Multiple sequence alignment - TraesCS6A01G383600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G383600 chr6A 100.000 2592 0 0 1 2592 602516051 602518642 0.000000e+00 4787
1 TraesCS6A01G383600 chr6A 89.257 754 46 12 787 1507 602502311 602503062 0.000000e+00 911
2 TraesCS6A01G383600 chr6D 85.319 940 67 28 787 1691 455634220 455635123 0.000000e+00 905
3 TraesCS6A01G383600 chr6D 79.381 194 32 1 2107 2300 455637417 455637602 2.090000e-26 130
4 TraesCS6A01G383600 chr6B 87.361 720 60 16 804 1508 692819754 692820457 0.000000e+00 797
5 TraesCS6A01G383600 chr6B 79.010 667 102 25 55 700 510249732 510250381 3.080000e-114 422
6 TraesCS6A01G383600 chr6B 81.102 254 36 8 2107 2358 692821513 692821756 2.630000e-45 193
7 TraesCS6A01G383600 chr6B 86.928 153 13 4 1521 1673 692820500 692820645 5.740000e-37 165
8 TraesCS6A01G383600 chr7B 92.238 554 41 2 62 614 1820366 1820918 0.000000e+00 784
9 TraesCS6A01G383600 chr7B 83.240 537 68 15 82 604 744730524 744729996 8.390000e-130 473
10 TraesCS6A01G383600 chr7B 78.467 548 81 19 154 692 710466614 710467133 8.950000e-85 324
11 TraesCS6A01G383600 chr7A 86.935 620 62 14 81 694 735827188 735827794 0.000000e+00 678
12 TraesCS6A01G383600 chr2B 90.316 506 42 7 2 502 744252717 744253220 0.000000e+00 656
13 TraesCS6A01G383600 chr2B 86.700 203 27 0 487 689 744253239 744253441 2.600000e-55 226
14 TraesCS6A01G383600 chr7D 84.094 635 79 15 68 692 1072117 1072739 6.180000e-166 593
15 TraesCS6A01G383600 chr3B 83.359 649 84 19 57 692 757966930 757967567 1.730000e-161 579
16 TraesCS6A01G383600 chr5D 81.343 670 61 33 52 691 341051527 341052162 1.080000e-133 486


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G383600 chr6A 602516051 602518642 2591 False 4787.0 4787 100.000000 1 2592 1 chr6A.!!$F2 2591
1 TraesCS6A01G383600 chr6A 602502311 602503062 751 False 911.0 911 89.257000 787 1507 1 chr6A.!!$F1 720
2 TraesCS6A01G383600 chr6D 455634220 455637602 3382 False 517.5 905 82.350000 787 2300 2 chr6D.!!$F1 1513
3 TraesCS6A01G383600 chr6B 510249732 510250381 649 False 422.0 422 79.010000 55 700 1 chr6B.!!$F1 645
4 TraesCS6A01G383600 chr6B 692819754 692821756 2002 False 385.0 797 85.130333 804 2358 3 chr6B.!!$F2 1554
5 TraesCS6A01G383600 chr7B 1820366 1820918 552 False 784.0 784 92.238000 62 614 1 chr7B.!!$F1 552
6 TraesCS6A01G383600 chr7B 744729996 744730524 528 True 473.0 473 83.240000 82 604 1 chr7B.!!$R1 522
7 TraesCS6A01G383600 chr7B 710466614 710467133 519 False 324.0 324 78.467000 154 692 1 chr7B.!!$F2 538
8 TraesCS6A01G383600 chr7A 735827188 735827794 606 False 678.0 678 86.935000 81 694 1 chr7A.!!$F1 613
9 TraesCS6A01G383600 chr2B 744252717 744253441 724 False 441.0 656 88.508000 2 689 2 chr2B.!!$F1 687
10 TraesCS6A01G383600 chr7D 1072117 1072739 622 False 593.0 593 84.094000 68 692 1 chr7D.!!$F1 624
11 TraesCS6A01G383600 chr3B 757966930 757967567 637 False 579.0 579 83.359000 57 692 1 chr3B.!!$F1 635
12 TraesCS6A01G383600 chr5D 341051527 341052162 635 False 486.0 486 81.343000 52 691 1 chr5D.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 783 1.262417 TGGCGTACAAGTCCTCATGA 58.738 50.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 4895 0.031585 TCCTATGTGTGCGATACGGC 59.968 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.677836 TGAATGGCGCTGTCTAATTGAC 59.322 45.455 7.64 0.00 45.54 3.18
461 483 6.747659 ATGCAGAATTTTGTAAACGTTGTC 57.252 33.333 0.00 0.00 0.00 3.18
469 491 6.931243 TTTTGTAAACGTTGTCTTGAAACC 57.069 33.333 0.00 0.00 0.00 3.27
476 500 5.128992 ACGTTGTCTTGAAACCAAAAACT 57.871 34.783 0.00 0.00 0.00 2.66
568 643 4.747605 GCTAGCAGCTCCAATTTACTACTC 59.252 45.833 10.63 0.00 38.45 2.59
635 712 2.016318 TGACTTTTGCGCCTCCATATG 58.984 47.619 4.18 0.00 0.00 1.78
649 726 5.364778 CCTCCATATGTCGGTTCATGTTAA 58.635 41.667 1.24 0.00 0.00 2.01
694 773 3.028130 TCTCCAGATGTATGGCGTACAA 58.972 45.455 22.33 5.90 45.87 2.41
700 779 2.953466 TGTATGGCGTACAAGTCCTC 57.047 50.000 16.89 0.00 40.27 3.71
701 780 2.172679 TGTATGGCGTACAAGTCCTCA 58.827 47.619 16.89 0.00 40.27 3.86
702 781 2.764010 TGTATGGCGTACAAGTCCTCAT 59.236 45.455 16.89 0.00 40.27 2.90
703 782 2.315925 ATGGCGTACAAGTCCTCATG 57.684 50.000 0.00 0.00 0.00 3.07
704 783 1.262417 TGGCGTACAAGTCCTCATGA 58.738 50.000 0.00 0.00 0.00 3.07
705 784 1.621317 TGGCGTACAAGTCCTCATGAA 59.379 47.619 0.00 0.00 0.00 2.57
706 785 2.236146 TGGCGTACAAGTCCTCATGAAT 59.764 45.455 0.00 0.00 0.00 2.57
707 786 3.270877 GGCGTACAAGTCCTCATGAATT 58.729 45.455 0.00 0.00 0.00 2.17
708 787 3.689649 GGCGTACAAGTCCTCATGAATTT 59.310 43.478 0.00 0.00 0.00 1.82
709 788 4.156008 GGCGTACAAGTCCTCATGAATTTT 59.844 41.667 0.00 0.00 0.00 1.82
710 789 5.353123 GGCGTACAAGTCCTCATGAATTTTA 59.647 40.000 0.00 0.00 0.00 1.52
711 790 6.248631 GCGTACAAGTCCTCATGAATTTTAC 58.751 40.000 0.00 0.00 33.21 2.01
712 791 6.674760 GCGTACAAGTCCTCATGAATTTTACC 60.675 42.308 0.00 0.00 33.04 2.85
713 792 6.183360 CGTACAAGTCCTCATGAATTTTACCC 60.183 42.308 0.00 0.00 33.04 3.69
714 793 5.016831 ACAAGTCCTCATGAATTTTACCCC 58.983 41.667 0.00 0.00 0.00 4.95
715 794 4.946160 AGTCCTCATGAATTTTACCCCA 57.054 40.909 0.00 0.00 0.00 4.96
716 795 5.269554 AGTCCTCATGAATTTTACCCCAA 57.730 39.130 0.00 0.00 0.00 4.12
717 796 5.650283 AGTCCTCATGAATTTTACCCCAAA 58.350 37.500 0.00 0.00 0.00 3.28
718 797 6.081356 AGTCCTCATGAATTTTACCCCAAAA 58.919 36.000 0.00 0.00 40.34 2.44
719 798 6.556874 AGTCCTCATGAATTTTACCCCAAAAA 59.443 34.615 0.00 0.00 39.51 1.94
742 821 6.521151 AAAAAGTCCTCATGAATGATCCAC 57.479 37.500 0.00 0.00 36.02 4.02
743 822 3.853355 AGTCCTCATGAATGATCCACC 57.147 47.619 0.00 0.00 36.02 4.61
744 823 2.103771 AGTCCTCATGAATGATCCACCG 59.896 50.000 0.00 0.00 36.02 4.94
745 824 2.118679 TCCTCATGAATGATCCACCGT 58.881 47.619 0.00 0.00 36.02 4.83
746 825 3.069586 GTCCTCATGAATGATCCACCGTA 59.930 47.826 0.00 0.00 36.02 4.02
747 826 3.069586 TCCTCATGAATGATCCACCGTAC 59.930 47.826 0.00 0.00 36.02 3.67
748 827 3.393800 CTCATGAATGATCCACCGTACC 58.606 50.000 0.00 0.00 36.02 3.34
749 828 3.038280 TCATGAATGATCCACCGTACCT 58.962 45.455 0.00 0.00 0.00 3.08
750 829 4.219919 TCATGAATGATCCACCGTACCTA 58.780 43.478 0.00 0.00 0.00 3.08
751 830 4.038763 TCATGAATGATCCACCGTACCTAC 59.961 45.833 0.00 0.00 0.00 3.18
752 831 8.916945 CTCATGAATGATCCACCGTACCTACG 62.917 50.000 0.00 0.00 41.54 3.51
