Multiple sequence alignment - TraesCS6A01G385300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G385300 chr6A 100.000 3091 0 0 1 3091 603137115 603140205 0.000000e+00 5709
1 TraesCS6A01G385300 chr6B 88.000 1625 140 27 744 2340 693947120 693948717 0.000000e+00 1869
2 TraesCS6A01G385300 chr6B 87.350 1083 102 23 1273 2340 694104415 694105477 0.000000e+00 1208
3 TraesCS6A01G385300 chr6B 84.402 686 81 14 2331 2998 694105501 694106178 0.000000e+00 651
4 TraesCS6A01G385300 chr6B 83.559 590 48 22 709 1283 694103680 694104235 9.890000e-140 507
5 TraesCS6A01G385300 chr6B 90.614 277 16 3 727 1003 694101349 694101615 2.930000e-95 359
6 TraesCS6A01G385300 chr6B 92.929 198 12 2 440 635 4952993 4953190 1.400000e-73 287
7 TraesCS6A01G385300 chr6B 92.929 198 12 2 440 635 4975375 4975572 1.400000e-73 287
8 TraesCS6A01G385300 chr6B 88.341 223 14 7 1016 1229 694103440 694103659 1.100000e-64 257
9 TraesCS6A01G385300 chr6B 89.865 148 15 0 2639 2786 694003353 694003500 1.130000e-44 191
10 TraesCS6A01G385300 chr6D 90.130 1074 52 25 709 1770 456431643 456432674 0.000000e+00 1347
11 TraesCS6A01G385300 chr6D 94.098 881 45 6 2212 3089 456451037 456451913 0.000000e+00 1332
12 TraesCS6A01G385300 chr6D 94.678 451 23 1 1766 2216 456433050 456433499 0.000000e+00 699
13 TraesCS6A01G385300 chr6D 84.532 278 27 8 157 428 456431260 456431527 8.500000e-66 261
14 TraesCS6A01G385300 chr1A 94.271 192 11 0 444 635 498181619 498181428 8.380000e-76 294
15 TraesCS6A01G385300 chr5D 90.741 216 17 3 420 633 294416067 294416281 5.040000e-73 285
16 TraesCS6A01G385300 chr7B 92.462 199 13 2 439 635 186334609 186334411 1.810000e-72 283
17 TraesCS6A01G385300 chr1B 92.462 199 13 2 439 635 538625627 538625429 1.810000e-72 283
18 TraesCS6A01G385300 chr3A 90.909 209 18 1 427 635 438910629 438910422 2.350000e-71 279
19 TraesCS6A01G385300 chr3D 90.141 213 19 2 423 634 306029224 306029013 3.040000e-70 276
20 TraesCS6A01G385300 chr1D 90.187 214 18 3 424 635 76971216 76971004 3.040000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G385300 chr6A 603137115 603140205 3090 False 5709.0 5709 100.0000 1 3091 1 chr6A.!!$F1 3090
1 TraesCS6A01G385300 chr6B 693947120 693948717 1597 False 1869.0 1869 88.0000 744 2340 1 chr6B.!!$F3 1596
2 TraesCS6A01G385300 chr6B 694101349 694106178 4829 False 596.4 1208 86.8532 709 2998 5 chr6B.!!$F5 2289
3 TraesCS6A01G385300 chr6D 456451037 456451913 876 False 1332.0 1332 94.0980 2212 3089 1 chr6D.!!$F1 877
4 TraesCS6A01G385300 chr6D 456431260 456433499 2239 False 769.0 1347 89.7800 157 2216 3 chr6D.!!$F2 2059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 692 0.248458 GTTTTCACAGTGCGTGGGTG 60.248 55.000 0.0 0.0 46.36 4.61 F
706 717 1.135689 GGATCGCACGCAAAAAGATGT 60.136 47.619 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 4870 0.459899 TGAGCATCGTAGGCATCGTT 59.540 50.0 0.00 0.00 38.61 3.85 R
2341 5403 0.820891 GTATCCGCGGTCCTAGTCCA 60.821 60.0 27.15 1.58 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.660789 GCCATGTAGGATTTTTGCTGAT 57.339 40.909 0.00 0.00 41.22 2.90
22 23 5.772825 GCCATGTAGGATTTTTGCTGATA 57.227 39.130 0.00 0.00 41.22 2.15
23 24 6.147864 GCCATGTAGGATTTTTGCTGATAA 57.852 37.500 0.00 0.00 41.22 1.75
24 25 6.211515 GCCATGTAGGATTTTTGCTGATAAG 58.788 40.000 0.00 0.00 41.22 1.73
25 26 6.039717 GCCATGTAGGATTTTTGCTGATAAGA 59.960 38.462 0.00 0.00 41.22 2.10
26 27 7.416664 GCCATGTAGGATTTTTGCTGATAAGAA 60.417 37.037 0.00 0.00 41.22 2.52
27 28 8.636213 CCATGTAGGATTTTTGCTGATAAGAAT 58.364 33.333 0.00 0.00 41.22 2.40
30 31 9.859427 TGTAGGATTTTTGCTGATAAGAATTTG 57.141 29.630 0.00 0.00 0.00 2.32
31 32 9.305925 GTAGGATTTTTGCTGATAAGAATTTGG 57.694 33.333 0.00 0.00 0.00 3.28
