Multiple sequence alignment - TraesCS6A01G385700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G385700 chr6A 100.000 4108 0 0 1 4108 603190897 603195004 0.000000e+00 7587
1 TraesCS6A01G385700 chr6B 83.874 2406 250 89 1 2340 694124457 694126790 0.000000e+00 2167
2 TraesCS6A01G385700 chr6B 81.190 1361 153 55 2598 3894 694126959 694128280 0.000000e+00 1000
3 TraesCS6A01G385700 chr6B 88.913 460 48 3 1779 2236 506170702 506171160 7.710000e-157 564
4 TraesCS6A01G385700 chr6B 92.941 85 3 1 2719 2800 146382586 146382670 2.010000e-23 121
5 TraesCS6A01G385700 chr6D 88.180 1286 97 25 2 1261 456462659 456463915 0.000000e+00 1482
6 TraesCS6A01G385700 chr6D 85.190 817 69 25 2680 3477 456465148 456465931 0.000000e+00 791
7 TraesCS6A01G385700 chr6D 85.403 781 91 11 1684 2443 456464257 456465035 0.000000e+00 789
8 TraesCS6A01G385700 chr6D 80.500 800 76 36 3338 4089 456466028 456466795 1.300000e-149 540
9 TraesCS6A01G385700 chr1B 86.754 838 87 15 958 1788 232963011 232962191 0.000000e+00 911
10 TraesCS6A01G385700 chr7B 90.395 583 51 4 1207 1788 483311667 483312245 0.000000e+00 761
11 TraesCS6A01G385700 chr7B 88.103 580 65 3 1210 1788 736346289 736345713 0.000000e+00 686
12 TraesCS6A01G385700 chr2B 90.206 582 55 2 1209 1788 16821615 16822196 0.000000e+00 758
13 TraesCS6A01G385700 chr2B 89.501 581 57 3 1210 1788 374398529 374399107 0.000000e+00 732
14 TraesCS6A01G385700 chr2B 89.175 582 57 5 1209 1788 322310339 322309762 0.000000e+00 721
15 TraesCS6A01G385700 chr2B 88.985 581 59 4 1209 1788 407862316 407861740 0.000000e+00 713
16 TraesCS6A01G385700 chr2B 88.962 453 48 2 1786 2236 19184991 19184539 3.590000e-155 558
17 TraesCS6A01G385700 chr2B 90.909 110 5 4 958 1063 407862692 407862584 4.280000e-30 143
18 TraesCS6A01G385700 chr4B 90.034 582 54 3 1209 1788 592539061 592539640 0.000000e+00 750
19 TraesCS6A01G385700 chr4B 89.329 581 58 3 1209 1788 473670814 473670237 0.000000e+00 726
20 TraesCS6A01G385700 chr4B 89.412 510 51 3 1784 2293 637471790 637471284 1.250000e-179 640
21 TraesCS6A01G385700 chr4B 87.549 506 61 2 1784 2289 313258668 313259171 5.920000e-163 584
22 TraesCS6A01G385700 chr4B 81.818 330 41 13 958 1283 208020624 208020310 4.070000e-65 259
23 TraesCS6A01G385700 chr4B 81.818 330 40 14 958 1283 363880433 363880120 4.070000e-65 259
24 TraesCS6A01G385700 chr4B 81.818 330 41 12 955 1280 367070019 367070333 4.070000e-65 259
25 TraesCS6A01G385700 chr5B 86.731 520 65 3 1779 2296 651568238 651568755 3.560000e-160 575
26 TraesCS6A01G385700 chr5B 93.396 106 5 2 958 1063 435850144 435850041 5.500000e-34 156
27 TraesCS6A01G385700 chr4A 88.913 460 48 3 1779 2236 735512594 735513052 7.710000e-157 564
28 TraesCS6A01G385700 chr7A 88.696 460 49 3 1779 2236 718416116 718416574 3.590000e-155 558
29 TraesCS6A01G385700 chr7A 84.286 280 35 5 1021 1300 598322357 598322087 8.760000e-67 265
30 TraesCS6A01G385700 chr3B 81.212 330 39 15 958 1283 351867712 351867402 1.140000e-60 244
31 TraesCS6A01G385700 chr3B 80.896 335 40 16 955 1283 705239997 705239681 4.100000e-60 243
32 TraesCS6A01G385700 chr3B 80.243 329 48 11 956 1283 72568040 72567728 8.880000e-57 231
33 TraesCS6A01G385700 chr2D 80.675 326 46 10 955 1280 103678241 103678549 1.910000e-58 237
34 TraesCS6A01G385700 chr1D 92.920 113 2 6 955 1063 473888482 473888592 4.250000e-35 159
35 TraesCS6A01G385700 chr1D 87.970 133 12 3 955 1083 487325491 487325623 1.980000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G385700 chr6A 603190897 603195004 4107 False 7587.0 7587 100.00000 1 4108 1 chr6A.!!$F1 4107
1 TraesCS6A01G385700 chr6B 694124457 694128280 3823 False 1583.5 2167 82.53200 1 3894 2 chr6B.!!$F3 3893
2 TraesCS6A01G385700 chr6D 456462659 456466795 4136 False 900.5 1482 84.81825 2 4089 4 chr6D.!!$F1 4087
3 TraesCS6A01G385700 chr1B 232962191 232963011 820 True 911.0 911 86.75400 958 1788 1 chr1B.!!$R1 830
4 TraesCS6A01G385700 chr7B 483311667 483312245 578 False 761.0 761 90.39500 1207 1788 1 chr7B.!!$F1 581
5 TraesCS6A01G385700 chr7B 736345713 736346289 576 True 686.0 686 88.10300 1210 1788 1 chr7B.!!$R1 578
6 TraesCS6A01G385700 chr2B 16821615 16822196 581 False 758.0 758 90.20600 1209 1788 1 chr2B.!!$F1 579
7 TraesCS6A01G385700 chr2B 374398529 374399107 578 False 732.0 732 89.50100 1210 1788 1 chr2B.!!$F2 578
8 TraesCS6A01G385700 chr2B 322309762 322310339 577 True 721.0 721 89.17500 1209 1788 1 chr2B.!!$R2 579
9 TraesCS6A01G385700 chr2B 407861740 407862692 952 True 428.0 713 89.94700 958 1788 2 chr2B.!!$R3 830
10 TraesCS6A01G385700 chr4B 592539061 592539640 579 False 750.0 750 90.03400 1209 1788 1 chr4B.!!$F3 579
11 TraesCS6A01G385700 chr4B 473670237 473670814 577 True 726.0 726 89.32900 1209 1788 1 chr4B.!!$R3 579
12 TraesCS6A01G385700 chr4B 637471284 637471790 506 True 640.0 640 89.41200 1784 2293 1 chr4B.!!$R4 509
13 TraesCS6A01G385700 chr4B 313258668 313259171 503 False 584.0 584 87.54900 1784 2289 1 chr4B.!!$F1 505
14 TraesCS6A01G385700 chr5B 651568238 651568755 517 False 575.0 575 86.73100 1779 2296 1 chr5B.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.111061 AAGCAGAACATCAGCACCCA 59.889 50.0 0.0 0.0 30.69 4.51 F
1094 1150 0.248134 GTGGCAGTCTCGTAGCGTAG 60.248 60.0 0.0 0.0 0.00 3.51 F
2652 3020 0.246635 GCTGTCTGAGGCTTTCCGTA 59.753 55.0 0.0 0.0 37.47 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1941 0.038166 TGTCCAAGGGTTCATCCAGC 59.962 55.0 0.00 0.00 38.11 4.85 R
3006 3396 0.108520 CCTGCACAACCAATGGATGC 60.109 55.0 6.16 13.22 36.81 3.91 R
3708 4365 0.032403 TGCTGTTTGTGCCTTCATGC 59.968 50.0 0.00 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.939760 TATCCATCCCCACGACCGCT 62.940 60.000 0.00 0.00 0.00 5.52
45 46 1.213013 GACCGCTTCGAGAAGAGCA 59.787 57.895 16.23 0.00 40.79 4.26
66 67 0.389948 GGATGTTCTCCACGCTCGTT 60.390 55.000 0.00 0.00 44.26 3.85
175 176 0.111061 AAGCAGAACATCAGCACCCA 59.889 50.000 0.00 0.00 30.69 4.51
278 279 2.876645 GCCGCGTCGAACTCTCTG 60.877 66.667 4.92 0.00 0.00 3.35
284 285 1.585006 GTCGAACTCTCTGGCGGAA 59.415 57.895 0.00 0.00 0.00 4.30
296 297 0.968901 TGGCGGAATCCTCGTACTGT 60.969 55.000 0.00 0.00 0.00 3.55
302 303 1.065251 GAATCCTCGTACTGTCCGGAC 59.935 57.143 28.17 28.17 0.00 4.79
329 330 1.344763 AGGTTCCTGAAGACCTGAACG 59.655 52.381 0.00 0.00 44.40 3.95