772 851 5.623956 ACGGAAGTGGGTATGAATTATGA 57.376 39.130 0.00 0.00 46.97 2.15
773 852 5.996644 ACGGAAGTGGGTATGAATTATGAA 58.003 37.500 0.00 0.00 46.97 2.57
774 853 6.419791 ACGGAAGTGGGTATGAATTATGAAA 58.580 36.000 0.00 0.00 46.97 2.69
775 854 7.060421 ACGGAAGTGGGTATGAATTATGAAAT 58.940 34.615 0.00 0.00 46.97 2.17
776 855 7.013274 ACGGAAGTGGGTATGAATTATGAAATG 59.987 37.037 0.00 0.00 46.97 2.32
777 856 7.147976 GGAAGTGGGTATGAATTATGAAATGC 58.852 38.462 0.00 0.00 0.00 3.56
778 857 6.655078 AGTGGGTATGAATTATGAAATGCC 57.345 37.500 0.00 0.00 0.00 4.40
779 858 5.539955 AGTGGGTATGAATTATGAAATGCCC 59.460 40.000 1.14 1.14 0.00 5.36
780 859 5.304101 GTGGGTATGAATTATGAAATGCCCA 59.696 40.000 6.29 6.29 39.80 5.36
781 860 6.014327 GTGGGTATGAATTATGAAATGCCCAT 60.014 38.462 12.56 0.00 43.29 4.00
782 861 7.178274 GTGGGTATGAATTATGAAATGCCCATA 59.822 37.037 12.56 0.00 43.29 2.74
783 862 7.900246 TGGGTATGAATTATGAAATGCCCATAT 59.100 33.333 6.29 0.00 37.50 1.78
784 863 8.416329 GGGTATGAATTATGAAATGCCCATATC 58.584 37.037 3.14 0.00 32.98 1.63
785 864 9.193806 GGTATGAATTATGAAATGCCCATATCT 57.806 33.333 0.00 0.00 0.00 1.98
813 895 9.906660 TTTTGCGAATCTTGTTATCATTTTACT 57.093 25.926 0.00 0.00 0.00 2.24
835 917 2.034843 TGGCTGGCGGTAATTGCA 59.965 55.556 0.00 0.00 0.00 4.08
836 918 2.045708 TGGCTGGCGGTAATTGCAG 61.046 57.895 0.00 0.00 0.00 4.41
862 944 3.126073 ACATATACAGCAGTGATGCACG 58.874 45.455 8.62 0.00 39.64 5.34
866 948 4.377708 AGCAGTGATGCACGCGGA 62.378 61.111 12.47 0.00 39.64 5.54
1013 1104 0.442310 ACGCACATCGAAAATCACCG 59.558 50.000 0.00 0.00 41.67 4.94
1015 1106 1.083489 GCACATCGAAAATCACCGGA 58.917 50.000 9.46 0.00 0.00 5.14
1042 1136 1.804151 GACGATCGATCCTCTCCTCTG 59.196 57.143 24.34 4.85 0.00 3.35
1044 1138 0.887933 GATCGATCCTCTCCTCTGCC 59.112 60.000 14.76 0.00 0.00 4.85
1058 1152 2.656646 TGCCGTCGAGCAGAACAT 59.343 55.556 4.55 0.00 38.00 2.71
1063 1157 0.179171 CGTCGAGCAGAACATACGGT 60.179 55.000 0.00 0.00 0.00 4.83
1185 1287 2.100991 GTACGTACCCGACTGGCG 59.899 66.667 15.00 0.00 37.83 5.69
1186 1288 3.814268 TACGTACCCGACTGGCGC 61.814 66.667 0.00 0.00 39.11 6.53
1215 1327 4.403453 GTCCATGTCGTTTTCTTGCATAC 58.597 43.478 0.00 0.00 0.00 2.39
1272 1386 4.142534 CGATGTTGTTGATCTGATTTGGCT 60.143 41.667 0.00 0.00 0.00 4.75
1283 1397 0.934496 GATTTGGCTGCGCGTGTATA 59.066 50.000 8.43 0.00 0.00 1.47
1492 1611 5.443185 TCAAGGCTCTGATTTCAAGTTTG 57.557 39.130 0.00 0.00 0.00 2.93
1495 1614 2.560105 GGCTCTGATTTCAAGTTTGCCT 59.440 45.455 0.00 0.00 35.44 4.75
1508 1627 6.003326 TCAAGTTTGCCTAATGATCTTGTGA 58.997 36.000 0.00 0.00 34.43 3.58
1509 1628 6.660521 TCAAGTTTGCCTAATGATCTTGTGAT 59.339 34.615 0.00 0.00 34.43 3.06
1510 1629 7.828717 TCAAGTTTGCCTAATGATCTTGTGATA 59.171 33.333 0.00 0.00 34.43 2.15
1512 1631 6.261826 AGTTTGCCTAATGATCTTGTGATAGC 59.738 38.462 0.00 0.00 32.19 2.97
1513 1632 4.309933 TGCCTAATGATCTTGTGATAGCG 58.690 43.478 0.00 0.00 32.19 4.26
1514 1633 3.681897 GCCTAATGATCTTGTGATAGCGG 59.318 47.826 0.00 0.00 32.19 5.52
1515 1634 3.681897 CCTAATGATCTTGTGATAGCGGC 59.318 47.826 0.00 0.00 32.19 6.53
1546 1695 6.716628 TCTTGGTTTGATCTGAGCAAGTAATT 59.283 34.615 25.68 0.00 46.19 1.40
1549 1698 7.147312 TGGTTTGATCTGAGCAAGTAATTTTG 58.853 34.615 8.46 0.00 0.00 2.44
1553 1702 4.503741 TCTGAGCAAGTAATTTTGGTGC 57.496 40.909 0.00 0.00 38.76 5.01
1554 1703 3.888323 TCTGAGCAAGTAATTTTGGTGCA 59.112 39.130 0.00 0.00 38.76 4.57
1555 1704 4.340666 TCTGAGCAAGTAATTTTGGTGCAA 59.659 37.500 0.00 0.00 38.76 4.08
1556 1705 4.619973 TGAGCAAGTAATTTTGGTGCAAG 58.380 39.130 0.00 0.00 38.76 4.01
1616 1765 7.934457 ACAATTAAGCATACATGATTCCTGTC 58.066 34.615 0.00 0.00 37.59 3.51
1628 1777 3.436704 TGATTCCTGTCGCATTTTCTGTC 59.563 43.478 0.00 0.00 0.00 3.51
1643 1793 9.982291 GCATTTTCTGTCGTTAAAGATGTATAA 57.018 29.630 0.00 0.00 0.00 0.98
1666 1816 4.402474 AGTTTCAGTTTGAAAAGGACAGGG 59.598 41.667 5.86 0.00 46.53 4.45
1692 2209 9.387123 GTATTTGTCAGAAACTTGTGAGAAATC 57.613 33.333 20.75 12.79 45.11 2.17
1693 2210 6.377327 TTGTCAGAAACTTGTGAGAAATCC 57.623 37.500 0.00 0.00 32.16 3.01
1694 2211 4.821805 TGTCAGAAACTTGTGAGAAATCCC 59.178 41.667 0.00 0.00 30.52 3.85
1695 2212 5.066593 GTCAGAAACTTGTGAGAAATCCCT 58.933 41.667 0.00 0.00 30.52 4.20
1697 2214 5.065914 CAGAAACTTGTGAGAAATCCCTCA 58.934 41.667 0.00 0.00 40.57 3.86
1698 2215 5.532406 CAGAAACTTGTGAGAAATCCCTCAA 59.468 40.000 0.00 0.00 43.94 3.02
1700 2217 3.756117 ACTTGTGAGAAATCCCTCAACC 58.244 45.455 0.00 0.00 43.94 3.77
1701 2218 3.138283 ACTTGTGAGAAATCCCTCAACCA 59.862 43.478 0.00 0.00 43.94 3.67
1702 2219 3.874383 TGTGAGAAATCCCTCAACCAA 57.126 42.857 0.00 0.00 43.94 3.67
1703 2220 4.177537 TGTGAGAAATCCCTCAACCAAA 57.822 40.909 0.00 0.00 43.94 3.28
1704 2221 4.541705 TGTGAGAAATCCCTCAACCAAAA 58.458 39.130 0.00 0.00 43.94 2.44
1734 4062 2.296190 GTGAGAAAAATGGCCTCGGTTT 59.704 45.455 3.32 0.00 0.00 3.27
1745 4073 0.323908 CCTCGGTTTATTTGCCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
1758 4090 4.452733 CCCCACTTCTCCGTCGCC 62.453 72.222 0.00 0.00 0.00 5.54
1775 4107 2.040544 CCGGGAGCACACCATTGAC 61.041 63.158 0.00 0.00 0.00 3.18
1778 4110 2.040544 GGAGCACACCATTGACCCG 61.041 63.158 0.00 0.00 0.00 5.28
1780 4112 0.889186 GAGCACACCATTGACCCGTT 60.889 55.000 0.00 0.00 0.00 4.44
1782 4114 0.387565 GCACACCATTGACCCGTTTT 59.612 50.000 0.00 0.00 0.00 2.43
1783 4115 1.202475 GCACACCATTGACCCGTTTTT 60.202 47.619 0.00 0.00 0.00 1.94
1784 4116 2.738135 CACACCATTGACCCGTTTTTC 58.262 47.619 0.00 0.00 0.00 2.29
1786 4118 0.312729 ACCATTGACCCGTTTTTCGC 59.687 50.000 0.00 0.00 38.35 4.70
1788 4120 0.312416 CATTGACCCGTTTTTCGCCA 59.688 50.000 0.00 0.00 38.35 5.69
1791 4123 1.895231 GACCCGTTTTTCGCCACCT 60.895 57.895 0.00 0.00 38.35 4.00
1794 4126 1.281656 CCGTTTTTCGCCACCTGTC 59.718 57.895 0.00 0.00 38.35 3.51
1799 4131 1.161563 TTTTCGCCACCTGTCGAACC 61.162 55.000 0.00 0.00 43.28 3.62
1800 4132 2.313051 TTTCGCCACCTGTCGAACCA 62.313 55.000 0.00 0.00 43.28 3.67
1803 4135 1.302511 GCCACCTGTCGAACCACAT 60.303 57.895 0.00 0.00 0.00 3.21
1813 4153 4.895961 TGTCGAACCACATACCAACAATA 58.104 39.130 0.00 0.00 0.00 1.90
1817 4157 4.142556 CGAACCACATACCAACAATAACCC 60.143 45.833 0.00 0.00 0.00 4.11
1818 4158 3.703921 ACCACATACCAACAATAACCCC 58.296 45.455 0.00 0.00 0.00 4.95
1819 4159 3.076182 ACCACATACCAACAATAACCCCA 59.924 43.478 0.00 0.00 0.00 4.96