32 33 8.137745 AGGATTTTTGCTGATAAGAATTTGGA 57.862 30.769 0.00 0.00 0.00 3.53
33 34 8.596293 AGGATTTTTGCTGATAAGAATTTGGAA 58.404 29.630 0.00 0.00 0.00 3.53
34 35 8.876790 GGATTTTTGCTGATAAGAATTTGGAAG 58.123 33.333 0.00 0.00 0.00 3.46
35 36 9.643693 GATTTTTGCTGATAAGAATTTGGAAGA 57.356 29.630 0.00 0.00 0.00 2.87
41 42 9.241919 TGCTGATAAGAATTTGGAAGAATAACA 57.758 29.630 0.00 0.00 0.00 2.41
42 43 9.508567 GCTGATAAGAATTTGGAAGAATAACAC 57.491 33.333 0.00 0.00 0.00 3.32
93 94 8.862325 AAAATGTCTCAAGATAATGTGTACCA 57.138 30.769 0.00 0.00 0.00 3.25
94 95 9.466497 AAAATGTCTCAAGATAATGTGTACCAT 57.534 29.630 0.00 0.00 34.36 3.55
95 96 8.668510 AATGTCTCAAGATAATGTGTACCATC 57.331 34.615 0.00 0.00 31.75 3.51
96 97 7.423844 TGTCTCAAGATAATGTGTACCATCT 57.576 36.000 0.00 0.00 31.75 2.90
97 98 7.851228 TGTCTCAAGATAATGTGTACCATCTT 58.149 34.615 0.00 0.00 38.06 2.40
98 99 8.321353 TGTCTCAAGATAATGTGTACCATCTTT 58.679 33.333 0.00 0.00 35.96 2.52
99 100 8.607459 GTCTCAAGATAATGTGTACCATCTTTG 58.393 37.037 0.00 0.00 35.96 2.77
112 113 4.579454 CCATCTTTGGCACATAGGAATG 57.421 45.455 0.00 0.00 39.30 2.67
113 114 3.956199 CCATCTTTGGCACATAGGAATGT 59.044 43.478 0.00 0.00 39.47 2.71
114 115 4.403432 CCATCTTTGGCACATAGGAATGTT 59.597 41.667 0.00 0.00 38.55 2.71
115 116 5.450965 CCATCTTTGGCACATAGGAATGTTC 60.451 44.000 0.00 0.00 38.55 3.18
116 117 4.922206 TCTTTGGCACATAGGAATGTTCT 58.078 39.130 0.00 0.00 44.07 3.01
117 118 4.701651 TCTTTGGCACATAGGAATGTTCTG 59.298 41.667 0.00 0.00 44.07 3.02
118 119 3.998913 TGGCACATAGGAATGTTCTGA 57.001 42.857 0.00 0.00 44.07 3.27
119 120 4.508551 TGGCACATAGGAATGTTCTGAT 57.491 40.909 0.00 0.00 44.07 2.90
120 121 5.628797 TGGCACATAGGAATGTTCTGATA 57.371 39.130 0.00 0.00 44.07 2.15
121 122 6.000246 TGGCACATAGGAATGTTCTGATAA 58.000 37.500 0.00 0.00 44.07 1.75
122 123 6.422333 TGGCACATAGGAATGTTCTGATAAA 58.578 36.000 0.00 0.00 44.07 1.40
123 124 6.889177 TGGCACATAGGAATGTTCTGATAAAA 59.111 34.615 0.00 0.00 44.07 1.52
124 125 7.067372 TGGCACATAGGAATGTTCTGATAAAAG 59.933 37.037 0.00 0.00 44.07 2.27
125 126 7.283127 GGCACATAGGAATGTTCTGATAAAAGA 59.717 37.037 0.00 0.00 44.07 2.52
126 127 8.677300 GCACATAGGAATGTTCTGATAAAAGAA 58.323 33.333 0.00 0.00 44.07 2.52
131 132 8.924511 AGGAATGTTCTGATAAAAGAAAGACA 57.075 30.769 0.00 0.00 37.90 3.41
132 133 9.525826 AGGAATGTTCTGATAAAAGAAAGACAT 57.474 29.630 0.00 0.00 37.90 3.06
137 138 8.721478 TGTTCTGATAAAAGAAAGACATAGTGC 58.279 33.333 0.00 0.00 37.90 4.40
138 139 8.940952 GTTCTGATAAAAGAAAGACATAGTGCT 58.059 33.333 0.00 0.00 37.90 4.40
139 140 9.507329 TTCTGATAAAAGAAAGACATAGTGCTT 57.493 29.630 0.00 0.00 33.25 3.91
142 143 9.944376 TGATAAAAGAAAGACATAGTGCTTAGT 57.056 29.630 0.00 0.00 0.00 2.24
144 145 9.726438 ATAAAAGAAAGACATAGTGCTTAGTGT 57.274 29.630 0.00 0.00 0.00 3.55
145 146 8.451908 AAAAGAAAGACATAGTGCTTAGTGTT 57.548 30.769 0.00 0.00 0.00 3.32
146 147 8.451908 AAAGAAAGACATAGTGCTTAGTGTTT 57.548 30.769 0.00 0.00 31.29 2.83
147 148 8.451908 AAGAAAGACATAGTGCTTAGTGTTTT 57.548 30.769 0.00 0.00 29.17 2.43
148 149 8.089115 AGAAAGACATAGTGCTTAGTGTTTTC 57.911 34.615 0.00 0.00 29.17 2.29
149 150 6.803154 AAGACATAGTGCTTAGTGTTTTCC 57.197 37.500 0.00 0.00 0.00 3.13
150 151 6.115448 AGACATAGTGCTTAGTGTTTTCCT 57.885 37.500 0.00 0.00 0.00 3.36
151 152 7.241042 AGACATAGTGCTTAGTGTTTTCCTA 57.759 36.000 0.00 0.00 0.00 2.94
152 153 7.097834 AGACATAGTGCTTAGTGTTTTCCTAC 58.902 38.462 0.00 0.00 0.00 3.18
153 154 7.005709 ACATAGTGCTTAGTGTTTTCCTACT 57.994 36.000 0.00 0.00 0.00 2.57
154 155 7.450903 ACATAGTGCTTAGTGTTTTCCTACTT 58.549 34.615 0.00 0.00 0.00 2.24
155 156 7.603024 ACATAGTGCTTAGTGTTTTCCTACTTC 59.397 37.037 0.00 0.00 0.00 3.01