382 384 2.636830 GCACCTCACATACAGCATTCT 58.363 47.619 0.00 0.00 0.00 2.40
384 386 2.353889 CACCTCACATACAGCATTCTGC 59.646 50.000 0.00 0.00 44.10 4.26
419 421 2.746277 GGTGGCAAGTACGGGCTG 60.746 66.667 13.61 0.00 0.00 4.85
421 423 4.028490 TGGCAAGTACGGGCTGGG 62.028 66.667 13.61 0.00 0.00 4.45
425 427 1.079127 CAAGTACGGGCTGGGACTG 60.079 63.158 0.00 0.00 0.00 3.51
463 468 3.202001 CGGTAACCAGCGCCATGG 61.202 66.667 13.77 13.77 46.47 3.66
549 588 4.401837 GTGGTATTACCTCCTCGAAGAAGT 59.598 45.833 13.90 0.00 39.58 3.01
695 740 2.272146 GCCGCCATTTCCTCCTCA 59.728 61.111 0.00 0.00 0.00 3.86
751 797 1.366854 GGGACGGATCGGCAAGAAAC 61.367 60.000 0.00 0.00 36.10 2.78
753 799 0.672401 GACGGATCGGCAAGAAACCA 60.672 55.000 0.00 0.00 33.63 3.67
792 838 0.463116 TAATTTCTTCCGCGCCCTCC 60.463 55.000 0.00 0.00 0.00 4.30
798 844 4.752879 TCCGCGCCCTCCTTTTCG 62.753 66.667 0.00 0.00 0.00 3.46
800 846 2.125832 CGCGCCCTCCTTTTCGTA 60.126 61.111 0.00 0.00 0.00 3.43
812 858 1.948834 CTTTTCGTAAACCACCCCGTT 59.051 47.619 0.00 0.00 0.00 4.44
826 872 4.127171 CACCCCGTTCTATCCTACATTTG 58.873 47.826 0.00 0.00 0.00 2.32
835 882 5.049828 TCTATCCTACATTTGCGTGTCATG 58.950 41.667 0.00 0.00 33.62 3.07
966 1017 4.523282 GCCTCCCATCCTCCCCCT 62.523 72.222 0.00 0.00 0.00 4.79
1094 1150 0.248134 GTGGCAGTCTCGTAGCGTAG 60.248 60.000 0.00 0.00 0.00 3.51
1096 1152 0.450983 GGCAGTCTCGTAGCGTAGTT 59.549 55.000 0.00 0.00 0.00 2.24
1101 1157 2.005451 GTCTCGTAGCGTAGTTCTGGA 58.995 52.381 0.00 0.00 0.00 3.86
1146 1202 3.894547 ATTTGGAGGCCGAACGCGT 62.895 57.895 5.58 5.58 38.94 6.01
1230 1526 0.528924 TAGATCCGTCGGTGGTTGTG 59.471 55.000 11.88 0.00 0.00 3.33
1231 1527 1.005394 GATCCGTCGGTGGTTGTGT 60.005 57.895 11.88 0.00 0.00 3.72
1353 1653 2.044946 GGATCGTTGCCTTGCCCT 60.045 61.111 0.00 0.00 0.00 5.19
1358 1658 1.007387 CGTTGCCTTGCCCTTGTTC 60.007 57.895 0.00 0.00 0.00 3.18
1385 1685 1.141185 CTTTAGGGCCTTAGAGGGGG 58.859 60.000 13.45 0.00 35.37 5.40
1408 1717 3.521560 TGGAAGTGAACATATCTGCGAC 58.478 45.455 0.00 0.00 0.00 5.19
1414 1723 2.616842 TGAACATATCTGCGACGCTCTA 59.383 45.455 22.08 9.92 0.00 2.43
1423 1732 1.746787 TGCGACGCTCTAATCCTTGTA 59.253 47.619 22.08 0.00 0.00 2.41
1499 1809 5.117897 GCTAGATAGATGTTTGTTAGCTCGC 59.882 44.000 0.00 0.00 31.73 5.03
1624 1941 5.940470 GGCTGGGGAGTTATTGTATTAGATG 59.060 44.000 0.00 0.00 0.00 2.90
1639 1964 2.431954 AGATGCTGGATGAACCCTTG 57.568 50.000 0.00 0.00 38.00 3.61
1674 2000 0.679002 CTGCCCAAGTGGACAGATGG 60.679 60.000 7.85 0.00 39.32 3.51
1702 2028 9.624697 TGTAAATTTTATCAGATGCTTGTGTTC 57.375 29.630 0.00 0.00 0.00 3.18
1726 2052 5.707242 TCTTGGCTCGGTAAGTAGATATG 57.293 43.478 0.00 0.00 0.00 1.78
1727 2053 4.523173 TCTTGGCTCGGTAAGTAGATATGG 59.477 45.833 0.00 0.00 0.00 2.74
1752 2080 7.245604 GTCCTTGTTTAACTTTGAAGAAACGA 58.754 34.615 0.00 0.00 35.09 3.85
1776 2104 8.578769 CGATCATGATACTGTGTAATCATAACG 58.421 37.037 8.54 0.00 40.10 3.18
1818 2156 7.442364 TGCATCTCTAGATTATTGGTTTAGTGC 59.558 37.037 0.00 0.00 31.21 4.40
2173 2514 7.148407 GGTGTCTTCATGTACTTTGAAGGTATG 60.148 40.741 25.59 8.00 46.50 2.39
2177 2518 5.185454 TCATGTACTTTGAAGGTATGGCTG 58.815 41.667 0.00 0.00 0.00 4.85
2187 2528 6.313519 TGAAGGTATGGCTGAGTTCTTATT 57.686 37.500 0.00 0.00 0.00 1.40
2188 2529 6.115446 TGAAGGTATGGCTGAGTTCTTATTG 58.885 40.000 0.00 0.00 0.00 1.90
2192 2533 5.880332 GGTATGGCTGAGTTCTTATTGTGAA 59.120 40.000 0.00 0.00 0.00 3.18
2195 2537 4.701651 TGGCTGAGTTCTTATTGTGAATGG 59.298 41.667 0.00 0.00 0.00 3.16
2261 2603 4.937620 TGAGTTTGCTGTCTATTAAGCTGG 59.062 41.667 0.00 0.00 40.21 4.85
2316 2661 7.814107 CACTTGCTTTACATGTTGTATGGAATT 59.186 33.333 2.30 0.00 34.59 2.17
2321 2666 8.028938 GCTTTACATGTTGTATGGAATTTCTGT 58.971 33.333 2.30 0.00 32.20 3.41
2322 2667 9.345517 CTTTACATGTTGTATGGAATTTCTGTG 57.654 33.333 2.30 0.00 32.20 3.66
2336 2681 6.366061 GGAATTTCTGTGAAATTACACTTGCC 59.634 38.462 18.00 10.45 40.87 4.52
2341 2686 4.930963 TGTGAAATTACACTTGCCTGTTG 58.069 39.130 0.00 0.00 40.87 3.33
2344 2689 6.095580 TGTGAAATTACACTTGCCTGTTGTTA 59.904 34.615 0.00 0.00 40.87 2.41
2347 2692 6.709018 AATTACACTTGCCTGTTGTTACTT 57.291 33.333 0.00 0.00 0.00 2.24
2349 2694 2.099098 ACACTTGCCTGTTGTTACTTGC 59.901 45.455 0.00 0.00 0.00 4.01
2352 2714 1.317613 TGCCTGTTGTTACTTGCTGG 58.682 50.000 0.00 0.00 0.00 4.85
2374 2736 8.712285 CTGGAAGCAAATTTAATTCATCATGT 57.288 30.769 13.56 0.00 0.00 3.21
2425 2787 3.995199 TCACATGAAGAGTGAACACCTC 58.005 45.455 0.00 0.00 42.57 3.85
2443 2805 3.117888 ACCTCTTCACTGTGGTCATTTGT 60.118 43.478 8.11 0.00 0.00 2.83
2456 2818 3.983344 GGTCATTTGTCACAATGAAGCAC 59.017 43.478 0.00 2.64 37.19 4.40
2483 2851 5.125417 GCAAATTGGCCAGAAGAACATAGTA 59.875 40.000 5.11 0.00 0.00 1.82
2497 2865 9.424319 GAAGAACATAGTACAATCTTCTGTTGA 57.576 33.333 13.96 0.00 41.61 3.18
2513 2881 9.403583 TCTTCTGTTGAATTATGTAATTACCCC 57.596 33.333 13.01 0.00 36.13 4.95
2514 2882 9.408648 CTTCTGTTGAATTATGTAATTACCCCT 57.591 33.333 13.01 1.01 36.13 4.79
2515 2883 9.762381 TTCTGTTGAATTATGTAATTACCCCTT 57.238 29.630 13.01 1.97 36.13 3.95
2516 2884 9.184523 TCTGTTGAATTATGTAATTACCCCTTG 57.815 33.333 13.01 0.00 36.13 3.61
2517 2885 8.299990 TGTTGAATTATGTAATTACCCCTTGG 57.700 34.615 13.01 0.00 36.13 3.61
2520 2888 6.322712 TGAATTATGTAATTACCCCTTGGCAC 59.677 38.462 13.01 0.00 36.13 5.01
2521 2889 3.748645 ATGTAATTACCCCTTGGCACA 57.251 42.857 13.01 0.00 33.59 4.57
2522 2890 3.748645 TGTAATTACCCCTTGGCACAT 57.251 42.857 13.01 0.00 39.30 3.21
2523 2891 3.360867 TGTAATTACCCCTTGGCACATG 58.639 45.455 13.01 0.00 39.30 3.21
2524 2892 2.621556 AATTACCCCTTGGCACATGT 57.378 45.000 0.00 0.00 39.30 3.21
2526 2894 3.748645 ATTACCCCTTGGCACATGTTA 57.251 42.857 0.00 0.00 39.30 2.41
2527 2895 3.748645 TTACCCCTTGGCACATGTTAT 57.251 42.857 0.00 0.00 39.30 1.89
2528 2896 4.864483 TTACCCCTTGGCACATGTTATA 57.136 40.909 0.00 0.00 39.30 0.98
2529 2897 3.748645 ACCCCTTGGCACATGTTATAA 57.251 42.857 0.00 0.00 39.30 0.98
2530 2898 3.631250 ACCCCTTGGCACATGTTATAAG 58.369 45.455 0.00 0.63 39.30 1.73
2531 2899 2.362077 CCCCTTGGCACATGTTATAAGC 59.638 50.000 0.00 0.00 39.30 3.09
2532 2900 3.023119 CCCTTGGCACATGTTATAAGCA 58.977 45.455 0.00 0.00 39.30 3.91
2533 2901 3.638160 CCCTTGGCACATGTTATAAGCAT 59.362 43.478 0.00 0.00 39.30 3.79
