Multiple sequence alignment - TraesCS6A01G384200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G384200 chr6A 100.000 3669 0 0 1 3669 602746493 602742825 0.000000e+00 6776.0
1 TraesCS6A01G384200 chr6A 77.707 157 29 5 1656 1811 217234991 217234840 1.400000e-14 91.6
2 TraesCS6A01G384200 chr6D 94.696 1433 64 6 1477 2907 455987544 455986122 0.000000e+00 2215.0
3 TraesCS6A01G384200 chr6D 90.133 527 48 2 1 523 455989066 455988540 0.000000e+00 682.0
4 TraesCS6A01G384200 chr6D 88.746 311 28 4 2923 3233 455971390 455971087 1.240000e-99 374.0
5 TraesCS6A01G384200 chr6D 95.977 174 7 0 1 174 455996070 455995897 2.160000e-72 283.0
6 TraesCS6A01G384200 chr6D 81.588 277 30 11 2966 3231 333796699 333796433 3.710000e-50 209.0
7 TraesCS6A01G384200 chr6D 81.743 241 29 8 2966 3194 470770147 470769910 1.740000e-43 187.0
8 TraesCS6A01G384200 chr6D 71.083 951 219 38 1596 2512 159010339 159009411 8.090000e-42 182.0
9 TraesCS6A01G384200 chr6D 86.207 116 9 3 715 830 455988260 455988152 6.440000e-23 119.0
10 TraesCS6A01G384200 chr6B 86.783 802 81 15 4 787 693329172 693328378 0.000000e+00 870.0
11 TraesCS6A01G384200 chr6B 94.231 312 17 1 2923 3233 693325759 693325448 3.320000e-130 475.0
12 TraesCS6A01G384200 chr6B 92.697 178 12 1 2122 2299 693326258 693326082 4.700000e-64 255.0
13 TraesCS6A01G384200 chr5A 96.136 440 15 2 3230 3667 211620544 211620105 0.000000e+00 717.0
14 TraesCS6A01G384200 chr3A 96.128 439 16 1 3230 3667 713896057 713896495 0.000000e+00 715.0
15 TraesCS6A01G384200 chr3A 95.045 444 20 2 3225 3667 698712284 698712726 0.000000e+00 697.0
16 TraesCS6A01G384200 chr3A 94.785 441 21 2 3229 3667 647777909 647778349 0.000000e+00 686.0
17 TraesCS6A01G384200 chr3A 80.144 277 34 12 2966 3232 365253849 365254114 1.740000e-43 187.0
18 TraesCS6A01G384200 chr1A 96.101 436 16 1 3233 3667 570046198 570045763 0.000000e+00 710.0
19 TraesCS6A01G384200 chr1A 94.407 447 23 2 3222 3667 533315303 533315748 0.000000e+00 686.0
20 TraesCS6A01G384200 chr7A 95.216 439 18 3 3230 3667 178023884 178023448 0.000000e+00 691.0
21 TraesCS6A01G384200 chrUn 95.183 436 20 1 3233 3667 1716740 1716305 0.000000e+00 688.0
22 TraesCS6A01G384200 chrUn 95.183 436 20 1 3233 3667 189303627 189303192 0.000000e+00 688.0
23 TraesCS6A01G384200 chrUn 82.203 236 29 9 2970 3194 141449241 141449474 1.340000e-44 191.0
24 TraesCS6A01G384200 chr5B 83.404 235 32 7 2966 3194 13184502 13184269 1.030000e-50 211.0
25 TraesCS6A01G384200 chr3B 79.932 294 39 9 2950 3232 547481523 547481807 8.040000e-47 198.0
26 TraesCS6A01G384200 chr4D 82.203 236 33 8 2966 3194 386159822 386160055 1.040000e-45 195.0
27 TraesCS6A01G384200 chr4B 79.026 267 38 10 2978 3233 507270450 507270191 2.270000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G384200 chr6A 602742825 602746493 3668 True 6776.000000 6776 100.000000 1 3669 1 chr6A.!!$R2 3668
1 TraesCS6A01G384200 chr6D 455986122 455989066 2944 True 1005.333333 2215 90.345333 1 2907 3 chr6D.!!$R6 2906
2 TraesCS6A01G384200 chr6B 693325448 693329172 3724 True 533.333333 870 91.237000 4 3233 3 chr6B.!!$R1 3229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.320508 GTGGAGAGGGTCGTTGGTTC 60.321 60.0 0.0 0.0 0.0 3.62 F
1155 2867 0.103937 CACCGTGGTTGCCAAACATT 59.896 50.0 0.0 0.0 38.1 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 3762 0.389025 CGCCCCAAATTGCCCTAATC 59.611 55.0 0.0 0.0 0.00 1.75 R
2845 4648 0.392706 CACTGGTCTGTGTGCTACCA 59.607 55.0 0.0 0.0 40.94 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.105797 TGACCACAAGGAAATATTGCATGAC 60.106 40.000 0.00 0.00 38.69 3.06
30 31 5.126061 ACCACAAGGAAATATTGCATGACTC 59.874 40.000 0.00 0.00 38.69 3.36
201 202 0.960286 GGACCTCTATACCCTCACGC 59.040 60.000 0.00 0.00 0.00 5.34
223 224 3.181487 CCCCAGAAGCCATGATAAAAACG 60.181 47.826 0.00 0.00 0.00 3.60
252 253 0.938637 GACATCAGCGAGCGATCCAG 60.939 60.000 0.00 0.00 0.00 3.86
254 255 2.789715 ATCAGCGAGCGATCCAGCA 61.790 57.895 3.46 0.00 40.15 4.41
261 262 1.267732 CGAGCGATCCAGCAATCAAAC 60.268 52.381 0.00 0.00 40.15 2.93
262 263 1.064654 GAGCGATCCAGCAATCAAACC 59.935 52.381 0.00 0.00 40.15 3.27
341 342 3.128764 TCCGTAGTCACATGTGCTAAGAG 59.871 47.826 27.53 21.26 0.00 2.85
346 347 1.208052 TCACATGTGCTAAGAGGGAGC 59.792 52.381 21.38 0.00 40.53 4.70
352 353 0.902984 TGCTAAGAGGGAGCGTTCCA 60.903 55.000 20.67 0.00 45.98 3.53
358 359 2.467880 AGAGGGAGCGTTCCAAGATTA 58.532 47.619 20.67 0.00 45.98 1.75
364 365 4.035675 GGGAGCGTTCCAAGATTAATTCAG 59.964 45.833 20.67 0.00 45.98 3.02
377 378 1.298953 AATTCAGCCAGGGCCTCTAA 58.701 50.000 0.95 0.00 43.17 2.10
387 388 1.701847 AGGGCCTCTAACAGCATATGG 59.298 52.381 0.00 0.00 0.00 2.74
395 396 6.463049 GCCTCTAACAGCATATGGTTTCTCTA 60.463 42.308 4.25 0.00 0.00 2.43
398 399 8.023021 TCTAACAGCATATGGTTTCTCTATGT 57.977 34.615 4.25 0.00 0.00 2.29
434 435 2.873170 TGAATGTCAAATCGTGTCGC 57.127 45.000 0.00 0.00 0.00 5.19
444 445 3.853330 CGTGTCGCCGCATTCCAG 61.853 66.667 0.00 0.00 0.00 3.86
457 458 1.821061 ATTCCAGCGCCCGATAGAGG 61.821 60.000 2.29 0.00 39.76 3.69
468 469 2.123854 ATAGAGGCGGCGTGGAGA 60.124 61.111 9.37 0.00 0.00 3.71
481 482 0.320508 GTGGAGAGGGTCGTTGGTTC 60.321 60.000 0.00 0.00 0.00 3.62
484 485 0.966920 GAGAGGGTCGTTGGTTCTGA 59.033 55.000 0.00 0.00 0.00 3.27
490 491 1.070786 TCGTTGGTTCTGAGTGGCC 59.929 57.895 0.00 0.00 0.00 5.36
502 503 1.066430 TGAGTGGCCGATAACCAGAAC 60.066 52.381 0.00 0.00 38.04 3.01
572 742 7.452880 TCATTCCTTGTTCCTAAAACTGATG 57.547 36.000 0.00 0.00 0.00 3.07
575 745 9.177608 CATTCCTTGTTCCTAAAACTGATGATA 57.822 33.333 0.00 0.00 0.00 2.15
576 746 9.927081 ATTCCTTGTTCCTAAAACTGATGATAT 57.073 29.630 0.00 0.00 0.00 1.63
603 773 1.574134 GGGAAAGTGTCGTTCGTCAA 58.426 50.000 0.00 0.00 0.00 3.18
605 775 2.286008 GGGAAAGTGTCGTTCGTCAAAC 60.286 50.000 0.00 0.00 34.31 2.93
621 791 9.453325 GTTCGTCAAACTGGTATTTTCATTTTA 57.547 29.630 0.00 0.00 34.85 1.52