1820 4160 3.445805 CCACATACCAACAATAACCCCAC 59.554 47.826 0.00 0.00 0.00 4.61
1822 4162 4.157656 CACATACCAACAATAACCCCACTG 59.842 45.833 0.00 0.00 0.00 3.66
1823 4163 1.627864 ACCAACAATAACCCCACTGC 58.372 50.000 0.00 0.00 0.00 4.40
1824 4164 0.894835 CCAACAATAACCCCACTGCC 59.105 55.000 0.00 0.00 0.00 4.85
1825 4165 1.549950 CCAACAATAACCCCACTGCCT 60.550 52.381 0.00 0.00 0.00 4.75
1826 4166 1.818674 CAACAATAACCCCACTGCCTC 59.181 52.381 0.00 0.00 0.00 4.70
1827 4167 1.072266 ACAATAACCCCACTGCCTCA 58.928 50.000 0.00 0.00 0.00 3.86
1828 4168 1.271926 ACAATAACCCCACTGCCTCAC 60.272 52.381 0.00 0.00 0.00 3.51
1829 4169 1.004745 CAATAACCCCACTGCCTCACT 59.995 52.381 0.00 0.00 0.00 3.41
1830 4170 0.620556 ATAACCCCACTGCCTCACTG 59.379 55.000 0.00 0.00 0.00 3.66
1843 4209 4.473520 CACTGCCGCCACCCTAGG 62.474 72.222 0.06 0.06 0.00 3.02
1864 4230 0.728843 ATCCCTCTAACCCCCTTCCA 59.271 55.000 0.00 0.00 0.00 3.53
1870 4236 0.624254 CTAACCCCCTTCCACCTTCC 59.376 60.000 0.00 0.00 0.00 3.46
1871 4237 0.847758 TAACCCCCTTCCACCTTCCC 60.848 60.000 0.00 0.00 0.00 3.97
1872 4238 3.347590 CCCCCTTCCACCTTCCCC 61.348 72.222 0.00 0.00 0.00 4.81
1873 4239 3.728373 CCCCTTCCACCTTCCCCG 61.728 72.222 0.00 0.00 0.00 5.73
1874 4240 2.609610 CCCTTCCACCTTCCCCGA 60.610 66.667 0.00 0.00 0.00 5.14
1875 4241 2.669240 CCTTCCACCTTCCCCGAC 59.331 66.667 0.00 0.00 0.00 4.79
1876 4242 2.264794 CTTCCACCTTCCCCGACG 59.735 66.667 0.00 0.00 0.00 5.12
1877 4243 3.952628 CTTCCACCTTCCCCGACGC 62.953 68.421 0.00 0.00 0.00 5.19
1882 4248 4.891727 CCTTCCCCGACGCCGATG 62.892 72.222 0.00 0.00 38.22 3.84
1883 4249 3.833645 CTTCCCCGACGCCGATGA 61.834 66.667 0.00 0.00 38.22 2.92
1884 4250 4.137872 TTCCCCGACGCCGATGAC 62.138 66.667 0.00 0.00 38.22 3.06
1894 4260 2.186903 CCGATGACACCTTCCCCG 59.813 66.667 0.00 0.00 0.00 5.73
1917 4283 0.679505 CCGATGACGACCCCACATAT 59.320 55.000 0.00 0.00 42.66 1.78
1951 4318 6.483640 GCTAGAAAATAAATCCGATGGTGTCT 59.516 38.462 0.00 0.00 0.00 3.41
1957 4324 3.533606 AATCCGATGGTGTCTTCTCTG 57.466 47.619 0.00 0.00 0.00 3.35
1988 4383 7.916450 ACTGCTTCGTACTAATTGAGTAAGATC 59.084 37.037 0.00 0.00 45.08 2.75
2044 4440 0.328450 ACCCCAATCCCATAGAGGCA 60.328 55.000 0.00 0.00 35.39 4.75
2050 4446 3.228453 CAATCCCATAGAGGCAGCATTT 58.772 45.455 0.00 0.00 35.39 2.32
2062 4458 2.115348 CAGCATTTGCATCGATCCAC 57.885 50.000 5.20 0.00 45.16 4.02
2063 4459 0.659427 AGCATTTGCATCGATCCACG 59.341 50.000 5.20 0.00 45.16 4.94
2066 4462 1.093972 ATTTGCATCGATCCACGCAA 58.906 45.000 14.76 14.76 42.29 4.85
2085 4481 0.399949 AGTCAACCCTCACACTCCCA 60.400 55.000 0.00 0.00 0.00 4.37
2156 4604 0.742635 TCGCCATAAATGCTGCGTCA 60.743 50.000 11.54 0.00 46.57 4.35
2160 4608 1.069703 CCATAAATGCTGCGTCATCCG 60.070 52.381 0.00 0.00 40.40 4.18
2167 4615 1.006805 CTGCGTCATCCGGATCTCC 60.007 63.158 15.88 4.14 35.87 3.71
2192 4640 1.677633 GCGCCTTGCCTTCCCTTTA 60.678 57.895 0.00 0.00 37.76 1.85
2193 4641 1.657751 GCGCCTTGCCTTCCCTTTAG 61.658 60.000 0.00 0.00 37.76 1.85
2194 4642 1.657751 CGCCTTGCCTTCCCTTTAGC 61.658 60.000 0.00 0.00 0.00 3.09
2207 4655 5.148651 TCCCTTTAGCTGACAAAGTCTAC 57.851 43.478 0.00 0.00 32.23 2.59
2234 4682 4.441913 CGCCAATTCTAATTTCAGGCCAAT 60.442 41.667 5.01 0.00 33.67 3.16
2237 4685 3.781079 TTCTAATTTCAGGCCAATGCG 57.219 42.857 5.01 0.00 38.85 4.73
2238 4686 2.997980 TCTAATTTCAGGCCAATGCGA 58.002 42.857 5.01 0.00 38.85 5.10
2239 4687 3.554934 TCTAATTTCAGGCCAATGCGAT 58.445 40.909 5.01 0.00 38.85 4.58
2240 4688 3.953612 TCTAATTTCAGGCCAATGCGATT 59.046 39.130 5.01 2.05 38.85 3.34
2241 4689 3.615224 AATTTCAGGCCAATGCGATTT 57.385 38.095 5.01 0.00 38.85 2.17
2242 4690 3.615224 ATTTCAGGCCAATGCGATTTT 57.385 38.095 5.01 0.00 38.85 1.82
2243 4691 4.734398 ATTTCAGGCCAATGCGATTTTA 57.266 36.364 5.01 0.00 38.85 1.52
2244 4692 4.527509 TTTCAGGCCAATGCGATTTTAA 57.472 36.364 5.01 0.00 38.85 1.52
2246 4694 4.527509 TCAGGCCAATGCGATTTTAAAA 57.472 36.364 5.01 2.51 38.85 1.52
2249 4697 6.634805 TCAGGCCAATGCGATTTTAAAAATA 58.365 32.000 5.01 0.00 38.85 1.40
2252 4700 6.705825 AGGCCAATGCGATTTTAAAAATATCC 59.294 34.615 5.01 0.00 38.85 2.59
2303 4751 6.975772 GTGCTCGAGTAATGTTAGATTTCTCT 59.024 38.462 15.13 0.00 35.39 3.10
2304 4752 6.975197 TGCTCGAGTAATGTTAGATTTCTCTG 59.025 38.462 15.13 2.45 32.66 3.35
2313 4761 5.164233 TGTTAGATTTCTCTGCTGTCTTCG 58.836 41.667 0.00 0.00 32.66 3.79
2358 4806 1.452145 GCTGGTTCCGGCTTTTCACA 61.452 55.000 14.64 0.00 35.60 3.58
2359 4807 1.247567 CTGGTTCCGGCTTTTCACAT 58.752 50.000 0.00 0.00 0.00 3.21
2360 4808 0.958091 TGGTTCCGGCTTTTCACATG 59.042 50.000 0.00 0.00 0.00 3.21
2361 4809 0.243636 GGTTCCGGCTTTTCACATGG 59.756 55.000 0.00 0.00 0.00 3.66
2362 4810 1.243902 GTTCCGGCTTTTCACATGGA 58.756 50.000 0.00 0.00 0.00 3.41
2363 4811 1.611491 GTTCCGGCTTTTCACATGGAA 59.389 47.619 0.00 0.00 33.34 3.53
2364 4812 1.988293 TCCGGCTTTTCACATGGAAA 58.012 45.000 0.00 1.40 43.59 3.13
2365 4813 1.611491 TCCGGCTTTTCACATGGAAAC 59.389 47.619 0.00 0.89 44.89 2.78
2366 4814 1.336795 CCGGCTTTTCACATGGAAACC 60.337 52.381 8.36 7.25 44.89 3.27
2367 4815 1.613437 CGGCTTTTCACATGGAAACCT 59.387 47.619 8.36 0.00 44.89 3.50
2368 4816 2.035832 CGGCTTTTCACATGGAAACCTT 59.964 45.455 8.36 0.00 44.89 3.50
2369 4817 3.254657 CGGCTTTTCACATGGAAACCTTA 59.745 43.478 8.36 0.00 44.89 2.69
2370 4818 4.615912 CGGCTTTTCACATGGAAACCTTAG 60.616 45.833 8.36 5.70 44.89 2.18
2371 4819 4.321974 GGCTTTTCACATGGAAACCTTAGG 60.322 45.833 0.00 0.00 44.89 2.69
2372 4820 4.809673 CTTTTCACATGGAAACCTTAGGC 58.190 43.478 0.00 0.00 44.89 3.93
2373 4821 2.507407 TCACATGGAAACCTTAGGCC 57.493 50.000 0.00 0.00 0.00 5.19
2374 4822 1.005450 TCACATGGAAACCTTAGGCCC 59.995 52.381 0.00 0.00 0.00 5.80
2375 4823 1.005924 CACATGGAAACCTTAGGCCCT 59.994 52.381 0.00 0.00 0.00 5.19
2376 4824 1.005924 ACATGGAAACCTTAGGCCCTG 59.994 52.381 0.00 0.00 0.00 4.45
2377 4825 0.033109 ATGGAAACCTTAGGCCCTGC 60.033 55.000 0.00 0.00 0.00 4.85
2378 4826 1.382629 GGAAACCTTAGGCCCTGCA 59.617 57.895 0.00 0.00 0.00 4.41
2379 4827 0.033109 GGAAACCTTAGGCCCTGCAT 60.033 55.000 0.00 0.00 0.00 3.96
2380 4828 1.106285 GAAACCTTAGGCCCTGCATG 58.894 55.000 0.00 0.00 0.00 4.06
2381 4829 0.972471 AAACCTTAGGCCCTGCATGC 60.972 55.000 11.82 11.82 0.00 4.06
2382 4830 2.903855 CCTTAGGCCCTGCATGCG 60.904 66.667 14.09 7.87 0.00 4.73
2383 4831 2.124570 CTTAGGCCCTGCATGCGT 60.125 61.111 14.09 8.37 0.00 5.24