2534 2902 4.261741 CCCTTGGCACATGTTATAAGCATC 60.262 45.833 0.00 0.00 39.30 3.91
2535 2903 4.581824 CCTTGGCACATGTTATAAGCATCT 59.418 41.667 0.00 0.00 39.30 2.90
2536 2904 5.278169 CCTTGGCACATGTTATAAGCATCTC 60.278 44.000 0.00 0.00 39.30 2.75
2537 2905 4.779696 TGGCACATGTTATAAGCATCTCA 58.220 39.130 0.00 0.00 0.00 3.27
2538 2906 4.818005 TGGCACATGTTATAAGCATCTCAG 59.182 41.667 0.00 0.00 0.00 3.35
2539 2907 4.320057 GGCACATGTTATAAGCATCTCAGC 60.320 45.833 0.00 0.00 0.00 4.26
2541 2909 5.560375 GCACATGTTATAAGCATCTCAGCTG 60.560 44.000 7.63 7.63 45.89 4.24
2542 2910 5.756833 CACATGTTATAAGCATCTCAGCTGA 59.243 40.000 17.19 17.19 45.89 4.26
2543 2911 6.427242 CACATGTTATAAGCATCTCAGCTGAT 59.573 38.462 18.63 3.37 45.89 2.90
2544 2912 7.601508 CACATGTTATAAGCATCTCAGCTGATA 59.398 37.037 18.63 11.08 45.89 2.15
2545 2913 8.152898 ACATGTTATAAGCATCTCAGCTGATAA 58.847 33.333 18.63 9.23 45.89 1.75
2546 2914 8.996271 CATGTTATAAGCATCTCAGCTGATAAA 58.004 33.333 18.63 6.46 45.18 1.40
2547 2915 8.370493 TGTTATAAGCATCTCAGCTGATAAAC 57.630 34.615 18.63 9.83 45.18 2.01
2548 2916 8.206867 TGTTATAAGCATCTCAGCTGATAAACT 58.793 33.333 18.63 10.10 45.18 2.66
2549 2917 8.494347 GTTATAAGCATCTCAGCTGATAAACTG 58.506 37.037 18.63 11.15 45.18 3.16
2550 2918 4.484537 AGCATCTCAGCTGATAAACTGT 57.515 40.909 18.63 0.00 44.66 3.55
2551 2919 4.841422 AGCATCTCAGCTGATAAACTGTT 58.159 39.130 18.63 5.85 44.66 3.16
2552 2920 4.634883 AGCATCTCAGCTGATAAACTGTTG 59.365 41.667 18.63 10.51 44.66 3.33
2553 2921 4.633126 GCATCTCAGCTGATAAACTGTTGA 59.367 41.667 18.63 7.94 36.60 3.18
2554 2922 5.447010 GCATCTCAGCTGATAAACTGTTGAC 60.447 44.000 18.63 3.25 35.01 3.18
2555 2923 5.213891 TCTCAGCTGATAAACTGTTGACA 57.786 39.130 18.63 0.00 35.01 3.58
2556 2924 5.798132 TCTCAGCTGATAAACTGTTGACAT 58.202 37.500 18.63 0.00 35.01 3.06
2557 2925 5.871524 TCTCAGCTGATAAACTGTTGACATC 59.128 40.000 18.63 0.00 35.01 3.06
2558 2926 5.798132 TCAGCTGATAAACTGTTGACATCT 58.202 37.500 13.74 0.00 34.21 2.90
2559 2927 6.233434 TCAGCTGATAAACTGTTGACATCTT 58.767 36.000 13.74 0.00 34.21 2.40
2560 2928 6.712095 TCAGCTGATAAACTGTTGACATCTTT 59.288 34.615 13.74 0.00 34.21 2.52
2561 2929 7.229306 TCAGCTGATAAACTGTTGACATCTTTT 59.771 33.333 13.74 0.00 34.21 2.27
2562 2930 7.536622 CAGCTGATAAACTGTTGACATCTTTTC 59.463 37.037 8.42 0.00 32.38 2.29
2563 2931 7.446625 AGCTGATAAACTGTTGACATCTTTTCT 59.553 33.333 0.00 0.00 0.00 2.52
2564 2932 8.078596 GCTGATAAACTGTTGACATCTTTTCTT 58.921 33.333 0.00 0.00 0.00 2.52
2565 2933 9.604626 CTGATAAACTGTTGACATCTTTTCTTC 57.395 33.333 0.00 0.00 0.00 2.87
2566 2934 8.282592 TGATAAACTGTTGACATCTTTTCTTCG 58.717 33.333 0.00 0.00 0.00 3.79
2567 2935 6.436843 AAACTGTTGACATCTTTTCTTCGT 57.563 33.333 0.00 0.00 0.00 3.85
2568 2936 5.659048 ACTGTTGACATCTTTTCTTCGTC 57.341 39.130 0.00 0.00 0.00 4.20
2569 2937 4.511826 ACTGTTGACATCTTTTCTTCGTCC 59.488 41.667 0.00 0.00 0.00 4.79
2570 2938 4.447290 TGTTGACATCTTTTCTTCGTCCA 58.553 39.130 0.00 0.00 0.00 4.02
2571 2939 5.063204 TGTTGACATCTTTTCTTCGTCCAT 58.937 37.500 0.00 0.00 0.00 3.41
2572 2940 5.049474 TGTTGACATCTTTTCTTCGTCCATG 60.049 40.000 0.00 0.00 0.00 3.66
2573 2941 4.641396 TGACATCTTTTCTTCGTCCATGT 58.359 39.130 0.00 0.00 0.00 3.21
2574 2942 4.452114 TGACATCTTTTCTTCGTCCATGTG 59.548 41.667 0.00 0.00 0.00 3.21
2575 2943 4.641396 ACATCTTTTCTTCGTCCATGTGA 58.359 39.130 0.00 0.00 0.00 3.58
2576 2944 4.692625 ACATCTTTTCTTCGTCCATGTGAG 59.307 41.667 0.00 0.00 0.00 3.51
2577 2945 4.600692 TCTTTTCTTCGTCCATGTGAGA 57.399 40.909 0.00 0.00 0.00 3.27
2578 2946 4.956085 TCTTTTCTTCGTCCATGTGAGAA 58.044 39.130 0.00 0.00 0.00 2.87
2579 2947 5.551233 TCTTTTCTTCGTCCATGTGAGAAT 58.449 37.500 0.00 0.00 0.00 2.40
2580 2948 5.409520 TCTTTTCTTCGTCCATGTGAGAATG 59.590 40.000 0.00 0.00 0.00 2.67
2581 2949 2.621338 TCTTCGTCCATGTGAGAATGC 58.379 47.619 0.00 0.00 0.00 3.56
2582 2950 2.234661 TCTTCGTCCATGTGAGAATGCT 59.765 45.455 0.00 0.00 0.00 3.79
2583 2951 2.768253 TCGTCCATGTGAGAATGCTT 57.232 45.000 0.00 0.00 0.00 3.91
2584 2952 3.057969 TCGTCCATGTGAGAATGCTTT 57.942 42.857 0.00 0.00 0.00 3.51
2585 2953 4.200838 TCGTCCATGTGAGAATGCTTTA 57.799 40.909 0.00 0.00 0.00 1.85
2586 2954 4.574892 TCGTCCATGTGAGAATGCTTTAA 58.425 39.130 0.00 0.00 0.00 1.52
2587 2955 5.000591 TCGTCCATGTGAGAATGCTTTAAA 58.999 37.500 0.00 0.00 0.00 1.52
2588 2956 5.088739 CGTCCATGTGAGAATGCTTTAAAC 58.911 41.667 0.00 0.00 0.00 2.01
2589 2957 5.402398 GTCCATGTGAGAATGCTTTAAACC 58.598 41.667 0.00 0.00 0.00 3.27
2590 2958 5.048083 GTCCATGTGAGAATGCTTTAAACCA 60.048 40.000 0.00 0.00 0.00 3.67
2591 2959 5.048083 TCCATGTGAGAATGCTTTAAACCAC 60.048 40.000 0.00 0.00 0.00 4.16
2592 2960 5.047802 CCATGTGAGAATGCTTTAAACCACT 60.048 40.000 0.00 0.00 0.00 4.00
2593 2961 5.437289 TGTGAGAATGCTTTAAACCACTG 57.563 39.130 0.00 0.00 0.00 3.66
2594 2962 4.229876 GTGAGAATGCTTTAAACCACTGC 58.770 43.478 0.00 0.00 0.00 4.40
2595 2963 3.255642 TGAGAATGCTTTAAACCACTGCC 59.744 43.478 0.00 0.00 0.00 4.85
2596 2964 3.500343 AGAATGCTTTAAACCACTGCCT 58.500 40.909 0.00 0.00 0.00 4.75
2603 2971 4.377021 CTTTAAACCACTGCCTTTTTCCC 58.623 43.478 0.00 0.00 0.00 3.97
2628 2996 7.308435 CCTTTCATGTGAGAATTGTTTAGTCC 58.692 38.462 0.00 0.00 0.00 3.85
2630 2998 7.439157 TTCATGTGAGAATTGTTTAGTCCTG 57.561 36.000 0.00 0.00 0.00 3.86
2632 3000 7.223584 TCATGTGAGAATTGTTTAGTCCTGAA 58.776 34.615 0.00 0.00 0.00 3.02
2634 3002 5.470098 TGTGAGAATTGTTTAGTCCTGAAGC 59.530 40.000 0.00 0.00 0.00 3.86
2649 3017 1.271054 TGAAGCTGTCTGAGGCTTTCC 60.271 52.381 15.64 7.67 46.91 3.13
2652 3020 0.246635 GCTGTCTGAGGCTTTCCGTA 59.753 55.000 0.00 0.00 37.47 4.02
2654 3022 2.100916 GCTGTCTGAGGCTTTCCGTATA 59.899 50.000 0.00 0.00 37.47 1.47
2655 3023 3.243907 GCTGTCTGAGGCTTTCCGTATAT 60.244 47.826 0.00 0.00 37.47 0.86
2667 3035 6.082338 GCTTTCCGTATATTGCATTCTGATG 58.918 40.000 0.00 0.00 36.32 3.07
2694 3072 3.578688 GCCATTCAAGTGTTGTTGGATC 58.421 45.455 12.55 0.00 37.27 3.36
2695 3073 3.005684 GCCATTCAAGTGTTGTTGGATCA 59.994 43.478 12.55 0.00 37.27 2.92
2696 3074 4.549458 CCATTCAAGTGTTGTTGGATCAC 58.451 43.478 0.00 0.00 37.27 3.06
2701 3079 3.558931 AGTGTTGTTGGATCACAGTGA 57.441 42.857 5.50 5.50 34.94 3.41
2796 3177 6.500589 CCAAAGGGAGAGATGAAAGGTATA 57.499 41.667 0.00 0.00 35.59 1.47
