Multiple sequence alignment - TraesCS6A01G385500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G385500 chr6A 100.000 4527 0 0 1 4527 603187408 603182882 0.000000e+00 8360.0
1 TraesCS6A01G385500 chr6A 94.118 51 3 0 2872 2922 603184489 603184439 1.350000e-10 78.7
2 TraesCS6A01G385500 chr6A 94.118 51 3 0 2920 2970 603184537 603184487 1.350000e-10 78.7
3 TraesCS6A01G385500 chr6B 88.533 1936 141 33 2648 4527 694118014 694116104 0.000000e+00 2270.0
4 TraesCS6A01G385500 chr6B 90.596 1276 99 15 393 1655 694120138 694118871 0.000000e+00 1672.0
5 TraesCS6A01G385500 chr6B 93.764 433 22 5 1699 2130 694118775 694118347 0.000000e+00 645.0
6 TraesCS6A01G385500 chr6B 93.059 389 24 3 1 388 694120887 694120501 2.360000e-157 566.0
7 TraesCS6A01G385500 chr6B 93.009 329 15 6 2234 2554 694118350 694118022 1.470000e-129 473.0
8 TraesCS6A01G385500 chr6B 92.308 104 6 2 2546 2649 4186004 4185903 3.650000e-31 147.0
9 TraesCS6A01G385500 chr6D 91.035 1662 120 23 1 1655 456459031 456457392 0.000000e+00 2217.0
10 TraesCS6A01G385500 chr6D 91.327 761 54 7 3101 3856 456455938 456455185 0.000000e+00 1029.0
11 TraesCS6A01G385500 chr6D 94.872 429 20 2 1699 2127 456457292 456456866 0.000000e+00 669.0
12 TraesCS6A01G385500 chr6D 96.481 341 7 5 2231 2566 456456868 456456528 3.960000e-155 558.0
13 TraesCS6A01G385500 chr6D 92.593 324 9 6 2648 2967 456456529 456456217 6.910000e-123 451.0
14 TraesCS6A01G385500 chr6D 79.634 383 22 28 3941 4298 456455091 456454740 1.640000e-54 224.0
15 TraesCS6A01G385500 chr6D 96.774 93 3 0 2562 2654 16703142 16703050 6.060000e-34 156.0
16 TraesCS6A01G385500 chr7B 86.111 432 24 11 4118 4527 27212685 27212268 2.500000e-117 433.0
17 TraesCS6A01G385500 chr4B 85.676 370 17 11 4118 4465 24963777 24963422 1.550000e-94 357.0
18 TraesCS6A01G385500 chr3B 82.637 311 18 11 4118 4406 754020749 754021045 4.520000e-60 243.0
19 TraesCS6A01G385500 chr3B 94.545 110 4 2 2125 2233 78608630 78608738 7.790000e-38 169.0
20 TraesCS6A01G385500 chr3B 93.578 109 7 0 2125 2233 252930356 252930464 3.620000e-36 163.0
21 TraesCS6A01G385500 chr5B 82.428 313 19 15 4118 4408 45136028 45136326 1.630000e-59 241.0
22 TraesCS6A01G385500 chr5B 91.667 108 9 0 2126 2233 115399119 115399226 2.820000e-32 150.0
23 TraesCS6A01G385500 chr1A 92.105 114 7 2 2121 2233 19894861 19894973 4.690000e-35 159.0
24 TraesCS6A01G385500 chr1A 95.918 98 4 0 2558 2655 561611334 561611237 4.690000e-35 159.0
25 TraesCS6A01G385500 chr1A 92.661 109 8 0 2126 2234 586723798 586723906 1.690000e-34 158.0
26 TraesCS6A01G385500 chr3A 92.661 109 8 0 2125 2233 213129911 213130019 1.690000e-34 158.0
27 TraesCS6A01G385500 chr4D 91.892 111 7 2 2125 2234 83277521 83277630 2.180000e-33 154.0
28 TraesCS6A01G385500 chr4A 96.774 93 2 1 2565 2656 241153023 241152931 2.180000e-33 154.0
29 TraesCS6A01G385500 chr4A 92.308 104 5 3 2548 2650 24824443 24824544 1.310000e-30 145.0
30 TraesCS6A01G385500 chr2D 95.000 100 2 3 2553 2649 325754001 325754100 2.180000e-33 154.0
31 TraesCS6A01G385500 chr2D 90.517 116 8 3 2120 2233 194730994 194731108 2.820000e-32 150.0
32 TraesCS6A01G385500 chr2D 94.737 95 5 0 2565 2659 201441653 201441559 1.010000e-31 148.0
33 TraesCS6A01G385500 chr5A 94.059 101 5 1 2565 2664 280154698 280154598 7.840000e-33 152.0
34 TraesCS6A01G385500 chr7D 94.792 96 5 0 2554 2649 622185053 622185148 2.820000e-32 150.0
35 TraesCS6A01G385500 chr1B 90.435 115 9 2 2126 2239 102627105 102626992 2.820000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G385500 chr6A 603182882 603187408 4526 True 2839.133333 8360 96.078667 1 4527 3 chr6A.!!$R1 4526
1 TraesCS6A01G385500 chr6B 694116104 694120887 4783 True 1125.200000 2270 91.792200 1 4527 5 chr6B.!!$R2 4526
2 TraesCS6A01G385500 chr6D 456454740 456459031 4291 True 858.000000 2217 90.990333 1 4298 6 chr6D.!!$R2 4297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1363 0.774276 TCCAAGGGGTAATGCACACA 59.226 50.0 0.0 0.0 34.93 3.72 F
1685 2132 0.990374 ACCTTCTTGCAGCTCCAGAT 59.010 50.0 0.0 0.0 0.00 2.90 F
3261 3886 0.178068 ACTGGCAAGAACAGACGTGT 59.822 50.0 0.0 0.0 39.24 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2349 0.540923 ACTTCTCATGGAGCTCAGGC 59.459 55.000 17.19 0.0 39.06 4.85 R
3307 3933 0.401738 TTTGGAGCTGTGAAGAGGGG 59.598 55.000 0.00 0.0 0.00 4.79 R
4358 5049 1.068472 CCGTCGTCACAAGAGTAAGCT 60.068 52.381 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.927668 AAATGGAGTCAGTTTAAAATATTGGTG 57.072 29.630 0.00 0.00 0.00 4.17
72 73 7.600752 GGACTATCTGCTTGATGGTTATAGAAC 59.399 40.741 9.66 0.00 45.11 3.01
145 146 0.844661 ACCCTCCCCTATGCACACAA 60.845 55.000 0.00 0.00 0.00 3.33
190 191 2.781667 AGCCCCTGAATTGATCCTAGT 58.218 47.619 0.00 0.00 0.00 2.57
232 233 9.807921 AAAACTTTAATCCCTGTTCTTCTATGA 57.192 29.630 0.00 0.00 0.00 2.15
276 277 8.873830 ACAAGTAAGTATCAACATCGATTCAAG 58.126 33.333 0.00 0.00 0.00 3.02
303 304 2.738846 CTGTAACAGCAACGCAGAATCT 59.261 45.455 0.00 0.00 0.00 2.40
304 305 2.480037 TGTAACAGCAACGCAGAATCTG 59.520 45.455 5.78 5.78 34.12 2.90
371 376 9.103861 CTCTCTCAGATTAGTTATTTGTTTCCC 57.896 37.037 0.00 0.00 0.00 3.97
372 377 8.047310 TCTCTCAGATTAGTTATTTGTTTCCCC 58.953 37.037 0.00 0.00 0.00 4.81
373 378 7.928873 TCTCAGATTAGTTATTTGTTTCCCCT 58.071 34.615 0.00 0.00 0.00 4.79
374 379 8.390921 TCTCAGATTAGTTATTTGTTTCCCCTT 58.609 33.333 0.00 0.00 0.00 3.95
375 380 8.575649 TCAGATTAGTTATTTGTTTCCCCTTC 57.424 34.615 0.00 0.00 0.00 3.46
376 381 8.167392 TCAGATTAGTTATTTGTTTCCCCTTCA 58.833 33.333 0.00 0.00 0.00 3.02
377 382 8.802267 CAGATTAGTTATTTGTTTCCCCTTCAA 58.198 33.333 0.00 0.00 0.00 2.69
378 383 9.374711 AGATTAGTTATTTGTTTCCCCTTCAAA 57.625 29.630 0.00 0.00 35.92 2.69
379 384 9.639601 GATTAGTTATTTGTTTCCCCTTCAAAG 57.360 33.333 0.00 0.00 35.14 2.77
387 392 6.806668 TGTTTCCCCTTCAAAGAAAAAGAT 57.193 33.333 0.00 0.00 31.71 2.40
392 397 7.616528 TCCCCTTCAAAGAAAAAGATGATTT 57.383 32.000 0.00 0.00 0.00 2.17
393 398 8.719645 TCCCCTTCAAAGAAAAAGATGATTTA 57.280 30.769 0.00 0.00 0.00 1.40
394 399 8.806146 TCCCCTTCAAAGAAAAAGATGATTTAG 58.194 33.333 0.00 0.00 0.00 1.85
475 841 4.156739 GGGCTTGTTCTATTCAGTTCTTGG 59.843 45.833 0.00 0.00 0.00 3.61