2384 4832 2.438254 TTAGGCCCTGCATGCGTG 60.438 61.111 14.09 8.38 0.00 5.34
2385 4833 3.993614 TTAGGCCCTGCATGCGTGG 62.994 63.158 18.38 18.38 0.00 4.94
2404 4852 2.567049 CCGACACCTCACGGTCTC 59.433 66.667 0.00 0.00 43.24 3.36
2405 4853 2.265904 CCGACACCTCACGGTCTCA 61.266 63.158 0.00 0.00 43.24 3.27
2406 4854 1.210413 CGACACCTCACGGTCTCAG 59.790 63.158 0.00 0.00 43.24 3.35
2407 4855 1.235281 CGACACCTCACGGTCTCAGA 61.235 60.000 0.00 0.00 43.24 3.27
2408 4856 0.241481 GACACCTCACGGTCTCAGAC 59.759 60.000 0.00 0.00 43.24 3.51
2409 4857 0.178987 ACACCTCACGGTCTCAGACT 60.179 55.000 4.40 0.00 43.24 3.24
2410 4858 1.073444 ACACCTCACGGTCTCAGACTA 59.927 52.381 4.40 0.00 43.24 2.59
2411 4859 1.740585 CACCTCACGGTCTCAGACTAG 59.259 57.143 4.40 1.99 43.24 2.57
2412 4860 0.736053 CCTCACGGTCTCAGACTAGC 59.264 60.000 4.40 0.00 32.47 3.42
2413 4861 0.375454 CTCACGGTCTCAGACTAGCG 59.625 60.000 4.40 2.42 42.03 4.26
2414 4862 4.718064 ACGGTCTCAGACTAGCGT 57.282 55.556 4.40 3.11 44.20 5.07
2415 4863 0.522180 CACGGTCTCAGACTAGCGTT 59.478 55.000 4.40 0.00 46.57 4.84
2416 4864 1.068472 CACGGTCTCAGACTAGCGTTT 60.068 52.381 4.40 0.00 46.57 3.60
2417 4865 1.612463 ACGGTCTCAGACTAGCGTTTT 59.388 47.619 4.40 0.00 46.57 2.43
2418 4866 2.251893 CGGTCTCAGACTAGCGTTTTC 58.748 52.381 4.40 0.00 32.47 2.29
2419 4867 2.608268 GGTCTCAGACTAGCGTTTTCC 58.392 52.381 4.40 0.00 32.47 3.13
2420 4868 2.231721 GGTCTCAGACTAGCGTTTTCCT 59.768 50.000 4.40 0.00 32.47 3.36
2421 4869 3.442977 GGTCTCAGACTAGCGTTTTCCTA 59.557 47.826 4.40 0.00 32.47 2.94
2422 4870 4.098196 GGTCTCAGACTAGCGTTTTCCTAT 59.902 45.833 4.40 0.00 32.47 2.57
2423 4871 5.394333 GGTCTCAGACTAGCGTTTTCCTATT 60.394 44.000 4.40 0.00 32.47 1.73
2424 4872 6.100668 GTCTCAGACTAGCGTTTTCCTATTT 58.899 40.000 0.00 0.00 0.00 1.40
2425 4873 7.256286 GTCTCAGACTAGCGTTTTCCTATTTA 58.744 38.462 0.00 0.00 0.00 1.40
2426 4874 7.220491 GTCTCAGACTAGCGTTTTCCTATTTAC 59.780 40.741 0.00 0.00 0.00 2.01
2427 4875 6.335777 TCAGACTAGCGTTTTCCTATTTACC 58.664 40.000 0.00 0.00 0.00 2.85
2428 4876 5.231568 CAGACTAGCGTTTTCCTATTTACCG 59.768 44.000 0.00 0.00 0.00 4.02
2429 4877 3.867493 ACTAGCGTTTTCCTATTTACCGC 59.133 43.478 0.00 0.00 39.91 5.68
2430 4878 2.981898 AGCGTTTTCCTATTTACCGCT 58.018 42.857 0.00 0.00 44.38 5.52
2431 4879 3.340928 AGCGTTTTCCTATTTACCGCTT 58.659 40.909 0.00 0.00 46.71 4.68
2432 4880 4.506758 AGCGTTTTCCTATTTACCGCTTA 58.493 39.130 0.00 0.00 46.71 3.09
2433 4881 5.121105 AGCGTTTTCCTATTTACCGCTTAT 58.879 37.500 0.00 0.00 46.71 1.73
2434 4882 5.587443 AGCGTTTTCCTATTTACCGCTTATT 59.413 36.000 0.00 0.00 46.71 1.40
2435 4883 5.905733 GCGTTTTCCTATTTACCGCTTATTC 59.094 40.000 0.00 0.00 36.94 1.75
2436 4884 6.424683 CGTTTTCCTATTTACCGCTTATTCC 58.575 40.000 0.00 0.00 0.00 3.01
2437 4885 6.424683 GTTTTCCTATTTACCGCTTATTCCG 58.575 40.000 0.00 0.00 0.00 4.30
2438 4886 3.656559 TCCTATTTACCGCTTATTCCGC 58.343 45.455 0.00 0.00 0.00 5.54
2439 4887 3.069872 TCCTATTTACCGCTTATTCCGCA 59.930 43.478 0.00 0.00 0.00 5.69
2440 4888 3.810941 CCTATTTACCGCTTATTCCGCAA 59.189 43.478 0.00 0.00 0.00 4.85
2441 4889 4.273969 CCTATTTACCGCTTATTCCGCAAA 59.726 41.667 0.00 0.00 0.00 3.68
2442 4890 3.474693 TTTACCGCTTATTCCGCAAAC 57.525 42.857 0.00 0.00 0.00 2.93
2443 4891 2.389962 TACCGCTTATTCCGCAAACT 57.610 45.000 0.00 0.00 0.00 2.66
2444 4892 0.802494 ACCGCTTATTCCGCAAACTG 59.198 50.000 0.00 0.00 0.00 3.16
2445 4893 0.523335 CCGCTTATTCCGCAAACTGC 60.523 55.000 0.00 0.00 40.69 4.40
2446 4894 0.523335 CGCTTATTCCGCAAACTGCC 60.523 55.000 0.00 0.00 41.12 4.85
2447 4895 0.523335 GCTTATTCCGCAAACTGCCG 60.523 55.000 0.00 0.00 41.12 5.69
2448 4896 0.523335 CTTATTCCGCAAACTGCCGC 60.523 55.000 0.00 0.00 41.12 6.53
2449 4897 1.928706 TTATTCCGCAAACTGCCGCC 61.929 55.000 0.00 0.00 41.12 6.13
2453 4901 3.496131 CGCAAACTGCCGCCGTAT 61.496 61.111 0.00 0.00 41.12 3.06
2454 4902 2.403586 GCAAACTGCCGCCGTATC 59.596 61.111 0.00 0.00 37.42 2.24
2455 4903 2.701006 CAAACTGCCGCCGTATCG 59.299 61.111 0.00 0.00 0.00 2.92
2456 4904 3.192922 AAACTGCCGCCGTATCGC 61.193 61.111 0.00 0.00 0.00 4.58
2457 4905 3.943479 AAACTGCCGCCGTATCGCA 62.943 57.895 0.00 0.00 0.00 5.10
2462 4910 2.584970 CCGCCGTATCGCACACAT 60.585 61.111 0.00 0.00 0.00 3.21
2463 4911 1.299544 CCGCCGTATCGCACACATA 60.300 57.895 0.00 0.00 0.00 2.29
2464 4912 1.275471 CCGCCGTATCGCACACATAG 61.275 60.000 0.00 0.00 0.00 2.23
2465 4913 1.275471 CGCCGTATCGCACACATAGG 61.275 60.000 0.00 0.00 0.00 2.57
2466 4914 0.031585 GCCGTATCGCACACATAGGA 59.968 55.000 0.00 0.00 0.00 2.94
2467 4915 1.930817 GCCGTATCGCACACATAGGAG 60.931 57.143 0.00 0.00 0.00 3.69
2468 4916 1.335964 CCGTATCGCACACATAGGAGG 60.336 57.143 0.00 0.00 0.00 4.30
2469 4917 1.607148 CGTATCGCACACATAGGAGGA 59.393 52.381 0.00 0.00 0.00 3.71
2470 4918 2.034179 CGTATCGCACACATAGGAGGAA 59.966 50.000 0.00 0.00 0.00 3.36
2471 4919 3.305403 CGTATCGCACACATAGGAGGAAT 60.305 47.826 0.00 0.00 0.00 3.01
2472 4920 2.602257 TCGCACACATAGGAGGAATG 57.398 50.000 0.00 0.00 0.00 2.67
2473 4921 2.107366 TCGCACACATAGGAGGAATGA 58.893 47.619 0.00 0.00 0.00 2.57
2474 4922 2.101415 TCGCACACATAGGAGGAATGAG 59.899 50.000 0.00 0.00 0.00 2.90
2475 4923 2.159043 CGCACACATAGGAGGAATGAGT 60.159 50.000 0.00 0.00 0.00 3.41
2476 4924 3.201290 GCACACATAGGAGGAATGAGTG 58.799 50.000 8.63 8.63 44.08 3.51
2477 4925 3.801698 CACACATAGGAGGAATGAGTGG 58.198 50.000 5.94 0.00 40.25 4.00
2478 4926 2.774234 ACACATAGGAGGAATGAGTGGG 59.226 50.000 0.00 0.00 28.77 4.61
2479 4927 1.771255 ACATAGGAGGAATGAGTGGGC 59.229 52.381 0.00 0.00 0.00 5.36
2480 4928 2.053244 CATAGGAGGAATGAGTGGGCT 58.947 52.381 0.00 0.00 0.00 5.19
2481 4929 2.270434 TAGGAGGAATGAGTGGGCTT 57.730 50.000 0.00 0.00 0.00 4.35
2482 4930 1.376649 AGGAGGAATGAGTGGGCTTT 58.623 50.000 0.00 0.00 0.00 3.51
2483 4931 1.713078 AGGAGGAATGAGTGGGCTTTT 59.287 47.619 0.00 0.00 0.00 2.27
2484 4932 2.110721 AGGAGGAATGAGTGGGCTTTTT 59.889 45.455 0.00 0.00 0.00 1.94
2485 4933 2.493675 GGAGGAATGAGTGGGCTTTTTC 59.506 50.000 0.00 0.00 0.00 2.29
2486 4934 2.162408 GAGGAATGAGTGGGCTTTTTCG 59.838 50.000 0.00 0.00 0.00 3.46
2487 4935 1.886542 GGAATGAGTGGGCTTTTTCGT 59.113 47.619 0.00 0.00 0.00 3.85
2488 4936 2.296190 GGAATGAGTGGGCTTTTTCGTT 59.704 45.455 0.00 0.00 0.00 3.85
2489 4937 3.243737 GGAATGAGTGGGCTTTTTCGTTT 60.244 43.478 0.00 0.00 0.00 3.60