2802 3183 7.972301 AGGGAGAGATGAAAGGTATAAATCAG 58.028 38.462 0.00 0.00 0.00 2.90
2803 3184 7.570607 AGGGAGAGATGAAAGGTATAAATCAGT 59.429 37.037 0.00 0.00 0.00 3.41
2817 3200 9.832445 GGTATAAATCAGTTCTTGGTAGATTCA 57.168 33.333 0.00 0.00 0.00 2.57
2823 3206 9.918630 AATCAGTTCTTGGTAGATTCAATTTTG 57.081 29.630 0.00 0.00 0.00 2.44
2824 3207 7.370383 TCAGTTCTTGGTAGATTCAATTTTGC 58.630 34.615 0.00 0.00 0.00 3.68
2851 3241 4.496360 CATGTTGCATCAATTACAGGCAA 58.504 39.130 0.75 4.91 41.67 4.52
2855 3245 4.126208 TGCATCAATTACAGGCAATTGG 57.874 40.909 7.72 0.00 43.22 3.16
2860 3250 6.400568 CATCAATTACAGGCAATTGGAAGTT 58.599 36.000 7.72 0.00 43.22 2.66
2873 3263 7.550196 GGCAATTGGAAGTTACAATCATTGAAT 59.450 33.333 13.80 0.00 37.55 2.57
2879 3269 9.685276 TGGAAGTTACAATCATTGAATCTGTAT 57.315 29.630 3.79 0.00 0.00 2.29
2905 3295 2.855660 TGCTGTATGTGATGCAATGC 57.144 45.000 0.00 0.00 32.12 3.56
2907 3297 2.756207 TGCTGTATGTGATGCAATGCTT 59.244 40.909 6.82 0.00 32.12 3.91
2908 3298 3.181494 TGCTGTATGTGATGCAATGCTTC 60.181 43.478 13.37 13.37 34.04 3.86
2914 3304 2.681344 TGTGATGCAATGCTTCTAGCTG 59.319 45.455 19.51 0.00 42.97 4.24
2916 3306 3.564644 GTGATGCAATGCTTCTAGCTGAT 59.435 43.478 19.51 0.00 42.97 2.90
2932 3322 9.836864 TTCTAGCTGATTAAAGCAGATCAATAA 57.163 29.630 11.60 0.00 46.08 1.40
2944 3334 9.798994 AAAGCAGATCAATAAATTTAGCTTCAG 57.201 29.630 15.03 4.61 38.69 3.02
2945 3335 8.517062 AGCAGATCAATAAATTTAGCTTCAGT 57.483 30.769 3.94 0.00 0.00 3.41
2946 3336 9.618890 AGCAGATCAATAAATTTAGCTTCAGTA 57.381 29.630 3.94 0.00 0.00 2.74
2947 3337 9.875675 GCAGATCAATAAATTTAGCTTCAGTAG 57.124 33.333 3.94 0.00 0.00 2.57
2959 3349 7.553881 TTAGCTTCAGTAGTTATTTCCATGC 57.446 36.000 0.00 0.00 0.00 4.06
2960 3350 5.500234 AGCTTCAGTAGTTATTTCCATGCA 58.500 37.500 0.00 0.00 0.00 3.96
2961 3351 5.945784 AGCTTCAGTAGTTATTTCCATGCAA 59.054 36.000 0.00 0.00 0.00 4.08
2962 3352 6.030228 GCTTCAGTAGTTATTTCCATGCAAC 58.970 40.000 0.00 0.00 0.00 4.17
2963 3353 6.127897 GCTTCAGTAGTTATTTCCATGCAACT 60.128 38.462 0.00 0.00 35.50 3.16
2964 3354 7.575720 GCTTCAGTAGTTATTTCCATGCAACTT 60.576 37.037 0.00 0.00 33.47 2.66
2965 3355 7.377766 TCAGTAGTTATTTCCATGCAACTTC 57.622 36.000 0.00 0.00 33.47 3.01
2966 3356 7.168219 TCAGTAGTTATTTCCATGCAACTTCT 58.832 34.615 0.00 0.00 33.47 2.85
2967 3357 7.119699 TCAGTAGTTATTTCCATGCAACTTCTG 59.880 37.037 9.85 9.85 42.76 3.02
2968 3358 7.119699 CAGTAGTTATTTCCATGCAACTTCTGA 59.880 37.037 10.35 0.00 43.44 3.27
2969 3359 6.259550 AGTTATTTCCATGCAACTTCTGAC 57.740 37.500 0.00 0.00 0.00 3.51
2970 3360 6.006449 AGTTATTTCCATGCAACTTCTGACT 58.994 36.000 0.00 0.00 0.00 3.41
2984 3374 7.524532 GCAACTTCTGACTATATCATAGCTGGA 60.525 40.741 0.00 0.00 36.48 3.86
2985 3375 8.530311 CAACTTCTGACTATATCATAGCTGGAT 58.470 37.037 0.00 1.81 36.48 3.41
3010 3400 2.641305 AGCCTGACTGATTCAAGCATC 58.359 47.619 0.00 0.00 43.32 3.91
3012 3402 2.942752 GCCTGACTGATTCAAGCATCCA 60.943 50.000 0.00 0.00 40.89 3.41
3014 3404 3.952323 CCTGACTGATTCAAGCATCCATT 59.048 43.478 0.00 0.00 32.21 3.16
3015 3405 4.202020 CCTGACTGATTCAAGCATCCATTG 60.202 45.833 0.00 0.00 32.21 2.82
3016 3406 3.697542 TGACTGATTCAAGCATCCATTGG 59.302 43.478 0.00 0.00 0.00 3.16
3018 3408 4.091549 ACTGATTCAAGCATCCATTGGTT 58.908 39.130 1.86 0.00 46.71 3.67
3140 3530 3.494749 GGAGCAGCTAGATGATCAAAGCT 60.495 47.826 25.79 19.40 45.94 3.74
3226 3619 7.670979 TGGATTATGTAATGCTGCTGGATTATT 59.329 33.333 18.02 12.33 38.43 1.40
3236 3629 4.274459 GCTGCTGGATTATTGTCTGTTAGG 59.726 45.833 0.00 0.00 0.00 2.69
3264 3660 0.175302 TTTGCACTGTGGTTTGGCTG 59.825 50.000 10.21 0.00 0.00 4.85
3267 3663 1.172180 GCACTGTGGTTTGGCTGCTA 61.172 55.000 10.21 0.00 0.00 3.49
3275 3671 3.005791 GTGGTTTGGCTGCTAAGATTTGT 59.994 43.478 0.00 0.00 0.00 2.83
3277 3673 4.237724 GGTTTGGCTGCTAAGATTTGTTC 58.762 43.478 0.00 0.00 0.00 3.18
3323 3722 5.977635 TGATCGGATTTATCTCTGTTGTGT 58.022 37.500 0.00 0.00 0.00 3.72
3341 3740 5.545063 TGTGTCAAGTATTCACCTGAGAA 57.455 39.130 0.00 0.00 0.00 2.87
3352 3751 1.345741 CACCTGAGAAGTCTGGCTTGA 59.654 52.381 0.00 0.00 43.97 3.02
3394 3796 3.482156 AGTGTGAGCTTGTGATGAACT 57.518 42.857 0.00 0.00 0.00 3.01
3400 3802 0.110056 GCTTGTGATGAACTGGTGCG 60.110 55.000 0.00 0.00 0.00 5.34
3496 4120 2.157738 ACTTGCAGTTCTGGAGAATGC 58.842 47.619 12.86 12.86 38.18 3.56
3514 4153 6.555315 AGAATGCTTGGTCGAATAATTTGAC 58.445 36.000 0.00 0.00 42.25 3.18
3518 4157 5.813157 TGCTTGGTCGAATAATTTGACGATA 59.187 36.000 0.00 0.00 43.60 2.92
3538 4178 6.093771 ACGATATTTGTTATTTTACCGTGGCA 59.906 34.615 0.00 0.00 0.00 4.92
3553 4193 2.811431 CGTGGCATGAGGAAACAAGTTA 59.189 45.455 0.00 0.00 0.00 2.24
3566 4206 5.977129 GGAAACAAGTTAGTTGGTGAATGTG 59.023 40.000 4.72 0.00 40.90 3.21
3567 4207 6.183360 GGAAACAAGTTAGTTGGTGAATGTGA 60.183 38.462 4.72 0.00 40.90 3.58
3579 4219 0.238289 GAATGTGACAAGGTGTGCCG 59.762 55.000 0.00 0.00 40.50 5.69
3580 4220 1.795170 AATGTGACAAGGTGTGCCGC 61.795 55.000 0.00 0.00 40.50 6.53
3595 4235 1.569493 CCGCCTTGACAACTGTTCG 59.431 57.895 0.00 0.00 0.00 3.95
3612 4252 6.791303 ACTGTTCGAAATGCAGAAACTAAAA 58.209 32.000 18.11 0.00 34.60 1.52
3613 4253 7.254852 ACTGTTCGAAATGCAGAAACTAAAAA 58.745 30.769 18.11 0.00 34.60 1.94
3669 4309 1.383799 TGGGAGCCCAAGAACATGG 59.616 57.895 5.60 0.00 44.12 3.66
3671 4311 0.681243 GGGAGCCCAAGAACATGGAC 60.681 60.000 0.00 0.00 43.54 4.02
3674 4314 1.002624 GCCCAAGAACATGGACCGA 60.003 57.895 0.00 0.00 43.54 4.69
3675 4315 0.394352 GCCCAAGAACATGGACCGAT 60.394 55.000 0.00 0.00 43.54 4.18
3730 4387 0.459489 TGAAGGCACAAACAGCAACC 59.541 50.000 0.00 0.00 0.00 3.77
3742 4399 1.816835 ACAGCAACCATGAGAGCATTG 59.183 47.619 0.00 0.00 30.68 2.82
3743 4400 1.816835 CAGCAACCATGAGAGCATTGT 59.183 47.619 0.00 0.00 32.26 2.71
3744 4401 3.011818 CAGCAACCATGAGAGCATTGTA 58.988 45.455 0.00 0.00 30.87 2.41
3746 4403 4.081406 AGCAACCATGAGAGCATTGTAAA 58.919 39.130 0.00 0.00 30.87 2.01
3750 4407 6.320171 CAACCATGAGAGCATTGTAAAAGAG 58.680 40.000 0.00 0.00 30.87 2.85
3753 4410 6.888632 ACCATGAGAGCATTGTAAAAGAGAAT 59.111 34.615 0.00 0.00 29.42 2.40
3754 4411 8.049117 ACCATGAGAGCATTGTAAAAGAGAATA 58.951 33.333 0.00 0.00 29.42 1.75
3758 4417 7.607607 TGAGAGCATTGTAAAAGAGAATAAGCA 59.392 33.333 0.00 0.00 0.00 3.91
3779 4438 0.883833 CGAGCAGCCCATTTTGACTT 59.116 50.000 0.00 0.00 0.00 3.01