532 900 7.064866 AGAAGGGATTGAATCTGCAAATCATA 58.935 34.615 5.03 0.00 0.00 2.15
586 954 7.724305 TGTTCCTGTTACTTCTTGATTACAC 57.276 36.000 0.00 0.00 0.00 2.90
587 955 7.276658 TGTTCCTGTTACTTCTTGATTACACA 58.723 34.615 0.00 0.00 0.00 3.72
808 1185 4.792521 AGACAAATTCTCGCTAGTCAGT 57.207 40.909 0.00 0.00 0.00 3.41
809 1186 4.489810 AGACAAATTCTCGCTAGTCAGTG 58.510 43.478 0.00 0.00 0.00 3.66
855 1232 6.968904 CCAATTATCTCAACGATTGAACAAGG 59.031 38.462 0.00 0.00 39.58 3.61
899 1277 7.862873 CACTGTTTTCCTTTCCAAGTTAGAATC 59.137 37.037 0.00 0.00 0.00 2.52
900 1278 7.014326 ACTGTTTTCCTTTCCAAGTTAGAATCC 59.986 37.037 0.00 0.00 0.00 3.01
904 1282 6.062258 TCCTTTCCAAGTTAGAATCCGATT 57.938 37.500 0.00 0.00 0.00 3.34
919 1297 1.065418 CCGATTGGCCCTTACACTTCT 60.065 52.381 0.00 0.00 0.00 2.85
932 1310 6.708054 CCCTTACACTTCTCCAATGATATGAC 59.292 42.308 0.00 0.00 0.00 3.06
933 1311 7.275183 CCTTACACTTCTCCAATGATATGACA 58.725 38.462 0.00 0.00 0.00 3.58
934 1312 7.440556 CCTTACACTTCTCCAATGATATGACAG 59.559 40.741 0.00 0.00 0.00 3.51
941 1319 7.852550 TCTCCAATGATATGACAGAAGATCT 57.147 36.000 0.00 0.00 0.00 2.75
985 1363 0.774276 TCCAAGGGGTAATGCACACA 59.226 50.000 0.00 0.00 34.93 3.72
1013 1391 9.112725 CCATACATCAATAATGAGTCAGTTTCA 57.887 33.333 0.00 0.00 39.39 2.69
1017 1395 9.017509 ACATCAATAATGAGTCAGTTTCACAAT 57.982 29.630 0.00 0.00 39.39 2.71
1083 1461 4.083003 CCAGTACTCTCTGAAGTCACAGTC 60.083 50.000 0.00 0.00 38.79 3.51
1093 1471 5.130477 TCTGAAGTCACAGTCCCTAGTTTTT 59.870 40.000 0.00 0.00 38.79 1.94
1129 1507 7.939039 GGACATCTTACATTGAAAGGGATATGA 59.061 37.037 0.00 0.00 0.00 2.15
1132 1510 7.141758 TCTTACATTGAAAGGGATATGAGCT 57.858 36.000 0.00 0.00 0.00 4.09
1159 1537 5.244178 AGTTCTATCACCTCATTCGATACCC 59.756 44.000 0.00 0.00 0.00 3.69
1164 1542 3.258372 TCACCTCATTCGATACCCTATGC 59.742 47.826 0.00 0.00 0.00 3.14
1219 1597 6.042777 TCAGATCTTCGTATCAACAATGGAC 58.957 40.000 0.00 0.00 0.00 4.02
1307 1685 4.217767 GCCATCAGCACATTCATCATACAT 59.782 41.667 0.00 0.00 42.97 2.29
1310 1688 3.566742 TCAGCACATTCATCATACATGGC 59.433 43.478 0.00 0.00 0.00 4.40
1353 1731 6.678568 ATGGTCTATCCCAAAGTATCTGAG 57.321 41.667 0.00 0.00 38.20 3.35
1355 1733 4.284746 GGTCTATCCCAAAGTATCTGAGGG 59.715 50.000 0.00 0.00 40.98 4.30
1364 1742 7.036863 TCCCAAAGTATCTGAGGGAATAAACTT 60.037 37.037 0.00 0.00 45.19 2.66
1414 1792 5.581350 TGGATATCCAGCAACCATTGATA 57.419 39.130 20.98 0.00 42.01 2.15
1431 1809 8.906867 ACCATTGATATTTCTGATCAACGAAAT 58.093 29.630 20.47 20.47 44.03 2.17
1440 1818 6.169419 TCTGATCAACGAAATGTGATTGTC 57.831 37.500 0.00 0.00 0.00 3.18
1530 1908 2.435069 CTCATCTGGGAGTTCAGAGCAT 59.565 50.000 0.00 0.00 45.60 3.79
1548 1926 2.893489 GCATTTTCTGGGAAGTTCAGGT 59.107 45.455 5.01 0.00 33.36 4.00
1589 1967 7.172361 GCTTAAGGTATCCATCTCATTTGACTC 59.828 40.741 4.29 0.00 0.00 3.36
1590 1968 6.821616 AAGGTATCCATCTCATTTGACTCT 57.178 37.500 0.00 0.00 0.00 3.24
1595 1973 8.401709 GGTATCCATCTCATTTGACTCTTTTTC 58.598 37.037 0.00 0.00 0.00 2.29
1596 1974 9.171877 GTATCCATCTCATTTGACTCTTTTTCT 57.828 33.333 0.00 0.00 0.00 2.52
1600 1978 6.551385 TCTCATTTGACTCTTTTTCTGCTC 57.449 37.500 0.00 0.00 0.00 4.26
1611 1989 3.542712 TTTTCTGCTCGTGATTTGCTC 57.457 42.857 0.00 0.00 0.00 4.26
1617 1995 5.660460 TCTGCTCGTGATTTGCTCTAATTA 58.340 37.500 0.00 0.00 0.00 1.40
1625 2003 8.638873 TCGTGATTTGCTCTAATTATTCTAGGA 58.361 33.333 0.00 0.00 0.00 2.94
1633 2011 9.823647 TGCTCTAATTATTCTAGGAGTTTTCAG 57.176 33.333 0.00 0.00 0.00 3.02
1648 2026 6.238511 GGAGTTTTCAGTGTCTTCTCTTTTCC 60.239 42.308 0.00 0.00 0.00 3.13
1649 2027 6.180472 AGTTTTCAGTGTCTTCTCTTTTCCA 58.820 36.000 0.00 0.00 0.00 3.53
1685 2132 0.990374 ACCTTCTTGCAGCTCCAGAT 59.010 50.000 0.00 0.00 0.00 2.90
1686 2133 1.339824 ACCTTCTTGCAGCTCCAGATG 60.340 52.381 0.00 0.00 34.00 2.90
1693 2140 3.261250 CAGCTCCAGATGCAACCTT 57.739 52.632 0.00 0.00 0.00 3.50
1694 2141 1.542492 CAGCTCCAGATGCAACCTTT 58.458 50.000 0.00 0.00 0.00 3.11
1695 2142 1.891150 CAGCTCCAGATGCAACCTTTT 59.109 47.619 0.00 0.00 0.00 2.27
1696 2143 2.298163 CAGCTCCAGATGCAACCTTTTT 59.702 45.455 0.00 0.00 0.00 1.94
1697 2144 2.560105 AGCTCCAGATGCAACCTTTTTC 59.440 45.455 0.00 0.00 0.00 2.29
1698 2145 2.297033 GCTCCAGATGCAACCTTTTTCA 59.703 45.455 0.00 0.00 0.00 2.69
1813 2260 5.220453 GCATATTTTCATGGGCAGAAAAACG 60.220 40.000 13.21 7.87 45.02 3.60
1815 2262 1.698506 TTCATGGGCAGAAAAACGGT 58.301 45.000 0.00 0.00 0.00 4.83
1851 2298 2.349817 CGTGGATGAACTTTGCAGTGAC 60.350 50.000 0.00 0.00 31.60 3.67
1862 2309 5.831997 ACTTTGCAGTGACAATTTACCTTC 58.168 37.500 0.00 0.00 0.00 3.46
1932 2379 2.549754 CCATGAGAAGTTTGTTGACGCT 59.450 45.455 0.00 0.00 0.00 5.07
2130 2578 5.063060 GTCATGTCGGTATTTGTTGTACTCC 59.937 44.000 0.00 0.00 0.00 3.85
2131 2579 3.929094 TGTCGGTATTTGTTGTACTCCC 58.071 45.455 0.00 0.00 0.00 4.30
2132 2580 3.579586 TGTCGGTATTTGTTGTACTCCCT 59.420 43.478 0.00 0.00 0.00 4.20
2133 2581 4.179298 GTCGGTATTTGTTGTACTCCCTC 58.821 47.826 0.00 0.00 0.00 4.30
2134 2582 4.081807 GTCGGTATTTGTTGTACTCCCTCT 60.082 45.833 0.00 0.00 0.00 3.69
2135 2583 4.081862 TCGGTATTTGTTGTACTCCCTCTG 60.082 45.833 0.00 0.00 0.00 3.35
2136 2584 4.322499 CGGTATTTGTTGTACTCCCTCTGT 60.322 45.833 0.00 0.00 0.00 3.41
2137 2585 5.557866 GGTATTTGTTGTACTCCCTCTGTT 58.442 41.667 0.00 0.00 0.00 3.16
2138 2586 5.642491 GGTATTTGTTGTACTCCCTCTGTTC 59.358 44.000 0.00 0.00 0.00 3.18
2139 2587 4.764050 TTTGTTGTACTCCCTCTGTTCA 57.236 40.909 0.00 0.00 0.00 3.18
2140 2588 4.974645 TTGTTGTACTCCCTCTGTTCAT 57.025 40.909 0.00 0.00 0.00 2.57
2141 2589 4.974645 TGTTGTACTCCCTCTGTTCATT 57.025 40.909 0.00 0.00 0.00 2.57
2142 2590 5.304686 TGTTGTACTCCCTCTGTTCATTT 57.695 39.130 0.00 0.00 0.00 2.32
2143 2591 5.690865 TGTTGTACTCCCTCTGTTCATTTT 58.309 37.500 0.00 0.00 0.00 1.82
2144 2592 6.126409 TGTTGTACTCCCTCTGTTCATTTTT 58.874 36.000 0.00 0.00 0.00 1.94
2145 2593 6.039270 TGTTGTACTCCCTCTGTTCATTTTTG 59.961 38.462 0.00 0.00 0.00 2.44
2146 2594 5.690865 TGTACTCCCTCTGTTCATTTTTGT 58.309 37.500 0.00 0.00 0.00 2.83
2147 2595 6.833041 TGTACTCCCTCTGTTCATTTTTGTA 58.167 36.000 0.00 0.00 0.00 2.41
2148 2596 7.284074 TGTACTCCCTCTGTTCATTTTTGTAA 58.716 34.615 0.00 0.00 0.00 2.41