2490 4938 4.368315 GAATGAGTGGGCTTTTTCGTTTT 58.632 39.130 0.00 0.00 0.00 2.43
2491 4939 3.157932 TGAGTGGGCTTTTTCGTTTTG 57.842 42.857 0.00 0.00 0.00 2.44
2492 4940 1.858458 GAGTGGGCTTTTTCGTTTTGC 59.142 47.619 0.00 0.00 0.00 3.68
2493 4941 1.480545 AGTGGGCTTTTTCGTTTTGCT 59.519 42.857 0.00 0.00 0.00 3.91
2494 4942 2.093711 AGTGGGCTTTTTCGTTTTGCTT 60.094 40.909 0.00 0.00 0.00 3.91
2495 4943 2.675844 GTGGGCTTTTTCGTTTTGCTTT 59.324 40.909 0.00 0.00 0.00 3.51
2496 4944 3.126171 GTGGGCTTTTTCGTTTTGCTTTT 59.874 39.130 0.00 0.00 0.00 2.27
2497 4945 3.753797 TGGGCTTTTTCGTTTTGCTTTTT 59.246 34.783 0.00 0.00 0.00 1.94
2498 4946 4.142795 TGGGCTTTTTCGTTTTGCTTTTTC 60.143 37.500 0.00 0.00 0.00 2.29
2499 4947 4.094294 GGGCTTTTTCGTTTTGCTTTTTCT 59.906 37.500 0.00 0.00 0.00 2.52
2500 4948 5.292345 GGGCTTTTTCGTTTTGCTTTTTCTA 59.708 36.000 0.00 0.00 0.00 2.10
2501 4949 6.410845 GGCTTTTTCGTTTTGCTTTTTCTAG 58.589 36.000 0.00 0.00 0.00 2.43
2502 4950 5.896432 GCTTTTTCGTTTTGCTTTTTCTAGC 59.104 36.000 0.00 0.00 41.59 3.42
2503 4951 5.959652 TTTTCGTTTTGCTTTTTCTAGCC 57.040 34.783 0.00 0.00 40.49 3.93
2504 4952 4.911514 TTCGTTTTGCTTTTTCTAGCCT 57.088 36.364 0.00 0.00 40.49 4.58
2505 4953 4.483476 TCGTTTTGCTTTTTCTAGCCTC 57.517 40.909 0.00 0.00 40.49 4.70
2506 4954 4.134563 TCGTTTTGCTTTTTCTAGCCTCT 58.865 39.130 0.00 0.00 40.49 3.69
2507 4955 4.578928 TCGTTTTGCTTTTTCTAGCCTCTT 59.421 37.500 0.00 0.00 40.49 2.85
2508 4956 4.912187 CGTTTTGCTTTTTCTAGCCTCTTC 59.088 41.667 0.00 0.00 40.49 2.87
2509 4957 5.505654 CGTTTTGCTTTTTCTAGCCTCTTCA 60.506 40.000 0.00 0.00 40.49 3.02
2510 4958 6.450545 GTTTTGCTTTTTCTAGCCTCTTCAT 58.549 36.000 0.00 0.00 40.49 2.57
2511 4959 6.655078 TTTGCTTTTTCTAGCCTCTTCATT 57.345 33.333 0.00 0.00 40.49 2.57
2512 4960 6.655078 TTGCTTTTTCTAGCCTCTTCATTT 57.345 33.333 0.00 0.00 40.49 2.32
2513 4961 6.655078 TGCTTTTTCTAGCCTCTTCATTTT 57.345 33.333 0.00 0.00 40.49 1.82
2514 4962 7.054491 TGCTTTTTCTAGCCTCTTCATTTTT 57.946 32.000 0.00 0.00 40.49 1.94
2543 4991 8.917655 TGTTAGTTTTCTTTTACTGTTGTTTGC 58.082 29.630 0.00 0.00 0.00 3.68
2544 4992 6.626199 AGTTTTCTTTTACTGTTGTTTGCG 57.374 33.333 0.00 0.00 0.00 4.85
2545 4993 5.575218 AGTTTTCTTTTACTGTTGTTTGCGG 59.425 36.000 0.00 0.00 0.00 5.69
2546 4994 4.705337 TTCTTTTACTGTTGTTTGCGGT 57.295 36.364 0.00 0.00 0.00 5.68
2547 4995 4.705337 TCTTTTACTGTTGTTTGCGGTT 57.295 36.364 0.00 0.00 0.00 4.44
2548 4996 5.061920 TCTTTTACTGTTGTTTGCGGTTT 57.938 34.783 0.00 0.00 0.00 3.27
2549 4997 6.192234 TCTTTTACTGTTGTTTGCGGTTTA 57.808 33.333 0.00 0.00 0.00 2.01
2550 4998 6.028987 TCTTTTACTGTTGTTTGCGGTTTAC 58.971 36.000 0.00 0.00 0.00 2.01
2551 4999 2.855660 ACTGTTGTTTGCGGTTTACC 57.144 45.000 0.00 0.00 0.00 2.85
2552 5000 2.371306 ACTGTTGTTTGCGGTTTACCT 58.629 42.857 0.00 0.00 0.00 3.08
2553 5001 2.756207 ACTGTTGTTTGCGGTTTACCTT 59.244 40.909 0.00 0.00 0.00 3.50
2554 5002 3.193903 ACTGTTGTTTGCGGTTTACCTTT 59.806 39.130 0.00 0.00 0.00 3.11
2555 5003 4.177783 CTGTTGTTTGCGGTTTACCTTTT 58.822 39.130 0.00 0.00 0.00 2.27
2556 5004 4.566987 TGTTGTTTGCGGTTTACCTTTTT 58.433 34.783 0.00 0.00 0.00 1.94
2587 5035 7.964545 TTAGTTCTTCGTTTTCTTTTTCTGC 57.035 32.000 0.00 0.00 0.00 4.26
2588 5036 6.196079 AGTTCTTCGTTTTCTTTTTCTGCT 57.804 33.333 0.00 0.00 0.00 4.24
2589 5037 6.621613 AGTTCTTCGTTTTCTTTTTCTGCTT 58.378 32.000 0.00 0.00 0.00 3.91
2590 5038 7.090808 AGTTCTTCGTTTTCTTTTTCTGCTTT 58.909 30.769 0.00 0.00 0.00 3.51
2591 5039 7.598869 AGTTCTTCGTTTTCTTTTTCTGCTTTT 59.401 29.630 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.815021 CGCCATTCATAGGATGTGCCA 60.815 52.381 0.00 0.00 40.02 4.92
3 4 1.534163 CAGCGCCATTCATAGGATGTG 59.466 52.381 2.29 0.00 0.00 3.21
6 7 1.696336 AGACAGCGCCATTCATAGGAT 59.304 47.619 2.29 0.00 0.00 3.24
33 34 0.317603 CGTACATTCGGGGAGTAGCG 60.318 60.000 0.00 0.00 0.00 4.26
297 316 7.749539 TTTTCTGAAATCCACGAACTTTTTC 57.250 32.000 3.31 0.00 0.00 2.29
461 483 5.517770 CAGAAGCAGAGTTTTTGGTTTCAAG 59.482 40.000 0.00 0.00 36.49 3.02
469 491 4.031028 CACGTTCAGAAGCAGAGTTTTTG 58.969 43.478 0.00 0.00 0.00 2.44
476 500 3.660501 ATGTACACGTTCAGAAGCAGA 57.339 42.857 0.00 0.00 0.00 4.26
568 643 2.416547 AGATTCAAACTCGCAACCATCG 59.583 45.455 0.00 0.00 0.00 3.84
635 712 1.404035 GGCCCATTAACATGAACCGAC 59.596 52.381 0.00 0.00 31.07 4.79
694 773 4.946160 TGGGGTAAAATTCATGAGGACT 57.054 40.909 0.00 0.00 0.00 3.85
719 798 5.420104 GGTGGATCATTCATGAGGACTTTTT 59.580 40.000 0.00 0.00 40.64 1.94
720 799 4.952335 GGTGGATCATTCATGAGGACTTTT 59.048 41.667 0.00 0.00 40.64 2.27
721 800 4.530875 GGTGGATCATTCATGAGGACTTT 58.469 43.478 0.00 0.00 40.64 2.66
722 801 3.432749 CGGTGGATCATTCATGAGGACTT 60.433 47.826 0.00 0.00 40.64 3.01
723 802 2.103771 CGGTGGATCATTCATGAGGACT 59.896 50.000 0.00 0.00 40.64 3.85
724 803 2.158900 ACGGTGGATCATTCATGAGGAC 60.159 50.000 0.00 0.00 40.64 3.85
725 804 2.118679 ACGGTGGATCATTCATGAGGA 58.881 47.619 0.00 0.00 40.64 3.71
726 805 2.627515 ACGGTGGATCATTCATGAGG 57.372 50.000 0.00 0.00 40.64 3.86
727 806 3.070159 AGGTACGGTGGATCATTCATGAG 59.930 47.826 0.00 0.00 40.64 2.90
728 807 3.038280 AGGTACGGTGGATCATTCATGA 58.962 45.455 0.00 0.00 41.70 3.07
729 808 3.475566 AGGTACGGTGGATCATTCATG 57.524 47.619 0.00 0.00 0.00 3.07
730 809 3.005472 CGTAGGTACGGTGGATCATTCAT 59.995 47.826 1.44 0.00 45.30 2.57
731 810 2.359848 CGTAGGTACGGTGGATCATTCA 59.640 50.000 1.44 0.00 45.30 2.57
732 811 3.009301 CGTAGGTACGGTGGATCATTC 57.991 52.381 1.44 0.00 45.30 2.67
748 827 6.755206 TCATAATTCATACCCACTTCCGTAG 58.245 40.000 0.00 0.00 0.00 3.51
749 828 6.734502 TCATAATTCATACCCACTTCCGTA 57.265 37.500 0.00 0.00 0.00 4.02
750 829 5.623956 TCATAATTCATACCCACTTCCGT 57.376 39.130 0.00 0.00 0.00 4.69
751 830 6.935741 TTTCATAATTCATACCCACTTCCG 57.064 37.500 0.00 0.00 0.00 4.30
752 831 7.147976 GCATTTCATAATTCATACCCACTTCC 58.852 38.462 0.00 0.00 0.00 3.46
753 832 7.147976 GGCATTTCATAATTCATACCCACTTC 58.852 38.462 0.00 0.00 0.00 3.01
754 833 6.041979 GGGCATTTCATAATTCATACCCACTT 59.958 38.462 0.00 0.00 33.65 3.16
755 834 5.539955 GGGCATTTCATAATTCATACCCACT 59.460 40.000 0.00 0.00 33.65 4.00
756 835 5.304101 TGGGCATTTCATAATTCATACCCAC 59.696 40.000 0.00 0.00 38.67 4.61
757 836 5.462240 TGGGCATTTCATAATTCATACCCA 58.538 37.500 0.00 0.00 41.23 4.51
758 837 6.610075 ATGGGCATTTCATAATTCATACCC 57.390 37.500 0.00 0.00 0.00 3.69