3783 4442 2.298163 AGCAGCCCATTTTGACTTCAAG 59.702 45.455 0.00 0.00 37.15 3.02
3808 4470 7.990886 AGTTTATCTAAGGATGAACGGCAAATA 59.009 33.333 7.60 0.00 33.71 1.40
3809 4471 8.617809 GTTTATCTAAGGATGAACGGCAAATAA 58.382 33.333 0.00 0.00 33.71 1.40
3810 4472 8.740123 TTATCTAAGGATGAACGGCAAATAAA 57.260 30.769 0.00 0.00 33.71 1.40
3811 4473 6.677781 TCTAAGGATGAACGGCAAATAAAG 57.322 37.500 0.00 0.00 0.00 1.85
3812 4474 6.411376 TCTAAGGATGAACGGCAAATAAAGA 58.589 36.000 0.00 0.00 0.00 2.52
3813 4475 5.975693 AAGGATGAACGGCAAATAAAGAA 57.024 34.783 0.00 0.00 0.00 2.52
3814 4476 5.567138 AGGATGAACGGCAAATAAAGAAG 57.433 39.130 0.00 0.00 0.00 2.85
3815 4477 4.105486 GGATGAACGGCAAATAAAGAAGC 58.895 43.478 0.00 0.00 0.00 3.86
3840 4502 5.331876 AGAAGCAGATAGTTTAGCGAGTT 57.668 39.130 0.00 0.00 0.00 3.01
3856 4519 0.107410 AGTTGGCACGTCTTGAACCA 60.107 50.000 0.00 0.00 0.00 3.67
3866 4529 4.082408 CACGTCTTGAACCAGGTACATCTA 60.082 45.833 0.00 0.00 0.00 1.98
3878 4541 7.287810 ACCAGGTACATCTAAACTCACTTTTT 58.712 34.615 0.00 0.00 0.00 1.94
3967 4641 2.076100 CCGCTGCACAAAGTTCTATGA 58.924 47.619 0.00 0.00 0.00 2.15
4058 4732 3.510719 TGTTTTGTCTTTCTTGCACAGC 58.489 40.909 0.00 0.00 0.00 4.40
4089 4764 8.770438 AAATGTTGCTTTTCTGTGAAACTTTA 57.230 26.923 0.00 0.00 38.04 1.85
4090 4765 7.992180 ATGTTGCTTTTCTGTGAAACTTTAG 57.008 32.000 0.00 0.00 38.04 1.85
4091 4766 7.151999 TGTTGCTTTTCTGTGAAACTTTAGA 57.848 32.000 0.00 0.00 38.04 2.10
4092 4767 7.598278 TGTTGCTTTTCTGTGAAACTTTAGAA 58.402 30.769 0.00 0.00 38.04 2.10
4093 4768 8.250332 TGTTGCTTTTCTGTGAAACTTTAGAAT 58.750 29.630 0.00 0.00 38.04 2.40
4094 4769 9.730420 GTTGCTTTTCTGTGAAACTTTAGAATA 57.270 29.630 0.00 0.00 38.04 1.75
4096 4771 9.897744 TGCTTTTCTGTGAAACTTTAGAATATG 57.102 29.630 0.00 0.00 38.04 1.78
4097 4772 9.346725 GCTTTTCTGTGAAACTTTAGAATATGG 57.653 33.333 0.00 0.00 38.04 2.74
4100 4775 9.567776 TTTCTGTGAAACTTTAGAATATGGACA 57.432 29.630 0.00 0.00 38.04 4.02
4101 4776 9.739276 TTCTGTGAAACTTTAGAATATGGACAT 57.261 29.630 0.00 0.00 38.04 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.550524 CGTGGGGATGGATATCGATGT 59.449 52.381 8.54 0.00 33.98 3.06
9 10 1.825474 GTCGTGGGGATGGATATCGAT 59.175 52.381 2.16 2.16 33.98 3.59
15 16 3.861797 GCGGTCGTGGGGATGGAT 61.862 66.667 0.00 0.00 0.00 3.41
33 34 0.888619 ACATCCGTGCTCTTCTCGAA 59.111 50.000 0.00 0.00 33.89 3.71
66 67 3.068024 AGCATTTTCTGAAAGCCGAAACA 59.932 39.130 9.84 0.00 0.00 2.83
148 149 1.291877 GATGTTCTGCTTCGTGCCGT 61.292 55.000 1.30 0.00 42.00 5.68
202 203 0.608035 GCTTCCCATGGACCGTTTCA 60.608 55.000 15.22 0.00 0.00 2.69
275 276 0.395311 AGTACGAGGATTCCGCCAGA 60.395 55.000 0.42 0.00 0.00 3.86
278 279 0.248949 GACAGTACGAGGATTCCGCC 60.249 60.000 0.42 0.00 0.00 6.13
284 285 0.255318 AGTCCGGACAGTACGAGGAT 59.745 55.000 35.00 8.65 33.15 3.24
296 297 2.915659 AACCTGCGTGAGTCCGGA 60.916 61.111 0.00 0.00 0.00 5.14
302 303 0.318441 TCTTCAGGAACCTGCGTGAG 59.682 55.000 15.20 10.26 43.31 3.51
382 384 0.030504 CGCAGGATTTGTGTGTTGCA 59.969 50.000 0.00 0.00 32.55 4.08
408 410 2.955881 GCAGTCCCAGCCCGTACTT 61.956 63.158 0.00 0.00 0.00 2.24
429 431 2.778679 GTCTTCGATGTGCCGCAC 59.221 61.111 16.93 16.93 34.56 5.34
463 468 4.785453 CTTCCTGCCCCTCCACGC 62.785 72.222 0.00 0.00 0.00 5.34
468 491 4.168291 CGCCTCTTCCTGCCCCTC 62.168 72.222 0.00 0.00 0.00 4.30
475 498 0.537653 GCTAGGTTTCGCCTCTTCCT 59.462 55.000 0.00 0.00 46.96 3.36
532 571 1.201647 CGCACTTCTTCGAGGAGGTAA 59.798 52.381 11.98 0.00 0.00 2.85
671 710 2.785425 GGAAATGGCGGCCATGGAC 61.785 63.158 33.56 24.68 44.40 4.02
695 740 0.323908 CGAGGAAGGGGTCTGAGACT 60.324 60.000 12.92 0.00 32.47 3.24
751 797 2.122636 TTTGGGTTTGGGGGCTGG 60.123 61.111 0.00 0.00 0.00 4.85
753 799 2.526624 GCTTTGGGTTTGGGGGCT 60.527 61.111 0.00 0.00 0.00 5.19
792 838 1.596603 ACGGGGTGGTTTACGAAAAG 58.403 50.000 0.00 0.00 0.00 2.27
798 844 2.502947 AGGATAGAACGGGGTGGTTTAC 59.497 50.000 0.00 0.00 0.00 2.01
800 846 1.665137 AGGATAGAACGGGGTGGTTT 58.335 50.000 0.00 0.00 0.00 3.27
812 858 4.729227 TGACACGCAAATGTAGGATAGA 57.271 40.909 0.00 0.00 31.24 1.98
826 872 2.247311 CTTTGTAAGCCATGACACGC 57.753 50.000 0.00 0.00 0.00 5.34
1079 1135 2.223066 CCAGAACTACGCTACGAGACTG 60.223 54.545 0.00 0.00 0.00 3.51
1094 1150 2.589492 CGCGCGATCCATCCAGAAC 61.589 63.158 28.94 0.00 0.00 3.01
1096 1152 4.284860 CCGCGCGATCCATCCAGA 62.285 66.667 34.63 0.00 0.00 3.86
1146 1202 6.639686 CGACTACTAGTAGCAAGAAAACAACA 59.360 38.462 26.54 0.00 36.66 3.33
1147 1203 6.399775 GCGACTACTAGTAGCAAGAAAACAAC 60.400 42.308 26.54 3.24 44.64 3.32
1148 1204 5.632347 GCGACTACTAGTAGCAAGAAAACAA 59.368 40.000 26.54 0.00 44.64 2.83
1230 1526 8.123639 TCCTAAACATCCTCTACAGCATATAC 57.876 38.462 0.00 0.00 0.00 1.47
1231 1527 8.721133 TTCCTAAACATCCTCTACAGCATATA 57.279 34.615 0.00 0.00 0.00 0.86
1300 1597 2.033602 AAGCAACTACACGGGCCC 59.966 61.111 13.57 13.57 0.00 5.80
1353 1653 3.576550 GGCCCTAAAGTGGATTTGAACAA 59.423 43.478 0.00 0.00 32.01 2.83
1358 1658 4.855340 TCTAAGGCCCTAAAGTGGATTTG 58.145 43.478 0.00 0.00 32.01 2.32
1385 1685 3.932710 TCGCAGATATGTTCACTTCCAAC 59.067 43.478 0.00 0.00 0.00 3.77
1408 1717 3.309954 GGCAACTTACAAGGATTAGAGCG 59.690 47.826 0.00 0.00 0.00 5.03
1499 1809 8.364142 TCAAACAAAGAACTAATTTACCCCATG 58.636 33.333 0.00 0.00 0.00 3.66
1531 1841 9.209175 ACACTGAATAGAACATTTAACAGACTC 57.791 33.333 0.00 0.00 0.00 3.36
1549 1859 6.183361 TGCATAACAGCTCCTATACACTGAAT 60.183 38.462 0.00 0.00 34.25 2.57
1624 1941 0.038166 TGTCCAAGGGTTCATCCAGC 59.962 55.000 0.00 0.00 38.11 4.85
1639 1964 0.801251 GCAGAGACATGCAACTGTCC 59.199 55.000 15.24 8.32 45.41 4.02
1674 2000 9.410556 ACACAAGCATCTGATAAAATTTACAAC 57.589 29.630 0.00 0.00 0.00 3.32
1702 2028 4.592485 ATCTACTTACCGAGCCAAGATG 57.408 45.455 0.00 0.00 0.00 2.90
1726 2052 6.471198 CGTTTCTTCAAAGTTAAACAAGGACC 59.529 38.462 0.00 0.00 32.61 4.46
1727 2053 7.245604 TCGTTTCTTCAAAGTTAAACAAGGAC 58.754 34.615 0.00 0.00 32.61 3.85
1752 2080 9.196552 CACGTTATGATTACACAGTATCATGAT 57.803 33.333 13.81 13.81 40.65 2.45
1761 2089 5.389411 CCACACACACGTTATGATTACACAG 60.389 44.000 3.61 0.00 0.00 3.66
1776 2104 1.283793 GCATGACAGCCACACACAC 59.716 57.895 0.00 0.00 0.00 3.82
1818 2156 9.770097 ACAAAAGGATCACATATATCTACAGTG 57.230 33.333 0.00 0.00 0.00 3.66
