Multiple sequence alignment - TraesCS6A01G381800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G381800 chr6A 100.000 7319 0 0 786 8104 601221989 601229307 0.000000e+00 13516.0
1 TraesCS6A01G381800 chr6A 100.000 475 0 0 1 475 601221204 601221678 0.000000e+00 878.0
2 TraesCS6A01G381800 chr6D 96.364 3988 114 12 842 4824 454930692 454934653 0.000000e+00 6532.0
3 TraesCS6A01G381800 chr6D 93.836 3212 142 27 4904 8104 454934653 454937819 0.000000e+00 4783.0
4 TraesCS6A01G381800 chr6D 98.261 115 2 0 359 473 454930447 454930561 1.380000e-47 202.0
5 TraesCS6A01G381800 chr6D 86.875 160 15 2 7916 8069 351246503 351246344 3.010000e-39 174.0
6 TraesCS6A01G381800 chr6D 93.750 96 6 0 4815 4910 199210416 199210321 2.360000e-30 145.0
7 TraesCS6A01G381800 chr6B 96.810 3824 101 9 842 4660 692024683 692028490 0.000000e+00 6366.0
8 TraesCS6A01G381800 chr6B 89.010 2020 135 42 6133 8104 692030102 692032082 0.000000e+00 2420.0
9 TraesCS6A01G381800 chr6B 94.835 1239 47 10 4904 6137 692028557 692029783 0.000000e+00 1917.0
10 TraesCS6A01G381800 chr6B 87.421 159 15 1 7916 8069 683376234 683376076 2.320000e-40 178.0
11 TraesCS6A01G381800 chr6B 94.681 94 5 0 4810 4903 646750050 646750143 6.550000e-31 147.0
12 TraesCS6A01G381800 chr6B 92.157 102 6 2 4819 4918 551951954 551951853 8.480000e-30 143.0
13 TraesCS6A01G381800 chr6B 86.179 123 10 5 355 473 692024247 692024366 8.540000e-25 126.0
14 TraesCS6A01G381800 chr6B 94.286 70 3 1 4755 4824 692028489 692028557 1.110000e-18 106.0
15 TraesCS6A01G381800 chr6B 97.561 41 1 0 787 827 692024609 692024649 4.060000e-08 71.3
16 TraesCS6A01G381800 chr5A 87.303 2914 271 51 1956 4821 88025097 88027959 0.000000e+00 3240.0
17 TraesCS6A01G381800 chr5A 84.333 817 97 19 976 1765 88023854 88024666 0.000000e+00 771.0
18 TraesCS6A01G381800 chr5A 81.594 853 97 23 5222 6038 88028309 88029137 0.000000e+00 651.0
19 TraesCS6A01G381800 chr5A 80.039 516 67 21 6316 6820 88029424 88029914 4.650000e-92 350.0
20 TraesCS6A01G381800 chr5A 88.750 160 12 2 7916 8069 206730637 206730796 2.990000e-44 191.0
21 TraesCS6A01G381800 chr5A 75.828 302 43 10 4919 5205 88027963 88028249 8.540000e-25 126.0
22 TraesCS6A01G381800 chr5D 87.239 2829 265 50 1956 4737 94065682 94068461 0.000000e+00 3136.0
23 TraesCS6A01G381800 chr5D 89.823 963 89 7 3470 4426 9377195 9378154 0.000000e+00 1227.0
24 TraesCS6A01G381800 chr5D 88.842 950 94 8 3641 4584 9371652 9372595 0.000000e+00 1157.0
25 TraesCS6A01G381800 chr5D 87.487 927 92 14 3662 4584 9353900 9354806 0.000000e+00 1048.0
26 TraesCS6A01G381800 chr5D 82.834 1002 125 29 976 1946 94064408 94065393 0.000000e+00 854.0
27 TraesCS6A01G381800 chr5D 87.269 487 42 14 2815 3295 9376677 9377149 9.250000e-149 538.0
28 TraesCS6A01G381800 chr5D 80.458 568 61 21 5566 6116 94069276 94069810 9.860000e-104 388.0
29 TraesCS6A01G381800 chr5D 85.921 277 34 2 5290 5563 94068958 94069232 2.860000e-74 291.0
30 TraesCS6A01G381800 chr5D 91.391 151 10 3 2815 2964 9371508 9371656 3.830000e-48 204.0
31 TraesCS6A01G381800 chr5D 90.000 160 10 2 7916 8069 150835568 150835727 1.380000e-47 202.0
32 TraesCS6A01G381800 chr5D 79.125 297 44 11 4924 5205 94068521 94068814 1.070000e-43 189.0
33 TraesCS6A01G381800 chr5B 87.670 1687 130 37 1956 3608 101416634 101418276 0.000000e+00 1892.0
34 TraesCS6A01G381800 chr5B 86.261 1201 133 20 3631 4821 101418382 101419560 0.000000e+00 1275.0
35 TraesCS6A01G381800 chr5B 82.981 993 125 26 984 1946 101415364 101416342 0.000000e+00 857.0
36 TraesCS6A01G381800 chr5B 83.077 715 77 18 5222 5915 101419925 101420616 1.930000e-170 610.0
37 TraesCS6A01G381800 chr5B 81.352 429 51 15 6316 6739 101421060 101421464 1.010000e-83 322.0
38 TraesCS6A01G381800 chr2B 85.373 1634 186 23 2968 4590 371892632 371894223 0.000000e+00 1644.0
39 TraesCS6A01G381800 chr3D 87.156 654 62 10 2815 3462 170178432 170177795 0.000000e+00 723.0
40 TraesCS6A01G381800 chr3D 90.090 111 8 3 4797 4906 197182409 197182301 3.050000e-29 141.0
41 TraesCS6A01G381800 chr3A 86.243 567 60 9 2903 3462 207777239 207776684 4.190000e-167 599.0
42 TraesCS6A01G381800 chr3A 93.574 249 16 0 97 345 393485838 393486086 9.930000e-99 372.0
43 TraesCS6A01G381800 chr3A 83.425 181 21 4 7902 8076 151559211 151559034 8.420000e-35 159.0
44 TraesCS6A01G381800 chr7A 93.307 254 14 3 97 349 496837549 496837298 9.930000e-99 372.0
45 TraesCS6A01G381800 chr7A 91.954 261 18 3 97 356 592922241 592922499 5.980000e-96 363.0
46 TraesCS6A01G381800 chr2A 93.281 253 16 1 97 349 48332986 48333237 9.930000e-99 372.0
47 TraesCS6A01G381800 chr2A 93.227 251 16 1 97 346 778156933 778157183 1.280000e-97 368.0
48 TraesCS6A01G381800 chr2A 85.802 162 17 2 7913 8068 621387685 621387846 5.030000e-37 167.0
49 TraesCS6A01G381800 chr2A 90.090 111 6 5 4817 4925 432581627 432581734 1.100000e-28 139.0
50 TraesCS6A01G381800 chr7D 92.607 257 19 0 97 353 548476326 548476582 3.570000e-98 370.0
51 TraesCS6A01G381800 chr7D 91.635 263 19 3 97 358 127559430 127559170 2.150000e-95 361.0
52 TraesCS6A01G381800 chr4A 93.548 248 16 0 97 344 65514772 65515019 3.570000e-98 370.0
53 TraesCS6A01G381800 chr4A 86.250 160 16 2 7916 8069 683889277 683889118 1.400000e-37 169.0
54 TraesCS6A01G381800 chr4A 93.814 97 5 1 4808 4903 511040582 511040486 2.360000e-30 145.0
55 TraesCS6A01G381800 chr2D 91.667 264 19 3 97 359 56531779 56532040 5.980000e-96 363.0
56 TraesCS6A01G381800 chr2D 96.591 88 3 0 4818 4905 302248012 302248099 6.550000e-31 147.0
57 TraesCS6A01G381800 chr2D 93.000 100 3 4 4809 4904 382455926 382456025 8.480000e-30 143.0
58 TraesCS6A01G381800 chr7B 85.802 162 17 2 7914 8069 382331928 382332089 5.030000e-37 167.0
59 TraesCS6A01G381800 chr4D 84.483 174 19 3 7916 8083 16652999 16653170 1.810000e-36 165.0
60 TraesCS6A01G381800 chr4B 92.000 100 6 1 4812 4911 192792740 192792837 1.100000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G381800 chr6A 601221204 601229307 8103 False 7197.000000 13516 100.000000 1 8104 2 chr6A.!!$F1 8103
1 TraesCS6A01G381800 chr6D 454930447 454937819 7372 False 3839.000000 6532 96.153667 359 8104 3 chr6D.!!$F1 7745
2 TraesCS6A01G381800 chr6B 692024247 692032082 7835 False 1834.383333 6366 93.113500 355 8104 6 chr6B.!!$F2 7749
3 TraesCS6A01G381800 chr5A 88023854 88029914 6060 False 1027.600000 3240 81.819400 976 6820 5 chr5A.!!$F2 5844
4 TraesCS6A01G381800 chr5D 9353900 9354806 906 False 1048.000000 1048 87.487000 3662 4584 1 chr5D.!!$F1 922
5 TraesCS6A01G381800 chr5D 94064408 94069810 5402 False 971.600000 3136 83.115400 976 6116 5 chr5D.!!$F5 5140
6 TraesCS6A01G381800 chr5D 9376677 9378154 1477 False 882.500000 1227 88.546000 2815 4426 2 chr5D.!!$F4 1611
7 TraesCS6A01G381800 chr5D 9371508 9372595 1087 False 680.500000 1157 90.116500 2815 4584 2 chr5D.!!$F3 1769
8 TraesCS6A01G381800 chr5B 101415364 101421464 6100 False 991.200000 1892 84.268200 984 6739 5 chr5B.!!$F1 5755
9 TraesCS6A01G381800 chr2B 371892632 371894223 1591 False 1644.000000 1644 85.373000 2968 4590 1 chr2B.!!$F1 1622
10 TraesCS6A01G381800 chr3D 170177795 170178432 637 True 723.000000 723 87.156000 2815 3462 1 chr3D.!!$R1 647
11 TraesCS6A01G381800 chr3A 207776684 207777239 555 True 599.000000 599 86.243000 2903 3462 1 chr3A.!!$R2 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.238289 CGCATGAACCGGCATATTCC 59.762 55.000 0.00 0.00 0.00 3.01 F
106 107 0.396435 TTCTGGATCTGCACGTTGGT 59.604 50.000 0.00 0.00 0.00 3.67 F
248 249 0.841356 GCGTTAAACGTGTTTGGTGC 59.159 50.000 8.19 5.33 44.73 5.01 F
1286 1342 0.951040 GCGTGGAGGAGGTCTTTGTG 60.951 60.000 0.00 0.00 0.00 3.33 F
1990 2341 1.571460 CTGTCGCTTGTGCCTCAAC 59.429 57.895 0.00 0.00 35.36 3.18 F
3031 3409 3.633774 GCGTAGTTGCGACTGAAAC 57.366 52.632 17.36 6.15 36.60 2.78 F
4108 4611 1.539496 GCGTTACTGTGGTTGTCAGGA 60.539 52.381 0.00 0.00 37.25 3.86 F