622 792 9.672086 TTCGTCAAACTGGTATTTTCATTTTAG 57.328 29.630 0.00 0.00 0.00 1.85
623 793 9.058174 TCGTCAAACTGGTATTTTCATTTTAGA 57.942 29.630 0.00 0.00 0.00 2.10
624 794 9.672086 CGTCAAACTGGTATTTTCATTTTAGAA 57.328 29.630 0.00 0.00 0.00 2.10
656 831 1.221466 GCAGTGAGTACAGCGTTGCA 61.221 55.000 0.00 0.00 29.47 4.08
657 832 1.432514 CAGTGAGTACAGCGTTGCAT 58.567 50.000 0.00 0.00 0.00 3.96
713 897 0.387367 CTGTGAAGACGGACCAGACG 60.387 60.000 0.00 0.00 37.36 4.18
726 912 3.148279 AGACGGCCCATCGAGTCC 61.148 66.667 0.00 0.00 34.41 3.85
739 925 2.203788 AGTCCTCTGAACCCGGCA 60.204 61.111 0.00 0.00 0.00 5.69
849 2542 2.932234 CGAGGGTGCGTGGACTCTT 61.932 63.158 0.00 0.00 0.00 2.85
859 2564 1.406447 GTGGACTCTTTCGTCGTCAC 58.594 55.000 0.00 0.00 34.75 3.67
897 2602 4.048696 GGCCTCTCTCTTCTGCCT 57.951 61.111 0.00 0.00 39.05 4.75
944 2649 3.132629 TCGACTCGACAATAGACTTGC 57.867 47.619 0.00 0.00 0.00 4.01
945 2650 2.486592 TCGACTCGACAATAGACTTGCA 59.513 45.455 0.00 0.00 0.00 4.08
946 2651 2.594654 CGACTCGACAATAGACTTGCAC 59.405 50.000 0.00 0.00 0.00 4.57
947 2652 2.594654 GACTCGACAATAGACTTGCACG 59.405 50.000 0.00 0.00 0.00 5.34
948 2653 2.030185 ACTCGACAATAGACTTGCACGT 60.030 45.455 0.00 0.00 0.00 4.49
954 2659 3.183775 ACAATAGACTTGCACGTTCGTTC 59.816 43.478 0.00 0.00 0.00 3.95
969 2674 2.741985 TTCTGCATCCACCACGCG 60.742 61.111 3.53 3.53 0.00 6.01
994 2699 2.732468 CGATCGATCCGCTGCAGG 60.732 66.667 19.51 5.50 0.00 4.85
1033 2738 4.626081 GCCCCCGTGATCCCGATG 62.626 72.222 0.00 0.00 0.00 3.84
1034 2739 3.941188 CCCCCGTGATCCCGATGG 61.941 72.222 0.00 0.00 0.00 3.51
1035 2740 4.626081 CCCCGTGATCCCGATGGC 62.626 72.222 0.00 0.00 0.00 4.40
1036 2741 4.969196 CCCGTGATCCCGATGGCG 62.969 72.222 0.00 0.00 37.24 5.69
1066 2771 1.153549 GGCCTAGCCGACTTGTCTG 60.154 63.158 0.00 0.00 39.62 3.51
1079 2784 4.382320 GTCTGCCCGCACCGGTAA 62.382 66.667 6.87 0.00 46.80 2.85
1080 2785 3.395702 TCTGCCCGCACCGGTAAT 61.396 61.111 6.87 0.00 46.80 1.89
1083 2791 2.437002 GCCCGCACCGGTAATTCA 60.437 61.111 6.87 0.00 46.80 2.57
1092 2800 3.181487 GCACCGGTAATTCATCAGCAATT 60.181 43.478 6.87 0.00 0.00 2.32
1105 2813 7.357429 TCATCAGCAATTCATCTCTCTCTAA 57.643 36.000 0.00 0.00 0.00 2.10
1107 2816 8.089597 TCATCAGCAATTCATCTCTCTCTAATC 58.910 37.037 0.00 0.00 0.00 1.75
1121 2830 3.075148 CTCTAATCTCTATCACCGGCGA 58.925 50.000 9.30 0.00 0.00 5.54
1128 2840 1.884579 TCTATCACCGGCGAATCTACC 59.115 52.381 9.30 0.00 0.00 3.18
1152 2864 2.279186 GCACCGTGGTTGCCAAAC 60.279 61.111 0.00 0.00 34.18 2.93
1153 2865 3.069980 GCACCGTGGTTGCCAAACA 62.070 57.895 0.00 0.00 38.10 2.83
1155 2867 0.103937 CACCGTGGTTGCCAAACATT 59.896 50.000 0.00 0.00 38.10 2.71
1158 2870 1.338337 CCGTGGTTGCCAAACATTACA 59.662 47.619 0.00 0.00 38.10 2.41
1159 2871 2.223829 CCGTGGTTGCCAAACATTACAA 60.224 45.455 0.00 0.00 38.10 2.41
1160 2872 3.553922 CCGTGGTTGCCAAACATTACAAT 60.554 43.478 0.00 0.00 38.10 2.71
1161 2873 4.321304 CCGTGGTTGCCAAACATTACAATA 60.321 41.667 0.00 0.00 38.10 1.90
1164 2876 6.183360 CGTGGTTGCCAAACATTACAATAATG 60.183 38.462 0.00 6.96 38.10 1.90
1165 2877 6.648725 GTGGTTGCCAAACATTACAATAATGT 59.351 34.615 0.00 8.14 42.19 2.71
1166 2878 7.815068 GTGGTTGCCAAACATTACAATAATGTA 59.185 33.333 13.20 0.00 39.73 2.29
1167 2879 8.535335 TGGTTGCCAAACATTACAATAATGTAT 58.465 29.630 13.20 3.63 39.73 2.29
1201 2916 9.249457 CAATGTGACTTCAATACTACATCGTAT 57.751 33.333 0.00 0.00 0.00 3.06
1203 2918 7.130269 TGTGACTTCAATACTACATCGTATCG 58.870 38.462 0.00 0.00 30.13 2.92
1213 2928 8.912787 ATACTACATCGTATCGGATCAAAATC 57.087 34.615 0.00 0.00 0.00 2.17
1216 2931 8.021973 ACTACATCGTATCGGATCAAAATCTAC 58.978 37.037 0.00 0.00 32.12 2.59
1222 2944 7.977293 TCGTATCGGATCAAAATCTACAGAAAA 59.023 33.333 0.00 0.00 32.12 2.29
1228 2950 8.122952 CGGATCAAAATCTACAGAAAATACACC 58.877 37.037 0.00 0.00 32.12 4.16
1232 2954 8.783093 TCAAAATCTACAGAAAATACACCACAG 58.217 33.333 0.00 0.00 0.00 3.66
1233 2955 8.783093 CAAAATCTACAGAAAATACACCACAGA 58.217 33.333 0.00 0.00 0.00 3.41
1234 2956 8.553459 AAATCTACAGAAAATACACCACAGAG 57.447 34.615 0.00 0.00 0.00 3.35
1287 3010 4.641094 ACCACGAACAGTTCCAAAATAACA 59.359 37.500 7.76 0.00 0.00 2.41
1289 3012 5.856455 CCACGAACAGTTCCAAAATAACATC 59.144 40.000 7.76 0.00 0.00 3.06
1291 3014 6.915300 CACGAACAGTTCCAAAATAACATCAA 59.085 34.615 7.76 0.00 0.00 2.57
1292 3015 7.433719 CACGAACAGTTCCAAAATAACATCAAA 59.566 33.333 7.76 0.00 0.00 2.69
1294 3017 8.977505 CGAACAGTTCCAAAATAACATCAAAAT 58.022 29.630 7.76 0.00 0.00 1.82
1342 3098 9.643735 AGTACATAGTAGGAGTAGTATTTTGCT 57.356 33.333 0.00 0.00 0.00 3.91
1369 3133 1.078848 GAGCGTGTCATGGCCTCTT 60.079 57.895 3.32 0.00 0.00 2.85
1378 3142 3.003480 GTCATGGCCTCTTTGTCTGTAC 58.997 50.000 3.32 0.00 0.00 2.90
1397 3161 8.377034 GTCTGTACCTATCTATCTCTTGTCCTA 58.623 40.741 0.00 0.00 0.00 2.94
1400 3164 8.377034 TGTACCTATCTATCTCTTGTCCTACTC 58.623 40.741 0.00 0.00 0.00 2.59
1401 3165 6.786122 ACCTATCTATCTCTTGTCCTACTCC 58.214 44.000 0.00 0.00 0.00 3.85
1402 3166 6.184789 CCTATCTATCTCTTGTCCTACTCCC 58.815 48.000 0.00 0.00 0.00 4.30
1403 3167 5.941146 ATCTATCTCTTGTCCTACTCCCT 57.059 43.478 0.00 0.00 0.00 4.20
1404 3168 5.735733 TCTATCTCTTGTCCTACTCCCTT 57.264 43.478 0.00 0.00 0.00 3.95
1405 3169 6.093617 TCTATCTCTTGTCCTACTCCCTTT 57.906 41.667 0.00 0.00 0.00 3.11
1406 3170 5.894393 TCTATCTCTTGTCCTACTCCCTTTG 59.106 44.000 0.00 0.00 0.00 2.77
1407 3171 3.858135 TCTCTTGTCCTACTCCCTTTGT 58.142 45.455 0.00 0.00 0.00 2.83
1408 3172 5.006896 TCTCTTGTCCTACTCCCTTTGTA 57.993 43.478 0.00 0.00 0.00 2.41
1409 3173 5.590818 TCTCTTGTCCTACTCCCTTTGTAT 58.409 41.667 0.00 0.00 0.00 2.29
1410 3174 6.738635 TCTCTTGTCCTACTCCCTTTGTATA 58.261 40.000 0.00 0.00 0.00 1.47
1411 3175 7.363031 TCTCTTGTCCTACTCCCTTTGTATAT 58.637 38.462 0.00 0.00 0.00 0.86
1412 3176 7.506261 TCTCTTGTCCTACTCCCTTTGTATATC 59.494 40.741 0.00 0.00 0.00 1.63
1413 3177 7.130099 TCTTGTCCTACTCCCTTTGTATATCA 58.870 38.462 0.00 0.00 0.00 2.15