1897 2238 0.759959 TCCGGAACTTGTTACCAGCA 59.240 50.000 0.00 0.00 0.00 4.41
2173 2514 4.096984 CCCATTCACAATAAGAACTCAGCC 59.903 45.833 0.00 0.00 0.00 4.85
2177 2518 7.396540 AATGACCCATTCACAATAAGAACTC 57.603 36.000 0.00 0.00 36.92 3.01
2192 2533 2.573462 ACACTAGCACAGAATGACCCAT 59.427 45.455 0.00 0.00 39.69 4.00
2195 2537 4.177026 CAGTACACTAGCACAGAATGACC 58.823 47.826 0.00 0.00 39.69 4.02
2296 2638 9.345517 CACAGAAATTCCATACAACATGTAAAG 57.654 33.333 0.00 0.00 36.31 1.85
2299 2641 8.628630 TTCACAGAAATTCCATACAACATGTA 57.371 30.769 0.00 0.00 37.24 2.29
2316 2661 4.887071 ACAGGCAAGTGTAATTTCACAGAA 59.113 37.500 16.34 0.00 40.37 3.02
2321 2666 5.590530 AACAACAGGCAAGTGTAATTTCA 57.409 34.783 0.00 0.00 0.00 2.69
2322 2667 6.735130 AGTAACAACAGGCAAGTGTAATTTC 58.265 36.000 0.00 0.00 0.00 2.17
2336 2681 3.273919 GCTTCCAGCAAGTAACAACAG 57.726 47.619 0.00 0.00 41.89 3.16
2349 2694 8.712285 ACATGATGAATTAAATTTGCTTCCAG 57.288 30.769 0.00 0.00 0.00 3.86
2419 2781 1.496060 TGACCACAGTGAAGAGGTGT 58.504 50.000 0.62 0.00 32.38 4.16
2421 2783 3.117888 ACAAATGACCACAGTGAAGAGGT 60.118 43.478 0.62 0.00 35.06 3.85
2424 2786 3.876914 GTGACAAATGACCACAGTGAAGA 59.123 43.478 0.62 0.00 0.00 2.87
2425 2787 3.627123 TGTGACAAATGACCACAGTGAAG 59.373 43.478 0.62 0.00 36.07 3.02
2443 2805 3.729862 TTTGCATGTGCTTCATTGTGA 57.270 38.095 6.55 0.00 42.66 3.58
2456 2818 2.997986 GTTCTTCTGGCCAATTTGCATG 59.002 45.455 7.01 0.00 0.00 4.06
2493 2861 7.147811 TGCCAAGGGGTAATTACATAATTCAAC 60.148 37.037 17.16 0.00 34.61 3.18
2497 2865 6.198639 TGTGCCAAGGGGTAATTACATAATT 58.801 36.000 17.16 3.81 35.89 1.40
2501 2869 3.748645 TGTGCCAAGGGGTAATTACAT 57.251 42.857 17.16 0.03 36.17 2.29
2504 2872 3.748645 ACATGTGCCAAGGGGTAATTA 57.251 42.857 0.00 0.00 36.17 1.40
2505 2873 2.621556 ACATGTGCCAAGGGGTAATT 57.378 45.000 0.00 0.00 36.17 1.40
2507 2875 3.748645 ATAACATGTGCCAAGGGGTAA 57.251 42.857 0.00 0.00 36.17 2.85
2508 2876 4.787551 CTTATAACATGTGCCAAGGGGTA 58.212 43.478 0.00 0.00 36.17 3.69
2509 2877 3.631250 CTTATAACATGTGCCAAGGGGT 58.369 45.455 0.00 0.00 36.17 4.95
2513 2881 5.297527 TGAGATGCTTATAACATGTGCCAAG 59.702 40.000 0.00 4.20 0.00 3.61
2514 2882 5.192176 TGAGATGCTTATAACATGTGCCAA 58.808 37.500 0.00 0.00 0.00 4.52
2515 2883 4.779696 TGAGATGCTTATAACATGTGCCA 58.220 39.130 0.00 0.00 0.00 4.92
2516 2884 4.320057 GCTGAGATGCTTATAACATGTGCC 60.320 45.833 0.00 0.00 0.00 5.01
2517 2885 4.514441 AGCTGAGATGCTTATAACATGTGC 59.486 41.667 0.00 0.00 40.93 4.57
2520 2888 8.543862 TTATCAGCTGAGATGCTTATAACATG 57.456 34.615 22.96 0.00 41.98 3.21
2521 2889 8.997323 GTTTATCAGCTGAGATGCTTATAACAT 58.003 33.333 22.96 2.16 41.98 2.71
2522 2890 8.206867 AGTTTATCAGCTGAGATGCTTATAACA 58.793 33.333 22.96 0.00 41.98 2.41
2523 2891 8.494347 CAGTTTATCAGCTGAGATGCTTATAAC 58.506 37.037 22.96 15.69 41.98 1.89
2524 2892 8.206867 ACAGTTTATCAGCTGAGATGCTTATAA 58.793 33.333 22.96 10.04 41.98 0.98
2526 2894 6.590068 ACAGTTTATCAGCTGAGATGCTTAT 58.410 36.000 22.96 4.95 41.98 1.73
2527 2895 5.982356 ACAGTTTATCAGCTGAGATGCTTA 58.018 37.500 22.96 5.43 41.98 3.09
2528 2896 4.841422 ACAGTTTATCAGCTGAGATGCTT 58.159 39.130 22.96 6.52 41.98 3.91
2529 2897 4.484537 ACAGTTTATCAGCTGAGATGCT 57.515 40.909 22.96 14.83 45.18 3.79
2530 2898 4.633126 TCAACAGTTTATCAGCTGAGATGC 59.367 41.667 22.96 12.83 36.62 3.91
2531 2899 5.640783 TGTCAACAGTTTATCAGCTGAGATG 59.359 40.000 22.96 15.01 36.62 2.90
2532 2900 5.798132 TGTCAACAGTTTATCAGCTGAGAT 58.202 37.500 22.96 8.91 36.62 2.75
2533 2901 5.213891 TGTCAACAGTTTATCAGCTGAGA 57.786 39.130 22.96 15.68 36.62 3.27
2534 2902 5.873712 AGATGTCAACAGTTTATCAGCTGAG 59.126 40.000 22.96 9.67 36.62 3.35
2535 2903 5.798132 AGATGTCAACAGTTTATCAGCTGA 58.202 37.500 20.79 20.79 36.62 4.26
2536 2904 6.492007 AAGATGTCAACAGTTTATCAGCTG 57.508 37.500 7.63 7.63 38.58 4.24
2537 2905 7.446625 AGAAAAGATGTCAACAGTTTATCAGCT 59.553 33.333 5.28 0.00 0.00 4.24
2538 2906 7.588512 AGAAAAGATGTCAACAGTTTATCAGC 58.411 34.615 5.28 0.00 0.00 4.26
2539 2907 9.604626 GAAGAAAAGATGTCAACAGTTTATCAG 57.395 33.333 5.28 0.00 0.00 2.90
2540 2908 8.282592 CGAAGAAAAGATGTCAACAGTTTATCA 58.717 33.333 5.28 0.00 0.00 2.15
2541 2909 8.283291 ACGAAGAAAAGATGTCAACAGTTTATC 58.717 33.333 0.00 0.00 0.00 1.75
2542 2910 8.154649 ACGAAGAAAAGATGTCAACAGTTTAT 57.845 30.769 0.00 0.00 0.00 1.40
2543 2911 7.254658 GGACGAAGAAAAGATGTCAACAGTTTA 60.255 37.037 0.00 0.00 0.00 2.01
2544 2912 6.436843 ACGAAGAAAAGATGTCAACAGTTT 57.563 33.333 0.00 0.00 0.00 2.66
2545 2913 5.007724 GGACGAAGAAAAGATGTCAACAGTT 59.992 40.000 0.00 0.00 0.00 3.16
2546 2914 4.511826 GGACGAAGAAAAGATGTCAACAGT 59.488 41.667 0.00 0.00 0.00 3.55
2547 2915 4.511454 TGGACGAAGAAAAGATGTCAACAG 59.489 41.667 0.00 0.00 0.00 3.16
2548 2916 4.447290 TGGACGAAGAAAAGATGTCAACA 58.553 39.130 0.00 0.00 0.00 3.33
2549 2917 5.049405 ACATGGACGAAGAAAAGATGTCAAC 60.049 40.000 0.00 0.00 0.00 3.18
2550 2918 5.049474 CACATGGACGAAGAAAAGATGTCAA 60.049 40.000 0.00 0.00 0.00 3.18
2551 2919 4.452114 CACATGGACGAAGAAAAGATGTCA 59.548 41.667 0.00 0.00 0.00 3.58
2552 2920 4.690748 TCACATGGACGAAGAAAAGATGTC 59.309 41.667 0.00 0.00 0.00 3.06
2553 2921 4.641396 TCACATGGACGAAGAAAAGATGT 58.359 39.130 0.00 0.00 0.00 3.06
2554 2922 4.931601 TCTCACATGGACGAAGAAAAGATG 59.068 41.667 0.00 0.00 0.00 2.90
2555 2923 5.152623 TCTCACATGGACGAAGAAAAGAT 57.847 39.130 0.00 0.00 0.00 2.40
2556 2924 4.600692 TCTCACATGGACGAAGAAAAGA 57.399 40.909 0.00 0.00 0.00 2.52
2557 2925 5.625251 CATTCTCACATGGACGAAGAAAAG 58.375 41.667 0.00 0.00 0.00 2.27
2558 2926 4.083324 GCATTCTCACATGGACGAAGAAAA 60.083 41.667 0.00 0.00 0.00 2.29
2559 2927 3.436704 GCATTCTCACATGGACGAAGAAA 59.563 43.478 0.00 0.00 0.00 2.52
2560 2928 3.002791 GCATTCTCACATGGACGAAGAA 58.997 45.455 0.00 0.00 0.00 2.52
2561 2929 2.234661 AGCATTCTCACATGGACGAAGA 59.765 45.455 0.00 0.00 0.00 2.87
2562 2930 2.625737 AGCATTCTCACATGGACGAAG 58.374 47.619 0.00 0.00 0.00 3.79
2563 2931 2.768253 AGCATTCTCACATGGACGAA 57.232 45.000 0.00 0.00 0.00 3.85
2564 2932 2.768253 AAGCATTCTCACATGGACGA 57.232 45.000 0.00 0.00 0.00 4.20
2565 2933 4.944962 TTAAAGCATTCTCACATGGACG 57.055 40.909 0.00 0.00 0.00 4.79
2566 2934 5.048083 TGGTTTAAAGCATTCTCACATGGAC 60.048 40.000 15.83 0.00 0.00 4.02
2567 2935 5.048083 GTGGTTTAAAGCATTCTCACATGGA 60.048 40.000 21.88 0.00 38.81 3.41