156 157 6.176014 AGTGCTTAGTGTTTTCCTACTTCT 57.824 37.500 0.00 0.00 0.00 2.85
157 158 6.592870 AGTGCTTAGTGTTTTCCTACTTCTT 58.407 36.000 0.00 0.00 0.00 2.52
158 159 7.054751 AGTGCTTAGTGTTTTCCTACTTCTTT 58.945 34.615 0.00 0.00 0.00 2.52
159 160 8.208903 AGTGCTTAGTGTTTTCCTACTTCTTTA 58.791 33.333 0.00 0.00 0.00 1.85
160 161 8.833493 GTGCTTAGTGTTTTCCTACTTCTTTAA 58.167 33.333 0.00 0.00 0.00 1.52
195 196 1.513158 CAGGTGCGTCTAGACCCAG 59.487 63.158 17.23 6.04 32.03 4.45
196 197 1.682684 AGGTGCGTCTAGACCCAGG 60.683 63.158 17.23 4.29 32.03 4.45
199 200 1.681327 TGCGTCTAGACCCAGGACC 60.681 63.158 17.23 0.00 0.00 4.46
200 201 2.424733 GCGTCTAGACCCAGGACCC 61.425 68.421 17.23 0.00 0.00 4.46
201 202 1.000019 CGTCTAGACCCAGGACCCA 60.000 63.158 17.23 0.00 0.00 4.51
202 203 0.613853 CGTCTAGACCCAGGACCCAA 60.614 60.000 17.23 0.00 0.00 4.12
203 204 1.652947 GTCTAGACCCAGGACCCAAA 58.347 55.000 12.13 0.00 0.00 3.28
204 205 1.555533 GTCTAGACCCAGGACCCAAAG 59.444 57.143 12.13 0.00 0.00 2.77
206 207 2.045885 TCTAGACCCAGGACCCAAAGAT 59.954 50.000 0.00 0.00 0.00 2.40
207 208 1.290134 AGACCCAGGACCCAAAGATC 58.710 55.000 0.00 0.00 0.00 2.75
248 252 9.727627 GCACTCTTTCTGATATCAAAATTTAGG 57.272 33.333 6.90 0.00 0.00 2.69
263 267 7.385752 TCAAAATTTAGGAAAGAGCAAAGCATG 59.614 33.333 0.00 0.00 0.00 4.06
265 269 5.789643 TTTAGGAAAGAGCAAAGCATGTT 57.210 34.783 0.00 0.00 0.00 2.71
270 274 4.810491 GGAAAGAGCAAAGCATGTTTTTCA 59.190 37.500 4.61 0.00 31.89 2.69
273 277 4.563061 AGAGCAAAGCATGTTTTTCATCC 58.437 39.130 4.61 0.00 34.09 3.51
281 285 6.272822 AGCATGTTTTTCATCCCTAAACTC 57.727 37.500 0.00 0.00 34.09 3.01
284 288 6.753744 GCATGTTTTTCATCCCTAAACTCATC 59.246 38.462 0.00 0.00 34.09 2.92
289 293 3.572642 TCATCCCTAAACTCATCGGCTA 58.427 45.455 0.00 0.00 0.00 3.93
293 297 2.808543 CCCTAAACTCATCGGCTAATGC 59.191 50.000 0.00 0.00 38.76 3.56
294 298 3.466836 CCTAAACTCATCGGCTAATGCA 58.533 45.455 0.00 0.00 41.91 3.96
295 299 3.496130 CCTAAACTCATCGGCTAATGCAG 59.504 47.826 0.00 0.00 41.91 4.41
296 300 2.988010 AACTCATCGGCTAATGCAGA 57.012 45.000 0.00 0.00 46.42 4.26
301 305 3.384816 TCGGCTAATGCAGATGTGG 57.615 52.632 0.00 0.00 38.41 4.17
302 306 0.541392 TCGGCTAATGCAGATGTGGT 59.459 50.000 0.00 0.00 38.41 4.16
307 311 2.954318 GCTAATGCAGATGTGGTCCATT 59.046 45.455 0.00 0.00 39.41 3.16
308 312 3.243301 GCTAATGCAGATGTGGTCCATTG 60.243 47.826 0.00 0.00 39.41 2.82
323 327 4.202202 GGTCCATTGATTTCACAACCACAA 60.202 41.667 0.00 0.00 32.50 3.33
342 346 3.821033 ACAAAGGCTGTACCATGAACTTC 59.179 43.478 0.00 0.00 43.14 3.01
360 364 1.033574 TCCAAAAACCGGACGCATTT 58.966 45.000 9.46 0.00 0.00 2.32
361 365 1.001158 TCCAAAAACCGGACGCATTTC 60.001 47.619 9.46 0.00 0.00 2.17
385 389 1.067283 CCCCATTTTGCATACAACGCA 60.067 47.619 0.00 0.00 34.87 5.24
386 390 2.418471 CCCCATTTTGCATACAACGCAT 60.418 45.455 0.00 0.00 39.58 4.73
387 391 3.260740 CCCATTTTGCATACAACGCATT 58.739 40.909 0.00 0.00 39.58 3.56
388 392 4.428209 CCCATTTTGCATACAACGCATTA 58.572 39.130 0.00 0.00 39.58 1.90
400 404 3.193267 ACAACGCATTATGCACCAGAAAT 59.807 39.130 17.75 0.00 45.36 2.17
402 406 3.282021 ACGCATTATGCACCAGAAATCT 58.718 40.909 17.75 0.00 45.36 2.40
428 434 6.358178 TGAACAACTAGGTCAAAACATGGTA 58.642 36.000 0.00 0.00 42.11 3.25
429 435 6.261381 TGAACAACTAGGTCAAAACATGGTAC 59.739 38.462 0.00 0.00 42.11 3.34
430 436 5.067954 ACAACTAGGTCAAAACATGGTACC 58.932 41.667 4.43 4.43 30.21 3.34
431 437 4.296621 ACTAGGTCAAAACATGGTACCC 57.703 45.455 10.07 0.00 28.44 3.69
474 480 9.142014 AGTCTGCATATAAGATCTAGTCAAAGT 57.858 33.333 0.00 0.00 0.00 2.66
475 481 9.405587 GTCTGCATATAAGATCTAGTCAAAGTC 57.594 37.037 0.00 0.00 0.00 3.01