2149 2597 6.884280 ACTCCCTCTGTTCATTTTTGTAAG 57.116 37.500 0.00 0.00 0.00 2.34
2150 2598 6.601332 ACTCCCTCTGTTCATTTTTGTAAGA 58.399 36.000 0.00 0.00 0.00 2.10
2151 2599 6.486993 ACTCCCTCTGTTCATTTTTGTAAGAC 59.513 38.462 0.00 0.00 0.00 3.01
2152 2600 5.468746 TCCCTCTGTTCATTTTTGTAAGACG 59.531 40.000 0.00 0.00 0.00 4.18
2153 2601 5.238650 CCCTCTGTTCATTTTTGTAAGACGT 59.761 40.000 0.00 0.00 0.00 4.34
2154 2602 6.238648 CCCTCTGTTCATTTTTGTAAGACGTT 60.239 38.462 0.00 0.00 0.00 3.99
2155 2603 7.193595 CCTCTGTTCATTTTTGTAAGACGTTT 58.806 34.615 0.00 0.00 0.00 3.60
2156 2604 7.376072 CCTCTGTTCATTTTTGTAAGACGTTTC 59.624 37.037 0.00 0.00 0.00 2.78
2157 2605 7.753659 TCTGTTCATTTTTGTAAGACGTTTCA 58.246 30.769 0.00 0.00 0.00 2.69
2158 2606 7.908082 TCTGTTCATTTTTGTAAGACGTTTCAG 59.092 33.333 0.00 0.00 0.00 3.02
2159 2607 7.753659 TGTTCATTTTTGTAAGACGTTTCAGA 58.246 30.769 0.00 0.00 0.00 3.27
2160 2608 7.694784 TGTTCATTTTTGTAAGACGTTTCAGAC 59.305 33.333 0.00 0.00 0.00 3.51
2161 2609 7.310072 TCATTTTTGTAAGACGTTTCAGACA 57.690 32.000 0.00 0.00 0.00 3.41
2162 2610 7.925993 TCATTTTTGTAAGACGTTTCAGACAT 58.074 30.769 0.00 0.00 0.00 3.06
2163 2611 8.402472 TCATTTTTGTAAGACGTTTCAGACATT 58.598 29.630 0.00 0.00 0.00 2.71
2164 2612 9.019764 CATTTTTGTAAGACGTTTCAGACATTT 57.980 29.630 0.00 0.00 0.00 2.32
2167 2615 9.710979 TTTTGTAAGACGTTTCAGACATTTAAG 57.289 29.630 0.00 0.00 0.00 1.85
2168 2616 8.651391 TTGTAAGACGTTTCAGACATTTAAGA 57.349 30.769 0.00 0.00 0.00 2.10
2169 2617 8.068893 TGTAAGACGTTTCAGACATTTAAGAC 57.931 34.615 0.00 0.00 0.00 3.01
2170 2618 7.707464 TGTAAGACGTTTCAGACATTTAAGACA 59.293 33.333 0.00 0.00 0.00 3.41
2171 2619 7.548196 AAGACGTTTCAGACATTTAAGACAA 57.452 32.000 0.00 0.00 0.00 3.18
2172 2620 6.945072 AGACGTTTCAGACATTTAAGACAAC 58.055 36.000 0.00 0.00 0.00 3.32
2173 2621 6.537301 AGACGTTTCAGACATTTAAGACAACA 59.463 34.615 0.00 0.00 0.00 3.33
2174 2622 6.483687 ACGTTTCAGACATTTAAGACAACAC 58.516 36.000 0.00 0.00 0.00 3.32
2175 2623 5.907391 CGTTTCAGACATTTAAGACAACACC 59.093 40.000 0.00 0.00 0.00 4.16
2176 2624 6.206498 GTTTCAGACATTTAAGACAACACCC 58.794 40.000 0.00 0.00 0.00 4.61
2177 2625 5.042463 TCAGACATTTAAGACAACACCCA 57.958 39.130 0.00 0.00 0.00 4.51
2178 2626 5.441500 TCAGACATTTAAGACAACACCCAA 58.558 37.500 0.00 0.00 0.00 4.12
2179 2627 5.888724 TCAGACATTTAAGACAACACCCAAA 59.111 36.000 0.00 0.00 0.00 3.28
2180 2628 6.378564 TCAGACATTTAAGACAACACCCAAAA 59.621 34.615 0.00 0.00 0.00 2.44
2181 2629 6.475402 CAGACATTTAAGACAACACCCAAAAC 59.525 38.462 0.00 0.00 0.00 2.43
2182 2630 6.153680 AGACATTTAAGACAACACCCAAAACA 59.846 34.615 0.00 0.00 0.00 2.83
2183 2631 6.337356 ACATTTAAGACAACACCCAAAACAG 58.663 36.000 0.00 0.00 0.00 3.16
2184 2632 5.986501 TTTAAGACAACACCCAAAACAGT 57.013 34.783 0.00 0.00 0.00 3.55
2185 2633 5.986501 TTAAGACAACACCCAAAACAGTT 57.013 34.783 0.00 0.00 0.00 3.16
2186 2634 4.882842 AAGACAACACCCAAAACAGTTT 57.117 36.364 0.00 0.00 0.00 2.66
2187 2635 5.986501 AAGACAACACCCAAAACAGTTTA 57.013 34.783 0.00 0.00 0.00 2.01
2188 2636 5.986501 AGACAACACCCAAAACAGTTTAA 57.013 34.783 0.00 0.00 0.00 1.52
2189 2637 6.538945 AGACAACACCCAAAACAGTTTAAT 57.461 33.333 0.00 0.00 0.00 1.40
2190 2638 6.941857 AGACAACACCCAAAACAGTTTAATT 58.058 32.000 0.00 0.00 0.00 1.40
2191 2639 7.390823 AGACAACACCCAAAACAGTTTAATTT 58.609 30.769 0.00 0.00 0.00 1.82
2192 2640 7.547722 AGACAACACCCAAAACAGTTTAATTTC 59.452 33.333 0.00 0.00 0.00 2.17
2193 2641 7.162082 ACAACACCCAAAACAGTTTAATTTCA 58.838 30.769 0.00 0.00 0.00 2.69
2194 2642 7.333174 ACAACACCCAAAACAGTTTAATTTCAG 59.667 33.333 0.00 0.00 0.00 3.02
2195 2643 5.815222 ACACCCAAAACAGTTTAATTTCAGC 59.185 36.000 0.00 0.00 0.00 4.26
2196 2644 6.048509 CACCCAAAACAGTTTAATTTCAGCT 58.951 36.000 0.00 0.00 0.00 4.24
2197 2645 6.018832 CACCCAAAACAGTTTAATTTCAGCTG 60.019 38.462 7.63 7.63 0.00 4.24
2198 2646 6.048509 CCCAAAACAGTTTAATTTCAGCTGT 58.951 36.000 14.67 0.00 41.51 4.40
2199 2647 6.200854 CCCAAAACAGTTTAATTTCAGCTGTC 59.799 38.462 14.67 0.00 39.19 3.51
2200 2648 6.980397 CCAAAACAGTTTAATTTCAGCTGTCT 59.020 34.615 14.67 0.00 39.19 3.41
2201 2649 8.134895 CCAAAACAGTTTAATTTCAGCTGTCTA 58.865 33.333 14.67 0.36 39.19 2.59
2202 2650 9.515020 CAAAACAGTTTAATTTCAGCTGTCTAA 57.485 29.630 14.67 7.33 39.19 2.10
2206 2654 9.683069 ACAGTTTAATTTCAGCTGTCTAAAATG 57.317 29.630 22.70 22.70 35.78 2.32
2207 2655 9.683069 CAGTTTAATTTCAGCTGTCTAAAATGT 57.317 29.630 14.67 6.18 0.00 2.71
2208 2656 9.899226 AGTTTAATTTCAGCTGTCTAAAATGTC 57.101 29.630 14.67 4.62 0.00 3.06
2209 2657 9.899226 GTTTAATTTCAGCTGTCTAAAATGTCT 57.101 29.630 14.67 0.70 0.00 3.41
2213 2661 8.621532 ATTTCAGCTGTCTAAAATGTCTTACA 57.378 30.769 14.67 0.00 0.00 2.41
2214 2662 8.445275 TTTCAGCTGTCTAAAATGTCTTACAA 57.555 30.769 14.67 0.00 0.00 2.41
2215 2663 8.445275 TTCAGCTGTCTAAAATGTCTTACAAA 57.555 30.769 14.67 0.00 0.00 2.83
2216 2664 8.445275 TCAGCTGTCTAAAATGTCTTACAAAA 57.555 30.769 14.67 0.00 0.00 2.44
2217 2665 8.898761 TCAGCTGTCTAAAATGTCTTACAAAAA 58.101 29.630 14.67 0.00 0.00 1.94
2218 2666 9.683069 CAGCTGTCTAAAATGTCTTACAAAAAT 57.317 29.630 5.25 0.00 0.00 1.82
2219 2667 9.683069 AGCTGTCTAAAATGTCTTACAAAAATG 57.317 29.630 0.00 0.00 0.00 2.32
2220 2668 9.677567 GCTGTCTAAAATGTCTTACAAAAATGA 57.322 29.630 0.00 0.00 0.00 2.57
2227 2675 9.533253 AAAATGTCTTACAAAAATGAACAGAGG 57.467 29.630 0.00 0.00 0.00 3.69
2228 2676 6.633500 TGTCTTACAAAAATGAACAGAGGG 57.367 37.500 0.00 0.00 0.00 4.30
2229 2677 6.361433 TGTCTTACAAAAATGAACAGAGGGA 58.639 36.000 0.00 0.00 0.00 4.20
2230 2678 6.486657 TGTCTTACAAAAATGAACAGAGGGAG 59.513 38.462 0.00 0.00 0.00 4.30
2231 2679 6.486993 GTCTTACAAAAATGAACAGAGGGAGT 59.513 38.462 0.00 0.00 0.00 3.85
2232 2680 7.660208 GTCTTACAAAAATGAACAGAGGGAGTA 59.340 37.037 0.00 0.00 0.00 2.59
2233 2681 7.878127 TCTTACAAAAATGAACAGAGGGAGTAG 59.122 37.037 0.00 0.00 0.00 2.57
2234 2682 4.762251 ACAAAAATGAACAGAGGGAGTAGC 59.238 41.667 0.00 0.00 0.00 3.58
2371 2824 6.406370 CCATCTACAGGTCTACATTTGTTCA 58.594 40.000 0.00 0.00 0.00 3.18
2575 3033 6.875972 ATTGTAGTGAATTACTCCCTCTGT 57.124 37.500 0.00 0.00 40.89 3.41
2576 3034 5.916661 TGTAGTGAATTACTCCCTCTGTC 57.083 43.478 0.00 0.00 40.89 3.51
2577 3035 4.710375 TGTAGTGAATTACTCCCTCTGTCC 59.290 45.833 0.00 0.00 40.89 4.02