5409 6000 2.715749 TCATGAGGGGTGCATTAGTG 57.284 50.000 0.00 0.00 0.00 2.74 F
6223 7231 0.102120 ATTGTTGTGTTGGTGCACGG 59.898 50.000 11.45 0.00 41.94 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1651 1715 0.393537 GGAGTGACCTGGAATGGCAG 60.394 60.000 0.00 0.00 35.41 4.85 R
1772 1837 4.773323 AATGCTAGGTTTTGCTCTGAAC 57.227 40.909 0.00 0.00 0.00 3.18 R
1801 1866 4.853468 TTGGGTAATAGCCATCAGACAA 57.147 40.909 12.37 0.00 46.30 3.18 R
3170 3575 3.157087 ACAGCCCATGAACCTTAAACAG 58.843 45.455 0.00 0.00 0.00 3.16 R
3614 4110 4.406003 TCCTAAAGGAGAAGTGGATAGCAC 59.594 45.833 0.00 0.00 39.78 4.40 R
4751 5259 1.201414 TGCAATGTCATCTGCTTGCAG 59.799 47.619 15.74 15.74 46.43 4.41 R
5961 6646 2.396590 ACCTGACAACGAACACACTT 57.603 45.000 0.00 0.00 0.00 3.16 R
7031 8116 0.037046 GCCACTGCCAAGGAAAATGG 60.037 55.000 0.00 0.00 41.08 3.16 R
7719 8834 1.024579 AACAAAGCACGATAGGCCGG 61.025 55.000 0.00 0.00 43.77 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.034721 ACGAGCGGTAGAGAGAGATAG 57.965 52.381 0.55 0.00 0.00 2.08
21 22 2.629137 ACGAGCGGTAGAGAGAGATAGA 59.371 50.000 0.55 0.00 0.00 1.98
22 23 3.259876 ACGAGCGGTAGAGAGAGATAGAT 59.740 47.826 0.55 0.00 0.00 1.98
23 24 3.863424 CGAGCGGTAGAGAGAGATAGATC 59.137 52.174 0.00 0.00 0.00 2.75
24 25 3.857052 AGCGGTAGAGAGAGATAGATCG 58.143 50.000 0.00 0.00 0.00 3.69
25 26 2.350498 GCGGTAGAGAGAGATAGATCGC 59.650 54.545 0.00 0.00 0.00 4.58
26 27 3.591023 CGGTAGAGAGAGATAGATCGCA 58.409 50.000 0.00 0.00 0.00 5.10
27 28 4.188462 CGGTAGAGAGAGATAGATCGCAT 58.812 47.826 0.00 0.00 0.00 4.73
28 29 4.033932 CGGTAGAGAGAGATAGATCGCATG 59.966 50.000 0.00 0.00 0.00 4.06
29 30 5.182487 GGTAGAGAGAGATAGATCGCATGA 58.818 45.833 0.00 0.00 0.00 3.07
30 31 5.645929 GGTAGAGAGAGATAGATCGCATGAA 59.354 44.000 0.00 0.00 0.00 2.57
31 32 5.627499 AGAGAGAGATAGATCGCATGAAC 57.373 43.478 0.00 0.00 0.00 3.18
32 33 4.458989 AGAGAGAGATAGATCGCATGAACC 59.541 45.833 0.00 0.00 0.00 3.62
33 34 3.190327 AGAGAGATAGATCGCATGAACCG 59.810 47.826 0.00 0.00 0.00 4.44
34 35 2.230025 AGAGATAGATCGCATGAACCGG 59.770 50.000 0.00 0.00 0.00 5.28
35 36 1.071605 GATAGATCGCATGAACCGGC 58.928 55.000 0.00 0.00 0.00 6.13
36 37 0.392706 ATAGATCGCATGAACCGGCA 59.607 50.000 0.00 0.00 0.00 5.69
37 38 0.392706 TAGATCGCATGAACCGGCAT 59.607 50.000 0.00 0.00 0.00 4.40
38 39 0.392706 AGATCGCATGAACCGGCATA 59.607 50.000 0.00 0.00 0.00 3.14
39 40 1.002430 AGATCGCATGAACCGGCATAT 59.998 47.619 0.00 0.00 0.00 1.78
40 41 1.806542 GATCGCATGAACCGGCATATT 59.193 47.619 0.00 0.00 0.00 1.28
41 42 1.225855 TCGCATGAACCGGCATATTC 58.774 50.000 0.00 0.00 0.00 1.75
42 43 0.238289 CGCATGAACCGGCATATTCC 59.762 55.000 0.00 0.00 0.00 3.01
43 44 1.317613 GCATGAACCGGCATATTCCA 58.682 50.000 0.00 0.00 0.00 3.53
44 45 1.001378 GCATGAACCGGCATATTCCAC 60.001 52.381 0.00 0.00 0.00 4.02
45 46 2.575532 CATGAACCGGCATATTCCACT 58.424 47.619 0.00 0.00 0.00 4.00
46 47 2.799126 TGAACCGGCATATTCCACTT 57.201 45.000 0.00 0.00 0.00 3.16
47 48 3.916359 TGAACCGGCATATTCCACTTA 57.084 42.857 0.00 0.00 0.00 2.24
48 49 4.431416 TGAACCGGCATATTCCACTTAT 57.569 40.909 0.00 0.00 0.00 1.73
49 50 4.385825 TGAACCGGCATATTCCACTTATC 58.614 43.478 0.00 0.00 0.00 1.75
50 51 3.040147 ACCGGCATATTCCACTTATCG 57.960 47.619 0.00 0.00 0.00 2.92
51 52 2.631062 ACCGGCATATTCCACTTATCGA 59.369 45.455 0.00 0.00 0.00 3.59
52 53 3.260884 ACCGGCATATTCCACTTATCGAT 59.739 43.478 0.00 2.16 0.00 3.59
53 54 3.618594 CCGGCATATTCCACTTATCGATG 59.381 47.826 8.54 0.00 0.00 3.84
54 55 3.618594 CGGCATATTCCACTTATCGATGG 59.381 47.826 8.54 1.66 37.32 3.51
55 56 3.375299 GGCATATTCCACTTATCGATGGC 59.625 47.826 8.54 0.00 35.81 4.40
56 57 4.002982 GCATATTCCACTTATCGATGGCA 58.997 43.478 8.54 0.00 35.81 4.92
57 58 4.093998 GCATATTCCACTTATCGATGGCAG 59.906 45.833 8.54 3.89 35.81 4.85
58 59 2.620251 TTCCACTTATCGATGGCAGG 57.380 50.000 8.54 5.35 35.81 4.85
59 60 1.496060 TCCACTTATCGATGGCAGGT 58.504 50.000 8.54 0.00 35.81 4.00
60 61 1.837439 TCCACTTATCGATGGCAGGTT 59.163 47.619 8.54 0.00 35.81 3.50
61 62 2.158957 TCCACTTATCGATGGCAGGTTC 60.159 50.000 8.54 0.00 35.81 3.62
62 63 2.158900 CCACTTATCGATGGCAGGTTCT 60.159 50.000 8.54 0.00 0.00 3.01
63 64 2.868583 CACTTATCGATGGCAGGTTCTG 59.131 50.000 8.54 0.00 34.12 3.02
64 65 2.501723 ACTTATCGATGGCAGGTTCTGT 59.498 45.455 8.54 0.00 33.43 3.41
65 66 3.704566 ACTTATCGATGGCAGGTTCTGTA 59.295 43.478 8.54 0.00 33.43 2.74
66 67 4.161565 ACTTATCGATGGCAGGTTCTGTAA 59.838 41.667 8.54 0.00 33.43 2.41
67 68 3.845781 ATCGATGGCAGGTTCTGTAAT 57.154 42.857 0.00 0.00 33.43 1.89
68 69 3.627395 TCGATGGCAGGTTCTGTAATT 57.373 42.857 0.00 0.00 33.43 1.40
69 70 3.950397 TCGATGGCAGGTTCTGTAATTT 58.050 40.909 0.00 0.00 33.43 1.82
70 71 3.938963 TCGATGGCAGGTTCTGTAATTTC 59.061 43.478 0.00 0.00 33.43 2.17
71 72 3.065371 CGATGGCAGGTTCTGTAATTTCC 59.935 47.826 0.00 0.00 33.43 3.13
72 73 3.517296 TGGCAGGTTCTGTAATTTCCA 57.483 42.857 0.00 0.00 33.43 3.53
73 74 3.153919 TGGCAGGTTCTGTAATTTCCAC 58.846 45.455 0.00 0.00 33.43 4.02
74 75 3.153919 GGCAGGTTCTGTAATTTCCACA 58.846 45.455 0.00 0.00 33.43 4.17
75 76 3.572255 GGCAGGTTCTGTAATTTCCACAA 59.428 43.478 0.00 0.00 33.43 3.33
76 77 4.038642 GGCAGGTTCTGTAATTTCCACAAA 59.961 41.667 0.00 0.00 33.43 2.83
77 78 4.982295 GCAGGTTCTGTAATTTCCACAAAC 59.018 41.667 0.00 0.00 33.43 2.93
78 79 5.221244 GCAGGTTCTGTAATTTCCACAAACT 60.221 40.000 0.00 0.00 33.43 2.66
79 80 6.438763 CAGGTTCTGTAATTTCCACAAACTC 58.561 40.000 0.00 0.00 0.00 3.01
80 81 5.535030 AGGTTCTGTAATTTCCACAAACTCC 59.465 40.000 0.00 0.00 0.00 3.85
81 82 5.300792 GGTTCTGTAATTTCCACAAACTCCA 59.699 40.000 0.00 0.00 0.00 3.86
82 83 6.015434 GGTTCTGTAATTTCCACAAACTCCAT 60.015 38.462 0.00 0.00 0.00 3.41
83 84 6.817765 TCTGTAATTTCCACAAACTCCATC 57.182 37.500 0.00 0.00 0.00 3.51
84 85 6.303054 TCTGTAATTTCCACAAACTCCATCA 58.697 36.000 0.00 0.00 0.00 3.07
85 86 6.947733 TCTGTAATTTCCACAAACTCCATCAT 59.052 34.615 0.00 0.00 0.00 2.45
86 87 7.451255 TCTGTAATTTCCACAAACTCCATCATT 59.549 33.333 0.00 0.00 0.00 2.57
87 88 7.961351 TGTAATTTCCACAAACTCCATCATTT 58.039 30.769 0.00 0.00 0.00 2.32
88 89 8.428063 TGTAATTTCCACAAACTCCATCATTTT 58.572 29.630 0.00 0.00 0.00 1.82
89 90 7.967890 AATTTCCACAAACTCCATCATTTTC 57.032 32.000 0.00 0.00 0.00 2.29
90 91 6.729690 TTTCCACAAACTCCATCATTTTCT 57.270 33.333 0.00 0.00 0.00 2.52
91 92 5.710513 TCCACAAACTCCATCATTTTCTG 57.289 39.130 0.00 0.00 0.00 3.02
92 93 4.523943 TCCACAAACTCCATCATTTTCTGG 59.476 41.667 0.00 0.00 0.00 3.86
93 94 4.523943 CCACAAACTCCATCATTTTCTGGA 59.476 41.667 0.00 0.00 39.23 3.86
94 95 5.186409 CCACAAACTCCATCATTTTCTGGAT 59.814 40.000 0.00 0.00 40.66 3.41
95 96 6.327934 CACAAACTCCATCATTTTCTGGATC 58.672 40.000 0.00 0.00 40.66 3.36
96 97 6.152323 CACAAACTCCATCATTTTCTGGATCT 59.848 38.462 0.00 0.00 40.66 2.75
97 98 6.152323 ACAAACTCCATCATTTTCTGGATCTG 59.848 38.462 0.00 0.00 40.66 2.90
98 99 4.205587 ACTCCATCATTTTCTGGATCTGC 58.794 43.478 0.00 0.00 40.66 4.26
99 100 4.204799 CTCCATCATTTTCTGGATCTGCA 58.795 43.478 0.00 0.00 40.66 4.41
100 101 3.949754 TCCATCATTTTCTGGATCTGCAC 59.050 43.478 0.00 0.00 36.63 4.57
101 102 3.242969 CCATCATTTTCTGGATCTGCACG 60.243 47.826 0.00 0.00 34.24 5.34
102 103 3.057969 TCATTTTCTGGATCTGCACGT 57.942 42.857 0.00 0.00 0.00 4.49
103 104 3.411446 TCATTTTCTGGATCTGCACGTT 58.589 40.909 0.00 0.00 0.00 3.99
104 105 3.189080 TCATTTTCTGGATCTGCACGTTG 59.811 43.478 0.00 0.00 0.00 4.10
105 106 1.522668 TTTCTGGATCTGCACGTTGG 58.477 50.000 0.00 0.00 0.00 3.77
106 107 0.396435 TTCTGGATCTGCACGTTGGT 59.604 50.000 0.00 0.00 0.00 3.67
107 108 1.262417 TCTGGATCTGCACGTTGGTA 58.738 50.000 0.00 0.00 0.00 3.25
108 109 1.831106 TCTGGATCTGCACGTTGGTAT 59.169 47.619 0.00 0.00 0.00 2.73
109 110 2.236146 TCTGGATCTGCACGTTGGTATT 59.764 45.455 0.00 0.00 0.00 1.89
110 111 3.009723 CTGGATCTGCACGTTGGTATTT 58.990 45.455 0.00 0.00 0.00 1.40
