 5.36
2581 2626 1.977854 ACCATGTAGCAAGGACTGACA 59.022 47.619 0.00 0.00 0.00 3.58
2583 2628 1.204704 CGACCATGTAGCAAGGACTGA 59.795 52.381 0.00 0.00 0.00 3.41
2590 2637 4.261405 CCTTTTGAAACGACCATGTAGCAA 60.261 41.667 0.00 0.00 0.00 3.91
2595 2642 2.306847 AGCCTTTTGAAACGACCATGT 58.693 42.857 0.00 0.00 0.00 3.21
2596 2643 3.052036 CAAGCCTTTTGAAACGACCATG 58.948 45.455 0.00 0.00 0.00 3.66
2608 2655 0.459489 TTCGCAGTTGCAAGCCTTTT 59.541 45.000 0.00 0.00 42.21 2.27
2639 2686 8.437575 AGTGAGAATCCTTGGTTCTAAAACTTA 58.562 33.333 0.00 0.00 36.13 2.24
2682 2730 8.370182 ACTTTCTATTTTCCAGATGCATGTTTT 58.630 29.630 2.46 0.00 0.00 2.43
2703 2751 2.737252 CCAGCAGTCTTTCCGTACTTTC 59.263 50.000 0.00 0.00 0.00 2.62
2704 2752 2.550208 CCCAGCAGTCTTTCCGTACTTT 60.550 50.000 0.00 0.00 0.00 2.66
2706 2754 0.608640 CCCAGCAGTCTTTCCGTACT 59.391 55.000 0.00 0.00 0.00 2.73
2707 2755 0.320697 ACCCAGCAGTCTTTCCGTAC 59.679 55.000 0.00 0.00 0.00 3.67
2709 2757 0.608640 CTACCCAGCAGTCTTTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
2710 2758 0.895530 TCTACCCAGCAGTCTTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
2711 2759 1.208293 CCTCTACCCAGCAGTCTTTCC 59.792 57.143 0.00 0.00 0.00 3.13
2712 2760 1.903183 ACCTCTACCCAGCAGTCTTTC 59.097 52.381 0.00 0.00 0.00 2.62
2754 2808 4.263331 GGAAACAGAAGAGGGTGATACCAA 60.263 45.833 0.00 0.00 41.02 3.67
2783 2837 5.864474 CGAGTACATTAGAGAGCACAAACTT 59.136 40.000 0.00 0.00 0.00 2.66
2787 2841 5.836821 ATCGAGTACATTAGAGAGCACAA 57.163 39.130 0.00 0.00 0.00 3.33
2876 2930 9.631257 TGTATCATTGTTGATTCCTGTATTCAT 57.369 29.630 0.00 0.00 42.61 2.57
2877 2931 9.631257 ATGTATCATTGTTGATTCCTGTATTCA 57.369 29.630 0.00 0.00 42.61 2.57
2881 2937 9.460019 TTTGATGTATCATTGTTGATTCCTGTA 57.540 29.630 0.00 0.00 42.61 2.74
2934 2992 7.496529 TGTTGCTTCCTGTATAATTAGATGC 57.503 36.000 0.00 0.00 0.00 3.91
2950 3008 8.462016 AGGTGACATTTTTATCTATGTTGCTTC 58.538 33.333 0.00 0.00 35.24 3.86
2953 3011 9.503427 GTAAGGTGACATTTTTATCTATGTTGC 57.497 33.333 0.00 0.00 35.24 4.17
2964 3022 9.220767 GTTCATCTAGAGTAAGGTGACATTTTT 57.779 33.333 0.00 0.00 36.35 1.94
2968 3026 6.892456 TCAGTTCATCTAGAGTAAGGTGACAT 59.108 38.462 0.00 0.00 36.35 3.06
2969 3027 6.246163 TCAGTTCATCTAGAGTAAGGTGACA 58.754 40.000 0.00 0.00 36.35 3.58
2970 3028 6.761099 TCAGTTCATCTAGAGTAAGGTGAC 57.239 41.667 0.00 0.00 36.35 3.67
2972 3030 7.284261 TCAGATCAGTTCATCTAGAGTAAGGTG 59.716 40.741 0.00 0.00 31.47 4.00
2983 3042 4.639310 GTGCCAAATCAGATCAGTTCATCT 59.361 41.667 0.00 0.00 33.00 2.90
3041 3100 3.517296 TGTGTGTTTCCCCATGTATGT 57.483 42.857 0.00 0.00 0.00 2.29
3042 3101 3.763360 ACATGTGTGTTTCCCCATGTATG 59.237 43.478 0.00 0.00 44.38 2.39
3048 3107 1.214175 ACTCACATGTGTGTTTCCCCA 59.786 47.619 24.13 3.12 45.76 4.96
3049 3108 1.981256 ACTCACATGTGTGTTTCCCC 58.019 50.000 24.13 0.00 45.76 4.81
3054 3113 7.939782 TGATGATTTTTACTCACATGTGTGTT 58.060 30.769 31.67 17.69 45.76 3.32
3056 3115 7.587629 ACTGATGATTTTTACTCACATGTGTG 58.412 34.615 24.63 23.70 46.91 3.82
3058 3117 7.809665 TGACTGATGATTTTTACTCACATGTG 58.190 34.615 20.18 20.18 0.00 3.21
3068 3127 5.160607 ACCCGACTGACTGATGATTTTTA 57.839 39.130 0.00 0.00 0.00 1.52
3072 3131 3.769844 ACTTACCCGACTGACTGATGATT 59.230 43.478 0.00 0.00 0.00 2.57
3073 3132 3.366396 ACTTACCCGACTGACTGATGAT 58.634 45.455 0.00 0.00 0.00 2.45
3074 3133 2.803956 ACTTACCCGACTGACTGATGA 58.196 47.619 0.00 0.00 0.00 2.92
3075 3134 4.673441 CTTACTTACCCGACTGACTGATG 58.327 47.826 0.00 0.00 0.00 3.07
3076 3135 3.130693 GCTTACTTACCCGACTGACTGAT 59.869 47.826 0.00 0.00 0.00 2.90
3077 3136 2.490903 GCTTACTTACCCGACTGACTGA 59.509 50.000 0.00 0.00 0.00 3.41
3078 3137 2.492484 AGCTTACTTACCCGACTGACTG 59.508 50.000 0.00 0.00 0.00 3.51
3083 3142 2.291411 TGAGGAGCTTACTTACCCGACT 60.291 50.000 0.00 0.00 0.00 4.18
3084 3143 2.097825 TGAGGAGCTTACTTACCCGAC 58.902 52.381 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.