2578 3036 3.108376 AGTGAATTACTCCCTCTGTCCC 58.892 50.000 0.00 0.00 33.17 4.46
2579 3037 2.838202 GTGAATTACTCCCTCTGTCCCA 59.162 50.000 0.00 0.00 0.00 4.37
2580 3038 3.456277 GTGAATTACTCCCTCTGTCCCAT 59.544 47.826 0.00 0.00 0.00 4.00
2581 3039 4.654262 GTGAATTACTCCCTCTGTCCCATA 59.346 45.833 0.00 0.00 0.00 2.74
2582 3040 5.130477 GTGAATTACTCCCTCTGTCCCATAA 59.870 44.000 0.00 0.00 0.00 1.90
2583 3041 5.911178 TGAATTACTCCCTCTGTCCCATAAT 59.089 40.000 0.00 0.00 0.00 1.28
2584 3042 7.016268 GTGAATTACTCCCTCTGTCCCATAATA 59.984 40.741 0.00 0.00 0.00 0.98
2585 3043 7.739444 TGAATTACTCCCTCTGTCCCATAATAT 59.261 37.037 0.00 0.00 0.00 1.28
2586 3044 9.268282 GAATTACTCCCTCTGTCCCATAATATA 57.732 37.037 0.00 0.00 0.00 0.86
2587 3045 9.629649 AATTACTCCCTCTGTCCCATAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
2588 3046 8.666129 TTACTCCCTCTGTCCCATAATATAAG 57.334 38.462 0.00 0.00 0.00 1.73
2589 3047 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2590 3048 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
2591 3049 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
2592 3050 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
2593 3051 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
2594 3052 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
2595 3053 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
2596 3054 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
2597 3055 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
2598 3056 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
2599 3057 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
2600 3058 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2601 3059 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2602 3060 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2608 3066 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
2609 3067 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
2610 3068 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2611 3069 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2624 3082 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
2625 3083 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
2626 3084 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
2627 3085 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
2628 3086 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
2629 3087 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
2630 3088 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
2635 3093 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
2636 3094 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
2637 3095 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
2638 3096 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
2639 3097 7.804129 TCAAAAACGTTCTTATATTTTGGGACG 59.196 33.333 15.53 0.00 39.94 4.79
2640 3098 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
2641 3099 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
2642 3100 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
2643 3101 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
2644 3102 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
2645 3103 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
2646 3104 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
2678 3136 8.571461 ACTTCAGTAGACTTGTTACTTTAACG 57.429 34.615 0.00 0.00 41.50 3.18
2726 3184 7.428020 ACATTATGTTATTTATGTGCAGCCTG 58.572 34.615 0.00 0.00 30.51 4.85
2862 3321 6.156775 TCCCAGAACATGAAGTGAGATAATCA 59.843 38.462 0.00 0.00 34.79 2.57
3050 3636 6.628185 CCTATTTTAGGTTCAGACGTACAGT 58.372 40.000 0.00 0.00 41.18 3.55
3052 3638 8.411683 CCTATTTTAGGTTCAGACGTACAGTAT 58.588 37.037 0.00 0.00 41.18 2.12
3053 3639 9.798994 CTATTTTAGGTTCAGACGTACAGTATT 57.201 33.333 0.00 0.00 0.00 1.89
3055 3641 8.524870 TTTTAGGTTCAGACGTACAGTATTTC 57.475 34.615 0.00 0.00 0.00 2.17
3056 3642 5.717078 AGGTTCAGACGTACAGTATTTCA 57.283 39.130 0.00 0.00 0.00 2.69
3057 3643 6.092955 AGGTTCAGACGTACAGTATTTCAA 57.907 37.500 0.00 0.00 0.00 2.69
3058 3644 6.518493 AGGTTCAGACGTACAGTATTTCAAA 58.482 36.000 0.00 0.00 0.00 2.69
3059 3645 6.645415 AGGTTCAGACGTACAGTATTTCAAAG 59.355 38.462 0.00 0.00 0.00 2.77
3060 3646 6.128634 GGTTCAGACGTACAGTATTTCAAAGG 60.129 42.308 0.00 0.00 0.00 3.11
3068 3654 6.481976 CGTACAGTATTTCAAAGGCATCCATA 59.518 38.462 0.00 0.00 0.00 2.74
3105 3726 3.560068 CCAGTCCACAGTAAAGTTGTGTC 59.440 47.826 4.86 0.00 43.37 3.67
3164 3785 2.042831 GTGCAGACACATGGAGGCC 61.043 63.158 0.00 0.00 46.61 5.19
3240 3865 5.894298 TGAGGTATGCATATTCTCCTTGT 57.106 39.130 24.63 4.94 0.00 3.16
3253 3878 3.740115 TCTCCTTGTAACTGGCAAGAAC 58.260 45.455 0.00 0.00 44.29 3.01
3256 3881 3.135712 TCCTTGTAACTGGCAAGAACAGA 59.864 43.478 0.00 0.00 44.29 3.41
3261 3886 0.178068 ACTGGCAAGAACAGACGTGT 59.822 50.000 0.00 0.00 39.24 4.49
3307 3933 8.918202 AATTTGGGTTCTCTTTTATTTTTCCC 57.082 30.769 0.00 0.00 0.00 3.97
3436 4064 1.207089 CTACCGAGGTTCCAGCATTCA 59.793 52.381 0.00 0.00 0.00 2.57
3488 4116 2.205074 ACAGAGAACAAACAGCAGACG 58.795 47.619 0.00 0.00 0.00 4.18
3528 4156 3.981212 ACCATCCGGAAAAGGAATGAAT 58.019 40.909 23.12 1.77 44.50 2.57
3532 4160 2.491693 TCCGGAAAAGGAATGAATGCAC 59.508 45.455 0.00 0.00 37.36 4.57
3560 4191 3.915437 ACTCGGAATCGCAAACAAAAT 57.085 38.095 0.00 0.00 36.13 1.82
3595 4230 5.049398 TCGAAAGAGTAGCTCAGAAAGTC 57.951 43.478 0.00 0.00 34.84 3.01
3618 4253 8.538701 AGTCAGGATCATAGCCTAATCTAATTG 58.461 37.037 0.00 0.00 33.51 2.32
3619 4254 7.279758 GTCAGGATCATAGCCTAATCTAATTGC 59.720 40.741 0.00 0.00 33.51 3.56
3626 4261 5.620738 AGCCTAATCTAATTGCTGTCTCA 57.379 39.130 0.00 0.00 0.00 3.27
3670 4305 4.806640 AATTATTGTGGGCTGACTTTGG 57.193 40.909 0.00 0.00 0.00 3.28
3692 4327 6.980593 TGGTACACAGATTTTTGATTTGGAG 58.019 36.000 0.00 0.00 0.00 3.86
3705 4340 1.524848 TTTGGAGCGCCGAACATTTA 58.475 45.000 4.83 0.00 36.79 1.40
3742 4378 9.620660 CCAAACTATGGTCACATTTTAGTTTAC 57.379 33.333 6.17 0.00 44.85 2.01
3764 4400 0.673333 ATGTTTCGTCGATGGCAGCA 60.673 50.000 2.73 0.96 0.00 4.41
3824 4460 1.429930 TGGTGCTCACTGGTTAGGAA 58.570 50.000 0.00 0.00 0.00 3.36