1414 3178 7.622081 TCTTGTCCTACTCCCTTTGTATATCAA 59.378 37.037 0.00 0.00 0.00 2.57
1415 3179 7.743116 TGTCCTACTCCCTTTGTATATCAAA 57.257 36.000 0.00 0.00 42.79 2.69
1416 3180 8.331931 TGTCCTACTCCCTTTGTATATCAAAT 57.668 34.615 0.00 0.00 43.78 2.32
1417 3181 8.429641 TGTCCTACTCCCTTTGTATATCAAATC 58.570 37.037 0.00 0.00 43.78 2.17
1418 3182 8.429641 GTCCTACTCCCTTTGTATATCAAATCA 58.570 37.037 0.00 0.00 43.78 2.57
1419 3183 8.998814 TCCTACTCCCTTTGTATATCAAATCAA 58.001 33.333 0.00 0.00 43.78 2.57
1420 3184 9.627123 CCTACTCCCTTTGTATATCAAATCAAA 57.373 33.333 0.00 0.00 43.78 2.69
1436 3200 9.965824 ATCAAATCAAAATACAAGACGTTTTCT 57.034 25.926 0.00 0.00 35.32 2.52
1437 3201 9.796120 TCAAATCAAAATACAAGACGTTTTCTT 57.204 25.926 0.00 0.00 46.29 2.52
1513 3312 6.665680 TCTGCCAAATAGCAAACCCTAATTAA 59.334 34.615 0.00 0.00 43.52 1.40
1600 3399 0.737219 GATGCATCAACAGCCTCCAC 59.263 55.000 21.92 0.00 0.00 4.02
1730 3529 1.267121 GTGTAGAGCCTCCCTCAACA 58.733 55.000 0.00 0.00 43.31 3.33
1963 3762 2.105128 GAGGACGTGGAGCCATCG 59.895 66.667 0.00 9.03 0.00 3.84
1989 3788 0.179129 GCAATTTGGGGCGTGATCAG 60.179 55.000 0.00 0.00 0.00 2.90
1991 3790 1.322538 AATTTGGGGCGTGATCAGGC 61.323 55.000 28.01 28.01 41.10 4.85
1992 3791 2.215451 ATTTGGGGCGTGATCAGGCT 62.215 55.000 32.44 14.55 41.51 4.58
2002 3801 1.065564 GTGATCAGGCTTTCCAGAGCT 60.066 52.381 0.00 0.00 42.32 4.09
2015 3814 1.833630 CCAGAGCTGACAATAGGACCA 59.166 52.381 0.00 0.00 0.00 4.02
2016 3815 2.237143 CCAGAGCTGACAATAGGACCAA 59.763 50.000 0.00 0.00 0.00 3.67
2021 3820 0.616371 TGACAATAGGACCAACCCCG 59.384 55.000 0.00 0.00 40.05 5.73
2022 3821 0.616891 GACAATAGGACCAACCCCGT 59.383 55.000 0.00 0.00 40.05 5.28
2023 3822 0.326927 ACAATAGGACCAACCCCGTG 59.673 55.000 0.00 0.00 40.05 4.94
2035 3834 0.836400 ACCCCGTGGTCTTGATCACT 60.836 55.000 11.58 0.00 43.06 3.41
2071 3870 0.535102 CGTTGCTTCTCACCACCCTT 60.535 55.000 0.00 0.00 0.00 3.95
2230 4029 4.334118 ATGCAGCACGCCACTCCA 62.334 61.111 0.00 0.00 41.33 3.86
2248 4047 0.102120 CAGAGGACATGGAGACGCTC 59.898 60.000 0.00 0.00 0.00 5.03
2250 4049 2.105128 GGACATGGAGACGCTCGG 59.895 66.667 0.00 0.00 0.00 4.63
2308 4107 0.036010 ATGACAAGAAGCTCACCGGG 60.036 55.000 6.32 0.00 0.00 5.73
2366 4165 0.674895 GAAACGAGGCCAGTGCTCAT 60.675 55.000 5.01 0.00 37.74 2.90
2374 4173 1.270732 GGCCAGTGCTCATATGAGGAG 60.271 57.143 29.43 18.21 43.19 3.69
2431 4230 2.358737 GTCTCCAAGTGGGCACGG 60.359 66.667 0.00 0.00 36.21 4.94
2436 4235 3.127533 CAAGTGGGCACGGCTAGC 61.128 66.667 6.04 6.04 36.20 3.42
2472 4275 2.821679 AAGCGGTTCCTAGGCAAGGC 62.822 60.000 2.96 5.25 46.10 4.35
2478 4281 2.621668 GGTTCCTAGGCAAGGCTTTCAT 60.622 50.000 2.96 0.00 46.10 2.57
2534 4337 1.466167 CCTCCTTCAACAATGTCGCTG 59.534 52.381 0.00 0.00 0.00 5.18
2539 4342 0.310543 TCAACAATGTCGCTGCCAAC 59.689 50.000 0.00 0.00 0.00 3.77
2607 4410 9.556030 GTTTGGTAGAGAAAAACAATATACTGC 57.444 33.333 0.00 0.00 34.62 4.40
2611 4414 5.186198 AGAGAAAAACAATATACTGCGGCT 58.814 37.500 0.00 0.00 0.00 5.52
2614 4417 5.648092 AGAAAAACAATATACTGCGGCTCTT 59.352 36.000 0.00 0.00 0.00 2.85
2685 4488 0.179121 TAAGCCACGCCGATGTACTG 60.179 55.000 0.00 0.00 0.00 2.74
2689 4492 1.999048 CCACGCCGATGTACTGTTTA 58.001 50.000 0.00 0.00 0.00 2.01
2701 4504 6.901887 CGATGTACTGTTTAATCACATGCTTC 59.098 38.462 0.00 0.00 30.25 3.86
2708 4511 6.314018 TGTTTAATCACATGCTTCGATGTTC 58.686 36.000 0.00 0.00 34.18 3.18
2775 4578 4.697352 CAGAGATTGGGTGGTTCTTGTTAG 59.303 45.833 0.00 0.00 0.00 2.34
2842 4645 7.096884 TCCGGATATAATTAACGAGAGATGG 57.903 40.000 0.00 0.00 0.00 3.51
2843 4646 6.096423 TCCGGATATAATTAACGAGAGATGGG 59.904 42.308 0.00 0.00 0.00 4.00
2844 4647 6.096423 CCGGATATAATTAACGAGAGATGGGA 59.904 42.308 0.00 0.00 0.00 4.37
2845 4648 7.201920 CCGGATATAATTAACGAGAGATGGGAT 60.202 40.741 0.00 0.00 0.00 3.85
2862 4665 1.406069 GGATGGTAGCACACAGACCAG 60.406 57.143 0.00 0.00 46.11 4.00
2863 4666 1.276421 GATGGTAGCACACAGACCAGT 59.724 52.381 0.00 0.00 46.11 4.00
2864 4667 0.392706 TGGTAGCACACAGACCAGTG 59.607 55.000 0.00 0.00 44.93 3.66
2898 4702 1.590932 GAGGTAGTCTGCGACCGATA 58.409 55.000 5.29 0.00 43.87 2.92
2907 4711 1.446618 GCGACCGATACGTGGGTTT 60.447 57.895 0.00 0.00 36.47 3.27
2908 4712 1.015607 GCGACCGATACGTGGGTTTT 61.016 55.000 0.00 0.00 36.47 2.43
2909 4713 1.431496 CGACCGATACGTGGGTTTTT 58.569 50.000 0.00 0.00 36.47 1.94
3009 4814 8.576442 AGATTAATCGGATGTTCAACAAGTTTT 58.424 29.630 9.78 0.00 0.00 2.43
3032 4837 0.839277 TGAATGGATCATGGCGTCCT 59.161 50.000 12.03 0.00 35.49 3.85
3035 4840 0.318441 ATGGATCATGGCGTCCTACG 59.682 55.000 12.03 0.00 45.88 3.51
3047 4852 4.181010 CCTACGCATGCTGCCCCT 62.181 66.667 17.13 0.00 41.12 4.79
3065 4870 4.407365 CCCCTTAAACTTCATCCAACAGT 58.593 43.478 0.00 0.00 0.00 3.55
3066 4871 5.566469 CCCCTTAAACTTCATCCAACAGTA 58.434 41.667 0.00 0.00 0.00 2.74
3083 4888 6.183360 CCAACAGTATATGTGCGTAAATGGTT 60.183 38.462 0.00 0.00 43.00 3.67
3100 4905 3.516586 TGGTTTGTCCTCTATCCTGTGA 58.483 45.455 0.00 0.00 37.07 3.58
3155 4960 6.093219 GTGTAGAGCAACATTGAGTGAATGAT 59.907 38.462 9.45 0.00 43.87 2.45
3180 4985 7.535997 TCAATCAATCATTGAGCAAGAAGAAG 58.464 34.615 6.19 0.00 45.12 2.85
3212 5017 0.892755 TTTACGATCTCCACGGCTGT 59.107 50.000 0.00 0.00 34.93 4.40
3215 5020 2.583593 GATCTCCACGGCTGTCGC 60.584 66.667 0.00 0.00 43.89 5.19
3233 5038 1.934463 CGCGCAATGGCTACCTTAG 59.066 57.895 8.75 0.00 38.10 2.18
3234 5039 1.498865 CGCGCAATGGCTACCTTAGG 61.499 60.000 8.75 0.00 38.10 2.69
3235 5040 1.166531 GCGCAATGGCTACCTTAGGG 61.167 60.000 0.30 0.00 38.10 3.53
3236 5041 1.166531 CGCAATGGCTACCTTAGGGC 61.167 60.000 2.32 0.00 38.10 5.19
3237 5042 0.106719 GCAATGGCTACCTTAGGGCA 60.107 55.000 2.32 0.00 41.95 5.36
3239 5044 2.508526 CAATGGCTACCTTAGGGCATC 58.491 52.381 2.32 0.00 45.67 3.91
3240 5045 2.107204 CAATGGCTACCTTAGGGCATCT 59.893 50.000 2.32 0.00 45.67 2.90
3241 5046 1.424638 TGGCTACCTTAGGGCATCTC 58.575 55.000 2.32 0.00 35.63 2.75