2568 2936 5.047802 AGTGGTTTAAAGCATTCTCACATGG 60.048 40.000 21.88 0.00 38.81 3.66
2569 2937 5.860182 CAGTGGTTTAAAGCATTCTCACATG 59.140 40.000 21.88 8.31 38.81 3.21
2570 2938 5.565439 GCAGTGGTTTAAAGCATTCTCACAT 60.565 40.000 21.88 0.73 38.81 3.21
2571 2939 4.261572 GCAGTGGTTTAAAGCATTCTCACA 60.262 41.667 21.88 0.00 38.81 3.58
2572 2940 4.229876 GCAGTGGTTTAAAGCATTCTCAC 58.770 43.478 21.88 8.99 38.81 3.51
2573 2941 3.255642 GGCAGTGGTTTAAAGCATTCTCA 59.744 43.478 21.88 0.00 38.81 3.27
2574 2942 3.507622 AGGCAGTGGTTTAAAGCATTCTC 59.492 43.478 21.88 10.00 38.81 2.87
2575 2943 3.500343 AGGCAGTGGTTTAAAGCATTCT 58.500 40.909 21.88 13.00 38.81 2.40
2576 2944 3.942130 AGGCAGTGGTTTAAAGCATTC 57.058 42.857 21.88 11.01 38.81 2.67
2577 2945 4.687901 AAAGGCAGTGGTTTAAAGCATT 57.312 36.364 21.88 15.65 38.81 3.56
2578 2946 4.687901 AAAAGGCAGTGGTTTAAAGCAT 57.312 36.364 21.88 9.38 38.81 3.79
2579 2947 4.438148 GAAAAAGGCAGTGGTTTAAAGCA 58.562 39.130 15.83 15.83 0.00 3.91
2580 2948 3.807622 GGAAAAAGGCAGTGGTTTAAAGC 59.192 43.478 10.47 10.47 0.00 3.51
2581 2949 4.377021 GGGAAAAAGGCAGTGGTTTAAAG 58.623 43.478 0.00 0.00 0.00 1.85
2582 2950 3.134985 GGGGAAAAAGGCAGTGGTTTAAA 59.865 43.478 0.00 0.00 0.00 1.52
2583 2951 2.701423 GGGGAAAAAGGCAGTGGTTTAA 59.299 45.455 0.00 0.00 0.00 1.52
2584 2952 2.090999 AGGGGAAAAAGGCAGTGGTTTA 60.091 45.455 0.00 0.00 0.00 2.01
2585 2953 1.128200 GGGGAAAAAGGCAGTGGTTT 58.872 50.000 0.00 0.00 0.00 3.27
2586 2954 0.264657 AGGGGAAAAAGGCAGTGGTT 59.735 50.000 0.00 0.00 0.00 3.67
2587 2955 0.264657 AAGGGGAAAAAGGCAGTGGT 59.735 50.000 0.00 0.00 0.00 4.16
2588 2956 1.344438 GAAAGGGGAAAAAGGCAGTGG 59.656 52.381 0.00 0.00 0.00 4.00
2589 2957 2.038659 TGAAAGGGGAAAAAGGCAGTG 58.961 47.619 0.00 0.00 0.00 3.66
2590 2958 2.470057 TGAAAGGGGAAAAAGGCAGT 57.530 45.000 0.00 0.00 0.00 4.40
2591 2959 2.634453 ACATGAAAGGGGAAAAAGGCAG 59.366 45.455 0.00 0.00 0.00 4.85
2592 2960 2.368221 CACATGAAAGGGGAAAAAGGCA 59.632 45.455 0.00 0.00 0.00 4.75
2593 2961 2.632512 TCACATGAAAGGGGAAAAAGGC 59.367 45.455 0.00 0.00 0.00 4.35
2594 2962 4.151883 TCTCACATGAAAGGGGAAAAAGG 58.848 43.478 0.00 0.00 0.00 3.11
2595 2963 5.789643 TTCTCACATGAAAGGGGAAAAAG 57.210 39.130 0.00 0.00 0.00 2.27
2596 2964 6.099557 ACAATTCTCACATGAAAGGGGAAAAA 59.900 34.615 0.00 0.00 0.00 1.94
2603 2971 7.175641 AGGACTAAACAATTCTCACATGAAAGG 59.824 37.037 0.00 0.00 0.00 3.11
2628 2996 3.931768 AAGCCTCAGACAGCTTCAG 57.068 52.632 0.00 0.00 46.11 3.02
2632 3000 1.294780 CGGAAAGCCTCAGACAGCT 59.705 57.895 0.00 0.00 42.40 4.24
2634 3002 2.969628 ATACGGAAAGCCTCAGACAG 57.030 50.000 0.00 0.00 0.00 3.51
2667 3035 2.137523 CAACACTTGAATGGCCAAAGC 58.862 47.619 10.96 2.10 38.76 3.51
2668 3036 3.457610 ACAACACTTGAATGGCCAAAG 57.542 42.857 10.96 12.33 0.00 2.77
2669 3037 3.529533 CAACAACACTTGAATGGCCAAA 58.470 40.909 10.96 0.00 0.00 3.28
2671 3039 1.411977 CCAACAACACTTGAATGGCCA 59.588 47.619 8.56 8.56 35.57 5.36
2672 3040 1.686052 TCCAACAACACTTGAATGGCC 59.314 47.619 0.00 0.00 39.39 5.36
2673 3041 3.005684 TGATCCAACAACACTTGAATGGC 59.994 43.478 0.00 0.00 39.39 4.40
2676 3044 4.889409 ACTGTGATCCAACAACACTTGAAT 59.111 37.500 0.00 0.00 35.83 2.57
2694 3072 7.488792 TGAATTTTGACAAAATCAGTCACTGTG 59.511 33.333 22.98 0.17 44.95 3.66
2695 3073 7.546358 TGAATTTTGACAAAATCAGTCACTGT 58.454 30.769 22.98 7.36 44.95 3.55
2696 3074 7.990541 TGAATTTTGACAAAATCAGTCACTG 57.009 32.000 22.98 0.00 44.95 3.66
2802 3183 7.540055 CAGAGCAAAATTGAATCTACCAAGAAC 59.460 37.037 0.00 0.00 34.73 3.01
2803 3184 7.596494 CAGAGCAAAATTGAATCTACCAAGAA 58.404 34.615 0.00 0.00 34.73 2.52
2815 3198 3.061322 GCAACATGCAGAGCAAAATTGA 58.939 40.909 13.79 0.00 43.62 2.57
2816 3199 3.449322 GCAACATGCAGAGCAAAATTG 57.551 42.857 0.00 2.76 43.62 2.32
2842 3225 6.491745 TGATTGTAACTTCCAATTGCCTGTAA 59.508 34.615 0.00 0.00 32.84 2.41
2851 3241 9.028284 ACAGATTCAATGATTGTAACTTCCAAT 57.972 29.630 4.93 0.00 35.30 3.16
2886 3276 2.371306 AGCATTGCATCACATACAGCA 58.629 42.857 11.91 0.00 34.79 4.41
2892 3282 3.315470 CAGCTAGAAGCATTGCATCACAT 59.685 43.478 15.51 0.00 45.56 3.21
2896 3286 4.832590 AATCAGCTAGAAGCATTGCATC 57.167 40.909 11.91 8.70 45.56 3.91
2897 3287 6.704289 TTTAATCAGCTAGAAGCATTGCAT 57.296 33.333 11.91 0.00 45.56 3.96
2899 3289 4.974888 GCTTTAATCAGCTAGAAGCATTGC 59.025 41.667 0.00 0.00 45.56 3.56
2905 3295 7.783090 TTGATCTGCTTTAATCAGCTAGAAG 57.217 36.000 0.00 0.00 40.79 2.85
2907 3297 9.836864 TTTATTGATCTGCTTTAATCAGCTAGA 57.163 29.630 0.00 3.23 40.79 2.43
2934 3324 7.609918 TGCATGGAAATAACTACTGAAGCTAAA 59.390 33.333 0.00 0.00 0.00 1.85
2935 3325 7.109501 TGCATGGAAATAACTACTGAAGCTAA 58.890 34.615 0.00 0.00 0.00 3.09
2936 3326 6.649155 TGCATGGAAATAACTACTGAAGCTA 58.351 36.000 0.00 0.00 0.00 3.32
2937 3327 5.500234 TGCATGGAAATAACTACTGAAGCT 58.500 37.500 0.00 0.00 0.00 3.74
2938 3328 5.818136 TGCATGGAAATAACTACTGAAGC 57.182 39.130 0.00 0.00 0.00 3.86
2939 3329 7.383102 AGTTGCATGGAAATAACTACTGAAG 57.617 36.000 0.00 0.00 32.05 3.02
2940 3330 7.665559 AGAAGTTGCATGGAAATAACTACTGAA 59.334 33.333 0.00 0.00 33.37 3.02
2941 3331 7.119699 CAGAAGTTGCATGGAAATAACTACTGA 59.880 37.037 0.00 0.00 33.37 3.41
2942 3332 7.119699 TCAGAAGTTGCATGGAAATAACTACTG 59.880 37.037 0.00 6.66 33.37 2.74
2943 3333 7.119846 GTCAGAAGTTGCATGGAAATAACTACT 59.880 37.037 0.00 0.00 33.37 2.57
2944 3334 7.119846 AGTCAGAAGTTGCATGGAAATAACTAC 59.880 37.037 0.00 0.00 33.37 2.73
2945 3335 7.168219 AGTCAGAAGTTGCATGGAAATAACTA 58.832 34.615 0.00 0.00 33.37 2.24
2946 3336 6.006449 AGTCAGAAGTTGCATGGAAATAACT 58.994 36.000 0.00 1.29 35.06 2.24
2947 3337 6.259550 AGTCAGAAGTTGCATGGAAATAAC 57.740 37.500 0.00 0.00 0.00 1.89
2950 3340 7.994911 TGATATAGTCAGAAGTTGCATGGAAAT 59.005 33.333 0.00 0.00 31.80 2.17
2954 3344 7.064371 GCTATGATATAGTCAGAAGTTGCATGG 59.936 40.741 0.00 0.00 40.92 3.66
2956 3346 7.818446 CAGCTATGATATAGTCAGAAGTTGCAT 59.182 37.037 0.00 0.00 40.92 3.96
2957 3347 7.150640 CAGCTATGATATAGTCAGAAGTTGCA 58.849 38.462 0.00 0.00 40.92 4.08
2958 3348 6.589523 CCAGCTATGATATAGTCAGAAGTTGC 59.410 42.308 0.00 0.00 40.92 4.17
2959 3349 7.890515 TCCAGCTATGATATAGTCAGAAGTTG 58.109 38.462 0.00 0.00 40.92 3.16
2960 3350 8.530311 CATCCAGCTATGATATAGTCAGAAGTT 58.470 37.037 0.00 0.00 40.92 2.66