3847 4483 7.822822 GGAAGCTTTGTTGTATTTACCTCTCTA 59.177 37.037 0.00 0.00 0.00 2.43
3856 4492 6.907961 TGTATTTACCTCTCTACAGCTCCTA 58.092 40.000 0.00 0.00 0.00 2.94
3910 4546 7.040271 TGGATGATATTGCCATTATTGTCACAG 60.040 37.037 0.00 0.00 0.00 3.66
3911 4547 6.075762 TGATATTGCCATTATTGTCACAGC 57.924 37.500 0.00 0.00 0.00 4.40
3912 4548 5.829391 TGATATTGCCATTATTGTCACAGCT 59.171 36.000 0.00 0.00 0.00 4.24
3914 4550 7.501892 TGATATTGCCATTATTGTCACAGCTTA 59.498 33.333 0.00 0.00 0.00 3.09
3919 4555 5.755813 CCATTATTGTCACAGCTTAGCATC 58.244 41.667 7.07 0.00 0.00 3.91
3936 4602 2.025767 ATCTAGGCTGCTGCTCACGG 62.026 60.000 15.64 2.54 39.59 4.94
3937 4603 3.729965 CTAGGCTGCTGCTCACGGG 62.730 68.421 15.64 0.00 39.59 5.28
4105 4778 1.878522 GGCATAGCAGGTCGTGTCG 60.879 63.158 0.00 0.00 0.00 4.35
4109 4782 2.284798 ATAGCAGGTCGTGTCGCTGG 62.285 60.000 0.00 0.00 35.93 4.85
4132 4805 4.587056 GGTCCATCCCATCAAGCC 57.413 61.111 0.00 0.00 0.00 4.35
4245 4936 1.218316 CGGTGGAGTAGAGGTTGCC 59.782 63.158 0.00 0.00 0.00 4.52
4273 4964 1.094073 CGCCCTGGATCTGCTCAAAG 61.094 60.000 0.00 0.00 0.00 2.77
4275 4966 1.133853 GCCCTGGATCTGCTCAAAGAT 60.134 52.381 0.00 0.00 39.66 2.40
4276 4967 2.573369 CCCTGGATCTGCTCAAAGATG 58.427 52.381 0.00 0.00 37.03 2.90
4287 4978 5.122869 TCTGCTCAAAGATGAAACATACAGC 59.877 40.000 0.00 0.00 34.49 4.40
4298 4989 3.878086 AACATACAGCGTGAAACACAG 57.122 42.857 0.00 0.00 35.74 3.66
4299 4990 2.833794 ACATACAGCGTGAAACACAGT 58.166 42.857 0.00 0.00 35.74 3.55
4300 4991 3.202906 ACATACAGCGTGAAACACAGTT 58.797 40.909 0.00 0.00 35.74 3.16
4301 4992 3.002246 ACATACAGCGTGAAACACAGTTG 59.998 43.478 0.00 0.00 35.74 3.16
4302 4993 1.448985 ACAGCGTGAAACACAGTTGT 58.551 45.000 0.00 0.00 35.74 3.32
4303 4994 2.623535 ACAGCGTGAAACACAGTTGTA 58.376 42.857 11.46 0.00 33.75 2.41
4304 4995 2.607635 ACAGCGTGAAACACAGTTGTAG 59.392 45.455 11.46 0.00 33.75 2.74
4305 4996 2.863740 CAGCGTGAAACACAGTTGTAGA 59.136 45.455 0.00 0.00 35.74 2.59
4307 4998 3.741344 AGCGTGAAACACAGTTGTAGATC 59.259 43.478 0.00 0.00 35.74 2.75
4308 4999 3.493129 GCGTGAAACACAGTTGTAGATCA 59.507 43.478 0.00 0.00 35.74 2.92
4309 5000 4.608445 GCGTGAAACACAGTTGTAGATCAC 60.608 45.833 0.00 10.80 38.90 3.06
4310 5001 4.506288 CGTGAAACACAGTTGTAGATCACA 59.494 41.667 16.62 0.00 40.52 3.58
4311 5002 5.556382 CGTGAAACACAGTTGTAGATCACAC 60.556 44.000 16.62 0.00 40.52 3.82
4312 5003 4.814234 TGAAACACAGTTGTAGATCACACC 59.186 41.667 0.00 0.00 36.69 4.16
4314 5005 4.689612 ACACAGTTGTAGATCACACCTT 57.310 40.909 0.00 0.00 36.69 3.50
4315 5006 4.380531 ACACAGTTGTAGATCACACCTTG 58.619 43.478 0.00 1.05 36.69 3.61
4316 5007 4.141711 ACACAGTTGTAGATCACACCTTGT 60.142 41.667 0.00 1.57 36.69 3.16
4317 5008 4.816385 CACAGTTGTAGATCACACCTTGTT 59.184 41.667 0.00 0.00 36.69 2.83
4319 5010 6.146184 CACAGTTGTAGATCACACCTTGTTAG 59.854 42.308 0.00 0.00 36.69 2.34
4320 5011 5.120830 CAGTTGTAGATCACACCTTGTTAGC 59.879 44.000 0.00 0.00 36.69 3.09
4321 5012 4.882842 TGTAGATCACACCTTGTTAGCA 57.117 40.909 0.00 0.00 30.04 3.49
4322 5013 4.820897 TGTAGATCACACCTTGTTAGCAG 58.179 43.478 0.00 0.00 30.04 4.24
4323 5014 4.283467 TGTAGATCACACCTTGTTAGCAGT 59.717 41.667 0.00 0.00 30.04 4.40
4324 5015 4.357918 AGATCACACCTTGTTAGCAGTT 57.642 40.909 0.00 0.00 0.00 3.16
4325 5016 4.067896 AGATCACACCTTGTTAGCAGTTG 58.932 43.478 0.00 0.00 0.00 3.16
4326 5017 1.946768 TCACACCTTGTTAGCAGTTGC 59.053 47.619 0.00 0.00 42.49 4.17
4327 5018 1.675483 CACACCTTGTTAGCAGTTGCA 59.325 47.619 6.90 0.00 45.16 4.08
4329 5020 2.221169 CACCTTGTTAGCAGTTGCAGA 58.779 47.619 6.90 0.00 45.16 4.26
4330 5021 2.618241 CACCTTGTTAGCAGTTGCAGAA 59.382 45.455 6.90 0.00 45.16 3.02
4332 5023 2.351157 CCTTGTTAGCAGTTGCAGAAGC 60.351 50.000 6.90 0.00 45.16 3.86
4348 5039 3.270839 GCAGAGATGGCAGCGAGC 61.271 66.667 0.00 0.00 44.65 5.03
4357 5048 4.783841 GCAGCGAGCGAGCGTTTG 62.784 66.667 0.00 0.00 43.00 2.93
4358 5049 3.105782 CAGCGAGCGAGCGTTTGA 61.106 61.111 0.00 0.00 43.00 2.69
4372 5063 2.800544 GCGTTTGAGCTTACTCTTGTGA 59.199 45.455 0.00 0.00 43.85 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.233389 TCTATAACCATCAAGCAGATAGTCC 57.767 40.000 0.00 0.00 34.43 3.85
72 73 8.997323 CCCTGAATCTGCTAAATGTATCTAAAG 58.003 37.037 0.00 0.00 0.00 1.85
145 146 5.629079 GAATGGAAAGGAGTTCAATTCGT 57.371 39.130 1.47 0.00 43.58 3.85
232 233 3.502123 TGTTTCTTTGGAGAACGGGAT 57.498 42.857 0.00 0.00 41.46 3.85
276 277 4.151689 TCTGCGTTGCTGTTACAGAATTAC 59.848 41.667 17.40 0.54 34.59 1.89
368 373 7.616528 AAATCATCTTTTTCTTTGAAGGGGA 57.383 32.000 0.00 0.00 0.00 4.81
393 398 9.965902 ATTGATGTAATAGAAGAACCAAGAACT 57.034 29.630 0.00 0.00 0.00 3.01
532 900 3.693807 AGGATTGAGACACATGTGCAAT 58.306 40.909 25.68 23.73 34.44 3.56
586 954 6.809196 AGAGACTGCGAGTAAACTAAAGATTG 59.191 38.462 0.00 0.00 0.00 2.67
587 955 6.926313 AGAGACTGCGAGTAAACTAAAGATT 58.074 36.000 0.00 0.00 0.00 2.40
593 961 6.171921 ACTTCTAGAGACTGCGAGTAAACTA 58.828 40.000 0.00 0.00 0.00 2.24
653 1021 6.834168 AAATCATAGTTGAACACCGGAATT 57.166 33.333 9.46 0.27 34.96 2.17
780 1157 6.868622 ACTAGCGAGAATTTGTCTTCTACAT 58.131 36.000 0.00 0.00 38.10 2.29
808 1185 2.304761 AGCGTCTTATTTTCCCAGGTCA 59.695 45.455 0.00 0.00 0.00 4.02
809 1186 2.937149 GAGCGTCTTATTTTCCCAGGTC 59.063 50.000 0.00 0.00 0.00 3.85
899 1277 1.065418 AGAAGTGTAAGGGCCAATCGG 60.065 52.381 6.18 0.00 0.00 4.18
900 1278 2.280628 GAGAAGTGTAAGGGCCAATCG 58.719 52.381 6.18 0.00 0.00 3.34
904 1282 1.440618 TTGGAGAAGTGTAAGGGCCA 58.559 50.000 6.18 0.00 0.00 5.36
932 1310 7.174599 CCTCAGCCCATTAAAATAGATCTTCTG 59.825 40.741 0.00 0.00 0.00 3.02
933 1311 7.147230 ACCTCAGCCCATTAAAATAGATCTTCT 60.147 37.037 0.00 0.00 0.00 2.85
934 1312 7.001073 ACCTCAGCCCATTAAAATAGATCTTC 58.999 38.462 0.00 0.00 0.00 2.87
941 1319 4.871871 TCCACCTCAGCCCATTAAAATA 57.128 40.909 0.00 0.00 0.00 1.40
985 1363 6.835174 ACTGACTCATTATTGATGTATGGCT 58.165 36.000 0.00 0.00 37.06 4.75
1054 1432 6.314400 GTGACTTCAGAGAGTACTGGTACTAG 59.686 46.154 12.61 4.44 45.63 2.57
1083 1461 7.419711 TGTCCTATACTCTGAAAAACTAGGG 57.580 40.000 0.00 0.00 0.00 3.53
1093 1471 8.996651 TCAATGTAAGATGTCCTATACTCTGA 57.003 34.615 0.00 0.00 0.00 3.27