3242 5047 0.687920 GGCTACCTTAGGGCATCTCC 59.312 60.000 2.32 0.00 35.63 3.71
3243 5048 0.318762 GCTACCTTAGGGCATCTCCG 59.681 60.000 2.32 0.00 35.63 4.63
3244 5049 0.969894 CTACCTTAGGGCATCTCCGG 59.030 60.000 2.32 0.00 35.63 5.14
3245 5050 1.119574 TACCTTAGGGCATCTCCGGC 61.120 60.000 2.32 0.00 35.63 6.13
3265 5070 4.168291 CGCTCCCAGGAAGGCCTC 62.168 72.222 5.23 0.00 44.80 4.70
3266 5071 3.803162 GCTCCCAGGAAGGCCTCC 61.803 72.222 5.23 9.66 44.80 4.30
3267 5072 3.093172 CTCCCAGGAAGGCCTCCC 61.093 72.222 5.23 0.58 46.81 4.30
3268 5073 4.760220 TCCCAGGAAGGCCTCCCC 62.760 72.222 3.35 10.50 46.81 4.81
3270 5075 3.415087 CCAGGAAGGCCTCCCCAG 61.415 72.222 22.02 15.58 46.81 4.45
3271 5076 3.415087 CAGGAAGGCCTCCCCAGG 61.415 72.222 22.02 12.25 46.81 4.45
3279 5084 4.764143 CCTCCCCAGGCGATTTTT 57.236 55.556 0.00 0.00 30.98 1.94
3312 5117 3.030652 AAAAACAGCCCAGTCGCG 58.969 55.556 0.00 0.00 0.00 5.87
3313 5118 1.822186 AAAAACAGCCCAGTCGCGT 60.822 52.632 5.77 0.00 0.00 6.01
3314 5119 1.782028 AAAAACAGCCCAGTCGCGTC 61.782 55.000 5.77 0.00 0.00 5.19
3315 5120 4.681978 AACAGCCCAGTCGCGTCC 62.682 66.667 5.77 0.00 0.00 4.79
3322 5127 4.135153 CAGTCGCGTCCCCAGGAG 62.135 72.222 5.77 0.00 29.39 3.69
3329 5134 3.090532 GTCCCCAGGAGCCCGATT 61.091 66.667 0.00 0.00 29.39 3.34
3330 5135 2.286121 TCCCCAGGAGCCCGATTT 60.286 61.111 0.00 0.00 0.00 2.17
3331 5136 1.928567 TCCCCAGGAGCCCGATTTT 60.929 57.895 0.00 0.00 0.00 1.82
3332 5137 1.453928 CCCCAGGAGCCCGATTTTC 60.454 63.158 0.00 0.00 0.00 2.29
3333 5138 1.819632 CCCAGGAGCCCGATTTTCG 60.820 63.158 0.00 0.00 40.07 3.46
3334 5139 2.472909 CCAGGAGCCCGATTTTCGC 61.473 63.158 0.00 0.00 38.82 4.70
3335 5140 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
3336 5141 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
3337 5142 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
3341 5146 2.202960 CCGATTTTCGCCGGCCTA 60.203 61.111 23.46 6.42 38.82 3.93
3342 5147 2.244651 CCGATTTTCGCCGGCCTAG 61.245 63.158 23.46 7.26 38.82 3.02
3343 5148 2.244651 CGATTTTCGCCGGCCTAGG 61.245 63.158 23.46 3.67 31.14 3.02
3354 5159 3.188011 GCCTAGGCCGAAAACAGC 58.812 61.111 24.19 0.00 34.56 4.40
3355 5160 2.750888 GCCTAGGCCGAAAACAGCG 61.751 63.158 24.19 0.00 34.56 5.18
3356 5161 2.750888 CCTAGGCCGAAAACAGCGC 61.751 63.158 0.00 0.00 0.00 5.92
3357 5162 2.744709 TAGGCCGAAAACAGCGCC 60.745 61.111 2.29 0.00 0.00 6.53
3419 5224 3.292159 GCCGGGGCGAACTGTTTT 61.292 61.111 2.18 0.00 0.00 2.43
3420 5225 2.642700 CCGGGGCGAACTGTTTTG 59.357 61.111 0.00 0.00 0.00 2.44
3421 5226 2.642700 CGGGGCGAACTGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
3422 5227 2.338620 GGGGCGAACTGTTTTGGC 59.661 61.111 10.46 10.46 40.35 4.52
3423 5228 2.050442 GGGCGAACTGTTTTGGCG 60.050 61.111 11.96 5.00 41.72 5.69
3424 5229 2.729491 GGCGAACTGTTTTGGCGC 60.729 61.111 13.79 13.79 46.20 6.53
3425 5230 3.091022 GCGAACTGTTTTGGCGCG 61.091 61.111 0.00 0.00 38.24 6.86
3426 5231 2.629210 CGAACTGTTTTGGCGCGA 59.371 55.556 12.10 0.00 0.00 5.87
3427 5232 1.010574 CGAACTGTTTTGGCGCGAA 60.011 52.632 12.10 0.00 0.00 4.70
3428 5233 0.590230 CGAACTGTTTTGGCGCGAAA 60.590 50.000 13.91 13.91 0.00 3.46
3429 5234 0.843872 GAACTGTTTTGGCGCGAAAC 59.156 50.000 23.22 23.22 38.01 2.78
3430 5235 0.171455 AACTGTTTTGGCGCGAAACA 59.829 45.000 27.74 27.74 43.03 2.83
3431 5236 0.171455 ACTGTTTTGGCGCGAAACAA 59.829 45.000 28.63 15.11 44.09 2.83
3432 5237 0.570272 CTGTTTTGGCGCGAAACAAC 59.430 50.000 28.63 21.02 44.09 3.32
3433 5238 0.802607 TGTTTTGGCGCGAAACAACC 60.803 50.000 27.64 14.04 42.53 3.77
3434 5239 1.586564 TTTTGGCGCGAAACAACCG 60.587 52.632 17.56 0.00 0.00 4.44
3470 5275 4.719369 GACACGGCGCCTCGTCTT 62.719 66.667 28.27 12.17 41.86 3.01
3471 5276 4.719369 ACACGGCGCCTCGTCTTC 62.719 66.667 26.68 0.00 41.86 2.87
3477 5282 3.702048 CGCCTCGTCTTCCCCCAA 61.702 66.667 0.00 0.00 0.00 4.12
3478 5283 2.046217 GCCTCGTCTTCCCCCAAC 60.046 66.667 0.00 0.00 0.00 3.77
3479 5284 2.264794 CCTCGTCTTCCCCCAACG 59.735 66.667 0.00 0.00 37.74 4.10
3480 5285 2.264794 CTCGTCTTCCCCCAACGG 59.735 66.667 0.00 0.00 37.05 4.44
3481 5286 3.952628 CTCGTCTTCCCCCAACGGC 62.953 68.421 0.00 0.00 37.05 5.68
3483 5288 3.647771 GTCTTCCCCCAACGGCCT 61.648 66.667 0.00 0.00 0.00 5.19
3484 5289 3.327404 TCTTCCCCCAACGGCCTC 61.327 66.667 0.00 0.00 0.00 4.70
3485 5290 3.646715 CTTCCCCCAACGGCCTCA 61.647 66.667 0.00 0.00 0.00 3.86
3486 5291 3.628646 CTTCCCCCAACGGCCTCAG 62.629 68.421 0.00 0.00 0.00 3.35
3487 5292 4.974438 TCCCCCAACGGCCTCAGT 62.974 66.667 0.00 0.00 0.00 3.41
3488 5293 3.966543 CCCCCAACGGCCTCAGTT 61.967 66.667 0.00 0.00 0.00 3.16
3489 5294 2.359975 CCCCAACGGCCTCAGTTC 60.360 66.667 0.00 0.00 0.00 3.01
3490 5295 2.359975 CCCAACGGCCTCAGTTCC 60.360 66.667 0.00 0.00 0.00 3.62
3491 5296 2.429930 CCAACGGCCTCAGTTCCA 59.570 61.111 0.00 0.00 0.00 3.53
3492 5297 1.672356 CCAACGGCCTCAGTTCCAG 60.672 63.158 0.00 0.00 0.00 3.86
3493 5298 2.032681 AACGGCCTCAGTTCCAGC 59.967 61.111 0.00 0.00 0.00 4.85
3494 5299 3.883744 AACGGCCTCAGTTCCAGCG 62.884 63.158 0.00 0.00 0.00 5.18
3496 5301 4.785453 GGCCTCAGTTCCAGCGGG 62.785 72.222 0.00 0.00 0.00 6.13
3497 5302 4.785453 GCCTCAGTTCCAGCGGGG 62.785 72.222 2.05 0.00 38.37 5.73
3498 5303 3.003173 CCTCAGTTCCAGCGGGGA 61.003 66.667 2.05 0.00 46.61 4.81
3505 5310 4.984194 TCCAGCGGGGAATCAATG 57.016 55.556 2.05 0.00 44.80 2.82
3506 5311 1.453745 TCCAGCGGGGAATCAATGC 60.454 57.895 2.05 0.00 44.80 3.56
3507 5312 2.492773 CCAGCGGGGAATCAATGCC 61.493 63.158 0.00 0.00 40.01 4.40
3508 5313 1.753848 CAGCGGGGAATCAATGCCA 60.754 57.895 0.00 0.00 42.44 4.92
3509 5314 1.000233 AGCGGGGAATCAATGCCAA 60.000 52.632 0.00 0.00 42.44 4.52
3510 5315 1.039233 AGCGGGGAATCAATGCCAAG 61.039 55.000 0.00 0.00 42.44 3.61
3511 5316 2.019897 GCGGGGAATCAATGCCAAGG 62.020 60.000 0.00 0.00 42.44 3.61
3512 5317 1.825341 GGGGAATCAATGCCAAGGC 59.175 57.895 3.61 3.61 42.44 4.35
3513 5318 0.688749 GGGGAATCAATGCCAAGGCT 60.689 55.000 12.96 0.00 42.44 4.58