111 112 2.746904 TGGATCTGCACGTTGGTATTTG 59.253 45.455 0.00 0.00 0.00 2.32
112 113 2.097466 GGATCTGCACGTTGGTATTTGG 59.903 50.000 0.00 0.00 0.00 3.28
113 114 2.264005 TCTGCACGTTGGTATTTGGT 57.736 45.000 0.00 0.00 0.00 3.67
114 115 3.404224 TCTGCACGTTGGTATTTGGTA 57.596 42.857 0.00 0.00 0.00 3.25
115 116 3.741249 TCTGCACGTTGGTATTTGGTAA 58.259 40.909 0.00 0.00 0.00 2.85
116 117 3.749088 TCTGCACGTTGGTATTTGGTAAG 59.251 43.478 0.00 0.00 0.00 2.34
117 118 3.741249 TGCACGTTGGTATTTGGTAAGA 58.259 40.909 0.00 0.00 0.00 2.10
118 119 4.328536 TGCACGTTGGTATTTGGTAAGAT 58.671 39.130 0.00 0.00 0.00 2.40
119 120 5.489249 TGCACGTTGGTATTTGGTAAGATA 58.511 37.500 0.00 0.00 0.00 1.98
120 121 6.116806 TGCACGTTGGTATTTGGTAAGATAT 58.883 36.000 0.00 0.00 0.00 1.63
121 122 6.259167 TGCACGTTGGTATTTGGTAAGATATC 59.741 38.462 0.00 0.00 0.00 1.63
122 123 6.259167 GCACGTTGGTATTTGGTAAGATATCA 59.741 38.462 5.32 0.00 0.00 2.15
123 124 7.201661 GCACGTTGGTATTTGGTAAGATATCAA 60.202 37.037 5.32 0.00 0.00 2.57
124 125 8.836413 CACGTTGGTATTTGGTAAGATATCAAT 58.164 33.333 5.32 0.00 33.02 2.57
125 126 9.403583 ACGTTGGTATTTGGTAAGATATCAATT 57.596 29.630 5.32 0.00 33.02 2.32
137 138 9.931210 GGTAAGATATCAATTACTTTTTCACGG 57.069 33.333 5.32 0.00 33.36 4.94
138 139 9.931210 GTAAGATATCAATTACTTTTTCACGGG 57.069 33.333 5.32 0.00 0.00 5.28
139 140 8.801882 AAGATATCAATTACTTTTTCACGGGA 57.198 30.769 5.32 0.00 0.00 5.14
140 141 8.801882 AGATATCAATTACTTTTTCACGGGAA 57.198 30.769 5.32 0.00 0.00 3.97
141 142 9.408648 AGATATCAATTACTTTTTCACGGGAAT 57.591 29.630 0.00 0.00 31.93 3.01
142 143 9.450807 GATATCAATTACTTTTTCACGGGAATG 57.549 33.333 0.00 0.00 31.93 2.67
143 144 6.019779 TCAATTACTTTTTCACGGGAATGG 57.980 37.500 0.00 0.00 31.93 3.16
144 145 5.536916 TCAATTACTTTTTCACGGGAATGGT 59.463 36.000 0.00 3.30 31.93 3.55
145 146 6.715718 TCAATTACTTTTTCACGGGAATGGTA 59.284 34.615 0.00 2.28 31.93 3.25
146 147 6.753107 ATTACTTTTTCACGGGAATGGTAG 57.247 37.500 0.00 0.00 31.93 3.18
147 148 3.418047 ACTTTTTCACGGGAATGGTAGG 58.582 45.455 0.00 0.00 31.93 3.18
148 149 3.073356 ACTTTTTCACGGGAATGGTAGGA 59.927 43.478 0.00 0.00 31.93 2.94
149 150 4.263771 ACTTTTTCACGGGAATGGTAGGAT 60.264 41.667 0.00 0.00 31.93 3.24
150 151 5.045432 ACTTTTTCACGGGAATGGTAGGATA 60.045 40.000 0.00 0.00 31.93 2.59
151 152 5.640158 TTTTCACGGGAATGGTAGGATAT 57.360 39.130 0.00 0.00 31.93 1.63
152 153 5.640158 TTTCACGGGAATGGTAGGATATT 57.360 39.130 0.00 0.00 31.93 1.28
153 154 6.750660 TTTCACGGGAATGGTAGGATATTA 57.249 37.500 0.00 0.00 31.93 0.98
154 155 6.750660 TTCACGGGAATGGTAGGATATTAA 57.249 37.500 0.00 0.00 0.00 1.40
155 156 6.945636 TCACGGGAATGGTAGGATATTAAT 57.054 37.500 0.00 0.00 0.00 1.40
156 157 7.324388 TCACGGGAATGGTAGGATATTAATT 57.676 36.000 0.00 0.00 0.00 1.40
157 158 8.438618 TCACGGGAATGGTAGGATATTAATTA 57.561 34.615 0.00 0.00 0.00 1.40
158 159 8.316214 TCACGGGAATGGTAGGATATTAATTAC 58.684 37.037 0.00 0.00 0.00 1.89
159 160 8.098286 CACGGGAATGGTAGGATATTAATTACA 58.902 37.037 0.00 0.00 0.00 2.41
160 161 8.832735 ACGGGAATGGTAGGATATTAATTACAT 58.167 33.333 0.00 0.00 0.00 2.29
161 162 9.109393 CGGGAATGGTAGGATATTAATTACATG 57.891 37.037 0.00 0.00 0.00 3.21
176 177 9.699410 ATTAATTACATGACAGATTTCAAGGGA 57.301 29.630 0.00 0.00 0.00 4.20
177 178 9.699410 TTAATTACATGACAGATTTCAAGGGAT 57.301 29.630 0.00 0.00 0.00 3.85
179 180 8.915057 ATTACATGACAGATTTCAAGGGATAG 57.085 34.615 0.00 0.00 0.00 2.08
180 181 5.128919 ACATGACAGATTTCAAGGGATAGC 58.871 41.667 0.00 0.00 0.00 2.97
181 182 3.797039 TGACAGATTTCAAGGGATAGCG 58.203 45.455 0.00 0.00 0.00 4.26
182 183 3.197766 TGACAGATTTCAAGGGATAGCGT 59.802 43.478 0.00 0.00 0.00 5.07
183 184 4.192317 GACAGATTTCAAGGGATAGCGTT 58.808 43.478 0.00 0.00 0.00 4.84
184 185 3.941483 ACAGATTTCAAGGGATAGCGTTG 59.059 43.478 0.00 0.00 0.00 4.10
185 186 4.191544 CAGATTTCAAGGGATAGCGTTGA 58.808 43.478 0.00 0.00 0.00 3.18
186 187 4.272018 CAGATTTCAAGGGATAGCGTTGAG 59.728 45.833 0.00 0.00 32.00 3.02
187 188 3.695830 TTTCAAGGGATAGCGTTGAGT 57.304 42.857 0.00 0.00 32.00 3.41
188 189 2.961526 TCAAGGGATAGCGTTGAGTC 57.038 50.000 0.00 0.00 0.00 3.36
189 190 2.176045 TCAAGGGATAGCGTTGAGTCA 58.824 47.619 0.00 0.00 0.00 3.41
190 191 2.565391 TCAAGGGATAGCGTTGAGTCAA 59.435 45.455 0.08 0.08 0.00 3.18
191 192 3.007506 TCAAGGGATAGCGTTGAGTCAAA 59.992 43.478 7.25 0.00 0.00 2.69
192 193 3.695830 AGGGATAGCGTTGAGTCAAAA 57.304 42.857 7.25 0.00 0.00 2.44
193 194 3.335579 AGGGATAGCGTTGAGTCAAAAC 58.664 45.455 7.25 2.62 0.00 2.43
194 195 3.071479 GGGATAGCGTTGAGTCAAAACA 58.929 45.455 7.25 0.00 0.00 2.83
195 196 3.689649 GGGATAGCGTTGAGTCAAAACAT 59.310 43.478 7.25 0.00 0.00 2.71
196 197 4.437390 GGGATAGCGTTGAGTCAAAACATG 60.437 45.833 7.25 0.00 0.00 3.21
197 198 4.154195 GGATAGCGTTGAGTCAAAACATGT 59.846 41.667 7.25 0.00 0.00 3.21
198 199 5.334879 GGATAGCGTTGAGTCAAAACATGTT 60.335 40.000 7.25 4.92 0.00 2.71
199 200 4.370364 AGCGTTGAGTCAAAACATGTTT 57.630 36.364 18.13 18.13 0.00 2.83
200 201 5.493133 AGCGTTGAGTCAAAACATGTTTA 57.507 34.783 23.53 6.97 31.63 2.01
201 202 6.072112 AGCGTTGAGTCAAAACATGTTTAT 57.928 33.333 23.53 11.41 31.63 1.40
202 203 7.197071 AGCGTTGAGTCAAAACATGTTTATA 57.803 32.000 23.53 12.17 31.63 0.98
203 204 7.644490 AGCGTTGAGTCAAAACATGTTTATAA 58.356 30.769 23.53 9.76 31.63 0.98
204 205 7.589954 AGCGTTGAGTCAAAACATGTTTATAAC 59.410 33.333 23.53 19.49 31.63 1.89
205 206 7.149031 GCGTTGAGTCAAAACATGTTTATAACC 60.149 37.037 23.53 13.37 31.63 2.85
206 207 7.858382 CGTTGAGTCAAAACATGTTTATAACCA 59.142 33.333 23.53 15.50 31.63 3.67
207 208 9.522804 GTTGAGTCAAAACATGTTTATAACCAA 57.477 29.630 23.53 19.53 31.63 3.67
209 210 9.689976 TGAGTCAAAACATGTTTATAACCAATG 57.310 29.630 23.53 15.06 31.63 2.82
210 211 9.139174 GAGTCAAAACATGTTTATAACCAATGG 57.861 33.333 23.53 0.00 31.63 3.16
211 212 7.602265 AGTCAAAACATGTTTATAACCAATGGC 59.398 33.333 23.53 16.19 31.63 4.40
212 213 7.386299 GTCAAAACATGTTTATAACCAATGGCA 59.614 33.333 23.53 0.00 31.63 4.92
213 214 7.933577 TCAAAACATGTTTATAACCAATGGCAA 59.066 29.630 23.53 0.00 31.63 4.52
214 215 8.728833 CAAAACATGTTTATAACCAATGGCAAT 58.271 29.630 23.53 0.00 31.63 3.56
215 216 7.846644 AACATGTTTATAACCAATGGCAATG 57.153 32.000 4.92 0.00 0.00 2.82
216 217 6.347696 ACATGTTTATAACCAATGGCAATGG 58.652 36.000 19.96 19.96 43.84 3.16
223 224 2.855209 CCAATGGCAATGGTGGAAAA 57.145 45.000 13.62 0.00 32.54 2.29
224 225 3.353370 CCAATGGCAATGGTGGAAAAT 57.647 42.857 13.62 0.00 32.54 1.82
225 226 3.688235 CCAATGGCAATGGTGGAAAATT 58.312 40.909 13.62 0.00 32.54 1.82
226 227 4.841422 CCAATGGCAATGGTGGAAAATTA 58.159 39.130 13.62 0.00 32.54 1.40
227 228 5.251764 CCAATGGCAATGGTGGAAAATTAA 58.748 37.500 13.62 0.00 32.54 1.40
228 229 5.709164 CCAATGGCAATGGTGGAAAATTAAA 59.291 36.000 13.62 0.00 32.54 1.52
229 230 6.127952 CCAATGGCAATGGTGGAAAATTAAAG 60.128 38.462 13.62 0.00 32.54 1.85
230 231 4.322567 TGGCAATGGTGGAAAATTAAAGC 58.677 39.130 0.00 0.00 0.00 3.51
231 232 3.370672 GGCAATGGTGGAAAATTAAAGCG 59.629 43.478 0.00 0.00 0.00 4.68
232 233 3.993736 GCAATGGTGGAAAATTAAAGCGT 59.006 39.130 0.00 0.00 0.00 5.07
233 234 4.450757 GCAATGGTGGAAAATTAAAGCGTT 59.549 37.500 0.00 0.00 0.00 4.84
234 235 5.635700 GCAATGGTGGAAAATTAAAGCGTTA 59.364 36.000 0.00 0.00 0.00 3.18
235 236 6.146347 GCAATGGTGGAAAATTAAAGCGTTAA 59.854 34.615 7.30 7.30 33.76 2.01
236 237 7.307455 GCAATGGTGGAAAATTAAAGCGTTAAA 60.307 33.333 8.90 0.00 32.98 1.52
237 238 7.646446 ATGGTGGAAAATTAAAGCGTTAAAC 57.354 32.000 8.90 2.02 32.98 2.01
238 239 5.686397 TGGTGGAAAATTAAAGCGTTAAACG 59.314 36.000 8.90 0.00 45.88 3.60
239 240 5.686841 GGTGGAAAATTAAAGCGTTAAACGT 59.313 36.000 8.90 0.00 44.73 3.99
240 241 6.345172 GGTGGAAAATTAAAGCGTTAAACGTG 60.345 38.462 8.90 0.00 44.73 4.49
241 242 6.196910 GTGGAAAATTAAAGCGTTAAACGTGT 59.803 34.615 8.90 0.00 44.73 4.49
242 243 6.750963 TGGAAAATTAAAGCGTTAAACGTGTT 59.249 30.769 8.90 0.00 44.73 3.32