2961 3351 7.892771 TCATCCAGCTATGATATAGTCAGAAGT 59.107 37.037 0.00 0.00 40.92 3.01
2962 3352 8.291191 TCATCCAGCTATGATATAGTCAGAAG 57.709 38.462 0.00 0.00 40.92 2.85
2963 3353 8.526978 GTTCATCCAGCTATGATATAGTCAGAA 58.473 37.037 0.02 0.00 40.92 3.02
2964 3354 7.671398 TGTTCATCCAGCTATGATATAGTCAGA 59.329 37.037 0.02 0.00 40.92 3.27
2965 3355 7.834803 TGTTCATCCAGCTATGATATAGTCAG 58.165 38.462 0.02 0.00 40.92 3.51
2966 3356 7.781324 TGTTCATCCAGCTATGATATAGTCA 57.219 36.000 0.02 0.00 42.06 3.41
2984 3374 3.708403 TGAATCAGTCAGGCTGTTCAT 57.292 42.857 15.27 0.00 45.23 2.57
2985 3375 3.405831 CTTGAATCAGTCAGGCTGTTCA 58.594 45.455 15.27 13.36 45.23 3.18
2997 3387 4.081862 ACAACCAATGGATGCTTGAATCAG 60.082 41.667 6.16 0.00 30.59 2.90
3003 3393 1.001068 TGCACAACCAATGGATGCTTG 59.999 47.619 21.51 12.31 37.20 4.01
3005 3395 0.892755 CTGCACAACCAATGGATGCT 59.107 50.000 21.51 4.71 37.20 3.79
3006 3396 0.108520 CCTGCACAACCAATGGATGC 60.109 55.000 6.16 13.22 36.81 3.91
3010 3400 1.000060 CAGAACCTGCACAACCAATGG 60.000 52.381 0.00 0.00 0.00 3.16
3089 3479 1.217585 ATCAGACGATGGCATTCGCG 61.218 55.000 15.79 0.00 42.82 5.87
3095 3485 1.000938 CGATCAGATCAGACGATGGCA 60.001 52.381 11.12 0.00 29.66 4.92
3140 3530 6.248433 AGAAAAGAGGGACATGCTATCAAAA 58.752 36.000 0.00 0.00 0.00 2.44
3226 3619 7.284489 AGTGCAAAATCTTAAACCTAACAGACA 59.716 33.333 0.00 0.00 0.00 3.41
3236 3629 6.238076 CCAAACCACAGTGCAAAATCTTAAAC 60.238 38.462 0.00 0.00 0.00 2.01
3277 3673 4.907879 AAGCTCTTTCAGGTTCAAACTG 57.092 40.909 0.00 0.00 38.54 3.16
3323 3722 5.047021 CCAGACTTCTCAGGTGAATACTTGA 60.047 44.000 0.00 0.00 40.18 3.02
3341 3740 7.335422 CAGACTAATTAACATTCAAGCCAGACT 59.665 37.037 0.00 0.00 0.00 3.24
3352 3751 9.284968 ACACTTAGCAACAGACTAATTAACATT 57.715 29.630 0.00 0.00 0.00 2.71
3394 3796 0.176680 AAAATGGCAAACACGCACCA 59.823 45.000 0.00 0.00 36.43 4.17
3478 3968 2.555325 CAAGCATTCTCCAGAACTGCAA 59.445 45.455 18.08 0.00 39.13 4.08
3480 3970 1.471684 CCAAGCATTCTCCAGAACTGC 59.528 52.381 12.26 12.26 38.07 4.40
3484 3974 1.623311 TCGACCAAGCATTCTCCAGAA 59.377 47.619 0.00 0.00 38.56 3.02
3496 4120 9.158364 CAAATATCGTCAAATTATTCGACCAAG 57.842 33.333 0.00 0.00 35.24 3.61
3514 4153 6.487960 TGCCACGGTAAAATAACAAATATCG 58.512 36.000 0.00 0.00 0.00 2.92
3518 4157 6.274157 TCATGCCACGGTAAAATAACAAAT 57.726 33.333 0.00 0.00 0.00 2.32
3538 4178 5.690865 TCACCAACTAACTTGTTTCCTCAT 58.309 37.500 0.00 0.00 0.00 2.90
3553 4193 2.951642 CACCTTGTCACATTCACCAACT 59.048 45.455 0.00 0.00 0.00 3.16
3579 4219 3.300009 CATTTCGAACAGTTGTCAAGGC 58.700 45.455 0.00 0.00 0.00 4.35
3580 4220 3.243035 TGCATTTCGAACAGTTGTCAAGG 60.243 43.478 0.00 0.00 0.00 3.61
3584 4224 3.878086 TCTGCATTTCGAACAGTTGTC 57.122 42.857 12.41 1.30 33.12 3.18
3585 4225 4.096382 AGTTTCTGCATTTCGAACAGTTGT 59.904 37.500 12.41 0.00 33.12 3.32
3612 4252 4.438065 GCAAAGCACCGTTTTCCAATTTTT 60.438 37.500 0.00 0.00 0.00 1.94
3613 4253 3.064682 GCAAAGCACCGTTTTCCAATTTT 59.935 39.130 0.00 0.00 0.00 1.82
3614 4254 2.611751 GCAAAGCACCGTTTTCCAATTT 59.388 40.909 0.00 0.00 0.00 1.82
3615 4255 2.158971 AGCAAAGCACCGTTTTCCAATT 60.159 40.909 0.00 0.00 0.00 2.32
3616 4256 1.412343 AGCAAAGCACCGTTTTCCAAT 59.588 42.857 0.00 0.00 0.00 3.16
3618 4258 0.820871 AAGCAAAGCACCGTTTTCCA 59.179 45.000 0.00 0.00 0.00 3.53
3625 4265 1.401539 GCCTAGAAAAGCAAAGCACCG 60.402 52.381 0.00 0.00 0.00 4.94
3669 4309 2.386249 GATACAGAGCACGAATCGGTC 58.614 52.381 7.80 0.54 0.00 4.79
3671 4311 1.603172 GGGATACAGAGCACGAATCGG 60.603 57.143 7.80 0.00 39.74 4.18
3674 4314 3.627395 TTTGGGATACAGAGCACGAAT 57.373 42.857 0.00 0.00 39.74 3.34
3675 4315 3.410631 TTTTGGGATACAGAGCACGAA 57.589 42.857 0.00 0.00 39.74 3.85
3701 4358 2.430248 TGTGCCTTCATGCATCTCAT 57.570 45.000 0.00 0.00 44.30 2.90
3708 4365 0.032403 TGCTGTTTGTGCCTTCATGC 59.968 50.000 0.00 0.00 0.00 4.06
3730 4387 9.932699 CTTATTCTCTTTTACAATGCTCTCATG 57.067 33.333 0.00 0.00 32.23 3.07
3742 4399 4.330074 TGCTCGCTGCTTATTCTCTTTTAC 59.670 41.667 0.00 0.00 43.37 2.01
3743 4400 4.503910 TGCTCGCTGCTTATTCTCTTTTA 58.496 39.130 0.00 0.00 43.37 1.52
3744 4401 3.338249 TGCTCGCTGCTTATTCTCTTTT 58.662 40.909 0.00 0.00 43.37 2.27
3746 4403 2.548875 CTGCTCGCTGCTTATTCTCTT 58.451 47.619 0.00 0.00 43.37 2.85
3750 4407 1.645997 GGCTGCTCGCTGCTTATTC 59.354 57.895 18.02 0.53 43.37 1.75
3753 4410 2.541547 AATGGGCTGCTCGCTGCTTA 62.542 55.000 18.02 9.47 43.37 3.09
3754 4411 3.933048 AATGGGCTGCTCGCTGCTT 62.933 57.895 18.02 4.72 43.37 3.91
3758 4417 1.303561 TCAAAATGGGCTGCTCGCT 60.304 52.632 0.00 0.00 39.13 4.93
3775 4434 8.596380 CGTTCATCCTTAGATAAACTTGAAGTC 58.404 37.037 0.00 0.00 29.48 3.01
3779 4438 5.815740 GCCGTTCATCCTTAGATAAACTTGA 59.184 40.000 0.00 0.00 29.48 3.02
3783 4442 6.431198 TTTGCCGTTCATCCTTAGATAAAC 57.569 37.500 0.00 0.00 28.47 2.01
3796 4458 4.576216 TTGCTTCTTTATTTGCCGTTCA 57.424 36.364 0.00 0.00 0.00 3.18
3808 4470 6.890979 AACTATCTGCTTCTTTGCTTCTTT 57.109 33.333 0.00 0.00 0.00 2.52
3809 4471 6.890979 AAACTATCTGCTTCTTTGCTTCTT 57.109 33.333 0.00 0.00 0.00 2.52
3810 4472 6.093357 GCTAAACTATCTGCTTCTTTGCTTCT 59.907 38.462 0.00 0.00 0.00 2.85
3811 4473 6.254480 GCTAAACTATCTGCTTCTTTGCTTC 58.746 40.000 0.00 0.00 0.00 3.86
3812 4474 5.163814 CGCTAAACTATCTGCTTCTTTGCTT 60.164 40.000 0.00 0.00 0.00 3.91
3813 4475 4.331168 CGCTAAACTATCTGCTTCTTTGCT 59.669 41.667 0.00 0.00 0.00 3.91
3814 4476 4.330074 TCGCTAAACTATCTGCTTCTTTGC 59.670 41.667 0.00 0.00 0.00 3.68
3815 4477 5.578727 ACTCGCTAAACTATCTGCTTCTTTG 59.421 40.000 0.00 0.00 0.00 2.77
3840 4502 1.227823 CCTGGTTCAAGACGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
3909 4583 2.857618 TGTATGCGCGGAATTTTGTTC 58.142 42.857 3.18 0.00 0.00 3.18
3942 4616 1.001378 GAACTTTGTGCAGCGGACATT 60.001 47.619 4.05 0.00 0.00 2.71
3948 4622 3.811722 TTCATAGAACTTTGTGCAGCG 57.188 42.857 0.00 0.00 0.00 5.18
4023 4697 6.317789 AGACAAAACATTGTGTCATCGAAT 57.682 33.333 15.63 0.00 45.40 3.34
4026 4700 6.201517 AGAAAGACAAAACATTGTGTCATCG 58.798 36.000 15.63 0.00 45.40 3.84
4027 4701 7.515684 GCAAGAAAGACAAAACATTGTGTCATC 60.516 37.037 15.63 12.79 45.40 2.92
4029 4703 5.576384 GCAAGAAAGACAAAACATTGTGTCA 59.424 36.000 15.63 0.00 45.40 3.58
4067 4742 7.151999 TCTAAAGTTTCACAGAAAAGCAACA 57.848 32.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.