Multiple sequence alignment - TraesCS6A01G381300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G381300 chr6A 100.000 2940 0 0 1 2940 601139438 601136499 0.000000e+00 5430.0
1 TraesCS6A01G381300 chr6A 85.572 1303 132 21 1661 2940 601008608 601007339 0.000000e+00 1314.0
2 TraesCS6A01G381300 chr6A 86.062 739 83 15 1552 2271 600897451 600896714 0.000000e+00 776.0
3 TraesCS6A01G381300 chr6A 91.883 308 25 0 1111 1418 601033115 601032808 5.820000e-117 431.0
4 TraesCS6A01G381300 chr6A 84.264 394 40 10 1422 1808 601147850 601148228 5.990000e-97 364.0
5 TraesCS6A01G381300 chr6A 92.857 182 13 0 1110 1291 600913413 600913232 6.250000e-67 265.0
6 TraesCS6A01G381300 chr6A 91.053 190 15 1 1109 1296 600978182 600977993 3.760000e-64 255.0
7 TraesCS6A01G381300 chr6A 86.010 193 21 3 1443 1630 600958327 600958136 4.970000e-48 202.0
8 TraesCS6A01G381300 chr6A 89.147 129 14 0 1430 1558 601032096 601031968 8.430000e-36 161.0
9 TraesCS6A01G381300 chr6B 89.389 1310 119 11 1422 2724 691782868 691781572 0.000000e+00 1631.0
10 TraesCS6A01G381300 chr6B 84.956 565 63 9 1423 1979 691632430 691631880 1.190000e-153 553.0
11 TraesCS6A01G381300 chr6B 92.949 312 12 4 1107 1418 691783876 691783575 2.080000e-121 446.0
12 TraesCS6A01G381300 chr6B 80.868 507 73 12 2001 2497 691629358 691628866 7.690000e-101 377.0
13 TraesCS6A01G381300 chr6B 86.594 276 27 6 1983 2249 691631659 691631385 2.220000e-76 296.0
14 TraesCS6A01G381300 chr6B 82.659 346 38 12 774 1113 691784246 691783917 1.330000e-73 287.0
15 TraesCS6A01G381300 chr6B 93.158 190 11 1 1109 1296 691633457 691633268 8.020000e-71 278.0
16 TraesCS6A01G381300 chr6B 95.376 173 4 1 310 482 691784519 691784351 3.730000e-69 272.0
17 TraesCS6A01G381300 chr6D 88.848 816 83 7 2127 2940 454684075 454684884 0.000000e+00 996.0
18 TraesCS6A01G381300 chr6D 85.664 858 85 19 1428 2272 454657964 454657132 0.000000e+00 869.0
19 TraesCS6A01G381300 chr6D 83.612 659 61 25 679 1325 454661993 454662616 2.540000e-160 575.0
20 TraesCS6A01G381300 chr6D 83.632 391 42 9 1423 1808 454826895 454827268 6.030000e-92 348.0
21 TraesCS6A01G381300 chr6D 91.705 217 17 1 1423 1638 454673779 454673995 1.710000e-77 300.0
22 TraesCS6A01G381300 chr6D 92.718 206 12 1 1902 2104 454674012 454674217 7.970000e-76 294.0
23 TraesCS6A01G381300 chr6D 84.026 313 29 15 1107 1418 454658977 454658685 6.200000e-72 281.0
24 TraesCS6A01G381300 chr6D 94.915 177 9 0 1107 1283 454749510 454749334 8.020000e-71 278.0
25 TraesCS6A01G381300 chr6D 93.478 184 10 1 1100 1283 454825849 454826030 3.730000e-69 272.0
26 TraesCS6A01G381300 chr6D 97.143 105 3 0 1314 1418 454672959 454673063 8.370000e-41 178.0
27 TraesCS6A01G381300 chr6D 100.000 31 0 0 2101 2131 454675497 454675527 1.140000e-04 58.4
28 TraesCS6A01G381300 chr3B 79.680 438 81 8 2506 2940 409304985 409304553 2.850000e-80 309.0
29 TraesCS6A01G381300 chr3B 94.301 193 11 0 483 675 80442148 80442340 2.220000e-76 296.0
30 TraesCS6A01G381300 chr3B 94.301 193 11 0 483 675 716218931 716219123 2.220000e-76 296.0
31 TraesCS6A01G381300 chr3B 93.401 197 13 0 483 679 409907197 409907001 2.870000e-75 292.0
32 TraesCS6A01G381300 chr3B 90.385 52 4 1 138 188 20047471 20047420 1.890000e-07 67.6
33 TraesCS6A01G381300 chr7A 93.909 197 10 2 483 678 225247765 225247570 2.220000e-76 296.0
34 TraesCS6A01G381300 chr7A 81.776 214 30 8 2728 2939 281664482 281664688 1.400000e-38 171.0
35 TraesCS6A01G381300 chr7A 78.212 179 30 7 2763 2937 88024052 88024225 4.010000e-19 106.0
36 TraesCS6A01G381300 chr4B 94.301 193 11 0 487 679 292152374 292152182 2.220000e-76 296.0
37 TraesCS6A01G381300 chr2B 93.846 195 12 0 484 678 311691164 311691358 7.970000e-76 294.0
38 TraesCS6A01G381300 chr2A 93.467 199 11 2 483 680 47564502 47564305 7.970000e-76 294.0
39 TraesCS6A01G381300 chr4D 93.401 197 13 0 483 679 442784292 442784488 2.870000e-75 292.0
40 TraesCS6A01G381300 chr4D 93.401 197 13 0 483 679 460837694 460837890 2.870000e-75 292.0
41 TraesCS6A01G381300 chr1D 75.979 383 81 9 2562 2938 31705677 31706054 1.390000e-43 187.0
42 TraesCS6A01G381300 chr7B 79.897 194 39 0 2744 2937 238770982 238771175 3.050000e-30 143.0
43 TraesCS6A01G381300 chr3D 77.604 192 32 10 2743 2929 509543114 509543299 4.010000e-19 106.0
44 TraesCS6A01G381300 chr3D 97.143 35 1 0 1945 1979 447566238 447566204 3.160000e-05 60.2
45 TraesCS6A01G381300 chr1A 77.202 193 33 10 2742 2929 496559515 496559329 5.180000e-18 102.0
46 TraesCS6A01G381300 chr3A 74.346 191 37 10 1 188 50158461 50158642 1.460000e-08 71.3
47 TraesCS6A01G381300 chr5B 93.182 44 1 2 1943 1984 606015533 606015490 2.450000e-06 63.9
48 TraesCS6A01G381300 chr2D 92.683 41 1 2 1946 1984 70263747 70263707 1.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G381300 chr6A 601136499 601139438 2939 True 5430.0 5430 100.00000 1 2940 1 chr6A.!!$R6 2939
1 TraesCS6A01G381300 chr6A 601007339 601008608 1269 True 1314.0 1314 85.57200 1661 2940 1 chr6A.!!$R5 1279
2 TraesCS6A01G381300 chr6A 600896714 600897451 737 True 776.0 776 86.06200 1552 2271 1 chr6A.!!$R1 719
3 TraesCS6A01G381300 chr6A 601031968 601033115 1147 True 296.0 431 90.51500 1111 1558 2 chr6A.!!$R7 447
4 TraesCS6A01G381300 chr6B 691781572 691784519 2947 True 659.0 1631 90.09325 310 2724 4 chr6B.!!$R2 2414
5 TraesCS6A01G381300 chr6B 691628866 691633457 4591 True 376.0 553 86.39400 1109 2497 4 chr6B.!!$R1 1388
6 TraesCS6A01G381300 chr6D 454684075 454684884 809 False 996.0 996 88.84800 2127 2940 1 chr6D.!!$F2 813
7 TraesCS6A01G381300 chr6D 454657132 454658977 1845 True 575.0 869 84.84500 1107 2272 2 chr6D.!!$R2 1165
8 TraesCS6A01G381300 chr6D 454661993 454662616 623 False 575.0 575 83.61200 679 1325 1 chr6D.!!$F1 646
9 TraesCS6A01G381300 chr6D 454825849 454827268 1419 False 310.0 348 88.55500 1100 1808 2 chr6D.!!$F4 708
10 TraesCS6A01G381300 chr6D 454672959 454675527 2568 False 207.6 300 95.39150 1314 2131 4 chr6D.!!$F3 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 871 0.030773 TCGCTGTATCGCTCCATGAC 59.969 55.0 0.0 0.00 0.0 3.06 F
1643 2537 1.648467 GAAGATGACGGCAAGCCCAC 61.648 60.0 0.0 0.46 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2622 0.027455 TTTTCTGCAAGCACGTCACG 59.973 50.0 0.0 0.0 0.00 4.35 R
2446 7162 0.745128 AACCGCCAAAGTCGTTGACA 60.745 50.0 0.0 0.0 39.87 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.970859 ATCATTTCTTTTATCTCGAGGAATGT 57.029 30.769 13.56 0.00 37.55 2.71
41 42 8.792830 TCATTTCTTTTATCTCGAGGAATGTT 57.207 30.769 13.56 0.00 37.55 2.71
42 43 8.883731 TCATTTCTTTTATCTCGAGGAATGTTC 58.116 33.333 13.56 0.00 37.55 3.18
59 60 8.527567 GGAATGTTCCGTATTTTGATTTGAAA 57.472 30.769 0.00 0.00 37.65 2.69
60 61 8.983724 GGAATGTTCCGTATTTTGATTTGAAAA 58.016 29.630 0.00 0.00 37.65 2.29
90 91 9.631257 ATGATACCAAATATTGATGTTGAGTGA 57.369 29.630 0.00 0.00 0.00 3.41
91 92 9.460019 TGATACCAAATATTGATGTTGAGTGAA 57.540 29.630 0.00 0.00 0.00 3.18
94 95 8.125978 ACCAAATATTGATGTTGAGTGAATGT 57.874 30.769 0.00 0.00 0.00 2.71
95 96 8.587608 ACCAAATATTGATGTTGAGTGAATGTT 58.412 29.630 0.00 0.00 0.00 2.71
96 97 9.079833 CCAAATATTGATGTTGAGTGAATGTTC 57.920 33.333 0.00 0.00 0.00 3.18
97 98 9.850628 CAAATATTGATGTTGAGTGAATGTTCT 57.149 29.630 0.00 0.00 0.00 3.01
99 100 8.797350 ATATTGATGTTGAGTGAATGTTCTCA 57.203 30.769 0.00 0.00 38.66 3.27
100 101 6.940831 TTGATGTTGAGTGAATGTTCTCAA 57.059 33.333 3.91 3.91 44.80 3.02
108 109 8.633075 TTGAGTGAATGTTCTCAATTTGTTTC 57.367 30.769 3.91 0.00 43.02 2.78
109 110 7.202526 TGAGTGAATGTTCTCAATTTGTTTCC 58.797 34.615 0.00 0.00 37.69 3.13
110 111 7.068593 TGAGTGAATGTTCTCAATTTGTTTCCT 59.931 33.333 0.00 0.00 37.69 3.36
111 112 7.785033 AGTGAATGTTCTCAATTTGTTTCCTT 58.215 30.769 0.00 0.00 0.00 3.36
112 113 8.912988 AGTGAATGTTCTCAATTTGTTTCCTTA 58.087 29.630 0.00 0.00 0.00 2.69
113 114 9.528018 GTGAATGTTCTCAATTTGTTTCCTTAA 57.472 29.630 0.00 0.00 0.00 1.85
144 145 8.013236 CATTTTTAAAAATGTTAGGGTGTCCG 57.987 34.615 31.98 12.51 46.27 4.79