476 482 9.136323 TCTGCATATAAGATCTAGTCAAAGTCA 57.864 33.333 0.00 0.00 0.00 3.41
477 483 9.755804 CTGCATATAAGATCTAGTCAAAGTCAA 57.244 33.333 0.00 0.00 0.00 3.18
679 685 3.124297 CAGCTAGCTAGTTTTCACAGTGC 59.876 47.826 18.86 3.96 0.00 4.40
680 686 2.092838 GCTAGCTAGTTTTCACAGTGCG 59.907 50.000 21.62 0.00 0.00 5.34
684 690 1.531149 CTAGTTTTCACAGTGCGTGGG 59.469 52.381 0.00 0.00 46.36 4.61
685 691 0.393808 AGTTTTCACAGTGCGTGGGT 60.394 50.000 0.00 0.00 46.36 4.51
686 692 0.248458 GTTTTCACAGTGCGTGGGTG 60.248 55.000 0.00 0.00 46.36 4.61
687 693 1.380403 TTTTCACAGTGCGTGGGTGG 61.380 55.000 0.00 0.00 46.36 4.61
689 695 2.032528 CACAGTGCGTGGGTGGAT 59.967 61.111 0.00 0.00 42.34 3.41
706 717 1.135689 GGATCGCACGCAAAAAGATGT 60.136 47.619 0.00 0.00 0.00 3.06
710 770 2.115595 CGCACGCAAAAAGATGTTTCA 58.884 42.857 0.00 0.00 0.00 2.69
804 865 4.078516 CTCCCCAACCGACGACCC 62.079 72.222 0.00 0.00 0.00 4.46
963 1030 1.889170 TCGGATCGAGCTTGCAGATAT 59.111 47.619 0.00 0.00 0.00 1.63
973 1040 7.433680 TCGAGCTTGCAGATATCAGTTTATAA 58.566 34.615 5.32 0.00 0.00 0.98
982 1049 8.131100 GCAGATATCAGTTTATAAAAGCAGCAA 58.869 33.333 5.32 0.00 0.00 3.91
1077 2957 2.606272 CGGCGGAACCAAAAGTATAGTC 59.394 50.000 0.00 0.00 39.03 2.59
1117 3001 3.451894 GGCAATGGCTTCACCGGG 61.452 66.667 6.32 0.00 43.94 5.73
1118 3002 3.451894 GCAATGGCTTCACCGGGG 61.452 66.667 6.32 0.00 43.94 5.73
1119 3003 2.755469 CAATGGCTTCACCGGGGG 60.755 66.667 2.42 0.00 43.94 5.40
1120 3004 4.759205 AATGGCTTCACCGGGGGC 62.759 66.667 2.42 0.00 43.94 5.80
1229 3668 3.562182 TCACAGGGTTTTCCTTTTCCTC 58.438 45.455 0.00 0.00 45.47 3.71
1231 3670 1.886542 CAGGGTTTTCCTTTTCCTCCG 59.113 52.381 0.00 0.00 45.47 4.63
1253 3692 6.720288 TCCGGAGAATTAATTTGTGGGTTTTA 59.280 34.615 0.00 0.00 0.00 1.52
1263 3702 9.720769 TTAATTTGTGGGTTTTAACTTTTGACA 57.279 25.926 0.00 0.00 0.00 3.58
1385 4017 2.888863 CGAGGTGGGAGCTCAGAC 59.111 66.667 17.19 10.83 42.53 3.51
1396 4028 2.775856 GCTCAGACGGCCGAGATCA 61.776 63.158 35.90 10.33 0.00 2.92
1429 4061 2.807045 CTGTGACGGCTGCGAGAC 60.807 66.667 0.00 0.00 0.00 3.36
1537 4172 6.603095 ACGCTTGATTCATTACTGAAAGAAC 58.397 36.000 0.00 0.00 44.29 3.01
1697 4334 2.470140 CGGTGTTTTCTTCGATCGAACG 60.470 50.000 25.96 19.98 0.00 3.95
1703 4340 2.257974 TCTTCGATCGAACGGTTCTG 57.742 50.000 25.96 14.57 0.00 3.02
1704 4341 1.808343 TCTTCGATCGAACGGTTCTGA 59.192 47.619 25.96 16.57 0.00 3.27
1705 4342 2.227149 TCTTCGATCGAACGGTTCTGAA 59.773 45.455 25.96 14.09 0.00 3.02
1706 4343 2.933495 TCGATCGAACGGTTCTGAAT 57.067 45.000 16.99 9.12 0.00 2.57
1735 4372 8.175716 GCGTTGACTTAGAAATAGTAGCATTTT 58.824 33.333 0.00 0.00 0.00 1.82
1743 4380 6.640518 AGAAATAGTAGCATTTTCTCGGTCA 58.359 36.000 0.00 0.00 35.36 4.02
1765 4402 5.298276 TCACATGAGAAGTAACAAAACCACC 59.702 40.000 0.00 0.00 0.00 4.61
1770 4407 5.818857 TGAGAAGTAACAAAACCACCAGTAC 59.181 40.000 0.00 0.00 0.00 2.73
1791 4808 7.688167 CAGTACTTTATACATGCTTCGTTGTTG 59.312 37.037 0.00 0.00 0.00 3.33
1792 4809 6.554334 ACTTTATACATGCTTCGTTGTTGT 57.446 33.333 0.00 0.00 0.00 3.32
1849 4866 1.217057 ACCACAGGGGGCAAGATCAT 61.217 55.000 0.00 0.00 42.91 2.45
1853 4870 0.256752 CAGGGGGCAAGATCATGACA 59.743 55.000 6.07 0.00 0.00 3.58
1864 4881 3.722147 AGATCATGACAACGATGCCTAC 58.278 45.455 0.00 0.00 0.00 3.18
1909 4926 0.610174 TGCCAAGAGCTGACGAAGAT 59.390 50.000 0.00 0.00 44.23 2.40
2004 5024 1.191535 CCACCCGTATCCAGAGTTCA 58.808 55.000 0.00 0.00 0.00 3.18
2303 5328 4.211374 GTGTTTTCGCTCTCAATGTACACT 59.789 41.667 0.00 0.00 32.75 3.55
2310 5339 6.447162 TCGCTCTCAATGTACACTATAATGG 58.553 40.000 0.00 0.00 0.00 3.16
2311 5340 5.635280 CGCTCTCAATGTACACTATAATGGG 59.365 44.000 0.00 0.00 0.00 4.00
2341 5403 2.002586 GTGCACATGATACAAGCTCGT 58.997 47.619 13.17 0.00 0.00 4.18