3514 5319 0.462789 GGGAATCAATGCCAAGGCTG 59.537 55.000 12.96 3.28 39.85 4.85
3515 5320 0.179092 GGAATCAATGCCAAGGCTGC 60.179 55.000 12.96 0.00 42.51 5.25
3516 5321 0.179092 GAATCAATGCCAAGGCTGCC 60.179 55.000 11.65 11.65 42.51 4.85
3517 5322 1.952102 AATCAATGCCAAGGCTGCCG 61.952 55.000 13.96 0.00 42.51 5.69
3518 5323 4.807039 CAATGCCAAGGCTGCCGC 62.807 66.667 13.96 11.58 42.51 6.53
3535 5340 2.361610 CCGGTCAGCCTTGCCATT 60.362 61.111 0.00 0.00 0.00 3.16
3536 5341 2.703798 CCGGTCAGCCTTGCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
3537 5342 1.675310 CGGTCAGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
3538 5343 1.033746 CGGTCAGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
3539 5344 1.188863 GGTCAGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
3540 5345 1.135721 GGTCAGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
3541 5346 1.135721 GTCAGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
3542 5347 1.006281 TCAGCCTTGCCATTGATTCCT 59.994 47.619 0.00 0.00 0.00 3.36
3543 5348 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
3544 5349 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
3545 5350 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
3546 5351 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
3547 5352 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
3548 5353 0.394216 TGCCATTGATTCCTCACGGG 60.394 55.000 0.00 0.00 0.00 5.28
3549 5354 1.728490 GCCATTGATTCCTCACGGGC 61.728 60.000 0.00 0.00 41.19 6.13
3550 5355 1.439353 CCATTGATTCCTCACGGGCG 61.439 60.000 0.00 0.00 34.39 6.13
3551 5356 1.153168 ATTGATTCCTCACGGGCGG 60.153 57.895 0.00 0.00 34.39 6.13
3552 5357 3.969250 TTGATTCCTCACGGGCGGC 62.969 63.158 0.00 0.00 34.39 6.53
3598 5403 3.536917 CCCTCCCTCGCACGCATA 61.537 66.667 0.00 0.00 0.00 3.14
3599 5404 2.279517 CCTCCCTCGCACGCATAC 60.280 66.667 0.00 0.00 0.00 2.39
3600 5405 2.494445 CTCCCTCGCACGCATACA 59.506 61.111 0.00 0.00 0.00 2.29
3601 5406 1.878522 CTCCCTCGCACGCATACAC 60.879 63.158 0.00 0.00 0.00 2.90
3602 5407 2.125713 CCCTCGCACGCATACACA 60.126 61.111 0.00 0.00 0.00 3.72
3603 5408 2.452813 CCCTCGCACGCATACACAC 61.453 63.158 0.00 0.00 0.00 3.82
3604 5409 2.689183 CTCGCACGCATACACACG 59.311 61.111 0.00 0.00 0.00 4.49
3605 5410 2.788176 CTCGCACGCATACACACGG 61.788 63.158 0.00 0.00 0.00 4.94
3606 5411 3.848830 CGCACGCATACACACGGG 61.849 66.667 0.00 0.00 35.28 5.28
3607 5412 2.740826 GCACGCATACACACGGGT 60.741 61.111 0.00 0.00 34.46 5.28
3653 5458 4.624364 CACTCGCCTGTGCCCACA 62.624 66.667 0.71 0.71 39.32 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.184581 GCGGATTTTCAATACTAGCCGAG 59.815 47.826 0.00 0.00 39.85 4.63
30 31 2.869801 TGCGGATTTTCAATACTAGCCG 59.130 45.455 0.00 0.00 40.38 5.52
130 131 4.475345 AGTGTTTGTTTTGCCCCAGTATA 58.525 39.130 0.00 0.00 0.00 1.47
201 202 3.181487 CGTTTTTATCATGGCTTCTGGGG 60.181 47.826 0.00 0.00 0.00 4.96
223 224 1.134995 TCGCTGATGTCACACCTCATC 60.135 52.381 0.00 0.00 40.29 2.92
252 253 3.511699 GGAAATCCTTCGGTTTGATTGC 58.488 45.455 0.00 0.00 31.77 3.56
254 255 3.418047 ACGGAAATCCTTCGGTTTGATT 58.582 40.909 0.00 0.00 41.00 2.57
314 315 3.436704 AGCACATGTGACTACGGAAATTG 59.563 43.478 29.80 0.00 0.00 2.32
321 322 3.439293 CCTCTTAGCACATGTGACTACG 58.561 50.000 29.80 22.96 0.00 3.51
341 342 3.945285 TGAATTAATCTTGGAACGCTCCC 59.055 43.478 1.61 0.00 41.64 4.30
346 347 4.201950 CCTGGCTGAATTAATCTTGGAACG 60.202 45.833 0.00 0.00 0.00 3.95
352 353 2.245806 AGGCCCTGGCTGAATTAATCTT 59.754 45.455 8.29 0.00 41.60 2.40
358 359 1.064389 GTTAGAGGCCCTGGCTGAATT 60.064 52.381 8.29 0.00 38.98 2.17
364 365 2.124529 GCTGTTAGAGGCCCTGGC 60.125 66.667 0.00 0.00 41.06 4.85
377 378 6.653020 TGAACATAGAGAAACCATATGCTGT 58.347 36.000 0.00 0.00 31.44 4.40
387 388 7.689812 CGTCATGTGAAATGAACATAGAGAAAC 59.310 37.037 0.00 0.00 36.10 2.78
395 396 5.687770 TCAACGTCATGTGAAATGAACAT 57.312 34.783 0.00 0.00 38.81 2.71
398 399 6.070897 ACATTCAACGTCATGTGAAATGAA 57.929 33.333 4.62 0.68 37.03 2.57
459 460 3.692406 AACGACCCTCTCCACGCC 61.692 66.667 0.00 0.00 0.00 5.68
468 469 0.393077 CACTCAGAACCAACGACCCT 59.607 55.000 0.00 0.00 0.00 4.34
481 482 0.824109 TCTGGTTATCGGCCACTCAG 59.176 55.000 2.24 3.54 31.85 3.35
484 485 0.981183 TGTTCTGGTTATCGGCCACT 59.019 50.000 2.24 0.00 31.85 4.00
490 491 1.722011 AACCGCTGTTCTGGTTATCG 58.278 50.000 0.00 0.00 46.34 2.92
502 503 5.343058 CACATACTTTTCATGAAAACCGCTG 59.657 40.000 26.01 21.06 35.57 5.18
572 742 7.387119 ACGACACTTTCCCCTTTAAAATATC 57.613 36.000 0.00 0.00 0.00 1.63
575 745 5.278120 CGAACGACACTTTCCCCTTTAAAAT 60.278 40.000 0.00 0.00 0.00 1.82
576 746 4.035441 CGAACGACACTTTCCCCTTTAAAA 59.965 41.667 0.00 0.00 0.00 1.52
621 791 1.137086 ACTGCACGTCAGACAAGTTCT 59.863 47.619 17.99 0.00 45.72 3.01
622 792 1.258982 CACTGCACGTCAGACAAGTTC 59.741 52.381 17.99 0.00 45.72 3.01
623 793 1.134818 TCACTGCACGTCAGACAAGTT 60.135 47.619 17.99 0.00 45.72 2.66
624 794 0.459899 TCACTGCACGTCAGACAAGT 59.540 50.000 17.99 0.00 45.72 3.16
625 795 1.135046 CTCACTGCACGTCAGACAAG 58.865 55.000 17.99 10.00 45.72 3.16
627 797 1.001706 GTACTCACTGCACGTCAGACA 60.002 52.381 17.99 0.41 45.72 3.41
665 840 2.418692 CAACGCTGTATGTACCCACAA 58.581 47.619 0.00 0.00 38.42 3.33
666 841 1.942127 GCAACGCTGTATGTACCCACA 60.942 52.381 0.00 0.00 39.52 4.17
668 843 0.321996 TGCAACGCTGTATGTACCCA 59.678 50.000 0.00 0.00 0.00 4.51
713 897 1.330655 TTCAGAGGACTCGATGGGCC 61.331 60.000 0.00 0.00 34.09 5.80
726 912 2.027625 GTTCGTGCCGGGTTCAGAG 61.028 63.158 2.18 0.00 0.00 3.35
742 928 2.284699 AGTAGAGCTGGGCCCGTT 60.285 61.111 19.37 10.22 0.00 4.44
745 931 4.182433 GGCAGTAGAGCTGGGCCC 62.182 72.222 17.59 17.59 45.14 5.80
877 2582 0.177836 GGCAGAAGAGAGAGGCCTTC 59.822 60.000 6.77 6.78 41.39 3.46
926 2631 2.594654 CGTGCAAGTCTATTGTCGAGTC 59.405 50.000 0.00 0.00 0.00 3.36
927 2632 2.030185 ACGTGCAAGTCTATTGTCGAGT 60.030 45.455 0.00 0.00 0.00 4.18