243 244 7.275123 TGGAAAATTAAAGCGTTAAACGTGTTT 59.725 29.630 8.90 3.21 44.73 2.83
244 245 7.576248 GGAAAATTAAAGCGTTAAACGTGTTTG 59.424 33.333 8.90 0.00 44.73 2.93
245 246 6.499356 AATTAAAGCGTTAAACGTGTTTGG 57.501 33.333 8.90 0.00 44.73 3.28
246 247 3.490800 AAAGCGTTAAACGTGTTTGGT 57.509 38.095 8.19 0.00 44.73 3.67
247 248 2.461897 AGCGTTAAACGTGTTTGGTG 57.538 45.000 8.19 0.00 44.73 4.17
248 249 0.841356 GCGTTAAACGTGTTTGGTGC 59.159 50.000 8.19 5.33 44.73 5.01
249 250 1.532298 GCGTTAAACGTGTTTGGTGCT 60.532 47.619 8.19 0.00 44.73 4.40
250 251 2.368685 CGTTAAACGTGTTTGGTGCTC 58.631 47.619 8.19 0.00 36.74 4.26
251 252 2.223066 CGTTAAACGTGTTTGGTGCTCA 60.223 45.455 8.19 0.00 36.74 4.26
252 253 3.728268 CGTTAAACGTGTTTGGTGCTCAA 60.728 43.478 8.19 0.00 36.74 3.02
253 254 2.271821 AAACGTGTTTGGTGCTCAAC 57.728 45.000 0.00 0.00 34.67 3.18
254 255 1.169577 AACGTGTTTGGTGCTCAACA 58.830 45.000 0.00 0.00 34.67 3.33
255 256 1.388547 ACGTGTTTGGTGCTCAACAT 58.611 45.000 0.00 0.00 34.67 2.71
256 257 1.748493 ACGTGTTTGGTGCTCAACATT 59.252 42.857 0.00 0.00 34.67 2.71
257 258 2.946329 ACGTGTTTGGTGCTCAACATTA 59.054 40.909 0.00 0.00 34.67 1.90
258 259 3.003275 ACGTGTTTGGTGCTCAACATTAG 59.997 43.478 0.00 0.00 34.67 1.73
259 260 3.249799 CGTGTTTGGTGCTCAACATTAGA 59.750 43.478 0.00 0.00 34.67 2.10
260 261 4.611355 CGTGTTTGGTGCTCAACATTAGAG 60.611 45.833 0.00 0.00 34.67 2.43
272 273 7.072177 CTCAACATTAGAGCGATTTAAACCA 57.928 36.000 0.00 0.00 0.00 3.67
273 274 6.837992 TCAACATTAGAGCGATTTAAACCAC 58.162 36.000 0.00 0.00 0.00 4.16
274 275 6.653320 TCAACATTAGAGCGATTTAAACCACT 59.347 34.615 0.00 0.00 0.00 4.00
275 276 7.820386 TCAACATTAGAGCGATTTAAACCACTA 59.180 33.333 0.00 0.00 0.00 2.74
276 277 7.772332 ACATTAGAGCGATTTAAACCACTAG 57.228 36.000 0.00 0.00 0.00 2.57
277 278 7.553334 ACATTAGAGCGATTTAAACCACTAGA 58.447 34.615 0.00 0.00 0.00 2.43
278 279 8.204836 ACATTAGAGCGATTTAAACCACTAGAT 58.795 33.333 0.00 0.00 0.00 1.98
279 280 9.692749 CATTAGAGCGATTTAAACCACTAGATA 57.307 33.333 0.00 0.00 0.00 1.98
295 296 9.924650 ACCACTAGATAATATGATTTAACGGTC 57.075 33.333 0.00 0.00 0.00 4.79
296 297 9.923143 CCACTAGATAATATGATTTAACGGTCA 57.077 33.333 0.00 0.00 0.00 4.02
307 308 6.851609 TGATTTAACGGTCAAGATGATTTGG 58.148 36.000 0.00 0.00 0.00 3.28
308 309 6.657117 TGATTTAACGGTCAAGATGATTTGGA 59.343 34.615 0.00 0.00 0.00 3.53
309 310 7.339212 TGATTTAACGGTCAAGATGATTTGGAT 59.661 33.333 0.00 0.00 0.00 3.41
310 311 6.677781 TTAACGGTCAAGATGATTTGGATC 57.322 37.500 0.00 0.00 0.00 3.36
311 312 4.494091 ACGGTCAAGATGATTTGGATCT 57.506 40.909 0.00 0.00 33.28 2.75
312 313 4.194640 ACGGTCAAGATGATTTGGATCTG 58.805 43.478 0.00 0.00 33.28 2.90
313 314 3.003068 CGGTCAAGATGATTTGGATCTGC 59.997 47.826 0.00 0.00 33.28 4.26
314 315 4.205587 GGTCAAGATGATTTGGATCTGCT 58.794 43.478 0.00 0.00 33.28 4.24
315 316 4.275443 GGTCAAGATGATTTGGATCTGCTC 59.725 45.833 0.00 0.00 33.28 4.26
316 317 4.880120 GTCAAGATGATTTGGATCTGCTCA 59.120 41.667 0.00 0.00 33.28 4.26
317 318 5.531659 GTCAAGATGATTTGGATCTGCTCAT 59.468 40.000 0.00 0.00 33.28 2.90
318 319 6.039493 GTCAAGATGATTTGGATCTGCTCATT 59.961 38.462 0.00 0.00 33.28 2.57
319 320 6.605995 TCAAGATGATTTGGATCTGCTCATTT 59.394 34.615 0.00 0.00 33.28 2.32
320 321 6.392625 AGATGATTTGGATCTGCTCATTTG 57.607 37.500 0.00 0.00 33.28 2.32
321 322 6.127101 AGATGATTTGGATCTGCTCATTTGA 58.873 36.000 0.00 0.00 33.28 2.69
322 323 5.830000 TGATTTGGATCTGCTCATTTGAG 57.170 39.130 3.13 3.13 37.89 3.02
323 324 5.258841 TGATTTGGATCTGCTCATTTGAGT 58.741 37.500 9.21 0.00 37.54 3.41
324 325 5.356190 TGATTTGGATCTGCTCATTTGAGTC 59.644 40.000 9.21 2.95 37.54 3.36
325 326 4.564782 TTGGATCTGCTCATTTGAGTCT 57.435 40.909 9.21 0.00 43.85 3.24
326 327 4.564782 TGGATCTGCTCATTTGAGTCTT 57.435 40.909 9.21 0.00 43.85 3.01
327 328 4.914983 TGGATCTGCTCATTTGAGTCTTT 58.085 39.130 9.21 0.00 43.85 2.52
328 329 5.319453 TGGATCTGCTCATTTGAGTCTTTT 58.681 37.500 9.21 0.00 43.85 2.27
329 330 5.771666 TGGATCTGCTCATTTGAGTCTTTTT 59.228 36.000 9.21 0.00 43.85 1.94
330 331 6.942005 TGGATCTGCTCATTTGAGTCTTTTTA 59.058 34.615 9.21 0.00 43.85 1.52
331 332 7.613022 TGGATCTGCTCATTTGAGTCTTTTTAT 59.387 33.333 9.21 0.00 43.85 1.40
332 333 9.113838 GGATCTGCTCATTTGAGTCTTTTTATA 57.886 33.333 9.21 0.00 43.85 0.98
336 337 9.512435 CTGCTCATTTGAGTCTTTTTATATTGG 57.488 33.333 9.21 0.00 43.85 3.16
337 338 9.023962 TGCTCATTTGAGTCTTTTTATATTGGT 57.976 29.630 9.21 0.00 43.85 3.67
827 831 1.013596 CGAATGGCCGTGCTTCAATA 58.986 50.000 0.00 0.00 0.00 1.90
844 848 4.945246 TCAATACTCGACATCCTAAAGCC 58.055 43.478 0.00 0.00 0.00 4.35
845 849 4.649674 TCAATACTCGACATCCTAAAGCCT 59.350 41.667 0.00 0.00 0.00 4.58
862 895 7.939588 CCTAAAGCCTACTATAAGCCTGAAAAT 59.060 37.037 0.00 0.00 0.00 1.82
889 922 1.063114 ACTCCTAAGCCCAGGTACGAT 60.063 52.381 0.00 0.00 36.99 3.73
894 927 1.623542 AAGCCCAGGTACGATCCACC 61.624 60.000 3.39 3.39 36.22 4.61
1122 1156 1.002134 CAAGTTCCGCCCCATCACT 60.002 57.895 0.00 0.00 0.00 3.41
1153 1187 1.052124 CAAGGTACCGCATCCCCCTA 61.052 60.000 6.18 0.00 0.00 3.53
1283 1339 2.593956 GGGCGTGGAGGAGGTCTTT 61.594 63.158 0.00 0.00 0.00 2.52
1286 1342 0.951040 GCGTGGAGGAGGTCTTTGTG 60.951 60.000 0.00 0.00 0.00 3.33
1435 1491 2.203001 CCGCGTCATGTATGGCCA 60.203 61.111 8.56 8.56 0.00 5.36
1571 1635 5.851720 AGAACTGATAGTGAGCATATGTGG 58.148 41.667 4.29 0.00 0.00 4.17
1589 1653 2.040412 GTGGAACTGAAGTCTGGGGAAT 59.960 50.000 0.00 0.00 0.00 3.01
1704 1768 2.198827 TGGTACTGGTTGCCTCAATG 57.801 50.000 0.00 0.00 0.00 2.82
1751 1815 2.569059 CGGCAAGAGATTGTGATGGAT 58.431 47.619 0.00 0.00 0.00 3.41
1794 1859 5.312895 TGTTCAGAGCAAAACCTAGCATTA 58.687 37.500 0.00 0.00 0.00 1.90
1795 1860 5.945784 TGTTCAGAGCAAAACCTAGCATTAT 59.054 36.000 0.00 0.00 0.00 1.28
1990 2341 1.571460 CTGTCGCTTGTGCCTCAAC 59.429 57.895 0.00 0.00 35.36 3.18
2005 2356 5.231568 GTGCCTCAACTATCGTAACACATAC 59.768 44.000 0.00 0.00 0.00 2.39
2517 2874 9.752228 TTGCTATATTATTAAGGCCATGATTCA 57.248 29.630 5.01 0.00 0.00 2.57
2570 2940 3.856900 AGTAAATTCCCCCTTTTGCTGT 58.143 40.909 0.00 0.00 0.00 4.40
3031 3409 3.633774 GCGTAGTTGCGACTGAAAC 57.366 52.632 17.36 6.15 36.60 2.78
3233 3639 5.402398 GGCATGAACTTTTACCTGTCATTC 58.598 41.667 0.00 0.00 0.00 2.67
3234 3640 5.048083 GGCATGAACTTTTACCTGTCATTCA 60.048 40.000 0.00 0.00 0.00 2.57
3235 3641 6.088824 GCATGAACTTTTACCTGTCATTCAG 58.911 40.000 0.00 0.00 43.27 3.02
3271 3678 6.018994 GGTATGTCATCGTTGATTCCTGTAAC 60.019 42.308 0.00 0.00 33.56 2.50
3462 3872 9.010029 AGTATTGGTAAAAACGTTCTCATTCAT 57.990 29.630 0.00 0.00 0.00 2.57
3523 3935 5.061179 GGTGCAAAGTGAGTAACTCCTTAA 58.939 41.667 0.00 0.00 38.56 1.85
4108 4611 1.539496 GCGTTACTGTGGTTGTCAGGA 60.539 52.381 0.00 0.00 37.25 3.86
4109 4612 2.870435 GCGTTACTGTGGTTGTCAGGAT 60.870 50.000 0.00 0.00 37.25 3.24
4110 4613 3.399330 CGTTACTGTGGTTGTCAGGATT 58.601 45.455 0.00 0.00 37.25 3.01
4644 5152 9.983804 GAATGCCTACTAAATGTAAACAACTAC 57.016 33.333 0.00 0.00 0.00 2.73
4664 5172 6.783162 ACTACGACACATATAAGTCAGTCAC 58.217 40.000 0.00 0.00 34.48 3.67
4843 5351 9.684702 ATACTCCCCCTGTAAAGAAATATAAGA 57.315 33.333 0.00 0.00 0.00 2.10
4844 5352 8.035448 ACTCCCCCTGTAAAGAAATATAAGAG 57.965 38.462 0.00 0.00 0.00 2.85
4845 5353 6.838382 TCCCCCTGTAAAGAAATATAAGAGC 58.162 40.000 0.00 0.00 0.00 4.09
4846 5354 5.701290 CCCCCTGTAAAGAAATATAAGAGCG 59.299 44.000 0.00 0.00 0.00 5.03
4847 5355 6.289064 CCCCTGTAAAGAAATATAAGAGCGT 58.711 40.000 0.00 0.00 0.00 5.07
4848 5356 6.766467 CCCCTGTAAAGAAATATAAGAGCGTT 59.234 38.462 0.00 0.00 0.00 4.84
4849 5357 7.282450 CCCCTGTAAAGAAATATAAGAGCGTTT 59.718 37.037 0.00 0.00 0.00 3.60
4850 5358 9.321562 CCCTGTAAAGAAATATAAGAGCGTTTA 57.678 33.333 0.00 0.00 0.00 2.01
4864 5372 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
4865 5373 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