2487 5553 6.147985 GTCTCATATATTTTTCCCGAAGCTCC 59.852 42.308 0.00 0.00 0.00 4.70
2498 5564 0.951040 CGAAGCTCCGAAAACCAGCT 60.951 55.000 0.00 0.00 45.69 4.24
2513 5579 4.388577 ACCAGCTTTACCAGGAGAAAAT 57.611 40.909 0.00 0.00 0.00 1.82
2619 5685 0.238289 GTCACATCAACAACGCCTGG 59.762 55.000 0.00 0.00 0.00 4.45
2772 5839 3.140325 TCTAGAAACCTTGGCCAACTG 57.860 47.619 16.05 11.50 0.00 3.16
2788 5855 5.224888 GCCAACTGTATGCCATGATATTTG 58.775 41.667 0.00 0.00 0.00 2.32
2792 5859 6.191657 ACTGTATGCCATGATATTTGAGGA 57.808 37.500 0.00 0.00 0.00 3.71
2893 5960 6.624352 TCTGTTCTTTTCCATGTTTCTCTG 57.376 37.500 0.00 0.00 0.00 3.35
3016 6097 8.600449 AATAAATGATACTAGCAGACAAGAGC 57.400 34.615 0.00 0.00 0.00 4.09
3019 6100 1.835494 TACTAGCAGACAAGAGCCGT 58.165 50.000 0.00 0.00 0.00 5.68
3027 6108 2.749044 CAAGAGCCGTGGCAGCAT 60.749 61.111 14.29 0.00 44.88 3.79
3029 6110 0.816825 CAAGAGCCGTGGCAGCATAT 60.817 55.000 14.29 0.00 44.88 1.78
3031 6112 2.280389 AGCCGTGGCAGCATATCG 60.280 61.111 14.29 0.00 44.88 2.92
3044 6125 0.301687 CATATCGCACTCGTGGTTGC 59.698 55.000 0.00 0.00 36.96 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.660789 ATCAGCAAAAATCCTACATGGC 57.339 40.909 0.00 0.00 35.26 4.40
4 5 9.859427 CAAATTCTTATCAGCAAAAATCCTACA 57.141 29.630 0.00 0.00 0.00 2.74
5 6 9.305925 CCAAATTCTTATCAGCAAAAATCCTAC 57.694 33.333 0.00 0.00 0.00 3.18
6 7 9.253832 TCCAAATTCTTATCAGCAAAAATCCTA 57.746 29.630 0.00 0.00 0.00 2.94
7 8 8.137745 TCCAAATTCTTATCAGCAAAAATCCT 57.862 30.769 0.00 0.00 0.00 3.24
8 9 8.776376 TTCCAAATTCTTATCAGCAAAAATCC 57.224 30.769 0.00 0.00 0.00 3.01
9 10 9.643693 TCTTCCAAATTCTTATCAGCAAAAATC 57.356 29.630 0.00 0.00 0.00 2.17
15 16 9.241919 TGTTATTCTTCCAAATTCTTATCAGCA 57.758 29.630 0.00 0.00 0.00 4.41
16 17 9.508567 GTGTTATTCTTCCAAATTCTTATCAGC 57.491 33.333 0.00 0.00 0.00 4.26
67 68 9.295825 TGGTACACATTATCTTGAGACATTTTT 57.704 29.630 0.00 0.00 0.00 1.94
68 69 8.862325 TGGTACACATTATCTTGAGACATTTT 57.138 30.769 0.00 0.00 0.00 1.82
89 90 5.339944 ACATTCCTATGTGCCAAAGATGGTA 60.340 40.000 0.00 0.00 43.29 3.25
90 91 4.570505 ACATTCCTATGTGCCAAAGATGGT 60.571 41.667 0.00 0.00 43.29 3.55
91 92 3.956199 ACATTCCTATGTGCCAAAGATGG 59.044 43.478 0.00 0.00 43.29 3.51
92 93 5.359009 AGAACATTCCTATGTGCCAAAGATG 59.641 40.000 0.00 0.00 44.14 2.90
93 94 5.359009 CAGAACATTCCTATGTGCCAAAGAT 59.641 40.000 0.00 0.00 44.14 2.40
94 95 4.701651 CAGAACATTCCTATGTGCCAAAGA 59.298 41.667 0.00 0.00 44.14 2.52
95 96 4.701651 TCAGAACATTCCTATGTGCCAAAG 59.298 41.667 0.00 0.00 44.14 2.77
96 97 4.661222 TCAGAACATTCCTATGTGCCAAA 58.339 39.130 0.00 0.00 44.14 3.28
97 98 4.299586 TCAGAACATTCCTATGTGCCAA 57.700 40.909 0.00 0.00 44.14 4.52
98 99 3.998913 TCAGAACATTCCTATGTGCCA 57.001 42.857 0.00 0.00 44.14 4.92
99 100 6.942532 TTTATCAGAACATTCCTATGTGCC 57.057 37.500 0.00 0.00 44.14 5.01
100 101 8.213518 TCTTTTATCAGAACATTCCTATGTGC 57.786 34.615 0.00 0.00 44.14 4.57
106 107 8.924511 TGTCTTTCTTTTATCAGAACATTCCT 57.075 30.769 0.00 0.00 32.28 3.36
111 112 8.721478 GCACTATGTCTTTCTTTTATCAGAACA 58.279 33.333 0.00 0.00 32.28 3.18
112 113 8.940952 AGCACTATGTCTTTCTTTTATCAGAAC 58.059 33.333 0.00 0.00 32.28 3.01
113 114 9.507329 AAGCACTATGTCTTTCTTTTATCAGAA 57.493 29.630 0.00 0.00 0.00 3.02
116 117 9.944376 ACTAAGCACTATGTCTTTCTTTTATCA 57.056 29.630 0.00 0.00 0.00 2.15
118 119 9.726438 ACACTAAGCACTATGTCTTTCTTTTAT 57.274 29.630 0.00 0.00 0.00 1.40
119 120 9.555727 AACACTAAGCACTATGTCTTTCTTTTA 57.444 29.630 0.00 0.00 0.00 1.52
120 121 8.451908 AACACTAAGCACTATGTCTTTCTTTT 57.548 30.769 0.00 0.00 0.00 2.27
121 122 8.451908 AAACACTAAGCACTATGTCTTTCTTT 57.548 30.769 0.00 0.00 0.00 2.52