929 2634 2.717580 ACGTGCAAGTCTATTGTCGA 57.282 45.000 0.00 0.00 0.00 4.20
930 2635 2.222289 CGAACGTGCAAGTCTATTGTCG 60.222 50.000 5.55 6.82 0.00 4.35
931 2636 2.729882 ACGAACGTGCAAGTCTATTGTC 59.270 45.455 5.55 0.00 0.00 3.18
932 2637 2.750948 ACGAACGTGCAAGTCTATTGT 58.249 42.857 5.55 0.00 0.00 2.71
933 2638 3.428870 AGAACGAACGTGCAAGTCTATTG 59.571 43.478 5.55 0.00 0.00 1.90
934 2639 3.428870 CAGAACGAACGTGCAAGTCTATT 59.571 43.478 5.55 0.39 0.00 1.73
935 2640 2.987149 CAGAACGAACGTGCAAGTCTAT 59.013 45.455 5.55 0.00 0.00 1.98
936 2641 2.390938 CAGAACGAACGTGCAAGTCTA 58.609 47.619 5.55 0.00 0.00 2.59
937 2642 1.209128 CAGAACGAACGTGCAAGTCT 58.791 50.000 5.55 0.00 0.00 3.24
938 2643 0.383124 GCAGAACGAACGTGCAAGTC 60.383 55.000 5.55 0.00 37.16 3.01
939 2644 1.087202 TGCAGAACGAACGTGCAAGT 61.087 50.000 8.06 0.00 44.05 3.16
940 2645 1.641140 TGCAGAACGAACGTGCAAG 59.359 52.632 8.06 0.00 44.05 4.01
941 2646 3.801129 TGCAGAACGAACGTGCAA 58.199 50.000 8.06 0.00 44.05 4.08
943 2648 1.132640 GGATGCAGAACGAACGTGC 59.867 57.895 0.00 0.00 37.73 5.34
944 2649 0.163788 GTGGATGCAGAACGAACGTG 59.836 55.000 0.00 0.00 0.00 4.49
945 2650 0.949105 GGTGGATGCAGAACGAACGT 60.949 55.000 0.00 0.00 0.00 3.99
946 2651 0.948623 TGGTGGATGCAGAACGAACG 60.949 55.000 0.00 0.00 0.00 3.95
947 2652 0.517316 GTGGTGGATGCAGAACGAAC 59.483 55.000 0.00 0.00 0.00 3.95
948 2653 0.948623 CGTGGTGGATGCAGAACGAA 60.949 55.000 14.18 0.00 33.03 3.85
972 2677 4.031719 AGCGGATCGATCGGAGCG 62.032 66.667 30.51 22.60 0.00 5.03
973 2678 2.429907 CAGCGGATCGATCGGAGC 60.430 66.667 30.51 26.46 0.00 4.70
975 2680 3.199561 CTGCAGCGGATCGATCGGA 62.200 63.158 30.51 13.29 0.00 4.55
976 2681 2.732468 CTGCAGCGGATCGATCGG 60.732 66.667 24.28 24.28 0.00 4.18
977 2682 2.732468 CCTGCAGCGGATCGATCG 60.732 66.667 18.81 9.36 0.00 3.69
1079 2784 6.833041 AGAGAGAGATGAATTGCTGATGAAT 58.167 36.000 0.00 0.00 0.00 2.57
1080 2785 6.236558 AGAGAGAGATGAATTGCTGATGAA 57.763 37.500 0.00 0.00 0.00 2.57
1083 2791 8.197592 AGATTAGAGAGAGATGAATTGCTGAT 57.802 34.615 0.00 0.00 0.00 2.90
1092 2800 7.102993 CGGTGATAGAGATTAGAGAGAGATGA 58.897 42.308 0.00 0.00 0.00 2.92
1105 2813 2.520069 AGATTCGCCGGTGATAGAGAT 58.480 47.619 20.33 8.85 0.00 2.75
1107 2816 2.095161 GGTAGATTCGCCGGTGATAGAG 60.095 54.545 20.33 0.00 0.00 2.43
1121 2830 1.024579 CGGTGCAAAGGCGGTAGATT 61.025 55.000 0.00 0.00 45.35 2.40
1128 2840 3.591835 AACCACGGTGCAAAGGCG 61.592 61.111 1.68 0.00 45.35 5.52
1133 2845 2.351244 TTTGGCAACCACGGTGCAA 61.351 52.632 0.00 0.00 30.78 4.08
1168 2880 9.712305 GTAGTATTGAAGTCACATTGCCTATAT 57.288 33.333 0.00 0.00 0.00 0.86
1174 2886 6.036083 ACGATGTAGTATTGAAGTCACATTGC 59.964 38.462 0.00 0.00 33.11 3.56
1181 2893 6.895898 TCCGATACGATGTAGTATTGAAGTC 58.104 40.000 6.07 0.00 39.64 3.01
1201 2916 8.879759 GTGTATTTTCTGTAGATTTTGATCCGA 58.120 33.333 0.00 0.00 0.00 4.55
1203 2918 8.956426 TGGTGTATTTTCTGTAGATTTTGATCC 58.044 33.333 0.00 0.00 0.00 3.36
1242 2964 7.814107 GTGGTCATGCTGATTTTTAGATCAAAA 59.186 33.333 0.00 0.00 35.74 2.44
1259 2981 0.517316 GGAACTGTTCGTGGTCATGC 59.483 55.000 13.89 0.00 0.00 4.06
1262 2984 2.404923 TTTGGAACTGTTCGTGGTCA 57.595 45.000 13.89 3.70 0.00 4.02
1265 2987 5.176407 TGTTATTTTGGAACTGTTCGTGG 57.824 39.130 13.89 0.00 0.00 4.94
1343 3099 2.742053 GCCATGACACGCTCTCTAAAAA 59.258 45.455 0.00 0.00 0.00 1.94
1349 3105 1.520342 GAGGCCATGACACGCTCTC 60.520 63.158 5.01 0.00 0.00 3.20
1369 3133 7.502895 GGACAAGAGATAGATAGGTACAGACAA 59.497 40.741 0.00 0.00 0.00 3.18
1378 3142 6.011981 AGGGAGTAGGACAAGAGATAGATAGG 60.012 46.154 0.00 0.00 0.00 2.57
1410 3174 9.965824 AGAAAACGTCTTGTATTTTGATTTGAT 57.034 25.926 0.00 0.00 29.66 2.57
1411 3175 9.796120 AAGAAAACGTCTTGTATTTTGATTTGA 57.204 25.926 0.00 0.00 45.29 2.69
1434 3198 9.209048 ACAACCACCAATCATATACTACTAAGA 57.791 33.333 0.00 0.00 0.00 2.10
1468 3232 7.389330 TGGCAGATGAGAAATAACTTCGTTTAA 59.611 33.333 0.00 0.00 39.22 1.52
1469 3233 6.876789 TGGCAGATGAGAAATAACTTCGTTTA 59.123 34.615 0.00 0.00 39.22 2.01
1470 3234 5.705441 TGGCAGATGAGAAATAACTTCGTTT 59.295 36.000 0.00 0.00 39.22 3.60
1471 3235 5.245531 TGGCAGATGAGAAATAACTTCGTT 58.754 37.500 0.00 0.00 39.22 3.85
1474 3238 7.859875 GCTATTTGGCAGATGAGAAATAACTTC 59.140 37.037 0.00 0.00 0.00 3.01
1487 3286 3.105959 AGGGTTTGCTATTTGGCAGAT 57.894 42.857 0.00 0.00 43.39 2.90
1491 3290 5.753438 GCTTAATTAGGGTTTGCTATTTGGC 59.247 40.000 0.00 0.00 0.00 4.52
1492 3291 7.112452 AGCTTAATTAGGGTTTGCTATTTGG 57.888 36.000 0.00 0.00 0.00 3.28
1558 3357 2.234908 GTCCACTATGTCCAGCTTGTCT 59.765 50.000 0.00 0.00 0.00 3.41
1600 3399 3.843240 GTTGAGCGCCGCTTCTCG 61.843 66.667 15.07 0.00 39.88 4.04
1878 3677 2.879462 CTACCACCTTCGCGTCGC 60.879 66.667 7.29 7.29 0.00 5.19
1893 3692 1.470494 CGAGACAGTTGAGAGCAGCTA 59.530 52.381 0.00 0.00 33.49 3.32
1945 3744 2.105128 GATGGCTCCACGTCCTCG 59.895 66.667 0.00 0.00 43.34 4.63
1963 3762 0.389025 CGCCCCAAATTGCCCTAATC 59.611 55.000 0.00 0.00 0.00 1.75
1989 3788 1.831580 ATTGTCAGCTCTGGAAAGCC 58.168 50.000 0.00 0.00 43.56 4.35
1991 3790 4.187694 GTCCTATTGTCAGCTCTGGAAAG 58.812 47.826 0.00 0.00 0.00 2.62
1992 3791 3.055094 GGTCCTATTGTCAGCTCTGGAAA 60.055 47.826 0.00 0.00 0.00 3.13
2002 3801 0.616371 CGGGGTTGGTCCTATTGTCA 59.384 55.000 0.00 0.00 36.25 3.58
2021 3820 1.808945 CAAGGCAGTGATCAAGACCAC 59.191 52.381 0.00 0.00 0.00 4.16
2022 3821 1.421268 ACAAGGCAGTGATCAAGACCA 59.579 47.619 0.00 0.00 0.00 4.02
2023 3822 2.079925 GACAAGGCAGTGATCAAGACC 58.920 52.381 0.00 0.00 0.00 3.85
2053 3852 0.954452 CAAGGGTGGTGAGAAGCAAC 59.046 55.000 0.00 0.00 33.72 4.17
2071 3870 0.963962 GGTACGTCCTCAAGTCACCA 59.036 55.000 0.00 0.00 0.00 4.17
2191 3990 2.740055 CTGAGCTCCGCACACACC 60.740 66.667 12.15 0.00 0.00 4.16
2230 4029 1.380403 CGAGCGTCTCCATGTCCTCT 61.380 60.000 0.00 0.00 0.00 3.69
2248 4047 0.739813 GGTCGGACACTTTGATCCCG 60.740 60.000 10.76 0.00 41.36 5.14
2250 4049 1.736032 CGAGGTCGGACACTTTGATCC 60.736 57.143 10.76 0.00 35.37 3.36