759 838 9.193806 AGATATGGGCATTTCATAATTCATACC 57.806 33.333 0.00 0.00 31.80 2.73
793 872 7.429340 CACGGCAGTAAAATGATAACAAGATTC 59.571 37.037 0.00 0.00 0.00 2.52
794 873 7.250569 CACGGCAGTAAAATGATAACAAGATT 58.749 34.615 0.00 0.00 0.00 2.40
800 882 3.377172 AGCCACGGCAGTAAAATGATAAC 59.623 43.478 11.35 0.00 44.88 1.89
802 884 2.942376 CAGCCACGGCAGTAAAATGATA 59.058 45.455 11.35 0.00 44.88 2.15
805 887 0.171007 CCAGCCACGGCAGTAAAATG 59.829 55.000 11.35 0.00 44.88 2.32
827 909 6.082338 GCTGTATATGTCATGCTGCAATTAC 58.918 40.000 6.36 5.93 0.00 1.89
835 917 4.677673 TCACTGCTGTATATGTCATGCT 57.322 40.909 0.00 0.00 0.00 3.79
836 918 4.378149 GCATCACTGCTGTATATGTCATGC 60.378 45.833 15.24 8.91 45.32 4.06
862 944 6.324819 TGAATTCTGAATCAAGATTTTCCGC 58.675 36.000 7.05 0.00 0.00 5.54
926 1010 0.801067 GCGTGTGGGTGTCGATCTAC 60.801 60.000 0.00 0.00 0.00 2.59
927 1011 1.509463 GCGTGTGGGTGTCGATCTA 59.491 57.895 0.00 0.00 0.00 1.98
963 1047 1.894466 TGGCGCGTTATATAGGGCTAA 59.106 47.619 8.43 4.07 44.32 3.09
1013 1104 2.294791 AGGATCGATCGTCTTGATGTCC 59.705 50.000 18.81 10.29 37.47 4.02
1015 1106 3.218453 AGAGGATCGATCGTCTTGATGT 58.782 45.455 33.97 18.32 46.44 3.06
1042 1136 1.472276 CGTATGTTCTGCTCGACGGC 61.472 60.000 0.00 0.00 0.00 5.68
1044 1138 0.179171 ACCGTATGTTCTGCTCGACG 60.179 55.000 0.00 0.00 0.00 5.12
1058 1152 3.845259 GCCATGGGAGCGACCGTA 61.845 66.667 15.13 0.00 40.11 4.02
1157 1258 1.442769 GGTACGTACGTGGAGAGTCA 58.557 55.000 30.25 5.06 0.00 3.41
1186 1288 4.735132 ACGACATGGACGGCGGTG 62.735 66.667 13.24 7.07 34.93 4.94
1215 1327 3.435566 AGATGTCAAGTACGTACGCATG 58.564 45.455 19.49 18.38 0.00 4.06
1272 1386 1.067693 GCTGCATATATACACGCGCA 58.932 50.000 5.73 0.00 0.00 6.09
1283 1397 2.124612 TGCACCTGCGCTGCATAT 60.125 55.556 17.71 0.00 45.83 1.78
1304 1423 1.152567 CTGGCACTTGGGGTCCAAA 60.153 57.895 0.84 0.00 43.44 3.28
1492 1611 3.681897 CCGCTATCACAAGATCATTAGGC 59.318 47.826 0.00 0.00 35.67 3.93
1495 1614 3.664107 GGCCGCTATCACAAGATCATTA 58.336 45.455 0.00 0.00 35.67 1.90
1508 1627 2.743718 CAAGATCCCGGCCGCTAT 59.256 61.111 22.85 15.44 0.00 2.97
1509 1628 3.546543 CCAAGATCCCGGCCGCTA 61.547 66.667 22.85 10.34 0.00 4.26
1512 1631 2.045340 AAACCAAGATCCCGGCCG 60.045 61.111 21.04 21.04 0.00 6.13
1513 1632 0.395724 ATCAAACCAAGATCCCGGCC 60.396 55.000 0.00 0.00 0.00 6.13
1514 1633 1.025041 GATCAAACCAAGATCCCGGC 58.975 55.000 0.00 0.00 36.69 6.13
1515 1634 2.092968 TCAGATCAAACCAAGATCCCGG 60.093 50.000 0.00 0.00 42.19 5.73
1546 1695 1.872952 CACAGATCGACTTGCACCAAA 59.127 47.619 0.00 0.00 0.00 3.28
1549 1698 0.792640 CACACAGATCGACTTGCACC 59.207 55.000 0.00 0.00 0.00 5.01
1616 1765 5.382303 ACATCTTTAACGACAGAAAATGCG 58.618 37.500 0.00 0.00 35.46 4.73
1643 1793 4.402474 CCCTGTCCTTTTCAAACTGAAACT 59.598 41.667 1.37 0.00 45.03 2.66
1666 1816 9.387123 GATTTCTCACAAGTTTCTGACAAATAC 57.613 33.333 0.00 0.00 0.00 1.89
1702 2219 6.128035 GGCCATTTTTCTCACAAGTTGTTTTT 60.128 34.615 5.57 0.00 0.00 1.94
1703 2220 5.353956 GGCCATTTTTCTCACAAGTTGTTTT 59.646 36.000 5.57 0.00 0.00 2.43
1704 2221 4.875536 GGCCATTTTTCTCACAAGTTGTTT 59.124 37.500 5.57 0.00 0.00 2.83
1706 2223 3.706086 AGGCCATTTTTCTCACAAGTTGT 59.294 39.130 5.01 1.64 0.00 3.32
1707 2224 4.301628 GAGGCCATTTTTCTCACAAGTTG 58.698 43.478 5.01 0.00 0.00 3.16
1708 2225 3.004734 CGAGGCCATTTTTCTCACAAGTT 59.995 43.478 5.01 0.00 0.00 2.66
1709 2226 2.554032 CGAGGCCATTTTTCTCACAAGT 59.446 45.455 5.01 0.00 0.00 3.16
1712 2229 1.202879 ACCGAGGCCATTTTTCTCACA 60.203 47.619 5.01 0.00 0.00 3.58
1713 2230 1.534729 ACCGAGGCCATTTTTCTCAC 58.465 50.000 5.01 0.00 0.00 3.51
1715 2232 4.983671 ATAAACCGAGGCCATTTTTCTC 57.016 40.909 5.01 0.00 0.00 2.87
1717 2234 4.092821 GCAAATAAACCGAGGCCATTTTTC 59.907 41.667 5.01 0.00 0.00 2.29
1718 2235 4.000325 GCAAATAAACCGAGGCCATTTTT 59.000 39.130 5.01 0.86 0.00 1.94
1734 4062 0.254747 CGGAGAAGTGGGGGCAAATA 59.745 55.000 0.00 0.00 0.00 1.40
1758 4090 2.040544 GGTCAATGGTGTGCTCCCG 61.041 63.158 0.00 0.00 0.00 5.14
1761 4093 0.889186 AACGGGTCAATGGTGTGCTC 60.889 55.000 0.00 0.00 0.00 4.26
1772 4104 2.188161 GGTGGCGAAAAACGGGTCA 61.188 57.895 0.00 0.00 42.83 4.02
1775 4107 2.125202 GACAGGTGGCGAAAAACGGG 62.125 60.000 0.00 0.00 42.83 5.28
1786 4118 1.674817 GGTATGTGGTTCGACAGGTGG 60.675 57.143 0.00 0.00 0.00 4.61
1788 4120 1.344065 TGGTATGTGGTTCGACAGGT 58.656 50.000 0.00 0.00 0.00 4.00
1791 4123 2.912690 TGTTGGTATGTGGTTCGACA 57.087 45.000 0.00 0.00 0.00 4.35
1794 4126 4.142556 GGGTTATTGTTGGTATGTGGTTCG 60.143 45.833 0.00 0.00 0.00 3.95
1799 4131 4.157656 CAGTGGGGTTATTGTTGGTATGTG 59.842 45.833 0.00 0.00 0.00 3.21
1800 4132 4.340617 CAGTGGGGTTATTGTTGGTATGT 58.659 43.478 0.00 0.00 0.00 2.29
1803 4135 2.555670 GGCAGTGGGGTTATTGTTGGTA 60.556 50.000 0.00 0.00 0.00 3.25
1813 4153 2.839098 CAGTGAGGCAGTGGGGTT 59.161 61.111 0.00 0.00 31.77 4.11
1824 4164 3.376935 CTAGGGTGGCGGCAGTGAG 62.377 68.421 13.91 3.62 0.00 3.51
1825 4165 3.390521 CTAGGGTGGCGGCAGTGA 61.391 66.667 13.91 0.00 0.00 3.41
1826 4166 4.473520 CCTAGGGTGGCGGCAGTG 62.474 72.222 13.91 0.52 0.00 3.66
1843 4209 0.474614 GAAGGGGGTTAGAGGGATGC 59.525 60.000 0.00 0.00 0.00 3.91
1871 4237 3.642778 AAGGTGTCATCGGCGTCGG 62.643 63.158 10.62 0.00 36.95 4.79
1872 4238 2.126071 AAGGTGTCATCGGCGTCG 60.126 61.111 1.15 1.15 37.82 5.12
1873 4239 1.810030 GGAAGGTGTCATCGGCGTC 60.810 63.158 6.85 0.00 0.00 5.19
1874 4240 2.264794 GGAAGGTGTCATCGGCGT 59.735 61.111 6.85 0.00 0.00 5.68
1875 4241 2.511600 GGGAAGGTGTCATCGGCG 60.512 66.667 0.00 0.00 0.00 6.46
1876 4242 2.124695 GGGGAAGGTGTCATCGGC 60.125 66.667 0.00 0.00 0.00 5.54
1877 4243 2.186903 CGGGGAAGGTGTCATCGG 59.813 66.667 0.00 0.00 0.00 4.18
1878 4244 1.153628 GTCGGGGAAGGTGTCATCG 60.154 63.158 0.00 0.00 0.00 3.84
1879 4245 0.391263 GTGTCGGGGAAGGTGTCATC 60.391 60.000 0.00 0.00 0.00 2.92
1880 4246 1.677552 GTGTCGGGGAAGGTGTCAT 59.322 57.895 0.00 0.00 0.00 3.06
1881 4247 2.513259 GGTGTCGGGGAAGGTGTCA 61.513 63.158 0.00 0.00 0.00 3.58
1882 4248 2.346365 GGTGTCGGGGAAGGTGTC 59.654 66.667 0.00 0.00 0.00 3.67
1883 4249 3.622826 CGGTGTCGGGGAAGGTGT 61.623 66.667 0.00 0.00 0.00 4.16
1884 4250 2.656069 ATCGGTGTCGGGGAAGGTG 61.656 63.158 0.00 0.00 36.95 4.00
1885 4251 2.284405 ATCGGTGTCGGGGAAGGT 60.284 61.111 0.00 0.00 36.95 3.50
1886 4252 2.186903 CATCGGTGTCGGGGAAGG 59.813 66.667 0.00 0.00 36.95 3.46