1129 1507 5.221145 CGAATGAGGTGATAGAACTACAGCT 60.221 44.000 0.00 0.00 43.42 4.24
1132 1510 6.961360 ATCGAATGAGGTGATAGAACTACA 57.039 37.500 0.00 0.00 0.00 2.74
1159 1537 3.875727 GCTGACATATATGGCTGGCATAG 59.124 47.826 25.12 15.96 36.54 2.23
1164 1542 3.244665 TGGAAGCTGACATATATGGCTGG 60.245 47.826 22.70 14.98 36.54 4.85
1219 1597 3.790089 AGACAGTTTCCCTTTAGGTGG 57.210 47.619 0.00 0.00 36.75 4.61
1353 1731 4.219944 GGTTCTTGACCCAAGTTTATTCCC 59.780 45.833 6.59 0.00 43.06 3.97
1394 1772 8.242053 CAGAAATATCAATGGTTGCTGGATATC 58.758 37.037 0.00 0.00 31.76 1.63
1414 1792 7.596494 ACAATCACATTTCGTTGATCAGAAAT 58.404 30.769 14.18 14.18 44.91 2.17
1431 1809 2.223782 GCTTTGTTGGCTGACAATCACA 60.224 45.455 0.00 0.00 41.95 3.58
1440 1818 0.746063 TGTCTTGGCTTTGTTGGCTG 59.254 50.000 0.00 0.00 0.00 4.85
1530 1908 4.207165 CAGAACCTGAACTTCCCAGAAAA 58.793 43.478 0.00 0.00 32.44 2.29
1548 1926 3.307691 CCTTAAGCACAGATCCACCAGAA 60.308 47.826 0.00 0.00 0.00 3.02
1589 1967 3.893720 AGCAAATCACGAGCAGAAAAAG 58.106 40.909 0.00 0.00 0.00 2.27
1590 1968 3.565482 AGAGCAAATCACGAGCAGAAAAA 59.435 39.130 0.00 0.00 0.00 1.94
1595 1973 4.871993 AATTAGAGCAAATCACGAGCAG 57.128 40.909 0.00 0.00 0.00 4.24
1596 1974 6.763135 AGAATAATTAGAGCAAATCACGAGCA 59.237 34.615 0.00 0.00 0.00 4.26
1600 1978 8.818141 TCCTAGAATAATTAGAGCAAATCACG 57.182 34.615 0.00 0.00 0.00 4.35
1617 1995 7.234577 AGAGAAGACACTGAAAACTCCTAGAAT 59.765 37.037 0.00 0.00 0.00 2.40
1625 2003 6.180472 TGGAAAAGAGAAGACACTGAAAACT 58.820 36.000 0.00 0.00 0.00 2.66
1629 2007 6.039717 CCAAATGGAAAAGAGAAGACACTGAA 59.960 38.462 0.00 0.00 37.39 3.02
1633 2011 4.827284 TCCCAAATGGAAAAGAGAAGACAC 59.173 41.667 0.00 0.00 41.40 3.67
1635 2013 5.316987 TCTCCCAAATGGAAAAGAGAAGAC 58.683 41.667 0.00 0.00 44.57 3.01
1685 2132 9.421806 CAACAATATTATCTGAAAAAGGTTGCA 57.578 29.630 0.00 0.00 0.00 4.08
1686 2133 9.638239 TCAACAATATTATCTGAAAAAGGTTGC 57.362 29.630 0.00 0.00 32.93 4.17
1696 2143 8.956426 GGGACAAACTTCAACAATATTATCTGA 58.044 33.333 0.00 0.00 0.00 3.27
1697 2144 8.739039 TGGGACAAACTTCAACAATATTATCTG 58.261 33.333 0.00 0.00 31.92 2.90
1698 2145 8.739972 GTGGGACAAACTTCAACAATATTATCT 58.260 33.333 0.00 0.00 44.16 1.98
1714 2161 4.782019 TCATTAAGCATGTGGGACAAAC 57.218 40.909 0.00 0.00 44.16 2.93
1719 2166 4.947388 GGTAACTTCATTAAGCATGTGGGA 59.053 41.667 0.00 0.00 36.05 4.37
1720 2167 4.704540 TGGTAACTTCATTAAGCATGTGGG 59.295 41.667 0.00 0.00 36.05 4.61
1813 2260 2.033151 CCACGTTGAAAGAACTCGAACC 60.033 50.000 0.00 0.00 0.00 3.62
1815 2262 3.167921 TCCACGTTGAAAGAACTCGAA 57.832 42.857 0.00 0.00 0.00 3.71
1851 2298 7.332182 GGAGTAGTGTCTGAAGAAGGTAAATTG 59.668 40.741 0.00 0.00 0.00 2.32
1862 2309 4.202264 ACTTGGTTGGAGTAGTGTCTGAAG 60.202 45.833 0.00 0.00 0.00 3.02
1902 2349 0.540923 ACTTCTCATGGAGCTCAGGC 59.459 55.000 17.19 0.00 39.06 4.85
1932 2379 2.023673 CTTCCACCAAGCTTGTCAACA 58.976 47.619 24.35 5.34 0.00 3.33
2113 2561 4.181578 CAGAGGGAGTACAACAAATACCG 58.818 47.826 0.00 0.00 0.00 4.02
2130 2578 6.300354 ACGTCTTACAAAAATGAACAGAGG 57.700 37.500 0.00 0.00 0.00 3.69
2131 2579 7.908082 TGAAACGTCTTACAAAAATGAACAGAG 59.092 33.333 0.00 0.00 0.00 3.35
2132 2580 7.753659 TGAAACGTCTTACAAAAATGAACAGA 58.246 30.769 0.00 0.00 0.00 3.41
2133 2581 7.908082 TCTGAAACGTCTTACAAAAATGAACAG 59.092 33.333 0.00 0.00 0.00 3.16
2134 2582 7.694784 GTCTGAAACGTCTTACAAAAATGAACA 59.305 33.333 0.00 0.00 0.00 3.18
2135 2583 7.694784 TGTCTGAAACGTCTTACAAAAATGAAC 59.305 33.333 0.00 0.00 0.00 3.18
2136 2584 7.753659 TGTCTGAAACGTCTTACAAAAATGAA 58.246 30.769 0.00 0.00 0.00 2.57
2137 2585 7.310072 TGTCTGAAACGTCTTACAAAAATGA 57.690 32.000 0.00 0.00 0.00 2.57
2138 2586 8.560576 AATGTCTGAAACGTCTTACAAAAATG 57.439 30.769 0.00 0.00 0.00 2.32
2141 2589 9.710979 CTTAAATGTCTGAAACGTCTTACAAAA 57.289 29.630 0.00 0.00 0.00 2.44
2142 2590 9.100554 TCTTAAATGTCTGAAACGTCTTACAAA 57.899 29.630 0.00 0.00 0.00 2.83
2143 2591 8.545420 GTCTTAAATGTCTGAAACGTCTTACAA 58.455 33.333 0.00 0.00 0.00 2.41
2144 2592 7.707464 TGTCTTAAATGTCTGAAACGTCTTACA 59.293 33.333 0.00 0.00 0.00 2.41
2145 2593 8.068893 TGTCTTAAATGTCTGAAACGTCTTAC 57.931 34.615 0.00 0.00 0.00 2.34
2146 2594 8.545420 GTTGTCTTAAATGTCTGAAACGTCTTA 58.455 33.333 0.00 0.00 0.00 2.10
2147 2595 7.065324 TGTTGTCTTAAATGTCTGAAACGTCTT 59.935 33.333 0.00 0.00 0.00 3.01
2148 2596 6.537301 TGTTGTCTTAAATGTCTGAAACGTCT 59.463 34.615 0.00 0.00 0.00 4.18
2149 2597 6.627671 GTGTTGTCTTAAATGTCTGAAACGTC 59.372 38.462 0.00 0.00 0.00 4.34
2150 2598 6.457799 GGTGTTGTCTTAAATGTCTGAAACGT 60.458 38.462 0.00 0.00 0.00 3.99
2151 2599 5.907391 GGTGTTGTCTTAAATGTCTGAAACG 59.093 40.000 0.00 0.00 0.00 3.60
2152 2600 6.183360 TGGGTGTTGTCTTAAATGTCTGAAAC 60.183 38.462 0.00 0.00 0.00 2.78
2153 2601 5.888724 TGGGTGTTGTCTTAAATGTCTGAAA 59.111 36.000 0.00 0.00 0.00 2.69
2154 2602 5.441500 TGGGTGTTGTCTTAAATGTCTGAA 58.558 37.500 0.00 0.00 0.00 3.02
2155 2603 5.042463 TGGGTGTTGTCTTAAATGTCTGA 57.958 39.130 0.00 0.00 0.00 3.27
2156 2604 5.766150 TTGGGTGTTGTCTTAAATGTCTG 57.234 39.130 0.00 0.00 0.00 3.51
2157 2605 6.153680 TGTTTTGGGTGTTGTCTTAAATGTCT 59.846 34.615 0.00 0.00 0.00 3.41
2158 2606 6.334202 TGTTTTGGGTGTTGTCTTAAATGTC 58.666 36.000 0.00 0.00 0.00 3.06
2159 2607 6.071051 ACTGTTTTGGGTGTTGTCTTAAATGT 60.071 34.615 0.00 0.00 0.00 2.71
2160 2608 6.337356 ACTGTTTTGGGTGTTGTCTTAAATG 58.663 36.000 0.00 0.00 0.00 2.32
2161 2609 6.538945 ACTGTTTTGGGTGTTGTCTTAAAT 57.461 33.333 0.00 0.00 0.00 1.40
2162 2610 5.986501 ACTGTTTTGGGTGTTGTCTTAAA 57.013 34.783 0.00 0.00 0.00 1.52
2163 2611 5.986501 AACTGTTTTGGGTGTTGTCTTAA 57.013 34.783 0.00 0.00 0.00 1.85
2164 2612 5.986501 AAACTGTTTTGGGTGTTGTCTTA 57.013 34.783 0.00 0.00 0.00 2.10
2165 2613 4.882842 AAACTGTTTTGGGTGTTGTCTT 57.117 36.364 0.00 0.00 0.00 3.01
2166 2614 5.986501 TTAAACTGTTTTGGGTGTTGTCT 57.013 34.783 11.48 0.00 0.00 3.41
2167 2615 7.332182 TGAAATTAAACTGTTTTGGGTGTTGTC 59.668 33.333 11.48 0.00 0.00 3.18
2168 2616 7.162082 TGAAATTAAACTGTTTTGGGTGTTGT 58.838 30.769 11.48 0.00 0.00 3.32
2169 2617 7.602517 TGAAATTAAACTGTTTTGGGTGTTG 57.397 32.000 11.48 0.00 0.00 3.33
2170 2618 6.315144 GCTGAAATTAAACTGTTTTGGGTGTT 59.685 34.615 11.48 0.00 0.00 3.32
2171 2619 5.815222 GCTGAAATTAAACTGTTTTGGGTGT 59.185 36.000 11.48 0.00 0.00 4.16