4897 5405 8.608844 AACACTCTTATGTTTCTTTACAGAGG 57.391 34.615 0.00 0.00 39.86 3.69
4898 5406 7.162082 ACACTCTTATGTTTCTTTACAGAGGG 58.838 38.462 0.00 0.00 31.28 4.30
4899 5407 7.016268 ACACTCTTATGTTTCTTTACAGAGGGA 59.984 37.037 2.59 0.00 30.22 4.20
4900 5408 7.547370 CACTCTTATGTTTCTTTACAGAGGGAG 59.453 40.741 0.00 0.00 32.48 4.30
4901 5409 7.235812 ACTCTTATGTTTCTTTACAGAGGGAGT 59.764 37.037 0.00 0.00 33.57 3.85
4902 5410 8.660295 TCTTATGTTTCTTTACAGAGGGAGTA 57.340 34.615 0.00 0.00 0.00 2.59
4903 5411 8.529476 TCTTATGTTTCTTTACAGAGGGAGTAC 58.471 37.037 0.00 0.00 0.00 2.73
5017 5527 3.025262 TGCAGAAATATTGCAGCCATGA 58.975 40.909 8.25 0.00 45.89 3.07
5092 5612 7.472334 AGCATCTGAATTTGGATTAACACTT 57.528 32.000 0.00 0.00 0.00 3.16
5136 5663 9.817809 CTTTGCTTGTATAGAGTATGGAAGTTA 57.182 33.333 0.00 0.00 0.00 2.24
5165 5692 5.178067 CGGTGTCTTGTTCTAATTTTACGGT 59.822 40.000 0.00 0.00 0.00 4.83
5409 6000 2.715749 TCATGAGGGGTGCATTAGTG 57.284 50.000 0.00 0.00 0.00 2.74
5451 6042 5.369404 TGGTATGATTTCTAGGGATGCTTCA 59.631 40.000 1.64 0.00 0.00 3.02
5630 6269 5.964958 TTTCCTCTATTGCAAAGTCCAAG 57.035 39.130 1.71 0.00 0.00 3.61
5961 6646 8.994429 ATTGATTTAAAAATGGTATTGCGTCA 57.006 26.923 0.00 0.00 0.00 4.35
6034 6719 3.817647 CAGCATAGGTTCCTTTATCAGCC 59.182 47.826 0.00 0.00 0.00 4.85
6223 7231 0.102120 ATTGTTGTGTTGGTGCACGG 59.898 50.000 11.45 0.00 41.94 4.94
6236 7244 1.739562 GCACGGCAGACTCTTGGAG 60.740 63.158 0.00 0.00 35.52 3.86
6245 7253 1.614824 ACTCTTGGAGGGGCCTCTG 60.615 63.158 11.93 0.00 42.38 3.35
6246 7254 1.306482 CTCTTGGAGGGGCCTCTGA 60.306 63.158 11.93 0.00 42.38 3.27
6265 7273 6.207417 CCTCTGATGTGGTTGTCAAGTTTTAT 59.793 38.462 0.00 0.00 0.00 1.40
6268 7276 7.068103 TCTGATGTGGTTGTCAAGTTTTATGTT 59.932 33.333 0.00 0.00 0.00 2.71
6350 7420 5.261209 TGTATTTGACATGGGCTAAATGC 57.739 39.130 0.00 3.05 35.19 3.56
6358 7428 6.887013 TGACATGGGCTAAATGCATTATTTT 58.113 32.000 13.39 0.00 45.15 1.82
6459 7529 9.628500 ACTGTTCTCAAAGGTAAAGAACTATTT 57.372 29.630 13.70 0.00 45.79 1.40
6492 7562 4.839121 ACAGATAAGTTCCGTGCCATTTA 58.161 39.130 0.00 0.00 0.00 1.40
6539 7612 0.901124 TTTGTTTGCACTGCTGGGTT 59.099 45.000 1.98 0.00 0.00 4.11
6542 7616 0.249031 GTTTGCACTGCTGGGTTGAC 60.249 55.000 1.98 0.00 0.00 3.18
6546 7620 1.291877 GCACTGCTGGGTTGACGTAG 61.292 60.000 0.00 0.00 0.00 3.51
6568 7644 7.490725 CGTAGACTGTTTGAGAATTGATGATCT 59.509 37.037 0.00 0.00 0.00 2.75
6693 7769 2.457366 AAGAAAATGCCGACGAGTCT 57.543 45.000 0.00 0.00 0.00 3.24
6771 7847 5.505181 AAGCTGAGTTCTCCTTTTCCATA 57.495 39.130 0.00 0.00 0.00 2.74
6801 7877 3.954258 AGATTTACCTGGCCTGTTTATGC 59.046 43.478 3.32 0.00 0.00 3.14
6841 7923 6.550854 AGTTTTTCATGATCTCAAACCTTCCA 59.449 34.615 0.00 0.00 0.00 3.53
6865 7947 2.091541 GAGGGAATGATTCAAACCGCA 58.908 47.619 7.56 0.00 0.00 5.69
6977 8062 6.148976 AGTCTCAAACATGATGATGTCTTGTG 59.851 38.462 0.00 6.99 42.30 3.33
7000 8085 6.431234 GTGAAAACTAAATCCCACTGAGATGT 59.569 38.462 0.00 0.00 0.00 3.06
7002 8087 7.174946 TGAAAACTAAATCCCACTGAGATGTTC 59.825 37.037 0.00 0.00 0.00 3.18
7031 8116 5.348997 GTCTTGAGCATACTAACTTGTCACC 59.651 44.000 0.00 0.00 0.00 4.02
7261 8353 3.652869 AGAGGTGGGAGAGAAACATTTGA 59.347 43.478 0.00 0.00 0.00 2.69
7262 8354 4.290722 AGAGGTGGGAGAGAAACATTTGAT 59.709 41.667 0.00 0.00 0.00 2.57
7351 8446 0.882484 TCCGTTCGTGCATGCTTTGA 60.882 50.000 20.33 10.96 0.00 2.69
7381 8476 2.559668 TGCTTCCATGAAAGAAAGCCTG 59.440 45.455 0.00 0.00 0.00 4.85
7395 8490 4.644685 AGAAAGCCTGCTTGTTTTACTTGA 59.355 37.500 4.95 0.00 36.26 3.02
7506 8611 6.180472 TGGATTCTTCTTTTATCTTTCCGCT 58.820 36.000 0.00 0.00 0.00 5.52
7508 8613 6.316390 GGATTCTTCTTTTATCTTTCCGCTGA 59.684 38.462 0.00 0.00 0.00 4.26
7531 8636 3.117963 GGAGATGGATGGATGGATGGATC 60.118 52.174 0.00 0.00 0.00 3.36
7533 8638 2.028561 TGGATGGATGGATGGATCGA 57.971 50.000 0.00 0.00 0.00 3.59
7534 8639 2.554563 TGGATGGATGGATGGATCGAT 58.445 47.619 0.00 0.00 0.00 3.59
7535 8640 2.914941 TGGATGGATGGATGGATCGATT 59.085 45.455 0.00 0.00 0.00 3.34
7609 8723 3.137687 CAAAAGGCGGCAAAGGGT 58.862 55.556 13.08 0.00 0.00 4.34
7618 8732 0.893270 CGGCAAAGGGTTCATGTGGA 60.893 55.000 0.00 0.00 0.00 4.02
7719 8834 0.763223 TCGGATCCCCTAAAGGCTCC 60.763 60.000 6.06 0.00 34.19 4.70
7738 8853 1.024579 CCGGCCTATCGTGCTTTGTT 61.025 55.000 0.00 0.00 0.00 2.83
7771 8886 1.964373 GGGCCGAAGCAAAACGAGA 60.964 57.895 0.00 0.00 42.56 4.04
7859 8981 0.368227 CGCTAAGCAAACTCTCTGCG 59.632 55.000 0.00 0.00 44.75 5.18
7977 9107 9.866655 ATTTCAATATGGACTAGGAGCAAAATA 57.133 29.630 0.00 0.00 0.00 1.40
7985 9115 6.823689 TGGACTAGGAGCAAAATAAGTGAATC 59.176 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.863424 CGATCTATCTCTCTCTACCGCTC 59.137 52.174 0.00 0.00 0.00 5.03
4 5 2.350498 GCGATCTATCTCTCTCTACCGC 59.650 54.545 0.00 0.00 0.00 5.68
6 7 5.182487 TCATGCGATCTATCTCTCTCTACC 58.818 45.833 0.00 0.00 0.00 3.18
7 8 6.403200 GGTTCATGCGATCTATCTCTCTCTAC 60.403 46.154 0.00 0.00 0.00 2.59
8 9 5.645929 GGTTCATGCGATCTATCTCTCTCTA 59.354 44.000 0.00 0.00 0.00 2.43
9 10 4.458989 GGTTCATGCGATCTATCTCTCTCT 59.541 45.833 0.00 0.00 0.00 3.10
10 11 4.671508 CGGTTCATGCGATCTATCTCTCTC 60.672 50.000 0.00 0.00 0.00 3.20
11 12 3.190327 CGGTTCATGCGATCTATCTCTCT 59.810 47.826 0.00 0.00 0.00 3.10
12 13 3.497118 CGGTTCATGCGATCTATCTCTC 58.503 50.000 0.00 0.00 0.00 3.20
13 14 2.230025 CCGGTTCATGCGATCTATCTCT 59.770 50.000 0.00 0.00 0.00 3.10
14 15 2.600731 CCGGTTCATGCGATCTATCTC 58.399 52.381 0.00 0.00 0.00 2.75
15 16 1.337260 GCCGGTTCATGCGATCTATCT 60.337 52.381 1.90 0.00 0.00 1.98
16 17 1.071605 GCCGGTTCATGCGATCTATC 58.928 55.000 1.90 0.00 0.00 2.08
17 18 0.392706 TGCCGGTTCATGCGATCTAT 59.607 50.000 1.90 0.00 0.00 1.98
18 19 0.392706 ATGCCGGTTCATGCGATCTA 59.607 50.000 1.90 0.00 0.00 1.98
19 20 0.392706 TATGCCGGTTCATGCGATCT 59.607 50.000 1.90 0.00 0.00 2.75
20 21 1.442769 ATATGCCGGTTCATGCGATC 58.557 50.000 1.90 0.00 0.00 3.69
21 22 1.806542 GAATATGCCGGTTCATGCGAT 59.193 47.619 1.90 0.00 0.00 4.58
22 23 1.225855 GAATATGCCGGTTCATGCGA 58.774 50.000 1.90 0.00 0.00 5.10
23 24 0.238289 GGAATATGCCGGTTCATGCG 59.762 55.000 1.90 0.00 0.00 4.73
24 25 1.001378 GTGGAATATGCCGGTTCATGC 60.001 52.381 1.90 0.00 0.00 4.06
25 26 2.575532 AGTGGAATATGCCGGTTCATG 58.424 47.619 1.90 0.00 0.00 3.07
26 27 3.297134 AAGTGGAATATGCCGGTTCAT 57.703 42.857 1.90 0.81 0.00 2.57
27 28 2.799126 AAGTGGAATATGCCGGTTCA 57.201 45.000 1.90 0.00 0.00 3.18
28 29 3.432252 CGATAAGTGGAATATGCCGGTTC 59.568 47.826 1.90 0.00 0.00 3.62
29 30 3.070446 TCGATAAGTGGAATATGCCGGTT 59.930 43.478 1.90 0.00 0.00 4.44
30 31 2.631062 TCGATAAGTGGAATATGCCGGT 59.369 45.455 1.90 0.00 0.00 5.28
31 32 3.313012 TCGATAAGTGGAATATGCCGG 57.687 47.619 0.00 0.00 0.00 6.13
32 33 3.618594 CCATCGATAAGTGGAATATGCCG 59.381 47.826 0.00 0.00 37.72 5.69
33 34 3.375299 GCCATCGATAAGTGGAATATGCC 59.625 47.826 6.97 0.00 37.72 4.40
34 35 4.002982 TGCCATCGATAAGTGGAATATGC 58.997 43.478 6.97 0.00 37.72 3.14
35 36 4.633126 CCTGCCATCGATAAGTGGAATATG 59.367 45.833 6.97 0.00 37.72 1.78
36 37 4.287067 ACCTGCCATCGATAAGTGGAATAT 59.713 41.667 6.97 0.00 37.72 1.28
37 38 3.646162 ACCTGCCATCGATAAGTGGAATA 59.354 43.478 6.97 0.00 37.72 1.75
38 39 2.439507 ACCTGCCATCGATAAGTGGAAT 59.560 45.455 6.97 0.00 37.72 3.01
39 40 1.837439 ACCTGCCATCGATAAGTGGAA 59.163 47.619 6.97 0.00 37.72 3.53
40 41 1.496060 ACCTGCCATCGATAAGTGGA 58.504 50.000 6.97 0.00 37.72 4.02
41 42 2.158900 AGAACCTGCCATCGATAAGTGG 60.159 50.000 0.00 0.00 38.55 4.00
42 43 2.868583 CAGAACCTGCCATCGATAAGTG 59.131 50.000 0.00 0.00 0.00 3.16
43 44 2.501723 ACAGAACCTGCCATCGATAAGT 59.498 45.455 0.00 0.00 34.37 2.24
44 45 3.185246 ACAGAACCTGCCATCGATAAG 57.815 47.619 0.00 0.00 34.37 1.73
45 46 4.746535 TTACAGAACCTGCCATCGATAA 57.253 40.909 0.00 0.00 34.37 1.75
46 47 4.955811 ATTACAGAACCTGCCATCGATA 57.044 40.909 0.00 0.00 34.37 2.92