145 146 5.708877 TTTAAAAATGTTAGGGTGTCCGG 57.291 39.130 0.00 0.00 38.33 5.14
146 147 2.963599 AAAATGTTAGGGTGTCCGGT 57.036 45.000 0.00 0.00 38.33 5.28
147 148 2.194201 AAATGTTAGGGTGTCCGGTG 57.806 50.000 0.00 0.00 38.33 4.94
148 149 0.322187 AATGTTAGGGTGTCCGGTGC 60.322 55.000 0.00 0.00 38.33 5.01
149 150 1.485294 ATGTTAGGGTGTCCGGTGCA 61.485 55.000 0.00 0.00 38.33 4.57
150 151 1.670083 GTTAGGGTGTCCGGTGCAC 60.670 63.158 18.82 18.82 38.33 4.57
163 164 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
164 165 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
165 166 2.613506 GCACCGGTAGCACCACAAC 61.614 63.158 19.85 0.00 38.47 3.32
166 167 1.964373 CACCGGTAGCACCACAACC 60.964 63.158 6.87 0.00 38.47 3.77
167 168 2.428187 CCGGTAGCACCACAACCA 59.572 61.111 0.00 0.00 38.47 3.67
168 169 1.964373 CCGGTAGCACCACAACCAC 60.964 63.158 0.00 0.00 38.47 4.16
169 170 1.964373 CGGTAGCACCACAACCACC 60.964 63.158 6.21 0.00 38.47 4.61
170 171 1.964373 GGTAGCACCACAACCACCG 60.964 63.158 1.01 0.00 38.42 4.94
171 172 1.964373 GTAGCACCACAACCACCGG 60.964 63.158 0.00 0.00 0.00 5.28
172 173 2.445119 TAGCACCACAACCACCGGT 61.445 57.895 0.00 0.00 37.65 5.28
174 175 3.591835 CACCACAACCACCGGTGC 61.592 66.667 29.75 0.00 43.43 5.01
175 176 4.116585 ACCACAACCACCGGTGCA 62.117 61.111 29.75 0.00 35.34 4.57
176 177 3.591835 CCACAACCACCGGTGCAC 61.592 66.667 29.75 8.80 35.34 4.57
177 178 3.591835 CACAACCACCGGTGCACC 61.592 66.667 29.75 26.78 35.34 5.01
188 189 3.132863 GGTGCACCGAATACGTTCT 57.867 52.632 22.49 0.00 37.88 3.01
189 190 0.997196 GGTGCACCGAATACGTTCTC 59.003 55.000 22.49 0.00 37.88 2.87
190 191 0.638746 GTGCACCGAATACGTTCTCG 59.361 55.000 5.22 10.95 43.34 4.04
191 192 1.074319 TGCACCGAATACGTTCTCGC 61.074 55.000 12.12 2.01 41.18 5.03
192 193 1.908089 CACCGAATACGTTCTCGCG 59.092 57.895 0.00 0.00 41.18 5.87
193 194 1.226491 ACCGAATACGTTCTCGCGG 60.226 57.895 6.13 11.86 41.86 6.46
194 195 1.063006 CCGAATACGTTCTCGCGGA 59.937 57.895 6.13 0.00 39.82 5.54
195 196 0.317603 CCGAATACGTTCTCGCGGAT 60.318 55.000 6.13 0.00 39.82 4.18
196 197 1.043224 CGAATACGTTCTCGCGGATC 58.957 55.000 6.13 0.85 41.18 3.36
197 198 1.043224 GAATACGTTCTCGCGGATCG 58.957 55.000 19.48 19.48 41.36 3.69
198 199 0.317603 AATACGTTCTCGCGGATCGG 60.318 55.000 22.70 8.73 40.31 4.18
199 200 1.162181 ATACGTTCTCGCGGATCGGA 61.162 55.000 22.70 18.27 40.31 4.55
200 201 1.162181 TACGTTCTCGCGGATCGGAT 61.162 55.000 22.70 11.70 40.31 4.18
201 202 2.011349 CGTTCTCGCGGATCGGATG 61.011 63.158 6.13 0.00 39.05 3.51
202 203 1.661821 GTTCTCGCGGATCGGATGG 60.662 63.158 6.13 0.00 39.05 3.51
203 204 3.499929 TTCTCGCGGATCGGATGGC 62.500 63.158 6.13 0.00 39.05 4.40
204 205 4.284860 CTCGCGGATCGGATGGCA 62.285 66.667 6.13 0.00 39.05 4.92
205 206 4.585526 TCGCGGATCGGATGGCAC 62.586 66.667 6.13 0.00 39.05 5.01
206 207 4.889856 CGCGGATCGGATGGCACA 62.890 66.667 4.16 0.00 37.35 4.57
226 227 2.442643 GGGTGACCGATCGGGGTA 60.443 66.667 35.87 19.62 43.64 3.69
227 228 1.835712 GGGTGACCGATCGGGGTAT 60.836 63.158 35.87 17.05 43.64 2.73
228 229 1.664306 GGTGACCGATCGGGGTATC 59.336 63.158 35.87 24.41 41.40 2.24
229 230 1.664306 GTGACCGATCGGGGTATCC 59.336 63.158 35.87 17.82 41.40 2.59
239 240 2.913501 GGGTATCCCCGGTTGACC 59.086 66.667 0.00 1.78 42.41 4.02
240 241 2.749584 GGGTATCCCCGGTTGACCC 61.750 68.421 13.55 13.55 42.41 4.46
241 242 1.996748 GGTATCCCCGGTTGACCCA 60.997 63.158 0.00 0.00 0.00 4.51
242 243 1.222661 GTATCCCCGGTTGACCCAC 59.777 63.158 0.00 0.00 0.00 4.61
243 244 2.360767 TATCCCCGGTTGACCCACG 61.361 63.158 0.00 0.00 0.00 4.94
247 248 3.697747 CCGGTTGACCCACGCCTA 61.698 66.667 0.00 0.00 0.00 3.93
248 249 2.125673 CGGTTGACCCACGCCTAG 60.126 66.667 0.00 0.00 0.00 3.02
249 250 2.939261 CGGTTGACCCACGCCTAGT 61.939 63.158 0.00 0.00 0.00 2.57
250 251 1.597797 CGGTTGACCCACGCCTAGTA 61.598 60.000 0.00 0.00 0.00 1.82
251 252 0.108472 GGTTGACCCACGCCTAGTAC 60.108 60.000 0.00 0.00 0.00 2.73
252 253 0.108472 GTTGACCCACGCCTAGTACC 60.108 60.000 0.00 0.00 0.00 3.34
253 254 1.259840 TTGACCCACGCCTAGTACCC 61.260 60.000 0.00 0.00 0.00 3.69
254 255 2.757099 ACCCACGCCTAGTACCCG 60.757 66.667 0.00 0.00 0.00 5.28
255 256 4.217159 CCCACGCCTAGTACCCGC 62.217 72.222 0.00 0.00 0.00 6.13
256 257 3.145551 CCACGCCTAGTACCCGCT 61.146 66.667 0.00 0.00 0.00 5.52
257 258 1.825191 CCACGCCTAGTACCCGCTA 60.825 63.158 0.00 0.00 0.00 4.26
258 259 1.177256 CCACGCCTAGTACCCGCTAT 61.177 60.000 0.00 0.00 0.00 2.97
259 260 1.527034 CACGCCTAGTACCCGCTATA 58.473 55.000 0.00 0.00 0.00 1.31
260 261 2.089980 CACGCCTAGTACCCGCTATAT 58.910 52.381 0.00 0.00 0.00 0.86
261 262 2.097142 CACGCCTAGTACCCGCTATATC 59.903 54.545 0.00 0.00 0.00 1.63
262 263 1.329906 CGCCTAGTACCCGCTATATCG 59.670 57.143 0.00 0.00 0.00 2.92
263 264 2.363683 GCCTAGTACCCGCTATATCGT 58.636 52.381 0.00 0.00 0.00 3.73
264 265 2.097142 GCCTAGTACCCGCTATATCGTG 59.903 54.545 0.00 0.00 0.00 4.35
265 266 3.603532 CCTAGTACCCGCTATATCGTGA 58.396 50.000 0.00 0.00 0.00 4.35
266 267 4.197750 CCTAGTACCCGCTATATCGTGAT 58.802 47.826 0.00 0.00 0.00 3.06
267 268 4.035324 CCTAGTACCCGCTATATCGTGATG 59.965 50.000 0.00 0.00 0.00 3.07
268 269 2.753452 AGTACCCGCTATATCGTGATGG 59.247 50.000 0.00 0.00 0.00 3.51
269 270 0.246635 ACCCGCTATATCGTGATGGC 59.753 55.000 0.00 0.00 0.00 4.40
270 271 0.532573 CCCGCTATATCGTGATGGCT 59.467 55.000 6.21 0.00 0.00 4.75
271 272 1.749063 CCCGCTATATCGTGATGGCTA 59.251 52.381 6.21 0.00 0.00 3.93
272 273 2.223595 CCCGCTATATCGTGATGGCTAG 60.224 54.545 6.21 0.00 0.00 3.42
273 274 2.683362 CCGCTATATCGTGATGGCTAGA 59.317 50.000 0.00 0.00 0.00 2.43
274 275 3.487711 CCGCTATATCGTGATGGCTAGAC 60.488 52.174 0.00 0.00 0.00 2.59
275 276 3.686128 GCTATATCGTGATGGCTAGACG 58.314 50.000 0.00 0.00 34.38 4.18
276 277 3.374367 GCTATATCGTGATGGCTAGACGA 59.626 47.826 9.13 9.13 45.42 4.20
279 280 1.675552 TCGTGATGGCTAGACGATGA 58.324 50.000 3.38 0.00 37.21 2.92
280 281 1.604278 TCGTGATGGCTAGACGATGAG 59.396 52.381 3.38 0.00 37.21 2.90
281 282 1.335415 CGTGATGGCTAGACGATGAGG 60.335 57.143 0.00 0.00 35.05 3.86
282 283 0.676184 TGATGGCTAGACGATGAGGC 59.324 55.000 0.00 0.00 38.67 4.70
283 284 0.965439 GATGGCTAGACGATGAGGCT 59.035 55.000 0.00 0.00 43.68 4.58
284 285 1.342819 GATGGCTAGACGATGAGGCTT 59.657 52.381 0.00 0.00 40.13 4.35
285 286 1.195115 TGGCTAGACGATGAGGCTTT 58.805 50.000 0.00 0.00 40.13 3.51
286 287 2.384828 TGGCTAGACGATGAGGCTTTA 58.615 47.619 0.00 0.00 40.13 1.85
287 288 2.764010 TGGCTAGACGATGAGGCTTTAA 59.236 45.455 0.00 0.00 40.13 1.52
288 289 3.388024 TGGCTAGACGATGAGGCTTTAAT 59.612 43.478 0.00 0.00 40.13 1.40
289 290 3.991121 GGCTAGACGATGAGGCTTTAATC 59.009 47.826 0.00 0.00 40.13 1.75
290 291 4.501571 GGCTAGACGATGAGGCTTTAATCA 60.502 45.833 0.00 0.00 40.13 2.57
291 292 5.233988 GCTAGACGATGAGGCTTTAATCAT 58.766 41.667 0.00 0.00 40.13 2.45
292 293 5.347364 GCTAGACGATGAGGCTTTAATCATC 59.653 44.000 6.69 6.69 45.44 2.92
293 294 5.543507 AGACGATGAGGCTTTAATCATCT 57.456 39.130 12.62 5.64 46.29 2.90
294 295 5.537188 AGACGATGAGGCTTTAATCATCTC 58.463 41.667 12.62 9.77 46.29 2.75
295 296 5.069648 AGACGATGAGGCTTTAATCATCTCA 59.930 40.000 12.62 7.60 46.29 3.27
296 297 5.053145 ACGATGAGGCTTTAATCATCTCAC 58.947 41.667 12.62 3.53 46.29 3.51
297 298 5.052481 CGATGAGGCTTTAATCATCTCACA 58.948 41.667 12.62 0.00 46.29 3.58
298 299 5.525012 CGATGAGGCTTTAATCATCTCACAA 59.475 40.000 12.62 0.00 46.29 3.33
299 300 6.292757 CGATGAGGCTTTAATCATCTCACAAG 60.293 42.308 12.62 0.00 46.29 3.16
300 301 5.188434 TGAGGCTTTAATCATCTCACAAGG 58.812 41.667 0.00 0.00 30.58 3.61
301 302 5.045651 TGAGGCTTTAATCATCTCACAAGGA 60.046 40.000 0.00 0.00 30.58 3.36
302 303 5.819991 AGGCTTTAATCATCTCACAAGGAA 58.180 37.500 0.00 0.00 0.00 3.36
303 304 6.248433 AGGCTTTAATCATCTCACAAGGAAA 58.752 36.000 0.00 0.00 0.00 3.13
304 305 6.151817 AGGCTTTAATCATCTCACAAGGAAAC 59.848 38.462 0.00 0.00 0.00 2.78
305 306 6.071952 GGCTTTAATCATCTCACAAGGAAACA 60.072 38.462 0.00 0.00 0.00 2.83