2172 2620 6.018832 CAGCTGAAATTAAACTGTTTTGGGTG 60.019 38.462 8.42 6.40 0.00 4.61
2173 2621 6.048509 CAGCTGAAATTAAACTGTTTTGGGT 58.951 36.000 8.42 0.00 0.00 4.51
2174 2622 6.048509 ACAGCTGAAATTAAACTGTTTTGGG 58.951 36.000 23.35 0.00 38.38 4.12
2175 2623 6.980397 AGACAGCTGAAATTAAACTGTTTTGG 59.020 34.615 23.35 0.00 41.45 3.28
2176 2624 7.992180 AGACAGCTGAAATTAAACTGTTTTG 57.008 32.000 23.35 2.97 41.45 2.44
2180 2628 9.683069 CATTTTAGACAGCTGAAATTAAACTGT 57.317 29.630 23.35 0.00 43.93 3.55
2181 2629 9.683069 ACATTTTAGACAGCTGAAATTAAACTG 57.317 29.630 23.35 20.57 38.00 3.16
2182 2630 9.899226 GACATTTTAGACAGCTGAAATTAAACT 57.101 29.630 23.35 10.05 38.00 2.66
2183 2631 9.899226 AGACATTTTAGACAGCTGAAATTAAAC 57.101 29.630 23.35 6.80 38.00 2.01
2187 2635 9.066892 TGTAAGACATTTTAGACAGCTGAAATT 57.933 29.630 23.35 4.40 38.00 1.82
2188 2636 8.621532 TGTAAGACATTTTAGACAGCTGAAAT 57.378 30.769 23.35 12.84 39.92 2.17
2189 2637 8.445275 TTGTAAGACATTTTAGACAGCTGAAA 57.555 30.769 23.35 10.88 34.61 2.69
2190 2638 8.445275 TTTGTAAGACATTTTAGACAGCTGAA 57.555 30.769 23.35 3.60 0.00 3.02
2191 2639 8.445275 TTTTGTAAGACATTTTAGACAGCTGA 57.555 30.769 23.35 0.00 0.00 4.26
2192 2640 9.683069 ATTTTTGTAAGACATTTTAGACAGCTG 57.317 29.630 13.48 13.48 0.00 4.24
2193 2641 9.683069 CATTTTTGTAAGACATTTTAGACAGCT 57.317 29.630 0.00 0.00 0.00 4.24
2194 2642 9.677567 TCATTTTTGTAAGACATTTTAGACAGC 57.322 29.630 0.00 0.00 0.00 4.40
2201 2649 9.533253 CCTCTGTTCATTTTTGTAAGACATTTT 57.467 29.630 0.00 0.00 0.00 1.82
2202 2650 8.143835 CCCTCTGTTCATTTTTGTAAGACATTT 58.856 33.333 0.00 0.00 0.00 2.32
2203 2651 7.505585 TCCCTCTGTTCATTTTTGTAAGACATT 59.494 33.333 0.00 0.00 0.00 2.71
2204 2652 7.004086 TCCCTCTGTTCATTTTTGTAAGACAT 58.996 34.615 0.00 0.00 0.00 3.06
2205 2653 6.361433 TCCCTCTGTTCATTTTTGTAAGACA 58.639 36.000 0.00 0.00 0.00 3.41
2206 2654 6.486993 ACTCCCTCTGTTCATTTTTGTAAGAC 59.513 38.462 0.00 0.00 0.00 3.01
2207 2655 6.601332 ACTCCCTCTGTTCATTTTTGTAAGA 58.399 36.000 0.00 0.00 0.00 2.10
2208 2656 6.884280 ACTCCCTCTGTTCATTTTTGTAAG 57.116 37.500 0.00 0.00 0.00 2.34
2209 2657 6.430000 GCTACTCCCTCTGTTCATTTTTGTAA 59.570 38.462 0.00 0.00 0.00 2.41
2210 2658 5.938125 GCTACTCCCTCTGTTCATTTTTGTA 59.062 40.000 0.00 0.00 0.00 2.41
2211 2659 4.762251 GCTACTCCCTCTGTTCATTTTTGT 59.238 41.667 0.00 0.00 0.00 2.83
2212 2660 5.006386 AGCTACTCCCTCTGTTCATTTTTG 58.994 41.667 0.00 0.00 0.00 2.44
2213 2661 5.248380 AGCTACTCCCTCTGTTCATTTTT 57.752 39.130 0.00 0.00 0.00 1.94
2214 2662 4.917906 AGCTACTCCCTCTGTTCATTTT 57.082 40.909 0.00 0.00 0.00 1.82
2215 2663 4.917906 AAGCTACTCCCTCTGTTCATTT 57.082 40.909 0.00 0.00 0.00 2.32
2216 2664 4.917906 AAAGCTACTCCCTCTGTTCATT 57.082 40.909 0.00 0.00 0.00 2.57
2217 2665 4.917906 AAAAGCTACTCCCTCTGTTCAT 57.082 40.909 0.00 0.00 0.00 2.57
2218 2666 4.706842 AAAAAGCTACTCCCTCTGTTCA 57.293 40.909 0.00 0.00 0.00 3.18
2574 3032 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2575 3033 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2576 3034 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2582 3040 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
2583 3041 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
2584 3042 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
2585 3043 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2586 3044 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2587 3045 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2588 3046 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2601 3059 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
2602 3060 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
2603 3061 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
2609 3067 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
2610 3068 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
2611 3069 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
2612 3070 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
2613 3071 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
2614 3072 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
2615 3073 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
2616 3074 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
2617 3075 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
2618 3076 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
2619 3077 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
2620 3078 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
2621 3079 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
2622 3080 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
2623 3081 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
2624 3082 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2625 3083 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2626 3084 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2627 3085 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2628 3086 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2629 3087 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2630 3088 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2631 3089 0.616679 CCTACTCCCTCCGTCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
2632 3090 1.001248 CCTACTCCCTCCGTCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
2633 3091 1.294426 ATCCTACTCCCTCCGTCCCA 61.294 60.000 0.00 0.00 0.00 4.37
2634 3092 0.776176 TATCCTACTCCCTCCGTCCC 59.224 60.000 0.00 0.00 0.00 4.46
2635 3093 1.424684 AGTATCCTACTCCCTCCGTCC 59.575 57.143 0.00 0.00 32.47 4.79
2636 3094 2.955342 AGTATCCTACTCCCTCCGTC 57.045 55.000 0.00 0.00 32.47 4.79
2637 3095 2.512896 TGAAGTATCCTACTCCCTCCGT 59.487 50.000 0.00 0.00 38.26 4.69
2638 3096 3.150767 CTGAAGTATCCTACTCCCTCCG 58.849 54.545 0.00 0.00 38.26 4.63
2639 3097 4.187506 ACTGAAGTATCCTACTCCCTCC 57.812 50.000 0.00 0.00 38.26 4.30
2640 3098 5.999600 GTCTACTGAAGTATCCTACTCCCTC 59.000 48.000 0.00 0.00 38.26 4.30
2641 3099 5.673113 AGTCTACTGAAGTATCCTACTCCCT 59.327 44.000 0.00 0.00 38.26 4.20
2642 3100 5.944135 AGTCTACTGAAGTATCCTACTCCC 58.056 45.833 0.00 0.00 38.26 4.30