47 48 3.845781 ATTACAGAACCTGCCATCGAT 57.154 42.857 0.00 0.00 34.37 3.59
48 49 3.627395 AATTACAGAACCTGCCATCGA 57.373 42.857 0.00 0.00 34.37 3.59
49 50 3.065371 GGAAATTACAGAACCTGCCATCG 59.935 47.826 0.00 0.00 34.37 3.84
50 51 4.016444 TGGAAATTACAGAACCTGCCATC 58.984 43.478 0.00 0.00 34.37 3.51
51 52 3.763897 GTGGAAATTACAGAACCTGCCAT 59.236 43.478 0.00 0.00 34.37 4.40
52 53 3.153919 GTGGAAATTACAGAACCTGCCA 58.846 45.455 0.00 0.00 34.37 4.92
53 54 3.153919 TGTGGAAATTACAGAACCTGCC 58.846 45.455 0.00 0.00 34.37 4.85
54 55 4.846779 TTGTGGAAATTACAGAACCTGC 57.153 40.909 0.00 0.00 34.37 4.85
55 56 6.391227 AGTTTGTGGAAATTACAGAACCTG 57.609 37.500 0.00 0.00 37.52 4.00
56 57 5.535030 GGAGTTTGTGGAAATTACAGAACCT 59.465 40.000 0.00 0.00 0.00 3.50
57 58 5.300792 TGGAGTTTGTGGAAATTACAGAACC 59.699 40.000 0.00 0.00 0.00 3.62
58 59 6.385649 TGGAGTTTGTGGAAATTACAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
59 60 6.775142 TGATGGAGTTTGTGGAAATTACAGAA 59.225 34.615 0.00 0.00 26.02 3.02
60 61 6.303054 TGATGGAGTTTGTGGAAATTACAGA 58.697 36.000 0.00 0.00 26.02 3.41
61 62 6.573664 TGATGGAGTTTGTGGAAATTACAG 57.426 37.500 0.00 0.00 26.02 2.74
62 63 7.537596 AATGATGGAGTTTGTGGAAATTACA 57.462 32.000 0.00 0.00 0.00 2.41
63 64 8.831715 AAAATGATGGAGTTTGTGGAAATTAC 57.168 30.769 0.00 0.00 0.00 1.89
64 65 8.869109 AGAAAATGATGGAGTTTGTGGAAATTA 58.131 29.630 0.00 0.00 0.00 1.40
65 66 7.658575 CAGAAAATGATGGAGTTTGTGGAAATT 59.341 33.333 0.00 0.00 31.21 1.82
66 67 7.156673 CAGAAAATGATGGAGTTTGTGGAAAT 58.843 34.615 0.00 0.00 31.21 2.17
67 68 6.514947 CAGAAAATGATGGAGTTTGTGGAAA 58.485 36.000 0.00 0.00 31.21 3.13
68 69 6.088016 CAGAAAATGATGGAGTTTGTGGAA 57.912 37.500 0.00 0.00 31.21 3.53
69 70 5.710513 CAGAAAATGATGGAGTTTGTGGA 57.289 39.130 0.00 0.00 31.21 4.02
70 71 4.813027 CCAGAAAATGATGGAGTTTGTGG 58.187 43.478 0.00 0.00 43.93 4.17
71 72 5.710513 TCCAGAAAATGATGGAGTTTGTG 57.289 39.130 0.00 0.00 40.70 3.33
79 80 3.242969 CGTGCAGATCCAGAAAATGATGG 60.243 47.826 0.00 0.00 37.97 3.51
80 81 3.376234 ACGTGCAGATCCAGAAAATGATG 59.624 43.478 0.00 0.00 0.00 3.07
81 82 3.614092 ACGTGCAGATCCAGAAAATGAT 58.386 40.909 0.00 0.00 0.00 2.45
82 83 3.057969 ACGTGCAGATCCAGAAAATGA 57.942 42.857 0.00 0.00 0.00 2.57
83 84 3.495193 CAACGTGCAGATCCAGAAAATG 58.505 45.455 0.00 0.00 0.00 2.32
84 85 2.489329 CCAACGTGCAGATCCAGAAAAT 59.511 45.455 0.00 0.00 0.00 1.82
85 86 1.879380 CCAACGTGCAGATCCAGAAAA 59.121 47.619 0.00 0.00 0.00 2.29
86 87 1.202758 ACCAACGTGCAGATCCAGAAA 60.203 47.619 0.00 0.00 0.00 2.52
87 88 0.396435 ACCAACGTGCAGATCCAGAA 59.604 50.000 0.00 0.00 0.00 3.02
88 89 1.262417 TACCAACGTGCAGATCCAGA 58.738 50.000 0.00 0.00 0.00 3.86
89 90 2.315925 ATACCAACGTGCAGATCCAG 57.684 50.000 0.00 0.00 0.00 3.86
90 91 2.746904 CAAATACCAACGTGCAGATCCA 59.253 45.455 0.00 0.00 0.00 3.41
91 92 2.097466 CCAAATACCAACGTGCAGATCC 59.903 50.000 0.00 0.00 0.00 3.36
92 93 2.747446 ACCAAATACCAACGTGCAGATC 59.253 45.455 0.00 0.00 0.00 2.75
93 94 2.790433 ACCAAATACCAACGTGCAGAT 58.210 42.857 0.00 0.00 0.00 2.90
94 95 2.264005 ACCAAATACCAACGTGCAGA 57.736 45.000 0.00 0.00 0.00 4.26
95 96 3.749088 TCTTACCAAATACCAACGTGCAG 59.251 43.478 0.00 0.00 0.00 4.41
96 97 3.741249 TCTTACCAAATACCAACGTGCA 58.259 40.909 0.00 0.00 0.00 4.57
97 98 4.957759 ATCTTACCAAATACCAACGTGC 57.042 40.909 0.00 0.00 0.00 5.34
98 99 7.780008 TGATATCTTACCAAATACCAACGTG 57.220 36.000 3.98 0.00 0.00 4.49
99 100 8.974060 ATTGATATCTTACCAAATACCAACGT 57.026 30.769 3.98 0.00 0.00 3.99
111 112 9.931210 CCGTGAAAAAGTAATTGATATCTTACC 57.069 33.333 3.98 0.00 0.00 2.85
112 113 9.931210 CCCGTGAAAAAGTAATTGATATCTTAC 57.069 33.333 3.98 5.62 0.00 2.34
113 114 9.893634 TCCCGTGAAAAAGTAATTGATATCTTA 57.106 29.630 3.98 0.00 0.00 2.10
114 115 8.801882 TCCCGTGAAAAAGTAATTGATATCTT 57.198 30.769 3.98 0.00 0.00 2.40
115 116 8.801882 TTCCCGTGAAAAAGTAATTGATATCT 57.198 30.769 3.98 0.00 0.00 1.98
116 117 9.450807 CATTCCCGTGAAAAAGTAATTGATATC 57.549 33.333 0.00 0.00 33.32 1.63
117 118 8.413229 CCATTCCCGTGAAAAAGTAATTGATAT 58.587 33.333 0.00 0.00 33.32 1.63
118 119 7.394923 ACCATTCCCGTGAAAAAGTAATTGATA 59.605 33.333 0.00 0.00 33.32 2.15
119 120 6.210584 ACCATTCCCGTGAAAAAGTAATTGAT 59.789 34.615 0.00 0.00 33.32 2.57
120 121 5.536916 ACCATTCCCGTGAAAAAGTAATTGA 59.463 36.000 0.00 0.00 33.32 2.57
121 122 5.778862 ACCATTCCCGTGAAAAAGTAATTG 58.221 37.500 0.00 0.00 33.32 2.32
122 123 6.152154 CCTACCATTCCCGTGAAAAAGTAATT 59.848 38.462 0.00 0.00 33.32 1.40
123 124 5.650703 CCTACCATTCCCGTGAAAAAGTAAT 59.349 40.000 0.00 0.00 33.32 1.89
124 125 5.005094 CCTACCATTCCCGTGAAAAAGTAA 58.995 41.667 0.00 0.00 33.32 2.24
125 126 4.286549 TCCTACCATTCCCGTGAAAAAGTA 59.713 41.667 0.00 0.00 33.32 2.24
126 127 3.073356 TCCTACCATTCCCGTGAAAAAGT 59.927 43.478 0.00 0.00 33.32 2.66
127 128 3.681593 TCCTACCATTCCCGTGAAAAAG 58.318 45.455 0.00 0.00 33.32 2.27
128 129 3.791953 TCCTACCATTCCCGTGAAAAA 57.208 42.857 0.00 0.00 33.32 1.94
129 130 5.640158 ATATCCTACCATTCCCGTGAAAA 57.360 39.130 0.00 0.00 33.32 2.29
130 131 5.640158 AATATCCTACCATTCCCGTGAAA 57.360 39.130 0.00 0.00 33.32 2.69
131 132 6.750660 TTAATATCCTACCATTCCCGTGAA 57.249 37.500 0.00 0.00 34.33 3.18
132 133 6.945636 ATTAATATCCTACCATTCCCGTGA 57.054 37.500 0.00 0.00 0.00 4.35
133 134 8.098286 TGTAATTAATATCCTACCATTCCCGTG 58.902 37.037 0.00 0.00 0.00 4.94
134 135 8.209802 TGTAATTAATATCCTACCATTCCCGT 57.790 34.615 0.00 0.00 0.00 5.28
135 136 9.109393 CATGTAATTAATATCCTACCATTCCCG 57.891 37.037 0.00 0.00 0.00 5.14
150 151 9.699410 TCCCTTGAAATCTGTCATGTAATTAAT 57.301 29.630 0.00 0.00 0.00 1.40
151 152 9.699410 ATCCCTTGAAATCTGTCATGTAATTAA 57.301 29.630 0.00 0.00 0.00 1.40
153 154 9.347240 CTATCCCTTGAAATCTGTCATGTAATT 57.653 33.333 0.00 0.00 0.00 1.40
154 155 7.446625 GCTATCCCTTGAAATCTGTCATGTAAT 59.553 37.037 0.00 0.00 0.00 1.89
155 156 6.767902 GCTATCCCTTGAAATCTGTCATGTAA 59.232 38.462 0.00 0.00 0.00 2.41
156 157 6.291377 GCTATCCCTTGAAATCTGTCATGTA 58.709 40.000 0.00 0.00 0.00 2.29
157 158 5.128919 GCTATCCCTTGAAATCTGTCATGT 58.871 41.667 0.00 0.00 0.00 3.21
158 159 4.212847 CGCTATCCCTTGAAATCTGTCATG 59.787 45.833 0.00 0.00 0.00 3.07
159 160 4.141620 ACGCTATCCCTTGAAATCTGTCAT 60.142 41.667 0.00 0.00 0.00 3.06
160 161 3.197766 ACGCTATCCCTTGAAATCTGTCA 59.802 43.478 0.00 0.00 0.00 3.58
161 162 3.798202 ACGCTATCCCTTGAAATCTGTC 58.202 45.455 0.00 0.00 0.00 3.51
162 163 3.914426 ACGCTATCCCTTGAAATCTGT 57.086 42.857 0.00 0.00 0.00 3.41
163 164 4.191544 TCAACGCTATCCCTTGAAATCTG 58.808 43.478 0.00 0.00 0.00 2.90
164 165 4.080863 ACTCAACGCTATCCCTTGAAATCT 60.081 41.667 0.00 0.00 0.00 2.40
165 166 4.192317 ACTCAACGCTATCCCTTGAAATC 58.808 43.478 0.00 0.00 0.00 2.17
166 167 4.192317 GACTCAACGCTATCCCTTGAAAT 58.808 43.478 0.00 0.00 0.00 2.17
167 168 3.007506 TGACTCAACGCTATCCCTTGAAA 59.992 43.478 0.00 0.00 0.00 2.69
168 169 2.565391 TGACTCAACGCTATCCCTTGAA 59.435 45.455 0.00 0.00 0.00 2.69
169 170 2.176045 TGACTCAACGCTATCCCTTGA 58.824 47.619 0.00 0.00 0.00 3.02
170 171 2.672961 TGACTCAACGCTATCCCTTG 57.327 50.000 0.00 0.00 0.00 3.61
171 172 3.695830 TTTGACTCAACGCTATCCCTT 57.304 42.857 0.00 0.00 0.00 3.95
172 173 3.244422 TGTTTTGACTCAACGCTATCCCT 60.244 43.478 0.00 0.00 0.00 4.20
173 174 3.071479 TGTTTTGACTCAACGCTATCCC 58.929 45.455 0.00 0.00 0.00 3.85
174 175 4.154195 ACATGTTTTGACTCAACGCTATCC 59.846 41.667 0.00 0.00 0.00 2.59
175 176 5.283060 ACATGTTTTGACTCAACGCTATC 57.717 39.130 0.00 0.00 0.00 2.08
176 177 5.689383 AACATGTTTTGACTCAACGCTAT 57.311 34.783 4.92 0.00 0.00 2.97
177 178 5.493133 AAACATGTTTTGACTCAACGCTA 57.507 34.783 18.13 0.00 0.00 4.26
178 179 4.370364 AAACATGTTTTGACTCAACGCT 57.630 36.364 18.13 0.00 0.00 5.07
179 180 7.149031 GGTTATAAACATGTTTTGACTCAACGC 60.149 37.037 27.66 12.45 34.23 4.84
180 181 7.858382 TGGTTATAAACATGTTTTGACTCAACG 59.142 33.333 27.66 0.00 34.23 4.10