306 307 7.363268 GGCTTTAATCATCTCACAAGGAAACAT 60.363 37.037 0.00 0.00 0.00 2.71
307 308 8.677300 GCTTTAATCATCTCACAAGGAAACATA 58.323 33.333 0.00 0.00 0.00 2.29
348 349 2.100989 AGCTAGACCCGTTACAAGAGG 58.899 52.381 0.00 0.00 0.00 3.69
380 381 5.871396 ACTCCGTATAACCAAGTCATCAT 57.129 39.130 0.00 0.00 0.00 2.45
453 454 3.103738 CGCAGAAGCATTTTGATAGCAC 58.896 45.455 0.00 0.00 42.27 4.40
481 482 2.014068 GCGGAGAAACCAGCATAGCTT 61.014 52.381 0.00 0.00 36.40 3.74
482 483 1.936547 CGGAGAAACCAGCATAGCTTC 59.063 52.381 0.00 0.00 36.40 3.86
483 484 2.293170 GGAGAAACCAGCATAGCTTCC 58.707 52.381 0.00 0.00 36.40 3.46
484 485 2.092699 GGAGAAACCAGCATAGCTTCCT 60.093 50.000 0.00 0.00 36.40 3.36
485 486 3.134804 GGAGAAACCAGCATAGCTTCCTA 59.865 47.826 0.00 0.00 36.40 2.94
486 487 4.202409 GGAGAAACCAGCATAGCTTCCTAT 60.202 45.833 0.00 0.00 36.40 2.57
487 488 5.372373 GAGAAACCAGCATAGCTTCCTATT 58.628 41.667 0.00 0.00 36.40 1.73
488 489 5.760131 AGAAACCAGCATAGCTTCCTATTT 58.240 37.500 0.00 0.00 36.40 1.40
489 490 5.591877 AGAAACCAGCATAGCTTCCTATTTG 59.408 40.000 0.00 0.00 36.40 2.32
490 491 3.825328 ACCAGCATAGCTTCCTATTTGG 58.175 45.455 0.00 8.41 39.67 3.28
491 492 3.459598 ACCAGCATAGCTTCCTATTTGGA 59.540 43.478 13.66 0.00 44.51 3.53
492 493 4.105377 ACCAGCATAGCTTCCTATTTGGAT 59.895 41.667 13.66 2.10 45.68 3.41
493 494 4.699257 CCAGCATAGCTTCCTATTTGGATC 59.301 45.833 0.00 0.00 45.68 3.36
494 495 5.311265 CAGCATAGCTTCCTATTTGGATCA 58.689 41.667 0.00 0.00 45.68 2.92
495 496 5.944599 CAGCATAGCTTCCTATTTGGATCAT 59.055 40.000 0.00 0.00 45.68 2.45
496 497 5.944599 AGCATAGCTTCCTATTTGGATCATG 59.055 40.000 0.00 0.00 45.68 3.07
497 498 5.125097 GCATAGCTTCCTATTTGGATCATGG 59.875 44.000 0.00 0.00 45.68 3.66
498 499 4.109877 AGCTTCCTATTTGGATCATGGG 57.890 45.455 0.00 0.00 45.68 4.00
499 500 3.160269 GCTTCCTATTTGGATCATGGGG 58.840 50.000 0.00 0.00 45.68 4.96
500 501 3.437052 GCTTCCTATTTGGATCATGGGGT 60.437 47.826 0.00 0.00 45.68 4.95
501 502 4.808042 CTTCCTATTTGGATCATGGGGTT 58.192 43.478 0.00 0.00 45.68 4.11
502 503 5.692781 GCTTCCTATTTGGATCATGGGGTTA 60.693 44.000 0.00 0.00 45.68 2.85
503 504 5.582950 TCCTATTTGGATCATGGGGTTAG 57.417 43.478 0.00 0.00 40.56 2.34
504 505 5.231552 TCCTATTTGGATCATGGGGTTAGA 58.768 41.667 0.00 0.00 40.56 2.10
505 506 5.310594 TCCTATTTGGATCATGGGGTTAGAG 59.689 44.000 0.00 0.00 40.56 2.43
506 507 3.297134 TTTGGATCATGGGGTTAGAGC 57.703 47.619 0.00 0.00 0.00 4.09
507 508 2.196742 TGGATCATGGGGTTAGAGCT 57.803 50.000 0.00 0.00 0.00 4.09
508 509 3.344535 TGGATCATGGGGTTAGAGCTA 57.655 47.619 0.00 0.00 0.00 3.32
509 510 3.242867 TGGATCATGGGGTTAGAGCTAG 58.757 50.000 0.00 0.00 0.00 3.42
510 511 3.243724 GGATCATGGGGTTAGAGCTAGT 58.756 50.000 0.00 0.00 0.00 2.57
511 512 3.648545 GGATCATGGGGTTAGAGCTAGTT 59.351 47.826 0.00 0.00 0.00 2.24
512 513 4.103311 GGATCATGGGGTTAGAGCTAGTTT 59.897 45.833 0.00 0.00 0.00 2.66
513 514 4.487714 TCATGGGGTTAGAGCTAGTTTG 57.512 45.455 0.00 0.00 0.00 2.93
514 515 3.199946 TCATGGGGTTAGAGCTAGTTTGG 59.800 47.826 0.00 0.00 0.00 3.28
515 516 2.910544 TGGGGTTAGAGCTAGTTTGGA 58.089 47.619 0.00 0.00 0.00 3.53
516 517 3.460825 TGGGGTTAGAGCTAGTTTGGAT 58.539 45.455 0.00 0.00 0.00 3.41
517 518 3.850173 TGGGGTTAGAGCTAGTTTGGATT 59.150 43.478 0.00 0.00 0.00 3.01
518 519 5.034200 TGGGGTTAGAGCTAGTTTGGATTA 58.966 41.667 0.00 0.00 0.00 1.75
519 520 5.130477 TGGGGTTAGAGCTAGTTTGGATTAG 59.870 44.000 0.00 0.00 0.00 1.73
520 521 5.130643 GGGGTTAGAGCTAGTTTGGATTAGT 59.869 44.000 0.00 0.00 0.00 2.24
521 522 6.352823 GGGGTTAGAGCTAGTTTGGATTAGTT 60.353 42.308 0.00 0.00 0.00 2.24
522 523 7.110810 GGGTTAGAGCTAGTTTGGATTAGTTT 58.889 38.462 0.00 0.00 0.00 2.66
523 524 7.065923 GGGTTAGAGCTAGTTTGGATTAGTTTG 59.934 40.741 0.00 0.00 0.00 2.93
524 525 7.065923 GGTTAGAGCTAGTTTGGATTAGTTTGG 59.934 40.741 0.00 0.00 0.00 3.28
525 526 6.374417 AGAGCTAGTTTGGATTAGTTTGGA 57.626 37.500 0.00 0.00 0.00 3.53
526 527 6.410540 AGAGCTAGTTTGGATTAGTTTGGAG 58.589 40.000 0.00 0.00 0.00 3.86
527 528 4.944317 AGCTAGTTTGGATTAGTTTGGAGC 59.056 41.667 0.00 0.00 0.00 4.70
528 529 4.944317 GCTAGTTTGGATTAGTTTGGAGCT 59.056 41.667 0.00 0.00 0.00 4.09
529 530 5.065346 GCTAGTTTGGATTAGTTTGGAGCTC 59.935 44.000 4.71 4.71 0.00 4.09
530 531 4.985538 AGTTTGGATTAGTTTGGAGCTCA 58.014 39.130 17.19 0.00 0.00 4.26
531 532 5.385198 AGTTTGGATTAGTTTGGAGCTCAA 58.615 37.500 17.19 0.00 0.00 3.02
532 533 5.833131 AGTTTGGATTAGTTTGGAGCTCAAA 59.167 36.000 17.19 7.99 42.50 2.69
533 534 6.494835 AGTTTGGATTAGTTTGGAGCTCAAAT 59.505 34.615 17.19 3.92 45.79 2.32
534 535 7.669722 AGTTTGGATTAGTTTGGAGCTCAAATA 59.330 33.333 17.19 2.86 45.79 1.40
535 536 8.303876 GTTTGGATTAGTTTGGAGCTCAAATAA 58.696 33.333 17.19 12.05 45.79 1.40
536 537 7.391148 TGGATTAGTTTGGAGCTCAAATAAC 57.609 36.000 17.19 12.72 45.79 1.89
537 538 6.377146 TGGATTAGTTTGGAGCTCAAATAACC 59.623 38.462 17.19 14.31 45.79 2.85
538 539 6.183360 GGATTAGTTTGGAGCTCAAATAACCC 60.183 42.308 17.19 8.71 45.79 4.11
539 540 4.112634 AGTTTGGAGCTCAAATAACCCA 57.887 40.909 17.19 0.00 45.79 4.51
540 541 4.479158 AGTTTGGAGCTCAAATAACCCAA 58.521 39.130 17.19 5.56 45.79 4.12
541 542 4.898861 AGTTTGGAGCTCAAATAACCCAAA 59.101 37.500 17.19 11.68 45.79 3.28
542 543 5.365314 AGTTTGGAGCTCAAATAACCCAAAA 59.635 36.000 17.19 0.00 45.79 2.44
543 544 5.467035 TTGGAGCTCAAATAACCCAAAAG 57.533 39.130 17.19 0.00 31.52 2.27
544 545 4.479158 TGGAGCTCAAATAACCCAAAAGT 58.521 39.130 17.19 0.00 0.00 2.66
545 546 5.636123 TGGAGCTCAAATAACCCAAAAGTA 58.364 37.500 17.19 0.00 0.00 2.24
546 547 6.252995 TGGAGCTCAAATAACCCAAAAGTAT 58.747 36.000 17.19 0.00 0.00 2.12
547 548 6.723977 TGGAGCTCAAATAACCCAAAAGTATT 59.276 34.615 17.19 0.00 0.00 1.89
548 549 7.093945 TGGAGCTCAAATAACCCAAAAGTATTC 60.094 37.037 17.19 0.00 0.00 1.75
549 550 7.093945 GGAGCTCAAATAACCCAAAAGTATTCA 60.094 37.037 17.19 0.00 0.00 2.57
550 551 8.189119 AGCTCAAATAACCCAAAAGTATTCAA 57.811 30.769 0.00 0.00 0.00 2.69
551 552 8.646900 AGCTCAAATAACCCAAAAGTATTCAAA 58.353 29.630 0.00 0.00 0.00 2.69
552 553 8.708742 GCTCAAATAACCCAAAAGTATTCAAAC 58.291 33.333 0.00 0.00 0.00 2.93
553 554 9.757227 CTCAAATAACCCAAAAGTATTCAAACA 57.243 29.630 0.00 0.00 0.00 2.83
554 555 9.757227 TCAAATAACCCAAAAGTATTCAAACAG 57.243 29.630 0.00 0.00 0.00 3.16
555 556 8.987890 CAAATAACCCAAAAGTATTCAAACAGG 58.012 33.333 0.00 0.00 0.00 4.00
556 557 5.545063 AACCCAAAAGTATTCAAACAGGG 57.455 39.130 0.00 0.00 39.66 4.45
557 558 4.810345 ACCCAAAAGTATTCAAACAGGGA 58.190 39.130 0.00 0.00 37.23 4.20
558 559 4.832823 ACCCAAAAGTATTCAAACAGGGAG 59.167 41.667 0.00 0.00 37.23 4.30
559 560 4.220602 CCCAAAAGTATTCAAACAGGGAGG 59.779 45.833 0.00 0.00 35.81 4.30
560 561 4.220602 CCAAAAGTATTCAAACAGGGAGGG 59.779 45.833 0.00 0.00 0.00 4.30
561 562 4.741928 AAAGTATTCAAACAGGGAGGGT 57.258 40.909 0.00 0.00 0.00 4.34
562 563 4.741928 AAGTATTCAAACAGGGAGGGTT 57.258 40.909 0.00 0.00 0.00 4.11
563 564 5.853572 AAGTATTCAAACAGGGAGGGTTA 57.146 39.130 0.00 0.00 0.00 2.85
564 565 5.437191 AGTATTCAAACAGGGAGGGTTAG 57.563 43.478 0.00 0.00 0.00 2.34
565 566 5.098663 AGTATTCAAACAGGGAGGGTTAGA 58.901 41.667 0.00 0.00 0.00 2.10
566 567 5.550403 AGTATTCAAACAGGGAGGGTTAGAA 59.450 40.000 0.00 0.00 0.00 2.10
567 568 5.536497 ATTCAAACAGGGAGGGTTAGAAT 57.464 39.130 0.00 0.00 0.00 2.40
568 569 4.301072 TCAAACAGGGAGGGTTAGAATG 57.699 45.455 0.00 0.00 0.00 2.67
569 570 3.010138 TCAAACAGGGAGGGTTAGAATGG 59.990 47.826 0.00 0.00 0.00 3.16
570 571 1.596496 ACAGGGAGGGTTAGAATGGG 58.404 55.000 0.00 0.00 0.00 4.00
571 572 1.203570 ACAGGGAGGGTTAGAATGGGT 60.204 52.381 0.00 0.00 0.00 4.51
572 573 1.923148 CAGGGAGGGTTAGAATGGGTT 59.077 52.381 0.00 0.00 0.00 4.11
573 574 3.120108 CAGGGAGGGTTAGAATGGGTTA 58.880 50.000 0.00 0.00 0.00 2.85
574 575 3.136626 CAGGGAGGGTTAGAATGGGTTAG 59.863 52.174 0.00 0.00 0.00 2.34
575 576 3.120898 GGGAGGGTTAGAATGGGTTAGT 58.879 50.000 0.00 0.00 0.00 2.24
576 577 3.526430 GGGAGGGTTAGAATGGGTTAGTT 59.474 47.826 0.00 0.00 0.00 2.24
577 578 4.017775 GGGAGGGTTAGAATGGGTTAGTTT 60.018 45.833 0.00 0.00 0.00 2.66