2308 4107 1.830477 TGGAACATGGCCCTAATTTGC 59.170 47.619 0.00 0.00 0.00 3.68
2366 4165 3.562973 GTCGTCGGTATCAACTCCTCATA 59.437 47.826 0.00 0.00 0.00 2.15
2374 4173 2.460918 CTCCATGTCGTCGGTATCAAC 58.539 52.381 0.00 0.00 0.00 3.18
2436 4235 3.291585 CGCTTTACAAAGTTGAGCTGTG 58.708 45.455 0.00 0.00 38.41 3.66
2472 4275 2.426024 CCATGGAGGTGCTTGATGAAAG 59.574 50.000 5.56 0.00 39.07 2.62
2478 4281 0.895100 GTTGCCATGGAGGTGCTTGA 60.895 55.000 18.40 0.00 40.61 3.02
2534 4337 1.733399 GGTCACTCGTCTCGTTGGC 60.733 63.158 0.00 0.00 0.00 4.52
2539 4342 1.703438 CGGGTAGGTCACTCGTCTCG 61.703 65.000 0.00 0.00 46.50 4.04
2611 4414 6.208402 AGCTAATCATGCGATCTCTCTTAAGA 59.792 38.462 4.81 4.81 35.28 2.10
2614 4417 5.336293 CCAGCTAATCATGCGATCTCTCTTA 60.336 44.000 0.00 0.00 35.28 2.10
2685 4488 5.739161 GGAACATCGAAGCATGTGATTAAAC 59.261 40.000 0.00 0.00 37.07 2.01
2689 4492 3.614092 AGGAACATCGAAGCATGTGATT 58.386 40.909 0.00 0.00 37.07 2.57
2735 4538 8.577296 CCAATCTCTGAGAAATTCGTATAGGTA 58.423 37.037 12.00 0.00 0.00 3.08
2736 4539 7.437748 CCAATCTCTGAGAAATTCGTATAGGT 58.562 38.462 12.00 0.00 0.00 3.08
2754 4557 4.010349 CCTAACAAGAACCACCCAATCTC 58.990 47.826 0.00 0.00 0.00 2.75
2775 4578 7.339482 ACTGGAAATACTTATTTCTGACTCCC 58.661 38.462 17.30 4.74 46.63 4.30
2800 4603 1.153353 GATTGTTGTTTCTCCGGCGA 58.847 50.000 9.30 0.00 0.00 5.54
2842 4645 0.613260 TGGTCTGTGTGCTACCATCC 59.387 55.000 0.00 0.00 38.36 3.51
2843 4646 1.276421 ACTGGTCTGTGTGCTACCATC 59.724 52.381 0.00 0.00 42.23 3.51
2844 4647 1.002430 CACTGGTCTGTGTGCTACCAT 59.998 52.381 0.00 0.00 42.23 3.55
2845 4648 0.392706 CACTGGTCTGTGTGCTACCA 59.607 55.000 0.00 0.00 40.94 3.25
2862 4665 8.204836 AGACTACCTCCATGTATTGATAAACAC 58.795 37.037 0.00 0.00 0.00 3.32
2863 4666 8.204160 CAGACTACCTCCATGTATTGATAAACA 58.796 37.037 0.00 0.00 0.00 2.83
2864 4667 7.171678 GCAGACTACCTCCATGTATTGATAAAC 59.828 40.741 0.00 0.00 0.00 2.01
2866 4669 6.516693 CGCAGACTACCTCCATGTATTGATAA 60.517 42.308 0.00 0.00 0.00 1.75
2867 4670 5.048013 CGCAGACTACCTCCATGTATTGATA 60.048 44.000 0.00 0.00 0.00 2.15
2868 4671 4.262207 CGCAGACTACCTCCATGTATTGAT 60.262 45.833 0.00 0.00 0.00 2.57
2870 4673 3.068165 TCGCAGACTACCTCCATGTATTG 59.932 47.826 0.00 0.00 0.00 1.90
2871 4674 3.296854 TCGCAGACTACCTCCATGTATT 58.703 45.455 0.00 0.00 0.00 1.89
2915 4719 7.201376 CGTACTAGACTTATTAGCACGCAAAAA 60.201 37.037 0.00 0.00 32.93 1.94
2916 4720 6.252015 CGTACTAGACTTATTAGCACGCAAAA 59.748 38.462 0.00 0.00 32.93 2.44
2917 4721 5.740569 CGTACTAGACTTATTAGCACGCAAA 59.259 40.000 0.00 0.00 32.93 3.68
2918 4722 5.065090 TCGTACTAGACTTATTAGCACGCAA 59.935 40.000 0.00 0.00 37.65 4.85
2919 4723 4.571984 TCGTACTAGACTTATTAGCACGCA 59.428 41.667 0.00 0.00 37.65 5.24
2920 4724 4.903016 GTCGTACTAGACTTATTAGCACGC 59.097 45.833 0.00 0.00 37.65 5.34
2921 4725 6.040962 TGTCGTACTAGACTTATTAGCACG 57.959 41.667 0.00 0.00 41.47 5.34
2990 4794 5.568685 TGAAAAACTTGTTGAACATCCGA 57.431 34.783 0.00 0.00 0.00 4.55
3039 4844 1.751351 GGATGAAGTTTAAGGGGCAGC 59.249 52.381 0.00 0.00 0.00 5.25
3047 4852 8.673711 GCACATATACTGTTGGATGAAGTTTAA 58.326 33.333 0.00 0.00 35.29 1.52
3065 4870 6.116806 AGGACAAACCATTTACGCACATATA 58.883 36.000 0.00 0.00 42.04 0.86
3066 4871 4.947388 AGGACAAACCATTTACGCACATAT 59.053 37.500 0.00 0.00 42.04 1.78
3083 4888 6.136155 TGATGTATCACAGGATAGAGGACAA 58.864 40.000 0.00 0.00 36.69 3.18
3100 4905 2.361119 AGTACGTGATGCCGTGATGTAT 59.639 45.455 0.00 0.00 41.92 2.29
3132 4937 6.314648 TGATCATTCACTCAATGTTGCTCTAC 59.685 38.462 0.00 0.00 42.47 2.59
3155 4960 7.176165 ACTTCTTCTTGCTCAATGATTGATTGA 59.824 33.333 8.50 0.00 46.85 2.57
3180 4985 9.628983 GTGGAGATCGTAAATCGTAAATTTTAC 57.371 33.333 8.90 8.90 40.80 2.01
3215 5020 1.498865 CCTAAGGTAGCCATTGCGCG 61.499 60.000 0.00 0.00 44.33 6.86
3248 5053 4.168291 GAGGCCTTCCTGGGAGCG 62.168 72.222 6.77 0.00 44.46 5.03
3249 5054 3.803162 GGAGGCCTTCCTGGGAGC 61.803 72.222 6.77 0.00 44.46 4.70
3250 5055 3.093172 GGGAGGCCTTCCTGGGAG 61.093 72.222 24.53 0.00 44.46 4.30
3251 5056 4.760220 GGGGAGGCCTTCCTGGGA 62.760 72.222 30.10 0.00 44.46 4.37
3253 5058 3.415087 CTGGGGAGGCCTTCCTGG 61.415 72.222 30.10 18.11 44.46 4.45
3254 5059 3.415087 CCTGGGGAGGCCTTCCTG 61.415 72.222 30.10 23.65 44.46 3.86
3262 5067 4.764143 AAAAATCGCCTGGGGAGG 57.236 55.556 18.77 0.00 0.00 4.30
3295 5100 1.782028 GACGCGACTGGGCTGTTTTT 61.782 55.000 15.93 0.00 0.00 1.94
3296 5101 2.203153 ACGCGACTGGGCTGTTTT 60.203 55.556 15.93 0.00 0.00 2.43
3297 5102 2.665185 GACGCGACTGGGCTGTTT 60.665 61.111 15.93 0.00 0.00 2.83
3298 5103 4.681978 GGACGCGACTGGGCTGTT 62.682 66.667 15.93 0.00 0.00 3.16
3305 5110 4.135153 CTCCTGGGGACGCGACTG 62.135 72.222 15.93 3.97 0.00 3.51
3312 5117 2.211468 AAAATCGGGCTCCTGGGGAC 62.211 60.000 0.00 0.00 0.00 4.46
3313 5118 1.921869 GAAAATCGGGCTCCTGGGGA 61.922 60.000 0.00 0.00 0.00 4.81
3314 5119 1.453928 GAAAATCGGGCTCCTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
3315 5120 1.819632 CGAAAATCGGGCTCCTGGG 60.820 63.158 0.00 0.00 36.00 4.45
3316 5121 2.472909 GCGAAAATCGGGCTCCTGG 61.473 63.158 1.64 0.00 40.84 4.45
3317 5122 2.472909 GGCGAAAATCGGGCTCCTG 61.473 63.158 1.64 0.00 40.84 3.86
3318 5123 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
3319 5124 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
3320 5125 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
3323 5128 3.743534 TAGGCCGGCGAAAATCGGG 62.744 63.158 22.54 0.00 45.75 5.14
3325 5130 2.244651 CCTAGGCCGGCGAAAATCG 61.245 63.158 22.54 3.93 43.89 3.34
3326 5131 2.543802 GCCTAGGCCGGCGAAAATC 61.544 63.158 24.19 4.96 40.79 2.17
3327 5132 2.516225 GCCTAGGCCGGCGAAAAT 60.516 61.111 24.19 6.15 40.79 1.82
3337 5142 3.188011 GCTGTTTTCGGCCTAGGC 58.812 61.111 26.55 26.55 45.68 3.93
3402 5207 3.292159 AAAACAGTTCGCCCCGGC 61.292 61.111 0.00 0.00 37.85 6.13
3403 5208 2.642700 CAAAACAGTTCGCCCCGG 59.357 61.111 0.00 0.00 0.00 5.73