181 182 9.522804 TTGGTTATAAACATGTTTTGACTCAAC 57.477 29.630 27.66 19.31 34.23 3.18
183 184 9.689976 CATTGGTTATAAACATGTTTTGACTCA 57.310 29.630 27.66 17.42 34.23 3.41
184 185 9.139174 CCATTGGTTATAAACATGTTTTGACTC 57.861 33.333 27.66 15.37 34.23 3.36
185 186 7.602265 GCCATTGGTTATAAACATGTTTTGACT 59.398 33.333 27.66 13.23 34.23 3.41
186 187 7.386299 TGCCATTGGTTATAAACATGTTTTGAC 59.614 33.333 27.66 21.04 34.23 3.18
187 188 7.445121 TGCCATTGGTTATAAACATGTTTTGA 58.555 30.769 27.66 12.43 34.23 2.69
188 189 7.664082 TGCCATTGGTTATAAACATGTTTTG 57.336 32.000 27.66 16.67 34.23 2.44
189 190 8.728833 CATTGCCATTGGTTATAAACATGTTTT 58.271 29.630 27.66 17.34 34.23 2.43
190 191 7.336427 CCATTGCCATTGGTTATAAACATGTTT 59.664 33.333 25.99 25.99 36.63 2.83
191 192 6.822676 CCATTGCCATTGGTTATAAACATGTT 59.177 34.615 4.92 4.92 0.00 2.71
192 193 6.070309 ACCATTGCCATTGGTTATAAACATGT 60.070 34.615 3.54 0.00 45.19 3.21
193 194 6.258287 CACCATTGCCATTGGTTATAAACATG 59.742 38.462 8.51 5.19 45.19 3.21
194 195 6.347696 CACCATTGCCATTGGTTATAAACAT 58.652 36.000 8.51 0.00 45.19 2.71
195 196 5.337894 CCACCATTGCCATTGGTTATAAACA 60.338 40.000 8.51 0.00 45.19 2.83
196 197 5.105146 TCCACCATTGCCATTGGTTATAAAC 60.105 40.000 8.51 0.00 45.19 2.01
197 198 5.026121 TCCACCATTGCCATTGGTTATAAA 58.974 37.500 8.51 0.00 45.19 1.40
198 199 4.614475 TCCACCATTGCCATTGGTTATAA 58.386 39.130 8.51 0.00 45.19 0.98
199 200 4.256983 TCCACCATTGCCATTGGTTATA 57.743 40.909 8.51 0.00 45.19 0.98
200 201 3.113191 TCCACCATTGCCATTGGTTAT 57.887 42.857 8.51 0.00 45.19 1.89
201 202 2.612285 TCCACCATTGCCATTGGTTA 57.388 45.000 8.51 0.00 45.19 2.85
202 203 1.727062 TTCCACCATTGCCATTGGTT 58.273 45.000 8.51 0.00 45.19 3.67
204 205 2.855209 TTTTCCACCATTGCCATTGG 57.145 45.000 4.10 4.10 40.26 3.16
205 206 6.623331 GCTTTAATTTTCCACCATTGCCATTG 60.623 38.462 0.00 0.00 0.00 2.82
206 207 5.415389 GCTTTAATTTTCCACCATTGCCATT 59.585 36.000 0.00 0.00 0.00 3.16
207 208 4.943093 GCTTTAATTTTCCACCATTGCCAT 59.057 37.500 0.00 0.00 0.00 4.40
208 209 4.322567 GCTTTAATTTTCCACCATTGCCA 58.677 39.130 0.00 0.00 0.00 4.92
209 210 3.370672 CGCTTTAATTTTCCACCATTGCC 59.629 43.478 0.00 0.00 0.00 4.52
210 211 3.993736 ACGCTTTAATTTTCCACCATTGC 59.006 39.130 0.00 0.00 0.00 3.56
211 212 7.644986 TTAACGCTTTAATTTTCCACCATTG 57.355 32.000 0.00 0.00 0.00 2.82
212 213 7.095982 CGTTTAACGCTTTAATTTTCCACCATT 60.096 33.333 4.11 0.00 33.65 3.16
213 214 6.363896 CGTTTAACGCTTTAATTTTCCACCAT 59.636 34.615 4.11 0.00 33.65 3.55
214 215 5.686397 CGTTTAACGCTTTAATTTTCCACCA 59.314 36.000 4.11 0.00 33.65 4.17
215 216 6.131137 CGTTTAACGCTTTAATTTTCCACC 57.869 37.500 4.11 0.00 33.65 4.61
230 231 5.756694 GTTGAGCACCAAACACGTTTAACG 61.757 45.833 16.31 16.31 41.26 3.18
231 232 3.408288 TGAGCACCAAACACGTTTAAC 57.592 42.857 0.00 0.00 0.00 2.01
232 233 3.190744 TGTTGAGCACCAAACACGTTTAA 59.809 39.130 0.00 0.00 36.36 1.52
233 234 2.747989 TGTTGAGCACCAAACACGTTTA 59.252 40.909 0.00 0.00 36.36 2.01
234 235 1.542030 TGTTGAGCACCAAACACGTTT 59.458 42.857 0.00 0.00 36.36 3.60
235 236 1.169577 TGTTGAGCACCAAACACGTT 58.830 45.000 0.00 0.00 36.36 3.99
236 237 1.388547 ATGTTGAGCACCAAACACGT 58.611 45.000 0.00 0.00 36.36 4.49
237 238 2.490328 AATGTTGAGCACCAAACACG 57.510 45.000 0.00 0.00 36.36 4.49
238 239 4.787598 CTCTAATGTTGAGCACCAAACAC 58.212 43.478 0.00 0.00 36.36 3.32
248 249 6.961554 GTGGTTTAAATCGCTCTAATGTTGAG 59.038 38.462 4.73 0.00 34.87 3.02
249 250 6.653320 AGTGGTTTAAATCGCTCTAATGTTGA 59.347 34.615 8.75 0.00 0.00 3.18
250 251 6.842163 AGTGGTTTAAATCGCTCTAATGTTG 58.158 36.000 8.75 0.00 0.00 3.33
251 252 8.038944 TCTAGTGGTTTAAATCGCTCTAATGTT 58.961 33.333 17.55 0.00 31.28 2.71
252 253 7.553334 TCTAGTGGTTTAAATCGCTCTAATGT 58.447 34.615 17.55 0.00 31.28 2.71
253 254 8.594881 ATCTAGTGGTTTAAATCGCTCTAATG 57.405 34.615 17.55 5.47 31.28 1.90
269 270 9.924650 GACCGTTAAATCATATTATCTAGTGGT 57.075 33.333 0.00 0.00 0.00 4.16
270 271 9.923143 TGACCGTTAAATCATATTATCTAGTGG 57.077 33.333 0.00 0.00 0.00 4.00
281 282 8.620416 CCAAATCATCTTGACCGTTAAATCATA 58.380 33.333 0.00 0.00 0.00 2.15
282 283 7.339212 TCCAAATCATCTTGACCGTTAAATCAT 59.661 33.333 0.00 0.00 0.00 2.45
283 284 6.657117 TCCAAATCATCTTGACCGTTAAATCA 59.343 34.615 0.00 0.00 0.00 2.57
284 285 7.083875 TCCAAATCATCTTGACCGTTAAATC 57.916 36.000 0.00 0.00 0.00 2.17
285 286 7.557719 AGATCCAAATCATCTTGACCGTTAAAT 59.442 33.333 0.00 0.00 34.07 1.40
286 287 6.884295 AGATCCAAATCATCTTGACCGTTAAA 59.116 34.615 0.00 0.00 34.07 1.52
287 288 6.316140 CAGATCCAAATCATCTTGACCGTTAA 59.684 38.462 0.00 0.00 34.07 2.01
288 289 5.817296 CAGATCCAAATCATCTTGACCGTTA 59.183 40.000 0.00 0.00 34.07 3.18
289 290 4.637534 CAGATCCAAATCATCTTGACCGTT 59.362 41.667 0.00 0.00 34.07 4.44
290 291 4.194640 CAGATCCAAATCATCTTGACCGT 58.805 43.478 0.00 0.00 34.07 4.83
291 292 3.003068 GCAGATCCAAATCATCTTGACCG 59.997 47.826 0.00 0.00 34.07 4.79
292 293 4.205587 AGCAGATCCAAATCATCTTGACC 58.794 43.478 0.00 0.00 34.07 4.02
293 294 4.880120 TGAGCAGATCCAAATCATCTTGAC 59.120 41.667 0.00 0.00 34.07 3.18
294 295 5.106876 TGAGCAGATCCAAATCATCTTGA 57.893 39.130 0.00 0.00 34.07 3.02
295 296 6.392625 AATGAGCAGATCCAAATCATCTTG 57.607 37.500 0.00 0.00 34.07 3.02
296 297 6.605995 TCAAATGAGCAGATCCAAATCATCTT 59.394 34.615 0.00 0.00 34.07 2.40
297 298 6.127101 TCAAATGAGCAGATCCAAATCATCT 58.873 36.000 0.00 0.00 34.07 2.90
298 299 6.039493 ACTCAAATGAGCAGATCCAAATCATC 59.961 38.462 10.28 0.00 45.79 2.92
299 300 5.892119 ACTCAAATGAGCAGATCCAAATCAT 59.108 36.000 10.28 0.00 45.79 2.45
300 301 5.258841 ACTCAAATGAGCAGATCCAAATCA 58.741 37.500 10.28 0.00 45.79 2.57
301 302 5.589452 AGACTCAAATGAGCAGATCCAAATC 59.411 40.000 10.28 0.00 45.79 2.17
302 303 5.507637 AGACTCAAATGAGCAGATCCAAAT 58.492 37.500 10.28 0.00 45.79 2.32
303 304 4.914983 AGACTCAAATGAGCAGATCCAAA 58.085 39.130 10.28 0.00 45.79 3.28
304 305 4.564782 AGACTCAAATGAGCAGATCCAA 57.435 40.909 10.28 0.00 45.79 3.53
305 306 4.564782 AAGACTCAAATGAGCAGATCCA 57.435 40.909 10.28 0.00 45.79 3.41
306 307 5.893897 AAAAGACTCAAATGAGCAGATCC 57.106 39.130 10.28 0.00 45.79 3.36
310 311 9.512435 CCAATATAAAAAGACTCAAATGAGCAG 57.488 33.333 10.28 0.00 45.79 4.24
311 312 9.023962 ACCAATATAAAAAGACTCAAATGAGCA 57.976 29.630 10.28 0.00 45.79 4.26
785 789 1.153289 GCCCATCTGTGCAGATCGT 60.153 57.895 11.38 0.00 45.78 3.73
827 831 3.633418 AGTAGGCTTTAGGATGTCGAGT 58.367 45.455 0.00 0.00 0.00 4.18
844 848 5.376625 TGGGCATTTTCAGGCTTATAGTAG 58.623 41.667 0.00 0.00 0.00 2.57
845 849 5.381184 TGGGCATTTTCAGGCTTATAGTA 57.619 39.130 0.00 0.00 0.00 1.82
862 895 1.382629 GGGCTTAGGAGTTTGGGCA 59.617 57.895 0.00 0.00 0.00 5.36
1122 1156 3.949885 TACCTTGGGGCGCTCGAGA 62.950 63.158 18.75 0.00 35.63 4.04
1153 1187 2.536106 GGGGTAGGGTTTGGGGGT 60.536 66.667 0.00 0.00 0.00 4.95
1305 1361 2.360475 GTGCCCCTTGACCTGCTC 60.360 66.667 0.00 0.00 0.00 4.26
1435 1491 2.254546 TCAGAAACTCACAACGCCAT 57.745 45.000 0.00 0.00 0.00 4.40
1571 1635 5.358160 CCAAATATTCCCCAGACTTCAGTTC 59.642 44.000 0.00 0.00 0.00 3.01
1589 1653 4.927267 ACTGGAATGACACTCCCAAATA 57.073 40.909 0.00 0.00 31.32 1.40
1651 1715 0.393537 GGAGTGACCTGGAATGGCAG 60.394 60.000 0.00 0.00 35.41 4.85
1704 1768 5.712917 TGTAATTATTTCCCAAGTCCACACC 59.287 40.000 0.00 0.00 0.00 4.16
1772 1837 4.773323 AATGCTAGGTTTTGCTCTGAAC 57.227 40.909 0.00 0.00 0.00 3.18
1801 1866 4.853468 TTGGGTAATAGCCATCAGACAA 57.147 40.909 12.37 0.00 46.30 3.18
1990 2341 5.151389 TGCGCTATGTATGTGTTACGATAG 58.849 41.667 9.73 0.00 46.19 2.08
2005 2356 6.111768 ACAAGAAAATAAGACTGCGCTATG 57.888 37.500 9.73 0.99 0.00 2.23
2037 2388 6.697019 GCACACTGTCAGTATGTGAAAAATTT 59.303 34.615 21.70 0.00 45.34 1.82
2517 2874 8.504005 CGATAAAACAAGATTTGAAGTACTGGT 58.496 33.333 0.00 0.00 0.00 4.00
2570 2940 8.087303 AGCAGATATCAATATAGCAATCCTGA 57.913 34.615 5.32 0.00 0.00 3.86
3031 3409 7.855904 GGTACATAAATAAATCTTTGTGGCTCG 59.144 37.037 0.00 0.00 33.14 5.03