1894 4260 2.183555 GGGGTCGTCATCGGTGTC 59.816 66.667 0.00 0.00 37.69 3.67
1917 4283 8.701895 TCGGATTTATTTTCTAGCTTCTCCTTA 58.298 33.333 0.00 0.00 0.00 2.69
1941 4308 2.164422 TGTAGCAGAGAAGACACCATCG 59.836 50.000 0.00 0.00 0.00 3.84
1951 4318 1.613925 ACGAAGCAGTGTAGCAGAGAA 59.386 47.619 0.00 0.00 36.85 2.87
1957 4324 5.100259 TCAATTAGTACGAAGCAGTGTAGC 58.900 41.667 0.00 0.00 0.00 3.58
2001 4396 2.890311 ACTGACCCGAATGAATTTTGCA 59.110 40.909 0.00 0.00 0.00 4.08
2031 4427 2.872732 CAAATGCTGCCTCTATGGGAT 58.127 47.619 0.00 0.00 34.94 3.85
2044 4440 0.659427 CGTGGATCGATGCAAATGCT 59.341 50.000 21.89 0.00 42.86 3.79
2050 4446 1.079197 ACTTGCGTGGATCGATGCA 60.079 52.632 19.34 19.34 42.86 3.96
2056 4452 0.321653 AGGGTTGACTTGCGTGGATC 60.322 55.000 0.00 0.00 0.00 3.36
2057 4453 0.321653 GAGGGTTGACTTGCGTGGAT 60.322 55.000 0.00 0.00 0.00 3.41
2058 4454 1.070786 GAGGGTTGACTTGCGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
2059 4455 1.227823 TGAGGGTTGACTTGCGTGG 60.228 57.895 0.00 0.00 0.00 4.94
2060 4456 0.813610 TGTGAGGGTTGACTTGCGTG 60.814 55.000 0.00 0.00 0.00 5.34
2061 4457 0.814010 GTGTGAGGGTTGACTTGCGT 60.814 55.000 0.00 0.00 0.00 5.24
2062 4458 0.532862 AGTGTGAGGGTTGACTTGCG 60.533 55.000 0.00 0.00 0.00 4.85
2063 4459 1.230324 GAGTGTGAGGGTTGACTTGC 58.770 55.000 0.00 0.00 0.00 4.01
2066 4462 0.399949 TGGGAGTGTGAGGGTTGACT 60.400 55.000 0.00 0.00 0.00 3.41
2078 4474 2.819595 CGACGGCCAATGGGAGTG 60.820 66.667 2.24 0.00 35.59 3.51
2085 4481 4.752879 CGGGTGTCGACGGCCAAT 62.753 66.667 24.19 0.00 42.43 3.16
2143 4540 0.176910 TCCGGATGACGCAGCATTTA 59.823 50.000 0.00 0.00 42.52 1.40
2144 4541 0.464373 ATCCGGATGACGCAGCATTT 60.464 50.000 18.33 0.00 42.52 2.32
2150 4547 3.129300 GGAGATCCGGATGACGCA 58.871 61.111 24.82 0.00 42.52 5.24
2175 4623 1.657751 GCTAAAGGGAAGGCAAGGCG 61.658 60.000 0.00 0.00 0.00 5.52
2187 4635 6.308282 CGTTAGTAGACTTTGTCAGCTAAAGG 59.692 42.308 11.24 0.00 38.99 3.11
2188 4636 6.183359 GCGTTAGTAGACTTTGTCAGCTAAAG 60.183 42.308 6.01 6.01 40.19 1.85
2192 4640 3.576648 GCGTTAGTAGACTTTGTCAGCT 58.423 45.455 0.46 0.00 34.60 4.24
2193 4641 2.666994 GGCGTTAGTAGACTTTGTCAGC 59.333 50.000 0.46 0.00 34.60 4.26
2194 4642 3.909430 TGGCGTTAGTAGACTTTGTCAG 58.091 45.455 0.46 0.00 34.60 3.51
2207 4655 5.273944 GCCTGAAATTAGAATTGGCGTTAG 58.726 41.667 0.00 0.00 29.14 2.34
2234 4682 9.255304 GCCTATTTGGATATTTTTAAAATCGCA 57.745 29.630 6.17 0.00 38.35 5.10
2252 4700 9.941664 CACATTCTTCTACTATTTGCCTATTTG 57.058 33.333 0.00 0.00 0.00 2.32
2258 4706 5.355350 AGCACACATTCTTCTACTATTTGCC 59.645 40.000 0.00 0.00 0.00 4.52
2259 4707 6.428385 AGCACACATTCTTCTACTATTTGC 57.572 37.500 0.00 0.00 0.00 3.68
2340 4788 1.068333 CATGTGAAAAGCCGGAACCAG 60.068 52.381 5.05 0.00 0.00 4.00
2346 4794 1.336795 GGTTTCCATGTGAAAAGCCGG 60.337 52.381 0.00 0.00 44.30 6.13
2358 4806 0.033109 GCAGGGCCTAAGGTTTCCAT 60.033 55.000 5.28 0.00 0.00 3.41
2359 4807 1.382629 GCAGGGCCTAAGGTTTCCA 59.617 57.895 5.28 0.00 0.00 3.53
2360 4808 0.033109 ATGCAGGGCCTAAGGTTTCC 60.033 55.000 5.28 0.00 0.00 3.13
2361 4809 1.106285 CATGCAGGGCCTAAGGTTTC 58.894 55.000 5.28 0.00 0.00 2.78
2362 4810 0.972471 GCATGCAGGGCCTAAGGTTT 60.972 55.000 14.21 0.00 0.00 3.27
2363 4811 1.380380 GCATGCAGGGCCTAAGGTT 60.380 57.895 14.21 0.00 0.00 3.50
2364 4812 2.276740 GCATGCAGGGCCTAAGGT 59.723 61.111 14.21 0.00 0.00 3.50
2365 4813 2.903855 CGCATGCAGGGCCTAAGG 60.904 66.667 19.57 0.00 0.00 2.69
2366 4814 2.124570 ACGCATGCAGGGCCTAAG 60.125 61.111 19.57 0.00 0.00 2.18
2367 4815 2.438254 CACGCATGCAGGGCCTAA 60.438 61.111 19.57 0.00 0.00 2.69
2368 4816 4.488136 CCACGCATGCAGGGCCTA 62.488 66.667 19.57 0.00 0.00 3.93
2394 4842 0.375454 CGCTAGTCTGAGACCGTGAG 59.625 60.000 9.33 3.23 32.18 3.51
2395 4843 0.321387 ACGCTAGTCTGAGACCGTGA 60.321 55.000 13.17 0.00 29.88 4.35
2396 4844 0.522180 AACGCTAGTCTGAGACCGTG 59.478 55.000 14.33 12.26 31.02 4.94
2397 4845 1.245732 AAACGCTAGTCTGAGACCGT 58.754 50.000 9.33 9.20 31.63 4.83
2398 4846 2.251893 GAAAACGCTAGTCTGAGACCG 58.748 52.381 9.33 8.53 32.18 4.79
2399 4847 2.231721 AGGAAAACGCTAGTCTGAGACC 59.768 50.000 9.33 0.00 32.18 3.85
2400 4848 3.579335 AGGAAAACGCTAGTCTGAGAC 57.421 47.619 3.98 3.98 0.00 3.36
2401 4849 5.916661 AATAGGAAAACGCTAGTCTGAGA 57.083 39.130 0.00 0.00 0.00 3.27
2402 4850 6.476053 GGTAAATAGGAAAACGCTAGTCTGAG 59.524 42.308 0.00 0.00 0.00 3.35
2403 4851 6.335777 GGTAAATAGGAAAACGCTAGTCTGA 58.664 40.000 0.00 0.00 0.00 3.27
2404 4852 5.231568 CGGTAAATAGGAAAACGCTAGTCTG 59.768 44.000 0.00 0.00 0.00 3.51
2405 4853 5.346522 CGGTAAATAGGAAAACGCTAGTCT 58.653 41.667 0.00 0.00 0.00 3.24
2406 4854 4.026228 GCGGTAAATAGGAAAACGCTAGTC 60.026 45.833 0.00 0.00 41.99 2.59
2407 4855 3.867493 GCGGTAAATAGGAAAACGCTAGT 59.133 43.478 0.00 0.00 41.99 2.57
2408 4856 4.448363 GCGGTAAATAGGAAAACGCTAG 57.552 45.455 0.00 0.00 41.99 3.42
2411 4859 3.752412 AAGCGGTAAATAGGAAAACGC 57.248 42.857 0.00 0.00 45.15 4.84
2412 4860 6.424683 GGAATAAGCGGTAAATAGGAAAACG 58.575 40.000 0.00 0.00 0.00 3.60
2413 4861 6.424683 CGGAATAAGCGGTAAATAGGAAAAC 58.575 40.000 0.00 0.00 0.00 2.43
2414 4862 5.007921 GCGGAATAAGCGGTAAATAGGAAAA 59.992 40.000 0.00 0.00 0.00 2.29
2415 4863 4.512571 GCGGAATAAGCGGTAAATAGGAAA 59.487 41.667 0.00 0.00 0.00 3.13
2416 4864 4.060205 GCGGAATAAGCGGTAAATAGGAA 58.940 43.478 0.00 0.00 0.00 3.36
2417 4865 3.069872 TGCGGAATAAGCGGTAAATAGGA 59.930 43.478 0.00 0.00 37.44 2.94
2418 4866 3.395639 TGCGGAATAAGCGGTAAATAGG 58.604 45.455 0.00 0.00 37.44 2.57
2419 4867 5.007332 AGTTTGCGGAATAAGCGGTAAATAG 59.993 40.000 0.00 0.00 37.44 1.73
2420 4868 4.877251 AGTTTGCGGAATAAGCGGTAAATA 59.123 37.500 0.00 0.00 37.44 1.40
2421 4869 3.692593 AGTTTGCGGAATAAGCGGTAAAT 59.307 39.130 0.00 0.00 37.44 1.40
2422 4870 3.075884 AGTTTGCGGAATAAGCGGTAAA 58.924 40.909 0.00 0.00 37.44 2.01
2423 4871 2.417239 CAGTTTGCGGAATAAGCGGTAA 59.583 45.455 0.00 0.00 37.44 2.85
2424 4872 2.004017 CAGTTTGCGGAATAAGCGGTA 58.996 47.619 0.00 0.00 37.44 4.02
2425 4873 0.802494 CAGTTTGCGGAATAAGCGGT 59.198 50.000 0.00 0.00 37.44 5.68
2426 4874 0.523335 GCAGTTTGCGGAATAAGCGG 60.523 55.000 0.00 0.00 37.44 5.52
2427 4875 0.523335 GGCAGTTTGCGGAATAAGCG 60.523 55.000 0.00 0.00 46.21 4.68
2428 4876 0.523335 CGGCAGTTTGCGGAATAAGC 60.523 55.000 2.85 0.00 46.21 3.09