122 123 8.451908 AAAACACTAAGCACTATGTCTTTCTT 57.548 30.769 0.00 0.00 0.00 2.52
123 124 7.173390 GGAAAACACTAAGCACTATGTCTTTCT 59.827 37.037 0.00 0.00 30.92 2.52
124 125 7.173390 AGGAAAACACTAAGCACTATGTCTTTC 59.827 37.037 0.00 0.00 0.00 2.62
125 126 6.998673 AGGAAAACACTAAGCACTATGTCTTT 59.001 34.615 0.00 0.00 0.00 2.52
126 127 6.534634 AGGAAAACACTAAGCACTATGTCTT 58.465 36.000 0.00 0.00 0.00 3.01
127 128 6.115448 AGGAAAACACTAAGCACTATGTCT 57.885 37.500 0.00 0.00 0.00 3.41
128 129 7.097834 AGTAGGAAAACACTAAGCACTATGTC 58.902 38.462 0.00 0.00 0.00 3.06
129 130 7.005709 AGTAGGAAAACACTAAGCACTATGT 57.994 36.000 0.00 0.00 0.00 2.29
130 131 7.819900 AGAAGTAGGAAAACACTAAGCACTATG 59.180 37.037 0.00 0.00 0.00 2.23
131 132 7.908453 AGAAGTAGGAAAACACTAAGCACTAT 58.092 34.615 0.00 0.00 0.00 2.12
132 133 7.299246 AGAAGTAGGAAAACACTAAGCACTA 57.701 36.000 0.00 0.00 0.00 2.74
133 134 6.176014 AGAAGTAGGAAAACACTAAGCACT 57.824 37.500 0.00 0.00 0.00 4.40
134 135 6.862711 AAGAAGTAGGAAAACACTAAGCAC 57.137 37.500 0.00 0.00 0.00 4.40
135 136 8.967664 TTAAAGAAGTAGGAAAACACTAAGCA 57.032 30.769 0.00 0.00 0.00 3.91
185 186 1.435563 TCTTTGGGTCCTGGGTCTAGA 59.564 52.381 0.00 0.00 0.00 2.43
192 193 0.698238 TGTGGATCTTTGGGTCCTGG 59.302 55.000 0.00 0.00 35.49 4.45
195 196 0.323451 GGGTGTGGATCTTTGGGTCC 60.323 60.000 0.00 0.00 35.02 4.46
196 197 0.676782 CGGGTGTGGATCTTTGGGTC 60.677 60.000 0.00 0.00 0.00 4.46
199 200 0.324943 ACTCGGGTGTGGATCTTTGG 59.675 55.000 0.00 0.00 0.00 3.28
200 201 3.328382 TTACTCGGGTGTGGATCTTTG 57.672 47.619 0.00 0.00 0.00 2.77
201 202 3.868754 GCTTTACTCGGGTGTGGATCTTT 60.869 47.826 0.00 0.00 0.00 2.52
202 203 2.354805 GCTTTACTCGGGTGTGGATCTT 60.355 50.000 0.00 0.00 0.00 2.40
203 204 1.207329 GCTTTACTCGGGTGTGGATCT 59.793 52.381 0.00 0.00 0.00 2.75
204 205 1.066430 TGCTTTACTCGGGTGTGGATC 60.066 52.381 0.00 0.00 0.00 3.36
206 207 0.034337 GTGCTTTACTCGGGTGTGGA 59.966 55.000 0.00 0.00 0.00 4.02
207 208 0.034896 AGTGCTTTACTCGGGTGTGG 59.965 55.000 0.00 0.00 33.17 4.17
239 243 7.219322 ACATGCTTTGCTCTTTCCTAAATTTT 58.781 30.769 0.00 0.00 0.00 1.82
248 252 5.971895 TGAAAAACATGCTTTGCTCTTTC 57.028 34.783 1.36 0.31 0.00 2.62
263 267 5.676331 GCCGATGAGTTTAGGGATGAAAAAC 60.676 44.000 0.00 0.00 0.00 2.43
265 269 3.945285 GCCGATGAGTTTAGGGATGAAAA 59.055 43.478 0.00 0.00 0.00 2.29
270 274 4.804261 GCATTAGCCGATGAGTTTAGGGAT 60.804 45.833 1.35 0.00 33.58 3.85
273 277 3.466836 TGCATTAGCCGATGAGTTTAGG 58.533 45.455 1.35 0.00 41.13 2.69
284 288 0.940126 GACCACATCTGCATTAGCCG 59.060 55.000 0.00 0.00 41.13 5.52
289 293 3.090210 TCAATGGACCACATCTGCATT 57.910 42.857 0.00 0.00 39.40 3.56
293 297 4.460034 TGTGAAATCAATGGACCACATCTG 59.540 41.667 0.00 0.00 39.40 2.90
294 298 4.665451 TGTGAAATCAATGGACCACATCT 58.335 39.130 0.00 0.00 39.40 2.90
295 299 5.163513 GTTGTGAAATCAATGGACCACATC 58.836 41.667 0.00 0.00 39.40 3.06
296 300 4.021192 GGTTGTGAAATCAATGGACCACAT 60.021 41.667 0.00 0.00 43.07 3.21
297 301 3.320541 GGTTGTGAAATCAATGGACCACA 59.679 43.478 0.00 0.00 32.76 4.17
298 302 3.320541 TGGTTGTGAAATCAATGGACCAC 59.679 43.478 0.00 0.00 0.00 4.16
299 303 3.320541 GTGGTTGTGAAATCAATGGACCA 59.679 43.478 0.00 0.00 0.00 4.02
300 304 3.320541 TGTGGTTGTGAAATCAATGGACC 59.679 43.478 0.00 0.00 0.00 4.46
301 305 4.582701 TGTGGTTGTGAAATCAATGGAC 57.417 40.909 0.00 0.00 0.00 4.02
302 306 5.453057 CCTTTGTGGTTGTGAAATCAATGGA 60.453 40.000 0.00 0.00 34.35 3.41
307 311 3.030291 AGCCTTTGTGGTTGTGAAATCA 58.970 40.909 0.00 0.00 38.35 2.57
308 312 3.383761 CAGCCTTTGTGGTTGTGAAATC 58.616 45.455 0.00 0.00 41.43 2.17
342 346 1.414378 GAAATGCGTCCGGTTTTTGG 58.586 50.000 0.00 0.00 0.00 3.28
360 364 1.004862 TGTATGCAAAATGGGGGACGA 59.995 47.619 0.00 0.00 0.00 4.20