578 579 5.191426 GGAGGGTTAGAATGGGTTAGTTTC 58.809 45.833 0.00 0.00 0.00 2.78
579 580 5.280830 GGAGGGTTAGAATGGGTTAGTTTCA 60.281 44.000 0.00 0.00 0.00 2.69
580 581 6.402981 AGGGTTAGAATGGGTTAGTTTCAT 57.597 37.500 0.00 0.00 0.00 2.57
581 582 6.424032 AGGGTTAGAATGGGTTAGTTTCATC 58.576 40.000 0.00 0.00 0.00 2.92
582 583 6.217693 AGGGTTAGAATGGGTTAGTTTCATCT 59.782 38.462 0.00 0.00 0.00 2.90
583 584 7.404980 AGGGTTAGAATGGGTTAGTTTCATCTA 59.595 37.037 0.00 0.00 0.00 1.98
584 585 8.050930 GGGTTAGAATGGGTTAGTTTCATCTAA 58.949 37.037 0.00 0.00 0.00 2.10
585 586 9.628500 GGTTAGAATGGGTTAGTTTCATCTAAT 57.372 33.333 0.00 0.00 33.39 1.73
587 588 9.847224 TTAGAATGGGTTAGTTTCATCTAATCC 57.153 33.333 8.34 8.34 46.00 3.01
594 595 9.274206 GGGTTAGTTTCATCTAATCCAACTATC 57.726 37.037 9.91 0.00 45.46 2.08
595 596 9.274206 GGTTAGTTTCATCTAATCCAACTATCC 57.726 37.037 0.00 0.00 34.77 2.59
598 599 8.324191 AGTTTCATCTAATCCAACTATCCTGA 57.676 34.615 0.00 0.00 0.00 3.86
599 600 8.943085 AGTTTCATCTAATCCAACTATCCTGAT 58.057 33.333 0.00 0.00 0.00 2.90
600 601 8.997323 GTTTCATCTAATCCAACTATCCTGATG 58.003 37.037 0.00 0.00 0.00 3.07
601 602 7.250032 TCATCTAATCCAACTATCCTGATGG 57.750 40.000 0.00 0.00 32.33 3.51
603 604 6.924913 TCTAATCCAACTATCCTGATGGAG 57.075 41.667 0.00 0.00 46.91 3.86
604 605 6.624297 TCTAATCCAACTATCCTGATGGAGA 58.376 40.000 0.00 0.00 46.91 3.71
610 611 2.607499 CTATCCTGATGGAGAGGTGCT 58.393 52.381 0.00 0.00 45.37 4.40
611 612 1.890552 ATCCTGATGGAGAGGTGCTT 58.109 50.000 0.00 0.00 46.91 3.91
612 613 2.550277 TCCTGATGGAGAGGTGCTTA 57.450 50.000 0.00 0.00 37.46 3.09
613 614 3.051940 TCCTGATGGAGAGGTGCTTAT 57.948 47.619 0.00 0.00 37.46 1.73
614 615 3.387962 TCCTGATGGAGAGGTGCTTATT 58.612 45.455 0.00 0.00 37.46 1.40
615 616 3.782523 TCCTGATGGAGAGGTGCTTATTT 59.217 43.478 0.00 0.00 37.46 1.40
616 617 3.881688 CCTGATGGAGAGGTGCTTATTTG 59.118 47.826 0.00 0.00 34.57 2.32
617 618 4.384537 CCTGATGGAGAGGTGCTTATTTGA 60.385 45.833 0.00 0.00 34.57 2.69
618 619 4.774124 TGATGGAGAGGTGCTTATTTGAG 58.226 43.478 0.00 0.00 0.00 3.02
619 620 4.225942 TGATGGAGAGGTGCTTATTTGAGT 59.774 41.667 0.00 0.00 0.00 3.41
620 621 4.640771 TGGAGAGGTGCTTATTTGAGTT 57.359 40.909 0.00 0.00 0.00 3.01
621 622 5.755409 TGGAGAGGTGCTTATTTGAGTTA 57.245 39.130 0.00 0.00 0.00 2.24
622 623 5.734720 TGGAGAGGTGCTTATTTGAGTTAG 58.265 41.667 0.00 0.00 0.00 2.34
623 624 5.483937 TGGAGAGGTGCTTATTTGAGTTAGA 59.516 40.000 0.00 0.00 0.00 2.10
624 625 6.045955 GGAGAGGTGCTTATTTGAGTTAGAG 58.954 44.000 0.00 0.00 0.00 2.43
625 626 6.351456 GGAGAGGTGCTTATTTGAGTTAGAGT 60.351 42.308 0.00 0.00 0.00 3.24
626 627 6.402222 AGAGGTGCTTATTTGAGTTAGAGTG 58.598 40.000 0.00 0.00 0.00 3.51
627 628 5.491982 AGGTGCTTATTTGAGTTAGAGTGG 58.508 41.667 0.00 0.00 0.00 4.00
628 629 4.636206 GGTGCTTATTTGAGTTAGAGTGGG 59.364 45.833 0.00 0.00 0.00 4.61
629 630 5.246307 GTGCTTATTTGAGTTAGAGTGGGT 58.754 41.667 0.00 0.00 0.00 4.51
630 631 5.705905 GTGCTTATTTGAGTTAGAGTGGGTT 59.294 40.000 0.00 0.00 0.00 4.11
631 632 6.877322 GTGCTTATTTGAGTTAGAGTGGGTTA 59.123 38.462 0.00 0.00 0.00 2.85
632 633 7.064728 GTGCTTATTTGAGTTAGAGTGGGTTAG 59.935 40.741 0.00 0.00 0.00 2.34
633 634 7.038587 TGCTTATTTGAGTTAGAGTGGGTTAGA 60.039 37.037 0.00 0.00 0.00 2.10
634 635 7.822822 GCTTATTTGAGTTAGAGTGGGTTAGAA 59.177 37.037 0.00 0.00 0.00 2.10
635 636 9.720769 CTTATTTGAGTTAGAGTGGGTTAGAAA 57.279 33.333 0.00 0.00 0.00 2.52
640 641 9.498176 TTGAGTTAGAGTGGGTTAGAAAATAAC 57.502 33.333 0.00 0.00 0.00 1.89
641 642 8.877195 TGAGTTAGAGTGGGTTAGAAAATAACT 58.123 33.333 0.00 0.00 34.57 2.24
642 643 9.368674 GAGTTAGAGTGGGTTAGAAAATAACTC 57.631 37.037 0.00 0.00 39.27 3.01
643 644 9.102453 AGTTAGAGTGGGTTAGAAAATAACTCT 57.898 33.333 7.50 7.50 43.79 3.24
671 672 8.690680 CTCTAACAGTGTTAGAGTATCCAAAC 57.309 38.462 40.77 0.00 41.73 2.93
672 673 8.185506 TCTAACAGTGTTAGAGTATCCAAACA 57.814 34.615 32.50 13.19 38.63 2.83
673 674 8.304596 TCTAACAGTGTTAGAGTATCCAAACAG 58.695 37.037 32.50 12.53 40.68 3.16
674 675 5.794894 ACAGTGTTAGAGTATCCAAACAGG 58.205 41.667 0.00 0.00 40.68 4.00
739 740 0.915364 GTGGCAGGAGGAAGGATTCT 59.085 55.000 0.00 0.00 46.56 2.40
740 741 0.914644 TGGCAGGAGGAAGGATTCTG 59.085 55.000 0.00 0.00 46.56 3.02
741 742 0.915364 GGCAGGAGGAAGGATTCTGT 59.085 55.000 0.00 0.00 46.56 3.41
742 743 1.134250 GGCAGGAGGAAGGATTCTGTC 60.134 57.143 0.00 0.00 46.56 3.51
750 751 3.093278 GGATTCTGTCCGCGCTTG 58.907 61.111 5.56 0.00 37.23 4.01
832 849 0.588252 CCGCCGCTGAATATTCCTTG 59.412 55.000 12.90 4.71 0.00 3.61
852 869 0.031314 AGTCGCTGTATCGCTCCATG 59.969 55.000 0.00 0.00 0.00 3.66
854 871 0.030773 TCGCTGTATCGCTCCATGAC 59.969 55.000 0.00 0.00 0.00 3.06
930 948 2.125350 CTTCCTCCCTGCTCACGC 60.125 66.667 0.00 0.00 0.00 5.34
931 949 3.997064 CTTCCTCCCTGCTCACGCG 62.997 68.421 3.53 3.53 39.65 6.01
1043 1072 3.492102 ATGTACAGACCACACAAGCTT 57.508 42.857 0.33 0.00 0.00 3.74
1086 1115 2.472816 ACGACAAGCAAAGGCAAATTG 58.527 42.857 0.00 0.00 44.61 2.32
1090 1119 4.568956 GACAAGCAAAGGCAAATTGGTAT 58.431 39.130 0.00 0.00 44.61 2.73
1091 1120 4.317488 ACAAGCAAAGGCAAATTGGTATG 58.683 39.130 0.00 6.65 44.61 2.39
1092 1121 4.202346 ACAAGCAAAGGCAAATTGGTATGT 60.202 37.500 0.00 7.10 44.61 2.29
1095 1124 4.772100 AGCAAAGGCAAATTGGTATGTACT 59.228 37.500 0.00 0.00 44.61 2.73
1096 1125 5.949354 AGCAAAGGCAAATTGGTATGTACTA 59.051 36.000 0.00 0.00 44.61 1.82
1098 1127 6.265577 CAAAGGCAAATTGGTATGTACTAGC 58.734 40.000 0.00 0.00 0.00 3.42
1099 1128 4.461198 AGGCAAATTGGTATGTACTAGCC 58.539 43.478 0.00 0.00 38.65 3.93
1101 1130 3.250040 GCAAATTGGTATGTACTAGCCCG 59.750 47.826 0.00 0.00 0.00 6.13
1102 1131 4.448210 CAAATTGGTATGTACTAGCCCGT 58.552 43.478 0.00 0.00 0.00 5.28
1103 1132 3.746045 ATTGGTATGTACTAGCCCGTG 57.254 47.619 0.00 0.00 0.00 4.94
1104 1133 2.440517 TGGTATGTACTAGCCCGTGA 57.559 50.000 0.00 0.00 0.00 4.35
1105 1134 2.026641 TGGTATGTACTAGCCCGTGAC 58.973 52.381 0.00 0.00 0.00 3.67
1388 1501 2.996168 AAGCTGACCGCAAGAACGCT 62.996 55.000 0.00 0.00 42.61 5.07
1530 2406 4.247258 CACATAACCGCCAAGTAAGTACA 58.753 43.478 0.00 0.00 0.00 2.90
1544 2423 7.362662 CAAGTAAGTACAAGCACAACATGATT 58.637 34.615 0.00 0.00 37.42 2.57
1599 2483 2.482296 ATTGCTTGCTTGCTCACCGC 62.482 55.000 3.47 0.00 39.77 5.68
1643 2537 1.648467 GAAGATGACGGCAAGCCCAC 61.648 60.000 0.00 0.46 0.00 4.61
1728 2622 0.796927 GGCAAAGCTTGTACGAGACC 59.203 55.000 14.70 2.98 0.00 3.85
1781 2675 0.909623 CTCCCCGTTGTTCCCATAGT 59.090 55.000 0.00 0.00 0.00 2.12
1827 2727 2.208349 AGGACAGGGGACAAGCCT 59.792 61.111 0.00 0.00 36.66 4.58
1834 2737 2.053244 CAGGGGACAAGCCTATCTGAT 58.947 52.381 0.00 0.00 36.66 2.90
1853 2756 4.136796 TGATACAACAAGAGCAAAGCTGT 58.863 39.130 0.00 0.00 39.88 4.40
1859 2762 2.551459 ACAAGAGCAAAGCTGTAGCAAG 59.449 45.455 6.65 0.00 45.16 4.01
1943 2846 8.634444 ACAAAGTAAAGTGTGGCATGTAAATAA 58.366 29.630 0.00 0.00 0.00 1.40
1950 2853 9.691362 AAAGTGTGGCATGTAAATAAAACTAAG 57.309 29.630 0.00 0.00 0.00 2.18
1980 3103 4.202781 ACAAGTATTTTGGAATGGAGGGGT 60.203 41.667 0.00 0.00 0.00 4.95
2221 6936 2.134789 AAGGAATGGTCAGGTCATGC 57.865 50.000 0.00 0.00 0.00 4.06
2364 7080 4.332819 GCTTACCGTAGCATCTTCAATGTT 59.667 41.667 0.00 0.00 40.89 2.71
2380 7096 6.028146 TCAATGTTGGATTTTGGACAGATG 57.972 37.500 0.00 0.00 0.00 2.90
2390 7106 4.982241 TTTGGACAGATGGTCTCTTCTT 57.018 40.909 0.00 0.00 46.16 2.52
2392 7108 5.667539 TTGGACAGATGGTCTCTTCTTAG 57.332 43.478 0.00 0.00 46.16 2.18
2400 7116 4.008074 TGGTCTCTTCTTAGCAGTTTGG 57.992 45.455 0.00 0.00 0.00 3.28
2409 7125 6.545666 TCTTCTTAGCAGTTTGGTCAATGAAA 59.454 34.615 0.00 0.00 0.00 2.69
2412 7128 4.942761 AGCAGTTTGGTCAATGAAATGT 57.057 36.364 0.00 0.00 0.00 2.71
2414 7130 6.403866 AGCAGTTTGGTCAATGAAATGTAA 57.596 33.333 0.00 0.00 0.00 2.41
2422 7138 6.009589 TGGTCAATGAAATGTAACCACTCAT 58.990 36.000 0.00 0.00 32.08 2.90
2427 7143 3.818210 TGAAATGTAACCACTCATGCGTT 59.182 39.130 0.00 0.00 0.00 4.84