3404 5209 2.642700 CCAAAACAGTTCGCCCCG 59.357 61.111 0.00 0.00 0.00 5.73
3405 5210 2.338620 GCCAAAACAGTTCGCCCC 59.661 61.111 0.00 0.00 0.00 5.80
3406 5211 2.050442 CGCCAAAACAGTTCGCCC 60.050 61.111 0.00 0.00 0.00 6.13
3407 5212 2.729491 GCGCCAAAACAGTTCGCC 60.729 61.111 0.00 0.00 39.91 5.54
3408 5213 2.975167 TTCGCGCCAAAACAGTTCGC 62.975 55.000 0.00 6.96 42.05 4.70
3409 5214 0.590230 TTTCGCGCCAAAACAGTTCG 60.590 50.000 0.00 0.00 0.00 3.95
3410 5215 0.843872 GTTTCGCGCCAAAACAGTTC 59.156 50.000 21.65 0.00 36.76 3.01
3411 5216 0.171455 TGTTTCGCGCCAAAACAGTT 59.829 45.000 24.07 0.00 40.64 3.16
3412 5217 0.171455 TTGTTTCGCGCCAAAACAGT 59.829 45.000 25.48 0.00 44.75 3.55
3413 5218 0.570272 GTTGTTTCGCGCCAAAACAG 59.430 50.000 25.48 3.28 44.75 3.16
3414 5219 0.802607 GGTTGTTTCGCGCCAAAACA 60.803 50.000 24.07 24.07 43.03 2.83
3415 5220 1.803286 CGGTTGTTTCGCGCCAAAAC 61.803 55.000 20.42 20.42 37.18 2.43
3416 5221 1.586564 CGGTTGTTTCGCGCCAAAA 60.587 52.632 0.56 0.00 0.00 2.44
3417 5222 2.024871 CGGTTGTTTCGCGCCAAA 59.975 55.556 0.00 0.00 0.00 3.28
3418 5223 4.615834 GCGGTTGTTTCGCGCCAA 62.616 61.111 0.00 0.80 43.71 4.52
3453 5258 4.719369 AAGACGAGGCGCCGTGTC 62.719 66.667 33.45 33.45 43.49 3.67
3454 5259 4.719369 GAAGACGAGGCGCCGTGT 62.719 66.667 23.83 23.83 43.49 4.49
3460 5265 3.702048 TTGGGGGAAGACGAGGCG 61.702 66.667 0.00 0.00 0.00 5.52
3461 5266 2.046217 GTTGGGGGAAGACGAGGC 60.046 66.667 0.00 0.00 0.00 4.70
3462 5267 2.264794 CGTTGGGGGAAGACGAGG 59.735 66.667 0.00 0.00 38.99 4.63
3463 5268 2.264794 CCGTTGGGGGAAGACGAG 59.735 66.667 0.00 0.00 38.99 4.18
3464 5269 4.011517 GCCGTTGGGGGAAGACGA 62.012 66.667 0.00 0.00 38.99 4.20
3466 5271 3.623703 GAGGCCGTTGGGGGAAGAC 62.624 68.421 0.00 0.00 35.78 3.01
3467 5272 3.327404 GAGGCCGTTGGGGGAAGA 61.327 66.667 0.00 0.00 35.78 2.87
3468 5273 3.628646 CTGAGGCCGTTGGGGGAAG 62.629 68.421 0.00 0.00 35.78 3.46
3469 5274 3.646715 CTGAGGCCGTTGGGGGAA 61.647 66.667 0.00 0.00 35.78 3.97
3470 5275 4.974438 ACTGAGGCCGTTGGGGGA 62.974 66.667 0.00 0.00 35.78 4.81
3471 5276 3.920093 GAACTGAGGCCGTTGGGGG 62.920 68.421 0.00 0.00 35.78 5.40
3472 5277 2.359975 GAACTGAGGCCGTTGGGG 60.360 66.667 0.00 0.00 39.58 4.96
3473 5278 2.359975 GGAACTGAGGCCGTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
3474 5279 1.672356 CTGGAACTGAGGCCGTTGG 60.672 63.158 0.00 0.00 0.00 3.77
3475 5280 2.328099 GCTGGAACTGAGGCCGTTG 61.328 63.158 0.00 0.00 0.00 4.10
3476 5281 2.032681 GCTGGAACTGAGGCCGTT 59.967 61.111 0.00 0.00 0.00 4.44
3477 5282 4.379243 CGCTGGAACTGAGGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
3479 5284 4.785453 CCCGCTGGAACTGAGGCC 62.785 72.222 0.00 0.00 45.01 5.19
3480 5285 4.785453 CCCCGCTGGAACTGAGGC 62.785 72.222 0.00 0.00 45.01 4.70
3481 5286 3.003173 TCCCCGCTGGAACTGAGG 61.003 66.667 0.00 0.00 45.84 3.86
3488 5293 1.453745 GCATTGATTCCCCGCTGGA 60.454 57.895 0.00 0.00 43.18 3.86
3489 5294 2.492773 GGCATTGATTCCCCGCTGG 61.493 63.158 0.00 0.00 0.00 4.85
3490 5295 1.321805 TTGGCATTGATTCCCCGCTG 61.322 55.000 0.00 0.00 0.00 5.18
3491 5296 1.000233 TTGGCATTGATTCCCCGCT 60.000 52.632 0.00 0.00 0.00 5.52
3492 5297 1.438814 CTTGGCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
3493 5298 2.019897 GCCTTGGCATTGATTCCCCG 62.020 60.000 6.79 0.00 0.00 5.73
3494 5299 0.688749 AGCCTTGGCATTGATTCCCC 60.689 55.000 14.54 0.00 0.00 4.81
3495 5300 0.462789 CAGCCTTGGCATTGATTCCC 59.537 55.000 14.54 0.00 0.00 3.97
3496 5301 0.179092 GCAGCCTTGGCATTGATTCC 60.179 55.000 14.54 0.00 0.00 3.01
3497 5302 3.357504 GCAGCCTTGGCATTGATTC 57.642 52.632 14.54 0.00 0.00 2.52
3518 5323 2.361610 AATGGCAAGGCTGACCGG 60.362 61.111 0.00 0.00 42.76 5.28
3519 5324 1.033746 ATCAATGGCAAGGCTGACCG 61.034 55.000 0.00 0.00 42.76 4.79
3520 5325 1.135721 GAATCAATGGCAAGGCTGACC 59.864 52.381 0.00 0.00 0.00 4.02
3521 5326 1.135721 GGAATCAATGGCAAGGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
3522 5327 1.006281 AGGAATCAATGGCAAGGCTGA 59.994 47.619 0.00 0.00 0.00 4.26
3523 5328 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
3524 5329 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
3525 5330 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
3526 5331 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
3527 5332 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
3581 5386 3.536917 TATGCGTGCGAGGGAGGG 61.537 66.667 0.00 0.00 0.00 4.30
3582 5387 2.279517 GTATGCGTGCGAGGGAGG 60.280 66.667 0.00 0.00 0.00 4.30
3583 5388 1.878522 GTGTATGCGTGCGAGGGAG 60.879 63.158 0.00 0.00 0.00 4.30
3584 5389 2.183300 GTGTATGCGTGCGAGGGA 59.817 61.111 0.00 0.00 0.00 4.20
3585 5390 2.125713 TGTGTATGCGTGCGAGGG 60.126 61.111 0.00 0.00 0.00 4.30
3586 5391 2.788176 CGTGTGTATGCGTGCGAGG 61.788 63.158 0.00 0.00 0.00 4.63
3587 5392 2.689183 CGTGTGTATGCGTGCGAG 59.311 61.111 0.00 0.00 0.00 5.03
3588 5393 2.807470 CCGTGTGTATGCGTGCGA 60.807 61.111 0.00 0.00 0.00 5.10
3589 5394 3.848830 CCCGTGTGTATGCGTGCG 61.849 66.667 0.00 0.00 0.00 5.34
3590 5395 2.740826 ACCCGTGTGTATGCGTGC 60.741 61.111 0.00 0.00 0.00 5.34
3591 5396 3.022401 GCACCCGTGTGTATGCGTG 62.022 63.158 0.00 0.00 44.65 5.34
3592 5397 2.740826 GCACCCGTGTGTATGCGT 60.741 61.111 0.00 0.00 44.65 5.24
3594 5399 3.496131 CCGCACCCGTGTGTATGC 61.496 66.667 7.56 0.00 44.65 3.14
3595 5400 3.496131 GCCGCACCCGTGTGTATG 61.496 66.667 7.56 0.00 44.65 2.39
3604 5409 2.501223 TATATAGCTGCGCCGCACCC 62.501 60.000 25.81 1.59 33.79 4.61
3605 5410 1.078759 CTATATAGCTGCGCCGCACC 61.079 60.000 25.81 0.43 33.79 5.01
3606 5411 1.687494 GCTATATAGCTGCGCCGCAC 61.687 60.000 25.81 5.53 45.62 5.34
3607 5412 1.446099 GCTATATAGCTGCGCCGCA 60.446 57.895 25.81 12.83 45.62 5.69
3608 5413 3.389206 GCTATATAGCTGCGCCGC 58.611 61.111 24.63 16.70 45.62 6.53
3636 5441 4.624364 TGTGGGCACAGGCGAGTG 62.624 66.667 8.48 8.48 42.47 3.51
3637 5442 4.626081 GTGTGGGCACAGGCGAGT 62.626 66.667 0.00 0.00 44.64 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.