361 365 1.468985 TGTATGCAAAATGGGGGACG 58.531 50.000 0.00 0.00 0.00 4.79
385 389 7.230849 TGTTCAAAGATTTCTGGTGCATAAT 57.769 32.000 0.00 0.00 0.00 1.28
386 390 6.647334 TGTTCAAAGATTTCTGGTGCATAA 57.353 33.333 0.00 0.00 0.00 1.90
387 391 6.265196 AGTTGTTCAAAGATTTCTGGTGCATA 59.735 34.615 0.00 0.00 0.00 3.14
388 392 5.069516 AGTTGTTCAAAGATTTCTGGTGCAT 59.930 36.000 0.00 0.00 0.00 3.96
400 404 7.416213 CCATGTTTTGACCTAGTTGTTCAAAGA 60.416 37.037 0.00 0.00 32.85 2.52
402 406 6.153680 ACCATGTTTTGACCTAGTTGTTCAAA 59.846 34.615 0.00 0.00 0.00 2.69
448 454 9.142014 ACTTTGACTAGATCTTATATGCAGACT 57.858 33.333 0.00 0.00 0.00 3.24
449 455 9.405587 GACTTTGACTAGATCTTATATGCAGAC 57.594 37.037 0.00 0.00 0.00 3.51
450 456 9.136323 TGACTTTGACTAGATCTTATATGCAGA 57.864 33.333 0.00 0.00 0.00 4.26
451 457 9.755804 TTGACTTTGACTAGATCTTATATGCAG 57.244 33.333 0.00 0.00 0.00 4.41
640 646 3.891049 AGCTGTTCCAGTGAGAGTTTTT 58.109 40.909 0.00 0.00 33.43 1.94
641 647 3.567478 AGCTGTTCCAGTGAGAGTTTT 57.433 42.857 0.00 0.00 33.43 2.43
642 648 3.556004 GCTAGCTGTTCCAGTGAGAGTTT 60.556 47.826 7.70 0.00 33.43 2.66
643 649 2.028567 GCTAGCTGTTCCAGTGAGAGTT 60.029 50.000 7.70 0.00 33.43 3.01
644 650 1.548269 GCTAGCTGTTCCAGTGAGAGT 59.452 52.381 7.70 0.00 33.43 3.24
645 651 1.824230 AGCTAGCTGTTCCAGTGAGAG 59.176 52.381 18.57 0.00 33.43 3.20
646 652 1.930251 AGCTAGCTGTTCCAGTGAGA 58.070 50.000 18.57 0.00 33.43 3.27
647 653 2.757868 ACTAGCTAGCTGTTCCAGTGAG 59.242 50.000 27.68 14.95 33.43 3.51
648 654 2.808919 ACTAGCTAGCTGTTCCAGTGA 58.191 47.619 27.68 2.47 33.43 3.41
649 655 3.601443 AACTAGCTAGCTGTTCCAGTG 57.399 47.619 27.68 8.91 33.43 3.66
650 656 4.040461 TGAAAACTAGCTAGCTGTTCCAGT 59.960 41.667 27.68 18.55 33.43 4.00
651 657 4.390297 GTGAAAACTAGCTAGCTGTTCCAG 59.610 45.833 27.68 17.87 34.12 3.86
652 658 4.202315 TGTGAAAACTAGCTAGCTGTTCCA 60.202 41.667 27.68 21.93 0.00 3.53
653 659 4.315803 TGTGAAAACTAGCTAGCTGTTCC 58.684 43.478 27.68 20.16 0.00 3.62
654 660 4.991687 ACTGTGAAAACTAGCTAGCTGTTC 59.008 41.667 27.68 21.78 0.00 3.18
655 661 4.752101 CACTGTGAAAACTAGCTAGCTGTT 59.248 41.667 27.68 23.15 0.00 3.16
656 662 4.310769 CACTGTGAAAACTAGCTAGCTGT 58.689 43.478 27.68 18.98 0.00 4.40
657 663 3.124297 GCACTGTGAAAACTAGCTAGCTG 59.876 47.826 27.68 18.34 0.00 4.24
658 664 3.330267 GCACTGTGAAAACTAGCTAGCT 58.670 45.455 23.12 23.12 0.00 3.32
659 665 2.092838 CGCACTGTGAAAACTAGCTAGC 59.907 50.000 20.91 6.62 0.00 3.42
660 666 3.318017 ACGCACTGTGAAAACTAGCTAG 58.682 45.455 19.44 19.44 0.00 3.42
661 667 3.380479 ACGCACTGTGAAAACTAGCTA 57.620 42.857 12.86 0.00 0.00 3.32
684 690 0.237235 TCTTTTTGCGTGCGATCCAC 59.763 50.000 0.00 4.71 41.15 4.02
685 691 1.135717 CATCTTTTTGCGTGCGATCCA 60.136 47.619 0.00 0.00 0.00 3.41
686 692 1.135689 ACATCTTTTTGCGTGCGATCC 60.136 47.619 0.00 0.00 0.00 3.36
687 693 2.247311 ACATCTTTTTGCGTGCGATC 57.753 45.000 0.00 0.00 0.00 3.69
689 695 2.223363 TGAAACATCTTTTTGCGTGCGA 60.223 40.909 0.00 0.00 0.00 5.10
706 717 6.816640 CGTAGTGTCCTCCAAAGATTATGAAA 59.183 38.462 0.00 0.00 0.00 2.69
710 770 5.934402 ACGTAGTGTCCTCCAAAGATTAT 57.066 39.130 0.00 0.00 42.51 1.28
761 822 1.300465 CGGTCTCGGAGGATGCATG 60.300 63.158 2.46 0.00 0.00 4.06
834 895 1.068588 GATGCATGCATGGATGTGCTT 59.931 47.619 36.73 16.19 45.27 3.91
963 1030 5.942872 GCTCTTGCTGCTTTTATAAACTGA 58.057 37.500 0.00 0.00 36.03 3.41
982 1049 4.454161 CGAGCTGTATATGTACTGAGCTCT 59.546 45.833 25.74 10.35 45.56 4.09
1077 2957 0.457337 GTTGGTGCCGGAGTACTACG 60.457 60.000 21.03 21.03 36.49 3.51
1229 3668 5.400066 AAACCCACAAATTAATTCTCCGG 57.600 39.130 0.10 0.00 0.00 5.14
1231 3670 9.772973 AAGTTAAAACCCACAAATTAATTCTCC 57.227 29.630 0.10 0.00 0.00 3.71