2429 4877 0.523335 GCGGCAGTTTGCGGAATAAG 60.523 55.000 12.03 0.00 46.21 1.73
2430 4878 1.504446 GCGGCAGTTTGCGGAATAA 59.496 52.632 12.03 0.00 46.21 1.40
2431 4879 2.403378 GGCGGCAGTTTGCGGAATA 61.403 57.895 3.07 0.00 46.21 1.75
2432 4880 3.747976 GGCGGCAGTTTGCGGAAT 61.748 61.111 3.07 0.00 46.21 3.01
2436 4884 3.434566 GATACGGCGGCAGTTTGCG 62.435 63.158 11.71 1.50 46.21 4.85
2437 4885 2.403586 GATACGGCGGCAGTTTGC 59.596 61.111 11.71 0.00 44.08 3.68
2438 4886 2.701006 CGATACGGCGGCAGTTTG 59.299 61.111 11.71 0.00 0.00 2.93
2439 4887 3.192922 GCGATACGGCGGCAGTTT 61.193 61.111 11.71 3.15 0.00 2.66
2440 4888 4.444838 TGCGATACGGCGGCAGTT 62.445 61.111 11.71 0.00 35.06 3.16
2445 4893 1.275471 CTATGTGTGCGATACGGCGG 61.275 60.000 13.24 0.00 35.06 6.13
2446 4894 1.275471 CCTATGTGTGCGATACGGCG 61.275 60.000 4.80 4.80 35.06 6.46
2447 4895 0.031585 TCCTATGTGTGCGATACGGC 59.968 55.000 0.00 0.00 0.00 5.68
2448 4896 1.335964 CCTCCTATGTGTGCGATACGG 60.336 57.143 0.00 0.00 0.00 4.02
2449 4897 1.607148 TCCTCCTATGTGTGCGATACG 59.393 52.381 0.00 0.00 0.00 3.06
2450 4898 3.728076 TTCCTCCTATGTGTGCGATAC 57.272 47.619 0.00 0.00 0.00 2.24
2451 4899 3.895041 TCATTCCTCCTATGTGTGCGATA 59.105 43.478 0.00 0.00 0.00 2.92
2452 4900 2.700371 TCATTCCTCCTATGTGTGCGAT 59.300 45.455 0.00 0.00 0.00 4.58
2453 4901 2.101415 CTCATTCCTCCTATGTGTGCGA 59.899 50.000 0.00 0.00 0.00 5.10
2454 4902 2.159043 ACTCATTCCTCCTATGTGTGCG 60.159 50.000 0.00 0.00 30.88 5.34
2455 4903 3.201290 CACTCATTCCTCCTATGTGTGC 58.799 50.000 0.00 0.00 39.29 4.57
2456 4904 3.432749 CCCACTCATTCCTCCTATGTGTG 60.433 52.174 0.00 0.00 42.63 3.82
2457 4905 2.774234 CCCACTCATTCCTCCTATGTGT 59.226 50.000 0.00 0.00 31.84 3.72
2458 4906 2.486191 GCCCACTCATTCCTCCTATGTG 60.486 54.545 0.00 0.00 0.00 3.21
2459 4907 1.771255 GCCCACTCATTCCTCCTATGT 59.229 52.381 0.00 0.00 0.00 2.29
2460 4908 2.053244 AGCCCACTCATTCCTCCTATG 58.947 52.381 0.00 0.00 0.00 2.23
2461 4909 2.503869 AGCCCACTCATTCCTCCTAT 57.496 50.000 0.00 0.00 0.00 2.57
2462 4910 2.270434 AAGCCCACTCATTCCTCCTA 57.730 50.000 0.00 0.00 0.00 2.94
2463 4911 1.376649 AAAGCCCACTCATTCCTCCT 58.623 50.000 0.00 0.00 0.00 3.69
2464 4912 2.222227 AAAAGCCCACTCATTCCTCC 57.778 50.000 0.00 0.00 0.00 4.30
2465 4913 2.162408 CGAAAAAGCCCACTCATTCCTC 59.838 50.000 0.00 0.00 0.00 3.71
2466 4914 2.162681 CGAAAAAGCCCACTCATTCCT 58.837 47.619 0.00 0.00 0.00 3.36
2467 4915 1.886542 ACGAAAAAGCCCACTCATTCC 59.113 47.619 0.00 0.00 0.00 3.01
2468 4916 3.643159 AACGAAAAAGCCCACTCATTC 57.357 42.857 0.00 0.00 0.00 2.67
2469 4917 4.119136 CAAAACGAAAAAGCCCACTCATT 58.881 39.130 0.00 0.00 0.00 2.57
2470 4918 3.716601 CAAAACGAAAAAGCCCACTCAT 58.283 40.909 0.00 0.00 0.00 2.90
2471 4919 2.737039 GCAAAACGAAAAAGCCCACTCA 60.737 45.455 0.00 0.00 0.00 3.41
2472 4920 1.858458 GCAAAACGAAAAAGCCCACTC 59.142 47.619 0.00 0.00 0.00 3.51
2473 4921 1.480545 AGCAAAACGAAAAAGCCCACT 59.519 42.857 0.00 0.00 0.00 4.00
2474 4922 1.934589 AGCAAAACGAAAAAGCCCAC 58.065 45.000 0.00 0.00 0.00 4.61
2475 4923 2.682155 AAGCAAAACGAAAAAGCCCA 57.318 40.000 0.00 0.00 0.00 5.36
2476 4924 4.094294 AGAAAAAGCAAAACGAAAAAGCCC 59.906 37.500 0.00 0.00 0.00 5.19
2477 4925 5.216566 AGAAAAAGCAAAACGAAAAAGCC 57.783 34.783 0.00 0.00 0.00 4.35
2478 4926 5.896432 GCTAGAAAAAGCAAAACGAAAAAGC 59.104 36.000 0.00 0.00 42.30 3.51
2479 4927 6.255670 AGGCTAGAAAAAGCAAAACGAAAAAG 59.744 34.615 0.00 0.00 44.64 2.27
2480 4928 6.103330 AGGCTAGAAAAAGCAAAACGAAAAA 58.897 32.000 0.00 0.00 44.64 1.94
2481 4929 5.656480 AGGCTAGAAAAAGCAAAACGAAAA 58.344 33.333 0.00 0.00 44.64 2.29
2482 4930 5.067283 AGAGGCTAGAAAAAGCAAAACGAAA 59.933 36.000 0.00 0.00 44.64 3.46
2483 4931 4.578928 AGAGGCTAGAAAAAGCAAAACGAA 59.421 37.500 0.00 0.00 44.64 3.85
2484 4932 4.134563 AGAGGCTAGAAAAAGCAAAACGA 58.865 39.130 0.00 0.00 44.64 3.85
2485 4933 4.489679 AGAGGCTAGAAAAAGCAAAACG 57.510 40.909 0.00 0.00 44.64 3.60
2486 4934 5.831997 TGAAGAGGCTAGAAAAAGCAAAAC 58.168 37.500 0.00 0.00 44.64 2.43
2487 4935 6.655078 ATGAAGAGGCTAGAAAAAGCAAAA 57.345 33.333 0.00 0.00 44.64 2.44
2488 4936 6.655078 AATGAAGAGGCTAGAAAAAGCAAA 57.345 33.333 0.00 0.00 44.64 3.68
2489 4937 6.655078 AAATGAAGAGGCTAGAAAAAGCAA 57.345 33.333 0.00 0.00 44.64 3.91
2490 4938 6.655078 AAAATGAAGAGGCTAGAAAAAGCA 57.345 33.333 0.00 0.00 44.64 3.91
2517 4965 8.917655 GCAAACAACAGTAAAAGAAAACTAACA 58.082 29.630 0.00 0.00 0.00 2.41
2518 4966 8.099704 CGCAAACAACAGTAAAAGAAAACTAAC 58.900 33.333 0.00 0.00 0.00 2.34
2519 4967 7.273815 CCGCAAACAACAGTAAAAGAAAACTAA 59.726 33.333 0.00 0.00 0.00 2.24
2520 4968 6.748198 CCGCAAACAACAGTAAAAGAAAACTA 59.252 34.615 0.00 0.00 0.00 2.24
2521 4969 5.575218 CCGCAAACAACAGTAAAAGAAAACT 59.425 36.000 0.00 0.00 0.00 2.66
2522 4970 5.346551 ACCGCAAACAACAGTAAAAGAAAAC 59.653 36.000 0.00 0.00 0.00 2.43
2523 4971 5.471257 ACCGCAAACAACAGTAAAAGAAAA 58.529 33.333 0.00 0.00 0.00 2.29
2524 4972 5.061920 ACCGCAAACAACAGTAAAAGAAA 57.938 34.783 0.00 0.00 0.00 2.52
2525 4973 4.705337 ACCGCAAACAACAGTAAAAGAA 57.295 36.364 0.00 0.00 0.00 2.52
2526 4974 4.705337 AACCGCAAACAACAGTAAAAGA 57.295 36.364 0.00 0.00 0.00 2.52
2527 4975 5.230516 GGTAAACCGCAAACAACAGTAAAAG 59.769 40.000 0.00 0.00 0.00 2.27
2528 4976 5.100943 GGTAAACCGCAAACAACAGTAAAA 58.899 37.500 0.00 0.00 0.00 1.52
2529 4977 4.398673 AGGTAAACCGCAAACAACAGTAAA 59.601 37.500 0.00 0.00 42.08 2.01
2530 4978 3.946558 AGGTAAACCGCAAACAACAGTAA 59.053 39.130 0.00 0.00 42.08 2.24
2531 4979 3.543665 AGGTAAACCGCAAACAACAGTA 58.456 40.909 0.00 0.00 42.08 2.74
2532 4980 2.371306 AGGTAAACCGCAAACAACAGT 58.629 42.857 0.00 0.00 42.08 3.55
2533 4981 3.430333 AAGGTAAACCGCAAACAACAG 57.570 42.857 0.00 0.00 42.08 3.16
2534 4982 3.870633 AAAGGTAAACCGCAAACAACA 57.129 38.095 0.00 0.00 42.08 3.33
2561 5009 8.856247 GCAGAAAAAGAAAACGAAGAACTAAAA 58.144 29.630 0.00 0.00 0.00 1.52
2562 5010 8.241367 AGCAGAAAAAGAAAACGAAGAACTAAA 58.759 29.630 0.00 0.00 0.00 1.85
2563 5011 7.758495 AGCAGAAAAAGAAAACGAAGAACTAA 58.242 30.769 0.00 0.00 0.00 2.24
2564 5012 7.316544 AGCAGAAAAAGAAAACGAAGAACTA 57.683 32.000 0.00 0.00 0.00 2.24
2565 5013 6.196079 AGCAGAAAAAGAAAACGAAGAACT 57.804 33.333 0.00 0.00 0.00 3.01
2566 5014 6.871044 AAGCAGAAAAAGAAAACGAAGAAC 57.129 33.333 0.00 0.00 0.00 3.01
2567 5015 7.883229 AAAAGCAGAAAAAGAAAACGAAGAA 57.117 28.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.