2446 7162 4.604976 CGTTAACGGATATTCTCGGTTCT 58.395 43.478 20.24 0.00 43.85 3.01
2454 7170 4.439700 GGATATTCTCGGTTCTGTCAACGA 60.440 45.833 0.00 0.00 0.00 3.85
2477 7193 2.494530 GGCGGTTTGGGTTGCTTGA 61.495 57.895 0.00 0.00 0.00 3.02
2502 7218 1.343789 CATGTGCATGGTTTTGGGACA 59.656 47.619 4.35 0.00 37.28 4.02
2509 7225 3.681313 GCATGGTTTTGGGACAGTTGTTT 60.681 43.478 0.00 0.00 42.39 2.83
2522 7238 5.164606 ACAGTTGTTTCGACATTTGTACC 57.835 39.130 0.00 0.00 0.00 3.34
2545 7261 4.332543 CGCAATGAAACTTATAGCCACTCA 59.667 41.667 0.00 0.00 0.00 3.41
2558 7274 1.881973 GCCACTCATGTGAGCTTTTGA 59.118 47.619 9.84 0.00 46.55 2.69
2566 7282 1.343142 TGTGAGCTTTTGAGACGGCTA 59.657 47.619 0.00 0.00 35.01 3.93
2594 7310 2.346284 TTTGCACCGCCCCAACTACT 62.346 55.000 0.00 0.00 0.00 2.57
2620 7336 1.355720 AGGGTGATTCCTCTGGGTTTG 59.644 52.381 0.00 0.00 36.25 2.93
2735 7452 3.815401 CACTACTGCCTGCTTTTACTGTT 59.185 43.478 0.00 0.00 0.00 3.16
2741 7458 2.623416 GCCTGCTTTTACTGTTTGGAGT 59.377 45.455 0.00 0.00 0.00 3.85
2742 7459 3.550842 GCCTGCTTTTACTGTTTGGAGTG 60.551 47.826 0.00 0.00 0.00 3.51
2764 7481 6.019779 TGGTTGTACCATTTATTCAAGTGC 57.980 37.500 0.00 0.00 44.79 4.40
2776 7493 3.475566 TTCAAGTGCTTGTACTGCTCT 57.524 42.857 11.17 10.28 41.16 4.09
2784 7501 4.150804 GTGCTTGTACTGCTCTAGTGTTTC 59.849 45.833 11.48 0.00 40.65 2.78
2798 7515 3.743521 AGTGTTTCTCTGCAGCATAACA 58.256 40.909 9.47 14.86 0.00 2.41
2799 7516 4.330250 AGTGTTTCTCTGCAGCATAACAT 58.670 39.130 21.72 12.86 0.00 2.71
2852 7573 0.621280 CTTCCCCAATGGCCCCAATT 60.621 55.000 0.00 0.00 0.00 2.32
2875 7596 1.428912 TCTGAGCAAGTTTTCCCCCAT 59.571 47.619 0.00 0.00 0.00 4.00
2913 7634 8.589338 TCTTGTAGTTTGCTTTCTCTCTATTCT 58.411 33.333 0.00 0.00 0.00 2.40
2917 7638 7.014988 AGTTTGCTTTCTCTCTATTCTTCCT 57.985 36.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.970859 ACATTCCTCGAGATAAAAGAAATGAT 57.029 30.769 15.71 0.00 0.00 2.45
16 17 8.792830 AACATTCCTCGAGATAAAAGAAATGA 57.207 30.769 15.71 0.00 0.00 2.57
17 18 8.125448 GGAACATTCCTCGAGATAAAAGAAATG 58.875 37.037 15.71 11.66 44.11 2.32
18 19 7.011482 CGGAACATTCCTCGAGATAAAAGAAAT 59.989 37.037 15.71 0.00 45.33 2.17
19 20 6.312918 CGGAACATTCCTCGAGATAAAAGAAA 59.687 38.462 15.71 0.00 45.33 2.52
20 21 5.810587 CGGAACATTCCTCGAGATAAAAGAA 59.189 40.000 15.71 8.02 45.33 2.52
21 22 5.105473 ACGGAACATTCCTCGAGATAAAAGA 60.105 40.000 15.71 0.00 45.33 2.52
22 23 5.109903 ACGGAACATTCCTCGAGATAAAAG 58.890 41.667 15.71 5.04 45.33 2.27
23 24 5.080969 ACGGAACATTCCTCGAGATAAAA 57.919 39.130 15.71 2.99 45.33 1.52
24 25 4.730949 ACGGAACATTCCTCGAGATAAA 57.269 40.909 15.71 5.65 45.33 1.40
25 26 6.401047 AATACGGAACATTCCTCGAGATAA 57.599 37.500 15.71 8.36 45.33 1.75
26 27 6.401047 AAATACGGAACATTCCTCGAGATA 57.599 37.500 15.71 0.84 45.33 1.98
27 28 4.939052 AATACGGAACATTCCTCGAGAT 57.061 40.909 15.71 0.00 45.33 2.75
28 29 4.730949 AAATACGGAACATTCCTCGAGA 57.269 40.909 15.71 0.00 45.33 4.04
29 30 4.868171 TCAAAATACGGAACATTCCTCGAG 59.132 41.667 5.13 5.13 45.33 4.04
30 31 4.823157 TCAAAATACGGAACATTCCTCGA 58.177 39.130 8.97 0.00 45.33 4.04
31 32 5.734855 ATCAAAATACGGAACATTCCTCG 57.265 39.130 8.97 0.00 45.33 4.63
32 33 7.535139 TCAAATCAAAATACGGAACATTCCTC 58.465 34.615 8.97 0.00 45.33 3.71
33 34 7.461182 TCAAATCAAAATACGGAACATTCCT 57.539 32.000 8.97 0.00 45.33 3.36
34 35 8.527567 TTTCAAATCAAAATACGGAACATTCC 57.472 30.769 0.09 0.09 44.05 3.01
64 65 9.631257 TCACTCAACATCAATATTTGGTATCAT 57.369 29.630 0.00 0.00 0.00 2.45
65 66 9.460019 TTCACTCAACATCAATATTTGGTATCA 57.540 29.630 0.00 0.00 0.00 2.15
68 69 9.241919 ACATTCACTCAACATCAATATTTGGTA 57.758 29.630 0.00 0.00 0.00 3.25
69 70 8.125978 ACATTCACTCAACATCAATATTTGGT 57.874 30.769 0.00 0.00 0.00 3.67
70 71 8.991243 AACATTCACTCAACATCAATATTTGG 57.009 30.769 0.00 0.00 0.00 3.28
71 72 9.850628 AGAACATTCACTCAACATCAATATTTG 57.149 29.630 0.00 0.00 0.00 2.32
73 74 9.234827 TGAGAACATTCACTCAACATCAATATT 57.765 29.630 0.00 0.00 39.68 1.28
74 75 8.797350 TGAGAACATTCACTCAACATCAATAT 57.203 30.769 0.00 0.00 39.68 1.28
75 76 8.620116 TTGAGAACATTCACTCAACATCAATA 57.380 30.769 0.00 0.00 44.59 1.90
76 77 7.514784 TTGAGAACATTCACTCAACATCAAT 57.485 32.000 0.00 0.00 44.59 2.57
77 78 6.940831 TTGAGAACATTCACTCAACATCAA 57.059 33.333 0.00 0.00 44.59 2.57
84 85 7.068593 AGGAAACAAATTGAGAACATTCACTCA 59.931 33.333 0.00 0.00 40.66 3.41
85 86 7.428826 AGGAAACAAATTGAGAACATTCACTC 58.571 34.615 0.00 0.00 0.00 3.51
86 87 7.352079 AGGAAACAAATTGAGAACATTCACT 57.648 32.000 0.00 0.00 0.00 3.41
87 88 9.528018 TTAAGGAAACAAATTGAGAACATTCAC 57.472 29.630 0.00 0.00 0.00 3.18
120 121 7.156000 CCGGACACCCTAACATTTTTAAAAAT 58.844 34.615 18.40 18.40 39.07 1.82
121 122 6.097981 ACCGGACACCCTAACATTTTTAAAAA 59.902 34.615 15.38 15.38 0.00 1.94
122 123 5.597594 ACCGGACACCCTAACATTTTTAAAA 59.402 36.000 9.46 0.00 0.00 1.52
123 124 5.009811 CACCGGACACCCTAACATTTTTAAA 59.990 40.000 9.46 0.00 0.00 1.52
124 125 4.519730 CACCGGACACCCTAACATTTTTAA 59.480 41.667 9.46 0.00 0.00 1.52
125 126 4.073549 CACCGGACACCCTAACATTTTTA 58.926 43.478 9.46 0.00 0.00 1.52
126 127 2.888414 CACCGGACACCCTAACATTTTT 59.112 45.455 9.46 0.00 0.00 1.94
127 128 2.510613 CACCGGACACCCTAACATTTT 58.489 47.619 9.46 0.00 0.00 1.82
128 129 1.884928 GCACCGGACACCCTAACATTT 60.885 52.381 9.46 0.00 0.00 2.32
129 130 0.322187 GCACCGGACACCCTAACATT 60.322 55.000 9.46 0.00 0.00 2.71
130 131 1.298667 GCACCGGACACCCTAACAT 59.701 57.895 9.46 0.00 0.00 2.71
131 132 2.141448 TGCACCGGACACCCTAACA 61.141 57.895 9.46 0.00 0.00 2.41
132 133 1.670083 GTGCACCGGACACCCTAAC 60.670 63.158 9.46 0.00 31.67 2.34
133 134 2.745037 GTGCACCGGACACCCTAA 59.255 61.111 9.46 0.00 31.67 2.69
146 147 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
147 148 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
148 149 1.964373 GGTTGTGGTGCTACCGGTG 60.964 63.158 19.93 8.61 42.58 4.94
149 150 2.428622 GGTTGTGGTGCTACCGGT 59.571 61.111 13.98 13.98 42.58 5.28
150 151 1.964373 GTGGTTGTGGTGCTACCGG 60.964 63.158 0.00 0.00 44.30 5.28
151 152 1.964373 GGTGGTTGTGGTGCTACCG 60.964 63.158 0.00 0.00 44.30 4.02
152 153 1.964373 CGGTGGTTGTGGTGCTACC 60.964 63.158 0.00 0.00 42.21 3.18
153 154 1.964373 CCGGTGGTTGTGGTGCTAC 60.964 63.158 0.00 0.00 0.00 3.58
154 155 2.428187 CCGGTGGTTGTGGTGCTA 59.572 61.111 0.00 0.00 0.00 3.49
155 156 3.804329 ACCGGTGGTTGTGGTGCT 61.804 61.111 6.12 0.00 33.91 4.40
156 157 3.591835 CACCGGTGGTTGTGGTGC 61.592 66.667 27.57 0.00 45.85 5.01
158 159 4.116585 TGCACCGGTGGTTGTGGT 62.117 61.111 34.58 0.00 31.02 4.16
159 160 3.591835 GTGCACCGGTGGTTGTGG 61.592 66.667 34.58 9.21 31.02 4.17
160 161 3.591835 GGTGCACCGGTGGTTGTG 61.592 66.667 34.58 10.08 31.02 3.33
170 171 0.997196 GAGAACGTATTCGGTGCACC 59.003 55.000 26.78 26.78 40.04 5.01
171 172 0.638746 CGAGAACGTATTCGGTGCAC 59.361 55.000 8.80 8.80 40.04 4.57
172 173 1.074319 GCGAGAACGTATTCGGTGCA 61.074 55.000 19.17 0.00 40.04 4.57
173 174 1.629504 GCGAGAACGTATTCGGTGC 59.370 57.895 19.17 5.12 40.04 5.01
174 175 1.469126 CCGCGAGAACGTATTCGGTG 61.469 60.000 8.23 9.39 40.04 4.94
175 176 1.226491 CCGCGAGAACGTATTCGGT 60.226 57.895 8.23 0.00 40.04 4.69
176 177 0.317603 ATCCGCGAGAACGTATTCGG 60.318 55.000 8.23 13.64 40.04 4.30
177 178 1.043224 GATCCGCGAGAACGTATTCG 58.957 55.000 8.23 14.99 40.04 3.34
178 179 1.043224 CGATCCGCGAGAACGTATTC 58.957 55.000 8.23 0.00 44.57 1.75
179 180 0.317603 CCGATCCGCGAGAACGTATT 60.318 55.000 8.23 0.00 44.57 1.89
180 181 1.162181 TCCGATCCGCGAGAACGTAT 61.162 55.000 8.23 0.00 44.57 3.06
181 182 1.162181 ATCCGATCCGCGAGAACGTA 61.162 55.000 8.23 0.93 44.57 3.57
182 183 2.478890 ATCCGATCCGCGAGAACGT 61.479 57.895 8.23 0.00 44.57 3.99
183 184 2.011349 CATCCGATCCGCGAGAACG 61.011 63.158 8.23 13.72 44.57 3.95
184 185 1.661821 CCATCCGATCCGCGAGAAC 60.662 63.158 8.23 0.74 44.57 3.01
185 186 2.728180 CCATCCGATCCGCGAGAA 59.272 61.111 8.23 0.00 44.57 2.87
186 187 3.978491 GCCATCCGATCCGCGAGA 61.978 66.667 8.23 3.13 44.57 4.04