1253 3692 3.256631 GCTCCATCCATGTGTCAAAAGTT 59.743 43.478 0.00 0.00 0.00 2.66
1259 3698 0.253894 CCTGCTCCATCCATGTGTCA 59.746 55.000 0.00 0.00 0.00 3.58
1260 3699 0.465097 CCCTGCTCCATCCATGTGTC 60.465 60.000 0.00 0.00 0.00 3.67
1261 3700 1.611419 CCCTGCTCCATCCATGTGT 59.389 57.895 0.00 0.00 0.00 3.72
1263 3702 2.311070 TGCCCTGCTCCATCCATGT 61.311 57.895 0.00 0.00 0.00 3.21
1295 3927 2.759783 CAGACCTGCATGAAGACCG 58.240 57.895 0.74 0.00 0.00 4.79
1385 4017 2.355126 CGACCATGATCTCGGCCG 60.355 66.667 22.12 22.12 0.00 6.13
1396 4028 1.220206 CAGCTTCCTCTGCGACCAT 59.780 57.895 0.00 0.00 35.28 3.55
1496 4130 5.929415 TCAAGCGTCTACATGTGTTTCATAA 59.071 36.000 9.11 0.00 34.67 1.90
1604 4240 1.697432 CCAGTGAAACCTGACCACCTA 59.303 52.381 0.00 0.00 37.80 3.08
1697 4334 5.867716 TCTAAGTCAACGCTAATTCAGAACC 59.132 40.000 0.00 0.00 0.00 3.62
1704 4341 9.032420 GCTACTATTTCTAAGTCAACGCTAATT 57.968 33.333 0.00 0.00 0.00 1.40
1705 4342 8.195436 TGCTACTATTTCTAAGTCAACGCTAAT 58.805 33.333 0.00 0.00 0.00 1.73
1706 4343 7.541162 TGCTACTATTTCTAAGTCAACGCTAA 58.459 34.615 0.00 0.00 0.00 3.09
1735 4372 3.824443 TGTTACTTCTCATGTGACCGAGA 59.176 43.478 0.00 0.00 36.50 4.04
1743 4380 5.197451 TGGTGGTTTTGTTACTTCTCATGT 58.803 37.500 0.00 0.00 0.00 3.21
1765 4402 7.290857 ACAACGAAGCATGTATAAAGTACTG 57.709 36.000 0.00 0.00 0.00 2.74
1770 4407 7.851822 AAACAACAACGAAGCATGTATAAAG 57.148 32.000 0.00 0.00 30.59 1.85
1803 4820 1.228063 CCGCCCCTTCATGGATCTG 60.228 63.158 0.00 0.00 38.35 2.90
1849 4866 1.921243 CATCGTAGGCATCGTTGTCA 58.079 50.000 0.27 0.00 0.00 3.58
1853 4870 0.459899 TGAGCATCGTAGGCATCGTT 59.540 50.000 0.00 0.00 38.61 3.85
2004 5024 1.539929 GCTTCGGCATAGCATGACTCT 60.540 52.381 0.00 0.00 41.33 3.24
2288 5313 6.425114 CACCCATTATAGTGTACATTGAGAGC 59.575 42.308 0.00 0.00 0.00 4.09
2303 5328 2.493035 CACATGCGCTCACCCATTATA 58.507 47.619 9.73 0.00 0.00 0.98
2341 5403 0.820891 GTATCCGCGGTCCTAGTCCA 60.821 60.000 27.15 1.58 0.00 4.02
2464 5530 5.120830 CGGAGCTTCGGGAAAAATATATGAG 59.879 44.000 6.48 0.00 0.00 2.90
2468 5534 4.675976 TCGGAGCTTCGGGAAAAATATA 57.324 40.909 15.94 0.00 0.00 0.86
2469 5535 3.553828 TCGGAGCTTCGGGAAAAATAT 57.446 42.857 15.94 0.00 0.00 1.28
2477 5543 1.298859 CTGGTTTTCGGAGCTTCGGG 61.299 60.000 15.94 0.00 0.00 5.14
2487 5553 2.484264 CTCCTGGTAAAGCTGGTTTTCG 59.516 50.000 10.36 0.00 0.00 3.46
2524 5590 3.572682 TGGAGAAGACGCTTTTCTACTCA 59.427 43.478 7.60 1.41 36.62 3.41
2534 5600 2.223923 GCTACATCATGGAGAAGACGCT 60.224 50.000 0.00 0.00 26.39 5.07
2619 5685 9.624697 TCTTAGAATTATTGCATTGTTTGTGAC 57.375 29.630 0.00 0.00 0.00 3.67
2772 5839 7.516198 AGTTTCCTCAAATATCATGGCATAC 57.484 36.000 0.00 0.00 0.00 2.39
2788 5855 8.910351 ACATTTGCCTCTATTATAGTTTCCTC 57.090 34.615 0.00 0.00 0.00 3.71
2792 5859 9.461312 TGTTGACATTTGCCTCTATTATAGTTT 57.539 29.630 0.00 0.00 0.00 2.66
2871 5938 6.624352 TCAGAGAAACATGGAAAAGAACAG 57.376 37.500 0.00 0.00 0.00 3.16
3002 6083 0.459237 CCACGGCTCTTGTCTGCTAG 60.459 60.000 0.00 0.00 0.00 3.42
3009 6090 2.184020 TATGCTGCCACGGCTCTTGT 62.184 55.000 9.92 0.00 42.51 3.16
3010 6091 0.816825 ATATGCTGCCACGGCTCTTG 60.817 55.000 9.92 0.00 42.51 3.02
3012 6093 1.070445 GATATGCTGCCACGGCTCT 59.930 57.895 9.92 0.00 42.51 4.09
3013 6094 2.313172 CGATATGCTGCCACGGCTC 61.313 63.158 9.92 1.91 42.51 4.70
3016 6097 2.588596 TGCGATATGCTGCCACGG 60.589 61.111 0.00 0.00 46.63 4.94
3019 6100 1.592400 CGAGTGCGATATGCTGCCA 60.592 57.895 0.00 0.00 46.63 4.92
3027 6108 1.803922 CGCAACCACGAGTGCGATA 60.804 57.895 12.35 0.00 43.89 2.92
3031 6112 2.730672 CTAGCGCAACCACGAGTGC 61.731 63.158 11.47 0.00 41.35 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.