2643 3101 6.829811 ACAAGTCTACTGAAGTATCCTACTCC 59.170 42.308 0.00 0.00 38.26 3.85
2644 3102 7.868906 ACAAGTCTACTGAAGTATCCTACTC 57.131 40.000 0.00 0.00 38.26 2.59
2645 3103 9.176460 GTAACAAGTCTACTGAAGTATCCTACT 57.824 37.037 0.00 0.00 41.73 2.57
2646 3104 9.176460 AGTAACAAGTCTACTGAAGTATCCTAC 57.824 37.037 0.00 0.00 0.00 3.18
2940 3443 7.459394 TTTACGTCAAGACAGTCTTTACAAG 57.541 36.000 22.07 12.37 33.78 3.16
3036 3622 6.617953 GCCTTTGAAATACTGTACGTCTGAAC 60.618 42.308 0.00 0.00 0.00 3.18
3076 3662 0.471022 TACTGTGGACTGGGCACTGA 60.471 55.000 0.00 0.00 0.00 3.41
3079 3665 1.202770 ACTTTACTGTGGACTGGGCAC 60.203 52.381 0.00 0.00 0.00 5.01
3085 3671 4.081087 ACAGACACAACTTTACTGTGGACT 60.081 41.667 7.77 4.14 46.89 3.85
3105 3726 1.000283 AGAACTCTGGAACTCGCACAG 60.000 52.381 0.00 0.00 0.00 3.66
3164 3785 3.259374 TCTGAGTTCTTAGCCCTTCACTG 59.741 47.826 0.00 0.00 0.00 3.66
3240 3865 2.159014 ACACGTCTGTTCTTGCCAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
3253 3878 3.032017 AGATGGAAGTTCACACGTCTG 57.968 47.619 5.01 0.00 32.39 3.51
3256 3881 7.159372 ACTAAAATAGATGGAAGTTCACACGT 58.841 34.615 5.01 0.00 0.00 4.49
3284 3910 6.183361 GGGGGAAAAATAAAAGAGAACCCAAA 60.183 38.462 0.00 0.00 36.85 3.28
3306 3932 1.492133 TTGGAGCTGTGAAGAGGGGG 61.492 60.000 0.00 0.00 0.00 5.40
3307 3933 0.401738 TTTGGAGCTGTGAAGAGGGG 59.598 55.000 0.00 0.00 0.00 4.79
3314 3942 2.816087 GCATCTTTCTTTGGAGCTGTGA 59.184 45.455 0.00 0.00 0.00 3.58
3436 4064 1.202639 TGATCCACAGACTGCGTGTTT 60.203 47.619 1.25 0.00 32.26 2.83
3499 4127 2.781681 TTTCCGGATGGTTCTCTTCC 57.218 50.000 4.15 0.00 36.61 3.46
3504 4132 3.010138 TCATTCCTTTTCCGGATGGTTCT 59.990 43.478 4.15 0.00 36.30 3.01
3507 4135 3.449746 TTCATTCCTTTTCCGGATGGT 57.550 42.857 4.15 0.00 36.30 3.55
3528 4156 3.555547 CGATTCCGAGTAAATGATGTGCA 59.444 43.478 0.00 0.00 38.22 4.57
3532 4160 4.794248 TTGCGATTCCGAGTAAATGATG 57.206 40.909 0.00 0.00 38.22 3.07
3560 4191 5.843673 ACTCTTTCGATCTAATCAGCTCA 57.156 39.130 0.00 0.00 0.00 4.26
3595 4230 7.280428 CAGCAATTAGATTAGGCTATGATCCTG 59.720 40.741 0.00 0.00 35.21 3.86
3618 4253 4.067896 TGAAAAAGATCACCTGAGACAGC 58.932 43.478 0.00 0.00 0.00 4.40
3619 4254 4.694509 CCTGAAAAAGATCACCTGAGACAG 59.305 45.833 0.00 0.00 0.00 3.51
3626 4261 3.152341 CAGTGCCTGAAAAAGATCACCT 58.848 45.455 0.00 0.00 32.44 4.00
3670 4305 5.569059 CGCTCCAAATCAAAAATCTGTGTAC 59.431 40.000 0.00 0.00 0.00 2.90
3692 4327 3.753842 TGAAGAAATAAATGTTCGGCGC 58.246 40.909 0.00 0.00 0.00 6.53
3742 4378 2.348872 GCTGCCATCGACGAAACATATG 60.349 50.000 0.00 0.00 0.00 1.78
3743 4379 1.867233 GCTGCCATCGACGAAACATAT 59.133 47.619 0.00 0.00 0.00 1.78
3779 4415 1.760029 TCAAAGGTGAAAAACAGGCCC 59.240 47.619 0.00 0.00 0.00 5.80
3824 4460 7.676947 TGTAGAGAGGTAAATACAACAAAGCT 58.323 34.615 0.00 0.00 0.00 3.74
3847 4483 2.114616 CAGGGAGATGTTAGGAGCTGT 58.885 52.381 0.00 0.00 0.00 4.40
3856 4492 3.412386 GTTTGCAGTACAGGGAGATGTT 58.588 45.455 0.00 0.00 34.56 2.71
3919 4555 2.202851 CCGTGAGCAGCAGCCTAG 60.203 66.667 0.00 0.00 43.56 3.02
3936 4602 2.358737 CGTTCCAGACAGGCACCC 60.359 66.667 0.00 0.00 37.29 4.61
3937 4603 3.050275 GCGTTCCAGACAGGCACC 61.050 66.667 0.00 0.00 37.29 5.01
3938 4604 1.672356 ATGCGTTCCAGACAGGCAC 60.672 57.895 0.00 0.00 36.31 5.01
3939 4605 1.672030 CATGCGTTCCAGACAGGCA 60.672 57.895 0.00 0.00 37.29 4.75
4057 4728 4.063689 GCCTCATCTCTGTGTCCAATATG 58.936 47.826 0.00 0.00 0.00 1.78
4059 4730 3.106827 TGCCTCATCTCTGTGTCCAATA 58.893 45.455 0.00 0.00 0.00 1.90
4273 4964 4.846137 GTGTTTCACGCTGTATGTTTCATC 59.154 41.667 0.00 0.00 0.00 2.92
4275 4966 3.623510 TGTGTTTCACGCTGTATGTTTCA 59.376 39.130 0.00 0.00 37.14 2.69
4276 4967 4.203950 TGTGTTTCACGCTGTATGTTTC 57.796 40.909 0.00 0.00 37.14 2.78
4287 4978 4.506288 TGTGATCTACAACTGTGTTTCACG 59.494 41.667 12.30 0.00 40.36 4.35
4299 4990 5.221641 ACTGCTAACAAGGTGTGATCTACAA 60.222 40.000 0.00 0.00 41.89 2.41
4300 4991 4.283467 ACTGCTAACAAGGTGTGATCTACA 59.717 41.667 0.00 0.00 36.82 2.74
4301 4992 4.822026 ACTGCTAACAAGGTGTGATCTAC 58.178 43.478 0.00 0.00 0.00 2.59
4302 4993 5.237815 CAACTGCTAACAAGGTGTGATCTA 58.762 41.667 0.00 0.00 0.00 1.98
4303 4994 4.067896 CAACTGCTAACAAGGTGTGATCT 58.932 43.478 0.00 0.00 0.00 2.75
4304 4995 3.365364 GCAACTGCTAACAAGGTGTGATC 60.365 47.826 0.00 0.00 38.21 2.92
4305 4996 2.554032 GCAACTGCTAACAAGGTGTGAT 59.446 45.455 0.00 0.00 38.21 3.06
4307 4998 1.675483 TGCAACTGCTAACAAGGTGTG 59.325 47.619 2.95 0.00 42.66 3.82
4308 4999 1.949525 CTGCAACTGCTAACAAGGTGT 59.050 47.619 2.95 0.00 42.66 4.16
4309 5000 2.221169 TCTGCAACTGCTAACAAGGTG 58.779 47.619 2.95 0.00 42.66 4.00
4310 5001 2.638480 TCTGCAACTGCTAACAAGGT 57.362 45.000 2.95 0.00 42.66 3.50
4311 5002 2.351157 GCTTCTGCAACTGCTAACAAGG 60.351 50.000 2.95 0.00 42.66 3.61
4312 5003 2.926165 GCTTCTGCAACTGCTAACAAG 58.074 47.619 2.95 1.64 42.66 3.16
4325 5016 1.716826 GCTGCCATCTCTGCTTCTGC 61.717 60.000 0.00 0.00 40.20 4.26
4326 5017 1.429927 CGCTGCCATCTCTGCTTCTG 61.430 60.000 0.00 0.00 0.00 3.02
4327 5018 1.153409 CGCTGCCATCTCTGCTTCT 60.153 57.895 0.00 0.00 0.00 2.85
4329 5020 1.153409 CTCGCTGCCATCTCTGCTT 60.153 57.895 0.00 0.00 0.00 3.91
4330 5021 2.500165 CTCGCTGCCATCTCTGCT 59.500 61.111 0.00 0.00 0.00 4.24
4332 5023 2.960659 CGCTCGCTGCCATCTCTG 60.961 66.667 0.00 0.00 38.78 3.35
4333 5024 3.136345 CTCGCTCGCTGCCATCTCT 62.136 63.158 0.00 0.00 38.78 3.10
4335 5026 4.887987 GCTCGCTCGCTGCCATCT 62.888 66.667 0.00 0.00 38.78 2.90
4348 5039 1.983972 AGAGTAAGCTCAAACGCTCG 58.016 50.000 0.00 0.00 44.00 5.03
4349 5040 3.060602 ACAAGAGTAAGCTCAAACGCTC 58.939 45.455 0.00 0.00 44.00 5.03
4352 5043 3.121328 CGTCACAAGAGTAAGCTCAAACG 60.121 47.826 0.00 0.00 44.00 3.60
4354 5045 4.049186 GTCGTCACAAGAGTAAGCTCAAA 58.951 43.478 0.00 0.00 44.00 2.69
4355 5046 3.639538 GTCGTCACAAGAGTAAGCTCAA 58.360 45.455 0.00 0.00 44.00 3.02
4356 5047 2.350484 CGTCGTCACAAGAGTAAGCTCA 60.350 50.000 0.00 0.00 44.00 4.26
4357 5048 2.243407 CGTCGTCACAAGAGTAAGCTC 58.757 52.381 0.00 0.00 41.94 4.09
4358 5049 1.068472 CCGTCGTCACAAGAGTAAGCT 60.068 52.381 0.00 0.00 0.00 3.74
4421 5112 3.502455 CCGGGATGACGACGACGA 61.502 66.667 15.32 0.00 42.66 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.