187 188 4.284860 TGCCATCCGATCCGCGAG 62.285 66.667 8.23 0.00 44.57 5.03
188 189 4.585526 GTGCCATCCGATCCGCGA 62.586 66.667 8.23 0.00 44.57 5.87
189 190 4.889856 TGTGCCATCCGATCCGCG 62.890 66.667 0.00 0.00 40.47 6.46
190 191 3.272334 GTGTGCCATCCGATCCGC 61.272 66.667 0.00 0.00 0.00 5.54
191 192 2.961721 CGTGTGCCATCCGATCCG 60.962 66.667 0.00 0.00 0.00 4.18
192 193 2.588877 CCGTGTGCCATCCGATCC 60.589 66.667 0.00 0.00 0.00 3.36
193 194 2.588877 CCCGTGTGCCATCCGATC 60.589 66.667 0.00 0.00 0.00 3.69
194 195 4.175337 CCCCGTGTGCCATCCGAT 62.175 66.667 0.00 0.00 0.00 4.18
197 198 4.028490 TCACCCCGTGTGCCATCC 62.028 66.667 0.00 0.00 45.03 3.51
198 199 2.746277 GTCACCCCGTGTGCCATC 60.746 66.667 0.00 0.00 45.03 3.51
199 200 4.344865 GGTCACCCCGTGTGCCAT 62.345 66.667 9.37 0.00 45.03 4.40
209 210 1.813728 GATACCCCGATCGGTCACCC 61.814 65.000 31.22 14.29 37.34 4.61
210 211 1.664306 GATACCCCGATCGGTCACC 59.336 63.158 31.22 13.26 37.34 4.02
211 212 1.664306 GGATACCCCGATCGGTCAC 59.336 63.158 31.22 17.05 37.34 3.67
212 213 4.186136 GGATACCCCGATCGGTCA 57.814 61.111 31.22 16.69 37.34 4.02
224 225 1.222661 GTGGGTCAACCGGGGATAC 59.777 63.158 6.32 0.00 44.64 2.24
225 226 2.360767 CGTGGGTCAACCGGGGATA 61.361 63.158 6.32 0.00 44.64 2.59
226 227 3.712907 CGTGGGTCAACCGGGGAT 61.713 66.667 6.32 0.00 44.64 3.85
230 231 3.659089 CTAGGCGTGGGTCAACCGG 62.659 68.421 0.00 0.00 44.64 5.28
231 232 1.597797 TACTAGGCGTGGGTCAACCG 61.598 60.000 0.00 0.00 44.64 4.44
232 233 0.108472 GTACTAGGCGTGGGTCAACC 60.108 60.000 0.00 0.00 40.81 3.77
233 234 0.108472 GGTACTAGGCGTGGGTCAAC 60.108 60.000 0.00 0.00 0.00 3.18
234 235 1.259840 GGGTACTAGGCGTGGGTCAA 61.260 60.000 0.00 0.00 0.00 3.18
235 236 1.683365 GGGTACTAGGCGTGGGTCA 60.683 63.158 0.00 0.00 0.00 4.02
236 237 2.779033 CGGGTACTAGGCGTGGGTC 61.779 68.421 0.00 0.00 0.00 4.46
237 238 2.757099 CGGGTACTAGGCGTGGGT 60.757 66.667 0.00 0.00 0.00 4.51
238 239 4.217159 GCGGGTACTAGGCGTGGG 62.217 72.222 0.00 0.00 0.00 4.61
239 240 1.177256 ATAGCGGGTACTAGGCGTGG 61.177 60.000 0.00 0.00 0.00 4.94
240 241 1.527034 TATAGCGGGTACTAGGCGTG 58.473 55.000 0.00 0.00 0.00 5.34
241 242 2.363683 GATATAGCGGGTACTAGGCGT 58.636 52.381 0.00 0.00 0.00 5.68
242 243 1.329906 CGATATAGCGGGTACTAGGCG 59.670 57.143 1.57 0.00 0.00 5.52
243 244 2.097142 CACGATATAGCGGGTACTAGGC 59.903 54.545 15.68 0.00 35.12 3.93
244 245 3.603532 TCACGATATAGCGGGTACTAGG 58.396 50.000 13.02 0.00 35.83 3.02
245 246 4.035324 CCATCACGATATAGCGGGTACTAG 59.965 50.000 13.02 0.00 35.83 2.57
246 247 3.943381 CCATCACGATATAGCGGGTACTA 59.057 47.826 13.02 0.00 35.83 1.82
247 248 2.753452 CCATCACGATATAGCGGGTACT 59.247 50.000 13.02 0.00 35.83 2.73
248 249 2.734492 GCCATCACGATATAGCGGGTAC 60.734 54.545 13.02 0.00 35.83 3.34
249 250 1.475280 GCCATCACGATATAGCGGGTA 59.525 52.381 13.02 0.00 35.83 3.69
250 251 0.246635 GCCATCACGATATAGCGGGT 59.753 55.000 13.02 0.00 35.83 5.28
251 252 0.532573 AGCCATCACGATATAGCGGG 59.467 55.000 15.68 11.35 35.63 6.13
252 253 2.683362 TCTAGCCATCACGATATAGCGG 59.317 50.000 15.68 4.01 35.12 5.52
253 254 3.686128 GTCTAGCCATCACGATATAGCG 58.314 50.000 9.18 9.18 37.29 4.26
254 255 3.374367 TCGTCTAGCCATCACGATATAGC 59.626 47.826 0.00 0.00 37.62 2.97
260 261 1.604278 CTCATCGTCTAGCCATCACGA 59.396 52.381 6.13 6.13 45.93 4.35
261 262 1.335415 CCTCATCGTCTAGCCATCACG 60.335 57.143 0.00 0.00 34.78 4.35
262 263 1.604185 GCCTCATCGTCTAGCCATCAC 60.604 57.143 0.00 0.00 0.00 3.06
263 264 0.676184 GCCTCATCGTCTAGCCATCA 59.324 55.000 0.00 0.00 0.00 3.07
264 265 0.965439 AGCCTCATCGTCTAGCCATC 59.035 55.000 0.00 0.00 0.00 3.51
265 266 1.418334 AAGCCTCATCGTCTAGCCAT 58.582 50.000 0.00 0.00 0.00 4.40
266 267 1.195115 AAAGCCTCATCGTCTAGCCA 58.805 50.000 0.00 0.00 0.00 4.75
267 268 3.454371 TTAAAGCCTCATCGTCTAGCC 57.546 47.619 0.00 0.00 0.00 3.93
268 269 4.621991 TGATTAAAGCCTCATCGTCTAGC 58.378 43.478 0.00 0.00 0.00 3.42
269 270 6.942886 GATGATTAAAGCCTCATCGTCTAG 57.057 41.667 1.97 0.00 38.66 2.43
275 276 6.017275 CCTTGTGAGATGATTAAAGCCTCATC 60.017 42.308 8.21 8.21 45.26 2.92
276 277 5.826737 CCTTGTGAGATGATTAAAGCCTCAT 59.173 40.000 0.00 0.00 36.44 2.90
277 278 5.045651 TCCTTGTGAGATGATTAAAGCCTCA 60.046 40.000 0.00 0.00 0.00 3.86
278 279 5.431765 TCCTTGTGAGATGATTAAAGCCTC 58.568 41.667 0.00 0.00 0.00 4.70
279 280 5.441718 TCCTTGTGAGATGATTAAAGCCT 57.558 39.130 0.00 0.00 0.00 4.58
280 281 6.071952 TGTTTCCTTGTGAGATGATTAAAGCC 60.072 38.462 0.00 0.00 0.00 4.35
281 282 6.913170 TGTTTCCTTGTGAGATGATTAAAGC 58.087 36.000 0.00 0.00 0.00 3.51
283 284 9.739276 ACTATGTTTCCTTGTGAGATGATTAAA 57.261 29.630 0.00 0.00 0.00 1.52
286 287 9.739276 TTTACTATGTTTCCTTGTGAGATGATT 57.261 29.630 0.00 0.00 0.00 2.57
287 288 9.167311 GTTTACTATGTTTCCTTGTGAGATGAT 57.833 33.333 0.00 0.00 0.00 2.45
288 289 7.330946 CGTTTACTATGTTTCCTTGTGAGATGA 59.669 37.037 0.00 0.00 0.00 2.92
289 290 7.330946 TCGTTTACTATGTTTCCTTGTGAGATG 59.669 37.037 0.00 0.00 0.00 2.90
290 291 7.383687 TCGTTTACTATGTTTCCTTGTGAGAT 58.616 34.615 0.00 0.00 0.00 2.75
291 292 6.751157 TCGTTTACTATGTTTCCTTGTGAGA 58.249 36.000 0.00 0.00 0.00 3.27
292 293 7.416154 TTCGTTTACTATGTTTCCTTGTGAG 57.584 36.000 0.00 0.00 0.00 3.51
293 294 7.789273 TTTCGTTTACTATGTTTCCTTGTGA 57.211 32.000 0.00 0.00 0.00 3.58
294 295 8.073768 ACATTTCGTTTACTATGTTTCCTTGTG 58.926 33.333 0.00 0.00 0.00 3.33
295 296 8.161699 ACATTTCGTTTACTATGTTTCCTTGT 57.838 30.769 0.00 0.00 0.00 3.16
296 297 7.749126 GGACATTTCGTTTACTATGTTTCCTTG 59.251 37.037 0.00 0.00 31.76 3.61
297 298 7.446013 TGGACATTTCGTTTACTATGTTTCCTT 59.554 33.333 0.00 0.00 31.76 3.36
298 299 6.938030 TGGACATTTCGTTTACTATGTTTCCT 59.062 34.615 0.00 0.00 31.76 3.36
299 300 7.136289 TGGACATTTCGTTTACTATGTTTCC 57.864 36.000 0.00 0.00 31.76 3.13
304 305 9.221775 GCTTTATTGGACATTTCGTTTACTATG 57.778 33.333 0.00 0.00 0.00 2.23
305 306 9.174166 AGCTTTATTGGACATTTCGTTTACTAT 57.826 29.630 0.00 0.00 0.00 2.12
306 307 8.556213 AGCTTTATTGGACATTTCGTTTACTA 57.444 30.769 0.00 0.00 0.00 1.82
307 308 7.448748 AGCTTTATTGGACATTTCGTTTACT 57.551 32.000 0.00 0.00 0.00 2.24
308 309 8.662141 TCTAGCTTTATTGGACATTTCGTTTAC 58.338 33.333 0.00 0.00 0.00 2.01
327 328 2.496470 CCTCTTGTAACGGGTCTAGCTT 59.504 50.000 0.00 0.00 0.00 3.74
380 381 1.861542 CGTTTGCCGGCCAAGAATGA 61.862 55.000 26.77 0.00 34.34 2.57
453 454 1.807573 GGTTTCTCCGCTCGCTCAG 60.808 63.158 0.00 0.00 0.00 3.35
461 462 0.462759 AGCTATGCTGGTTTCTCCGC 60.463 55.000 0.00 0.00 37.57 5.54
462 463 1.936547 GAAGCTATGCTGGTTTCTCCG 59.063 52.381 0.00 0.00 39.62 4.63
463 464 2.092699 AGGAAGCTATGCTGGTTTCTCC 60.093 50.000 0.00 0.00 39.62 3.71
464 465 3.274095 AGGAAGCTATGCTGGTTTCTC 57.726 47.619 0.00 0.00 39.62 2.87
482 483 5.564550 CTCTAACCCCATGATCCAAATAGG 58.435 45.833 0.00 0.00 39.47 2.57
483 484 5.006386 GCTCTAACCCCATGATCCAAATAG 58.994 45.833 0.00 0.00 0.00 1.73
484 485 4.665009 AGCTCTAACCCCATGATCCAAATA 59.335 41.667 0.00 0.00 0.00 1.40
485 486 3.464833 AGCTCTAACCCCATGATCCAAAT 59.535 43.478 0.00 0.00 0.00 2.32
486 487 2.852449 AGCTCTAACCCCATGATCCAAA 59.148 45.455 0.00 0.00 0.00 3.28
487 488 2.492025 AGCTCTAACCCCATGATCCAA 58.508 47.619 0.00 0.00 0.00 3.53
488 489 2.196742 AGCTCTAACCCCATGATCCA 57.803 50.000 0.00 0.00 0.00 3.41
489 490 3.243724 ACTAGCTCTAACCCCATGATCC 58.756 50.000 0.00 0.00 0.00 3.36
490 491 4.965200 AACTAGCTCTAACCCCATGATC 57.035 45.455 0.00 0.00 0.00 2.92
491 492 4.141390 CCAAACTAGCTCTAACCCCATGAT 60.141 45.833 0.00 0.00 0.00 2.45
492 493 3.199946 CCAAACTAGCTCTAACCCCATGA 59.800 47.826 0.00 0.00 0.00 3.07
493 494 3.199946 TCCAAACTAGCTCTAACCCCATG 59.800 47.826 0.00 0.00 0.00 3.66
494 495 3.460825 TCCAAACTAGCTCTAACCCCAT 58.539 45.455 0.00 0.00 0.00 4.00
495 496 2.910544 TCCAAACTAGCTCTAACCCCA 58.089 47.619 0.00 0.00 0.00 4.96
496 497 4.505324 AATCCAAACTAGCTCTAACCCC 57.495 45.455 0.00 0.00 0.00 4.95
497 498 6.236558 ACTAATCCAAACTAGCTCTAACCC 57.763 41.667 0.00 0.00 0.00 4.11
498 499 7.065923 CCAAACTAATCCAAACTAGCTCTAACC 59.934 40.741 0.00 0.00 0.00 2.85