3161 3565 7.814587 CCCATGAACCTTAAACAGAGAATTTTC 59.185 37.037 0.00 0.00 0.00 2.29
3170 3575 3.157087 ACAGCCCATGAACCTTAAACAG 58.843 45.455 0.00 0.00 0.00 3.16
3233 3639 6.879993 ACGATGACATACCTATAGACCTACTG 59.120 42.308 0.00 0.00 0.00 2.74
3234 3640 7.018487 ACGATGACATACCTATAGACCTACT 57.982 40.000 0.00 0.00 0.00 2.57
3235 3641 7.389884 TCAACGATGACATACCTATAGACCTAC 59.610 40.741 0.00 0.00 0.00 3.18
3462 3872 8.925447 TGACATTATCCCATATATAGGAACCA 57.075 34.615 3.86 0.00 35.30 3.67
3614 4110 4.406003 TCCTAAAGGAGAAGTGGATAGCAC 59.594 45.833 0.00 0.00 39.78 4.40
4644 5152 4.098044 AGGGTGACTGACTTATATGTGTCG 59.902 45.833 0.00 4.13 36.10 4.35
4664 5172 3.521937 TCCAGGTCAAACCATACTTAGGG 59.478 47.826 0.00 0.00 41.95 3.53
4750 5258 1.909376 CAATGTCATCTGCTTGCAGC 58.091 50.000 16.91 4.63 42.82 5.25
4751 5259 1.201414 TGCAATGTCATCTGCTTGCAG 59.799 47.619 15.74 15.74 46.43 4.41
4824 5332 7.787725 AACGCTCTTATATTTCTTTACAGGG 57.212 36.000 0.00 0.00 0.00 4.45
4838 5346 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
4839 5347 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
4840 5348 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
4841 5349 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
4872 5380 7.661847 CCCTCTGTAAAGAAACATAAGAGTGTT 59.338 37.037 0.00 0.00 43.78 3.32
4873 5381 7.016268 TCCCTCTGTAAAGAAACATAAGAGTGT 59.984 37.037 0.00 0.00 0.00 3.55
4874 5382 7.386851 TCCCTCTGTAAAGAAACATAAGAGTG 58.613 38.462 0.00 0.00 0.00 3.51
4875 5383 7.235812 ACTCCCTCTGTAAAGAAACATAAGAGT 59.764 37.037 0.00 0.00 0.00 3.24
4876 5384 7.616313 ACTCCCTCTGTAAAGAAACATAAGAG 58.384 38.462 0.00 0.00 0.00 2.85
4877 5385 7.554959 ACTCCCTCTGTAAAGAAACATAAGA 57.445 36.000 0.00 0.00 0.00 2.10
4878 5386 8.532819 AGTACTCCCTCTGTAAAGAAACATAAG 58.467 37.037 0.00 0.00 0.00 1.73
4879 5387 8.431910 AGTACTCCCTCTGTAAAGAAACATAA 57.568 34.615 0.00 0.00 0.00 1.90
4880 5388 8.964772 GTAGTACTCCCTCTGTAAAGAAACATA 58.035 37.037 0.00 0.00 0.00 2.29
4881 5389 6.936968 AGTACTCCCTCTGTAAAGAAACAT 57.063 37.500 0.00 0.00 0.00 2.71
4882 5390 6.779049 TGTAGTACTCCCTCTGTAAAGAAACA 59.221 38.462 0.00 0.00 0.00 2.83
4883 5391 7.224522 TGTAGTACTCCCTCTGTAAAGAAAC 57.775 40.000 0.00 0.00 0.00 2.78
4884 5392 9.710818 ATATGTAGTACTCCCTCTGTAAAGAAA 57.289 33.333 0.00 0.00 0.00 2.52
4885 5393 9.352191 GATATGTAGTACTCCCTCTGTAAAGAA 57.648 37.037 0.00 0.00 0.00 2.52
4886 5394 8.500238 TGATATGTAGTACTCCCTCTGTAAAGA 58.500 37.037 0.00 0.00 0.00 2.52
4887 5395 8.693120 TGATATGTAGTACTCCCTCTGTAAAG 57.307 38.462 0.00 0.00 0.00 1.85
4888 5396 9.132923 CTTGATATGTAGTACTCCCTCTGTAAA 57.867 37.037 0.00 0.00 0.00 2.01
4889 5397 8.500238 TCTTGATATGTAGTACTCCCTCTGTAA 58.500 37.037 0.00 0.00 0.00 2.41
4890 5398 8.042286 TCTTGATATGTAGTACTCCCTCTGTA 57.958 38.462 0.00 0.00 0.00 2.74
4891 5399 6.912426 TCTTGATATGTAGTACTCCCTCTGT 58.088 40.000 0.00 0.00 0.00 3.41
4892 5400 7.825331 TTCTTGATATGTAGTACTCCCTCTG 57.175 40.000 0.00 0.00 0.00 3.35
4893 5401 9.084533 GAATTCTTGATATGTAGTACTCCCTCT 57.915 37.037 0.00 0.00 0.00 3.69
4894 5402 8.861086 TGAATTCTTGATATGTAGTACTCCCTC 58.139 37.037 7.05 0.00 0.00 4.30
4895 5403 8.783660 TGAATTCTTGATATGTAGTACTCCCT 57.216 34.615 7.05 0.00 0.00 4.20
4896 5404 9.482627 CTTGAATTCTTGATATGTAGTACTCCC 57.517 37.037 7.05 0.00 0.00 4.30
4930 5438 8.634335 TGTTCCATATGAAAAGAAGTGATTGA 57.366 30.769 3.65 0.00 33.94 2.57
5017 5527 4.158025 TGTGGTTTTACACGGTGTGAAAAT 59.842 37.500 26.29 2.71 44.21 1.82
5136 5663 5.705609 AATTAGAACAAGACACCGCAAAT 57.294 34.783 0.00 0.00 0.00 2.32
5409 6000 3.545703 ACCATTAGTAGATTGTGCAGCC 58.454 45.455 0.00 0.00 0.00 4.85
5451 6042 5.981088 TGCATCATGGTTCATAAAACTGT 57.019 34.783 0.00 0.00 0.00 3.55
5520 6111 8.152898 ACTGGTTCTTTACTCTTACGGTTAAAT 58.847 33.333 0.00 0.00 0.00 1.40
5663 6302 4.160065 CCCATATCAAAAAGTGCATGACCA 59.840 41.667 0.00 0.00 0.00 4.02
5944 6629 4.981674 CACACTTGACGCAATACCATTTTT 59.018 37.500 0.00 0.00 0.00 1.94
5961 6646 2.396590 ACCTGACAACGAACACACTT 57.603 45.000 0.00 0.00 0.00 3.16
6007 6692 2.969628 AAGGAACCTATGCTGACTCG 57.030 50.000 0.00 0.00 0.00 4.18
6152 7160 1.184431 TATGCAACCACATGGCAAGG 58.816 50.000 0.00 0.00 41.43 3.61
6223 7231 2.270527 GCCCCTCCAAGAGTCTGC 59.729 66.667 0.00 0.00 0.00 4.26
6236 7244 1.379044 CAACCACATCAGAGGCCCC 60.379 63.158 0.00 0.00 0.00 5.80
6245 7253 7.199766 TGAACATAAAACTTGACAACCACATC 58.800 34.615 0.00 0.00 0.00 3.06
6246 7254 7.106439 TGAACATAAAACTTGACAACCACAT 57.894 32.000 0.00 0.00 0.00 3.21
6265 7273 5.476091 AAACCCTGTTTTCAAACTGAACA 57.524 34.783 10.06 0.00 39.36 3.18
6268 7276 4.081365 GGGAAAACCCTGTTTTCAAACTGA 60.081 41.667 25.25 0.00 39.48 3.41
6358 7428 9.104713 AGTATTTCCATCTATATCACCATCACA 57.895 33.333 0.00 0.00 0.00 3.58
6428 7498 2.262423 ACCTTTGAGAACAGTGGAGC 57.738 50.000 0.00 0.00 0.00 4.70
6459 7529 7.222031 CACGGAACTTATCTGTAATCGAAATCA 59.778 37.037 0.00 0.00 46.15 2.57
6506 7577 7.862372 CAGTGCAAACAAAACTACATATGTTCT 59.138 33.333 14.77 0.00 35.09 3.01
6508 7579 6.420604 GCAGTGCAAACAAAACTACATATGTT 59.579 34.615 14.77 0.00 37.59 2.71
6539 7612 5.838529 TCAATTCTCAAACAGTCTACGTCA 58.161 37.500 0.00 0.00 0.00 4.35
6542 7616 6.951256 TCATCAATTCTCAAACAGTCTACG 57.049 37.500 0.00 0.00 0.00 3.51
6546 7620 7.814642 ACAAGATCATCAATTCTCAAACAGTC 58.185 34.615 0.00 0.00 0.00 3.51
6591 7667 4.913376 GCAAGATCTGCGTTCAATACAAT 58.087 39.130 0.00 0.00 42.37 2.71
6771 7847 2.480845 GCCAGGTAAATCTTACGCGAT 58.519 47.619 15.93 0.00 0.00 4.58
6841 7923 4.202441 CGGTTTGAATCATTCCCTCTGAT 58.798 43.478 0.00 0.00 34.86 2.90
6884 7966 0.915872 ACCACCATCATGCCAGGAGA 60.916 55.000 0.00 0.00 0.00 3.71
6894 7979 2.717390 CCGGAAATACAACCACCATCA 58.283 47.619 0.00 0.00 0.00 3.07
6977 8062 7.454260 AACATCTCAGTGGGATTTAGTTTTC 57.546 36.000 1.60 0.00 0.00 2.29
7000 8085 3.319137 AGTATGCTCAAGACAAGCGAA 57.681 42.857 0.00 0.00 42.83 4.70
7002 8087 4.177026 AGTTAGTATGCTCAAGACAAGCG 58.823 43.478 0.00 0.00 42.83 4.68
7031 8116 0.037046 GCCACTGCCAAGGAAAATGG 60.037 55.000 0.00 0.00 41.08 3.16
7280 8372 1.600636 CTGCGGGTCCATGTGTTGT 60.601 57.895 0.00 0.00 0.00 3.32
7381 8476 5.048083 TGGATGGACATCAAGTAAAACAAGC 60.048 40.000 13.72 0.00 39.54 4.01
7395 8490 1.063717 GGGGAACACATGGATGGACAT 60.064 52.381 0.00 0.00 0.00 3.06
7506 8611 2.801282 TCCATCCATCCATCTCCTCA 57.199 50.000 0.00 0.00 0.00 3.86
7508 8613 2.157895 TCCATCCATCCATCCATCTCCT 60.158 50.000 0.00 0.00 0.00 3.69
7531 8636 1.191535 TCCTCCCCACTACACAATCG 58.808 55.000 0.00 0.00 0.00 3.34
7533 8638 2.308866 CCTTTCCTCCCCACTACACAAT 59.691 50.000 0.00 0.00 0.00 2.71
7534 8639 1.702957 CCTTTCCTCCCCACTACACAA 59.297 52.381 0.00 0.00 0.00 3.33
7535 8640 1.132657 TCCTTTCCTCCCCACTACACA 60.133 52.381 0.00 0.00 0.00 3.72
7609 8723 3.466836 GGATCTACGCAATCCACATGAA 58.533 45.455 0.00 0.00 42.01 2.57
7719 8834 1.024579 AACAAAGCACGATAGGCCGG 61.025 55.000 0.00 0.00 43.77 6.13
7729 8844 2.195922 CAGTTGGCTGAAACAAAGCAC 58.804 47.619 0.00 0.00 45.28 4.40
7822 8944 2.202987 CAGTCCCTGCTCATCCGC 60.203 66.667 0.00 0.00 0.00 5.54
7852 8974 1.153489 GGAGAGCAATGCGCAGAGA 60.153 57.895 18.32 0.00 46.13 3.10
7859 8981 2.093553 AGAAGACAGAGGAGAGCAATGC 60.094 50.000 0.00 0.00 0.00 3.56
7916 9038 9.900112 AGTATTATATTTAGGAACTGAGGGAGT 57.100 33.333 0.00 0.00 41.52 3.85
7945 9067 8.250332 GCTCCTAGTCCATATTGAAATCTCTAG 58.750 40.741 0.00 0.00 0.00 2.43
7964 9086 8.821894 GTGTAGATTCACTTATTTTGCTCCTAG 58.178 37.037 0.00 0.00 35.68 3.02
7967 9089 7.550906 AGAGTGTAGATTCACTTATTTTGCTCC 59.449 37.037 0.98 0.00 46.81 4.70
8020 9151 9.499585 GCCTTTTTAGAGATTTTAATACGAACC 57.500 33.333 0.00 0.00 0.00 3.62
8049 9180 3.181478 ACGCTCCCTCCGTTTCTAAATAG 60.181 47.826 0.00 0.00 34.96 1.73
8050 9181 2.762327 ACGCTCCCTCCGTTTCTAAATA 59.238 45.455 0.00 0.00 34.96 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.