499 500 7.822822 TCCAAACTAATCCAAACTAGCTCTAAC 59.177 37.037 0.00 0.00 0.00 2.34
500 501 7.913789 TCCAAACTAATCCAAACTAGCTCTAA 58.086 34.615 0.00 0.00 0.00 2.10
501 502 7.490657 TCCAAACTAATCCAAACTAGCTCTA 57.509 36.000 0.00 0.00 0.00 2.43
502 503 6.374417 TCCAAACTAATCCAAACTAGCTCT 57.626 37.500 0.00 0.00 0.00 4.09
503 504 5.065346 GCTCCAAACTAATCCAAACTAGCTC 59.935 44.000 0.00 0.00 0.00 4.09
504 505 4.944317 GCTCCAAACTAATCCAAACTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
505 506 4.944317 AGCTCCAAACTAATCCAAACTAGC 59.056 41.667 0.00 0.00 0.00 3.42
506 507 6.173339 TGAGCTCCAAACTAATCCAAACTAG 58.827 40.000 12.15 0.00 0.00 2.57
507 508 6.121776 TGAGCTCCAAACTAATCCAAACTA 57.878 37.500 12.15 0.00 0.00 2.24
508 509 4.985538 TGAGCTCCAAACTAATCCAAACT 58.014 39.130 12.15 0.00 0.00 2.66
509 510 5.705609 TTGAGCTCCAAACTAATCCAAAC 57.294 39.130 12.15 0.00 0.00 2.93
510 511 6.916360 ATTTGAGCTCCAAACTAATCCAAA 57.084 33.333 12.15 1.17 46.41 3.28
511 512 7.093945 GGTTATTTGAGCTCCAAACTAATCCAA 60.094 37.037 12.15 0.00 46.41 3.53
512 513 6.377146 GGTTATTTGAGCTCCAAACTAATCCA 59.623 38.462 12.15 0.00 46.41 3.41
513 514 6.183360 GGGTTATTTGAGCTCCAAACTAATCC 60.183 42.308 12.15 10.27 46.41 3.01
514 515 6.377146 TGGGTTATTTGAGCTCCAAACTAATC 59.623 38.462 12.15 5.12 46.41 1.75
515 516 6.252995 TGGGTTATTTGAGCTCCAAACTAAT 58.747 36.000 12.15 4.25 46.41 1.73
516 517 5.636123 TGGGTTATTTGAGCTCCAAACTAA 58.364 37.500 12.15 2.11 46.41 2.24
517 518 5.249780 TGGGTTATTTGAGCTCCAAACTA 57.750 39.130 12.15 0.00 46.41 2.24
518 519 4.112634 TGGGTTATTTGAGCTCCAAACT 57.887 40.909 12.15 0.00 46.41 2.66
519 520 4.864704 TTGGGTTATTTGAGCTCCAAAC 57.135 40.909 12.15 9.76 46.41 2.93
521 522 4.898861 ACTTTTGGGTTATTTGAGCTCCAA 59.101 37.500 12.15 7.03 33.11 3.53
522 523 4.479158 ACTTTTGGGTTATTTGAGCTCCA 58.521 39.130 12.15 0.00 0.00 3.86
523 524 6.775594 ATACTTTTGGGTTATTTGAGCTCC 57.224 37.500 12.15 0.00 0.00 4.70
524 525 7.826690 TGAATACTTTTGGGTTATTTGAGCTC 58.173 34.615 6.82 6.82 0.00 4.09
525 526 7.775053 TGAATACTTTTGGGTTATTTGAGCT 57.225 32.000 0.00 0.00 0.00 4.09
526 527 8.708742 GTTTGAATACTTTTGGGTTATTTGAGC 58.291 33.333 0.00 0.00 0.00 4.26
527 528 9.757227 TGTTTGAATACTTTTGGGTTATTTGAG 57.243 29.630 0.00 0.00 0.00 3.02
528 529 9.757227 CTGTTTGAATACTTTTGGGTTATTTGA 57.243 29.630 0.00 0.00 0.00 2.69
529 530 8.987890 CCTGTTTGAATACTTTTGGGTTATTTG 58.012 33.333 0.00 0.00 0.00 2.32
530 531 8.154203 CCCTGTTTGAATACTTTTGGGTTATTT 58.846 33.333 0.00 0.00 0.00 1.40
531 532 7.511028 TCCCTGTTTGAATACTTTTGGGTTATT 59.489 33.333 0.00 0.00 34.14 1.40
532 533 7.013834 TCCCTGTTTGAATACTTTTGGGTTAT 58.986 34.615 0.00 0.00 34.14 1.89
533 534 6.374588 TCCCTGTTTGAATACTTTTGGGTTA 58.625 36.000 0.00 0.00 34.14 2.85
534 535 5.212745 TCCCTGTTTGAATACTTTTGGGTT 58.787 37.500 0.00 0.00 34.14 4.11
535 536 4.810345 TCCCTGTTTGAATACTTTTGGGT 58.190 39.130 0.00 0.00 34.14 4.51
536 537 4.220602 CCTCCCTGTTTGAATACTTTTGGG 59.779 45.833 0.00 0.00 0.00 4.12
537 538 4.220602 CCCTCCCTGTTTGAATACTTTTGG 59.779 45.833 0.00 0.00 0.00 3.28
538 539 4.832823 ACCCTCCCTGTTTGAATACTTTTG 59.167 41.667 0.00 0.00 0.00 2.44
539 540 5.074746 ACCCTCCCTGTTTGAATACTTTT 57.925 39.130 0.00 0.00 0.00 2.27
540 541 4.741928 ACCCTCCCTGTTTGAATACTTT 57.258 40.909 0.00 0.00 0.00 2.66
541 542 4.741928 AACCCTCCCTGTTTGAATACTT 57.258 40.909 0.00 0.00 0.00 2.24
542 543 5.098663 TCTAACCCTCCCTGTTTGAATACT 58.901 41.667 0.00 0.00 0.00 2.12
543 544 5.431179 TCTAACCCTCCCTGTTTGAATAC 57.569 43.478 0.00 0.00 0.00 1.89
544 545 6.423182 CATTCTAACCCTCCCTGTTTGAATA 58.577 40.000 10.75 0.00 42.27 1.75
545 546 5.264395 CATTCTAACCCTCCCTGTTTGAAT 58.736 41.667 6.89 6.89 43.75 2.57
546 547 4.508405 CCATTCTAACCCTCCCTGTTTGAA 60.508 45.833 0.00 0.00 40.11 2.69
547 548 3.010138 CCATTCTAACCCTCCCTGTTTGA 59.990 47.826 0.00 0.00 0.00 2.69
548 549 3.356290 CCATTCTAACCCTCCCTGTTTG 58.644 50.000 0.00 0.00 0.00 2.93
549 550 2.311841 CCCATTCTAACCCTCCCTGTTT 59.688 50.000 0.00 0.00 0.00 2.83
550 551 1.923148 CCCATTCTAACCCTCCCTGTT 59.077 52.381 0.00 0.00 0.00 3.16
551 552 1.203570 ACCCATTCTAACCCTCCCTGT 60.204 52.381 0.00 0.00 0.00 4.00
552 553 1.596496 ACCCATTCTAACCCTCCCTG 58.404 55.000 0.00 0.00 0.00 4.45
553 554 2.378308 AACCCATTCTAACCCTCCCT 57.622 50.000 0.00 0.00 0.00 4.20
554 555 3.120898 ACTAACCCATTCTAACCCTCCC 58.879 50.000 0.00 0.00 0.00 4.30
555 556 4.857130 AACTAACCCATTCTAACCCTCC 57.143 45.455 0.00 0.00 0.00 4.30
556 557 5.812286 TGAAACTAACCCATTCTAACCCTC 58.188 41.667 0.00 0.00 0.00 4.30
557 558 5.853572 TGAAACTAACCCATTCTAACCCT 57.146 39.130 0.00 0.00 0.00 4.34
558 559 6.424032 AGATGAAACTAACCCATTCTAACCC 58.576 40.000 0.00 0.00 0.00 4.11
559 560 9.628500 ATTAGATGAAACTAACCCATTCTAACC 57.372 33.333 0.00 0.00 35.60 2.85
561 562 9.847224 GGATTAGATGAAACTAACCCATTCTAA 57.153 33.333 0.00 0.00 36.37 2.10
562 563 8.998814 TGGATTAGATGAAACTAACCCATTCTA 58.001 33.333 0.00 0.00 40.07 2.10
563 564 7.872138 TGGATTAGATGAAACTAACCCATTCT 58.128 34.615 0.00 0.00 40.07 2.40
564 565 8.406297 GTTGGATTAGATGAAACTAACCCATTC 58.594 37.037 0.00 0.00 43.18 2.67
565 566 8.116026 AGTTGGATTAGATGAAACTAACCCATT 58.884 33.333 0.00 0.00 43.18 3.16
566 567 7.643123 AGTTGGATTAGATGAAACTAACCCAT 58.357 34.615 0.00 0.00 43.18 4.00
567 568 7.027874 AGTTGGATTAGATGAAACTAACCCA 57.972 36.000 0.00 0.00 42.35 4.51
568 569 9.274206 GATAGTTGGATTAGATGAAACTAACCC 57.726 37.037 0.00 0.00 36.75 4.11
569 570 9.274206 GGATAGTTGGATTAGATGAAACTAACC 57.726 37.037 0.00 0.00 38.37 2.85
572 573 9.434275 TCAGGATAGTTGGATTAGATGAAACTA 57.566 33.333 0.00 0.00 37.64 2.24
573 574 8.324191 TCAGGATAGTTGGATTAGATGAAACT 57.676 34.615 0.00 0.00 35.39 2.66
574 575 8.997323 CATCAGGATAGTTGGATTAGATGAAAC 58.003 37.037 0.00 0.00 33.94 2.78
575 576 8.159447 CCATCAGGATAGTTGGATTAGATGAAA 58.841 37.037 0.00 0.00 36.89 2.69
576 577 7.513781 TCCATCAGGATAGTTGGATTAGATGAA 59.486 37.037 0.00 0.00 39.61 2.57
577 578 7.018769 TCCATCAGGATAGTTGGATTAGATGA 58.981 38.462 0.00 0.00 39.61 2.92
578 579 7.179872 TCTCCATCAGGATAGTTGGATTAGATG 59.820 40.741 0.00 0.00 44.70 2.90
579 580 7.251936 TCTCCATCAGGATAGTTGGATTAGAT 58.748 38.462 0.00 0.00 44.70 1.98
580 581 6.624297 TCTCCATCAGGATAGTTGGATTAGA 58.376 40.000 0.00 0.00 44.70 2.10
581 582 6.070881 CCTCTCCATCAGGATAGTTGGATTAG 60.071 46.154 0.00 0.00 44.70 1.73
582 583 5.782331 CCTCTCCATCAGGATAGTTGGATTA 59.218 44.000 0.00 0.00 44.70 1.75
583 584 4.596643 CCTCTCCATCAGGATAGTTGGATT 59.403 45.833 0.00 0.00 44.70 3.01
584 585 4.166539 CCTCTCCATCAGGATAGTTGGAT 58.833 47.826 0.00 0.00 44.70 3.41
585 586 3.051803 ACCTCTCCATCAGGATAGTTGGA 60.052 47.826 0.00 0.00 44.70 3.53
586 587 3.070734 CACCTCTCCATCAGGATAGTTGG 59.929 52.174 0.00 0.00 44.70 3.77
587 588 3.494048 GCACCTCTCCATCAGGATAGTTG 60.494 52.174 0.00 0.00 44.70 3.16
588 589 2.703007 GCACCTCTCCATCAGGATAGTT 59.297 50.000 0.00 0.00 44.70 2.24
589 590 2.090831 AGCACCTCTCCATCAGGATAGT 60.091 50.000 0.00 0.00 44.70 2.12
590 591 2.607499 AGCACCTCTCCATCAGGATAG 58.393 52.381 0.00 0.00 44.70 2.08
591 592 2.783379 AGCACCTCTCCATCAGGATA 57.217 50.000 0.00 0.00 44.70 2.59
592 593 1.890552 AAGCACCTCTCCATCAGGAT 58.109 50.000 0.00 0.00 44.70 3.24
593 594 2.550277 TAAGCACCTCTCCATCAGGA 57.450 50.000 0.00 0.00 43.21 3.86
594 595 3.853355 AATAAGCACCTCTCCATCAGG 57.147 47.619 0.00 0.00 37.03 3.86
595 596 4.774124 TCAAATAAGCACCTCTCCATCAG 58.226 43.478 0.00 0.00 0.00 2.90
596 597 4.225942 ACTCAAATAAGCACCTCTCCATCA 59.774 41.667 0.00 0.00 0.00 3.07
597 598 4.775236 ACTCAAATAAGCACCTCTCCATC 58.225 43.478 0.00 0.00 0.00 3.51
598 599 4.851639 ACTCAAATAAGCACCTCTCCAT 57.148 40.909 0.00 0.00 0.00 3.41
599 600 4.640771 AACTCAAATAAGCACCTCTCCA 57.359 40.909 0.00 0.00 0.00 3.86
600 601 5.978814 TCTAACTCAAATAAGCACCTCTCC 58.021 41.667 0.00 0.00 0.00 3.71
601 602 6.533367 CACTCTAACTCAAATAAGCACCTCTC 59.467 42.308 0.00 0.00 0.00 3.20
602 603 6.402222 CACTCTAACTCAAATAAGCACCTCT 58.598 40.000 0.00 0.00 0.00 3.69
603 604 5.582665 CCACTCTAACTCAAATAAGCACCTC 59.417 44.000 0.00 0.00 0.00 3.85
604 605 5.491982 CCACTCTAACTCAAATAAGCACCT 58.508 41.667 0.00 0.00 0.00 4.00
605 606 4.636206 CCCACTCTAACTCAAATAAGCACC 59.364 45.833 0.00 0.00 0.00 5.01
606 607 5.246307 ACCCACTCTAACTCAAATAAGCAC 58.754 41.667 0.00 0.00 0.00 4.40
607 608 5.499004 ACCCACTCTAACTCAAATAAGCA 57.501 39.130 0.00 0.00 0.00 3.91
608 609 7.328737 TCTAACCCACTCTAACTCAAATAAGC 58.671 38.462 0.00 0.00 0.00 3.09
609 610 9.720769 TTTCTAACCCACTCTAACTCAAATAAG 57.279 33.333 0.00 0.00 0.00 1.73
614 615 9.498176 GTTATTTTCTAACCCACTCTAACTCAA 57.502 33.333 0.00 0.00 0.00 3.02
615 616 8.877195 AGTTATTTTCTAACCCACTCTAACTCA 58.123 33.333 0.00 0.00 0.00 3.41
616 617 9.368674 GAGTTATTTTCTAACCCACTCTAACTC 57.631 37.037 0.00 0.00 36.86 3.01
617 618 9.102453 AGAGTTATTTTCTAACCCACTCTAACT 57.898 33.333 0.00 0.00 38.16 2.24
647 648 8.185506 TGTTTGGATACTCTAACACTGTTAGA 57.814 34.615 24.12 24.12 31.46 2.10
648 649 7.545965 CCTGTTTGGATACTCTAACACTGTTAG 59.454 40.741 19.24 19.24 38.35 2.34
649 650 7.233962 TCCTGTTTGGATACTCTAACACTGTTA 59.766 37.037 1.67 1.67 40.56 2.41
650 651 6.042781 TCCTGTTTGGATACTCTAACACTGTT 59.957 38.462 0.00 0.00 40.56 3.16
651 652 5.542635 TCCTGTTTGGATACTCTAACACTGT 59.457 40.000 0.00 0.00 40.56 3.55
652 653 6.037786 TCCTGTTTGGATACTCTAACACTG 57.962 41.667 0.00 0.00 40.56 3.66
665 666 0.107831 CGACCAAGGTCCTGTTTGGA 59.892 55.000 14.10 0.00 45.32 3.53
667 668 0.944386 CACGACCAAGGTCCTGTTTG 59.056 55.000 13.35 1.31 41.76 2.93
668 669 0.818040 GCACGACCAAGGTCCTGTTT 60.818 55.000 13.35 0.00 41.76 2.83
669 670 1.227853 GCACGACCAAGGTCCTGTT 60.228 57.895 13.35 0.00 41.76 3.16
670 671 1.978455 TTGCACGACCAAGGTCCTGT 61.978 55.000 13.35 4.01 41.76 4.00
671 672 1.227823 TTGCACGACCAAGGTCCTG 60.228 57.895 13.35 12.70 41.76 3.86
672 673 1.227853 GTTGCACGACCAAGGTCCT 60.228 57.895 13.35 0.00 41.76 3.85
673 674 2.604174 CGTTGCACGACCAAGGTCC 61.604 63.158 13.35 0.75 46.05 4.46
674 675 2.604174 CCGTTGCACGACCAAGGTC 61.604 63.158 9.22 9.22 46.05 3.85
675 676 2.590575 CCGTTGCACGACCAAGGT 60.591 61.111 9.75 0.00 46.05 3.50
676 677 2.590575 ACCGTTGCACGACCAAGG 60.591 61.111 9.75 0.00 46.05 3.61
677 678 1.885388 TCACCGTTGCACGACCAAG 60.885 57.895 9.75 0.00 46.05 3.61
698 699 2.238521 GAAAAGTTCCATCACCTGGCA 58.761 47.619 0.00 0.00 45.52 4.92
712 713 1.073199 CCTCCTGCCACGGAAAAGT 59.927 57.895 0.00 0.00 31.44 2.66
808 825 2.884997 AATATTCAGCGGCGGGTGCA 62.885 55.000 17.69 8.42 45.35 4.57
809 826 2.117941 GAATATTCAGCGGCGGGTGC 62.118 60.000 17.69 0.00 41.40 5.01
810 827 1.507141 GGAATATTCAGCGGCGGGTG 61.507 60.000 17.07 16.54 42.98 4.61
811 828 1.227853 GGAATATTCAGCGGCGGGT 60.228 57.895 17.07 0.00 0.00 5.28
832 849 0.312416 ATGGAGCGATACAGCGACTC 59.688 55.000 0.00 0.00 43.00 3.36
911 928 2.270527 GTGAGCAGGGAGGAAGGC 59.729 66.667 0.00 0.00 0.00 4.35
930 948 0.524816 AACTGCGGTGCGATACTACG 60.525 55.000 0.00 0.00 0.00 3.51
931 949 1.636988 AAACTGCGGTGCGATACTAC 58.363 50.000 0.00 0.00 0.00 2.73
977 1006 1.264749 TGGCTGGTAGGCTGGTACTG 61.265 60.000 0.00 0.00 41.96 2.74
1043 1072 2.789842 GCTGCTGAGCAATGGATGA 58.210 52.632 9.07 0.00 45.46 2.92
1066 1095 2.472816 CAATTTGCCTTTGCTTGTCGT 58.527 42.857 0.00 0.00 38.71 4.34
1068 1097 2.837498 ACCAATTTGCCTTTGCTTGTC 58.163 42.857 0.00 0.00 38.71 3.18
1086 1115 1.002033 CGTCACGGGCTAGTACATACC 60.002 57.143 0.00 0.00 0.00 2.73
1090 1119 0.606130 TGACGTCACGGGCTAGTACA 60.606 55.000 15.76 0.00 0.00 2.90
1091 1120 0.179179 GTGACGTCACGGGCTAGTAC 60.179 60.000 31.03 6.33 37.10 2.73
1092 1121 2.174334 GTGACGTCACGGGCTAGTA 58.826 57.895 31.03 0.00 37.10 1.82
1251 1331 3.661648 CCCTGGTGGTTCCCCTGG 61.662 72.222 12.06 12.06 39.96 4.45
1352 1465 3.246699 CAGCTTCACAAACCAATGCAAAG 59.753 43.478 0.00 0.00 0.00 2.77
1530 2406 8.525316 TGAAATAAGATCAATCATGTTGTGCTT 58.475 29.630 0.00 7.63 0.00 3.91
1599 2483 2.024588 CCGCGCCAATGAATTCCG 59.975 61.111 0.00 0.00 0.00 4.30
1675 2569 2.538141 CCAACCCCAGCTCCCTCAA 61.538 63.158 0.00 0.00 0.00 3.02
1728 2622 0.027455 TTTTCTGCAAGCACGTCACG 59.973 50.000 0.00 0.00 0.00 4.35
1781 2675 1.068832 CAAGTACGCGCGCTTCTGTA 61.069 55.000 32.58 20.26 0.00 2.74
1827 2727 6.314648 CAGCTTTGCTCTTGTTGTATCAGATA 59.685 38.462 0.00 0.00 36.40 1.98
1834 2737 3.498397 GCTACAGCTTTGCTCTTGTTGTA 59.502 43.478 0.00 0.00 36.40 2.41
1853 2756 7.936847 TCCTGACAGTATTTTCTTTTCTTGCTA 59.063 33.333 0.93 0.00 0.00 3.49
1859 2762 9.196552 CCAAAATCCTGACAGTATTTTCTTTTC 57.803 33.333 13.98 0.00 32.05 2.29
1943 2846 7.255001 CCAAAATACTTGTCGTGGTCTTAGTTT 60.255 37.037 0.00 0.00 0.00 2.66
1950 2853 5.390613 CATTCCAAAATACTTGTCGTGGTC 58.609 41.667 0.00 0.00 0.00 4.02
2152 4571 9.724839 CAAACGAGACTAAATTGGAAAAGTAAA 57.275 29.630 0.00 0.00 0.00 2.01
2153 4572 8.347035 CCAAACGAGACTAAATTGGAAAAGTAA 58.653 33.333 6.74 0.00 42.46 2.24
2154 4573 7.040961 CCCAAACGAGACTAAATTGGAAAAGTA 60.041 37.037 12.09 0.00 42.46 2.24
2169 4589 1.303317 ATGGCCACCCAAACGAGAC 60.303 57.895 8.16 0.00 46.14 3.36
2171 4591 1.178534 AACATGGCCACCCAAACGAG 61.179 55.000 8.16 0.00 46.14 4.18
2221 6936 7.383102 ACTAGCCATCACTAATTTTGTCAAG 57.617 36.000 0.00 0.00 0.00 3.02
2231 6946 1.553248 ACCGCAACTAGCCATCACTAA 59.447 47.619 0.00 0.00 41.38 2.24
2342 7058 5.220662 CCAACATTGAAGATGCTACGGTAAG 60.221 44.000 0.00 0.00 0.00 2.34
2364 7080 3.588842 AGAGACCATCTGTCCAAAATCCA 59.411 43.478 0.00 0.00 45.68 3.41
2380 7096 3.997681 GACCAAACTGCTAAGAAGAGACC 59.002 47.826 0.00 0.00 0.00 3.85
2390 7106 7.367285 GTTACATTTCATTGACCAAACTGCTA 58.633 34.615 0.00 0.00 0.00 3.49
2392 7108 5.405269 GGTTACATTTCATTGACCAAACTGC 59.595 40.000 0.00 0.00 0.00 4.40
2400 7116 5.801947 GCATGAGTGGTTACATTTCATTGAC 59.198 40.000 0.00 0.00 33.94 3.18
2409 7125 3.369756 CGTTAACGCATGAGTGGTTACAT 59.630 43.478 16.05 0.00 0.00 2.29
2412 7128 2.029200 TCCGTTAACGCATGAGTGGTTA 60.029 45.455 22.43 0.00 38.18 2.85
2414 7130 0.319083 TCCGTTAACGCATGAGTGGT 59.681 50.000 22.43 0.00 38.18 4.16
2422 7138 2.099592 ACCGAGAATATCCGTTAACGCA 59.900 45.455 22.43 8.59 38.18 5.24
2427 7143 4.641541 TGACAGAACCGAGAATATCCGTTA 59.358 41.667 0.00 0.00 30.73 3.18
2446 7162 0.745128 AACCGCCAAAGTCGTTGACA 60.745 50.000 0.00 0.00 39.87 3.58
2454 7170 1.819905 CAACCCAAACCGCCAAAGT 59.180 52.632 0.00 0.00 0.00 2.66
2477 7193 1.050204 AAAACCATGCACATGCCAGT 58.950 45.000 5.06 0.00 41.18 4.00
2502 7218 3.303526 GCGGTACAAATGTCGAAACAACT 60.304 43.478 0.00 0.00 39.30 3.16
2509 7225 2.689646 TCATTGCGGTACAAATGTCGA 58.310 42.857 12.28 0.00 42.86 4.20
2522 7238 4.332543 TGAGTGGCTATAAGTTTCATTGCG 59.667 41.667 0.00 0.00 0.00 4.85
2545 7261 1.160137 GCCGTCTCAAAAGCTCACAT 58.840 50.000 0.00 0.00 0.00 3.21
2566 7282 2.884367 CGGTGCAAATGCCGGAAT 59.116 55.556 5.05 0.00 43.85 3.01
2579 7295 2.746277 GCAGTAGTTGGGGCGGTG 60.746 66.667 0.00 0.00 0.00 4.94
2594 7310 2.202866 GAGGAATCACCCTCGAGCA 58.797 57.895 6.99 0.00 42.80 4.26
2620 7336 4.814294 CGCTCAGTACCGCACCCC 62.814 72.222 0.00 0.00 0.00 4.95
2725 7442 5.576447 ACAACCACTCCAAACAGTAAAAG 57.424 39.130 0.00 0.00 0.00 2.27
2742 7459 6.586082 CAAGCACTTGAATAAATGGTACAACC 59.414 38.462 4.31 0.00 42.53 3.77
2752 7469 5.997746 AGAGCAGTACAAGCACTTGAATAAA 59.002 36.000 16.95 0.00 42.93 1.40
2757 7474 3.574396 ACTAGAGCAGTACAAGCACTTGA 59.426 43.478 16.95 0.00 43.24 3.02
2764 7481 5.861251 CAGAGAAACACTAGAGCAGTACAAG 59.139 44.000 0.00 0.00 34.98 3.16
2776 7493 4.893608 TGTTATGCTGCAGAGAAACACTA 58.106 39.130 20.43 0.00 0.00 2.74
2784 7501 6.018425 ACGAATCTAAATGTTATGCTGCAGAG 60.018 38.462 20.43 1.16 0.00 3.35
2798 7515 9.930693 CTTAAATAGGCTCCTACGAATCTAAAT 57.069 33.333 0.00 0.00 0.00 1.40
2799 7516 8.365647 CCTTAAATAGGCTCCTACGAATCTAAA 58.634 37.037 0.00 0.00 37.17 1.85
2852 7573 3.075283 TGGGGGAAAACTTGCTCAGATTA 59.925 43.478 0.00 0.00 0.00 1.75
2875 7596 5.008613 GCAAACTACAAGAGGTCAACAATGA 59.991 40.000 0.00 0.00 0.00 2.57
2913 7634 5.344743 AATAGACGCAAGAATCAGAGGAA 57.655 39.130 0.00 0.00 43.62 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.