Multiple sequence alignment - TraesCS6A01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G381200 chr6A 100.000 2738 0 0 1 2738 601135243 601132506 0.000000e+00 5057
1 TraesCS6A01G381200 chr6A 89.346 1192 85 14 591 1746 601006478 601005293 0.000000e+00 1459
2 TraesCS6A01G381200 chr6A 89.199 861 83 3 882 1742 221554036 221554886 0.000000e+00 1066
3 TraesCS6A01G381200 chr6A 90.506 316 21 6 2424 2737 601004233 601003925 2.540000e-110 409
4 TraesCS6A01G381200 chr6A 89.933 149 11 2 239 387 601006762 601006618 3.600000e-44 189
5 TraesCS6A01G381200 chr6A 88.235 119 10 4 1 119 93981859 93981745 3.680000e-29 139
6 TraesCS6A01G381200 chr6D 92.922 1427 78 11 332 1748 454685649 454687062 0.000000e+00 2054
7 TraesCS6A01G381200 chr6D 92.075 1325 85 12 431 1741 454801194 454799876 0.000000e+00 1847
8 TraesCS6A01G381200 chr6D 89.199 861 80 5 882 1742 162125764 162126611 0.000000e+00 1062
9 TraesCS6A01G381200 chr6D 89.583 432 29 10 2313 2737 454687628 454688050 4.010000e-148 534
10 TraesCS6A01G381200 chr6D 88.552 297 26 5 1991 2285 454799700 454799410 1.210000e-93 353
11 TraesCS6A01G381200 chr6D 93.750 96 6 0 1981 2076 454687062 454687157 7.900000e-31 145
12 TraesCS6A01G381200 chr6B 93.085 1316 84 4 431 1740 691750099 691748785 0.000000e+00 1919
13 TraesCS6A01G381200 chr6B 88.954 851 82 4 888 1738 300242604 300241766 0.000000e+00 1040
14 TraesCS6A01G381200 chr6B 85.627 327 34 6 118 433 691755199 691754875 5.650000e-87 331
15 TraesCS6A01G381200 chr6B 88.085 235 20 5 2048 2279 691748543 691748314 3.470000e-69 272
16 TraesCS6A01G381200 chr6B 88.136 118 13 1 1 118 493115644 493115760 3.680000e-29 139
17 TraesCS6A01G381200 chr5D 85.312 320 46 1 1081 1400 411785490 411785172 2.030000e-86 329
18 TraesCS6A01G381200 chr5D 86.400 125 15 2 1 124 44156929 44156806 4.760000e-28 135
19 TraesCS6A01G381200 chr5B 80.630 413 68 9 998 1407 494296626 494296223 2.650000e-80 309
20 TraesCS6A01G381200 chr7D 87.778 180 16 5 1750 1925 125491492 125491669 3.570000e-49 206
21 TraesCS6A01G381200 chr7D 89.916 119 9 3 1 118 21804651 21804535 1.700000e-32 150
22 TraesCS6A01G381200 chr7D 88.034 117 13 1 2 118 588407839 588407954 1.320000e-28 137
23 TraesCS6A01G381200 chr4A 89.831 118 11 1 1 118 735547523 735547639 1.700000e-32 150
24 TraesCS6A01G381200 chr7B 89.744 117 11 1 2 118 115356253 115356138 6.110000e-32 148
25 TraesCS6A01G381200 chr5A 90.351 114 9 2 2 115 537362855 537362966 6.110000e-32 148
26 TraesCS6A01G381200 chr1D 88.136 118 13 1 2 119 409013581 409013697 3.680000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G381200 chr6A 601132506 601135243 2737 True 5057.000000 5057 100.000000 1 2738 1 chr6A.!!$R2 2737
1 TraesCS6A01G381200 chr6A 221554036 221554886 850 False 1066.000000 1066 89.199000 882 1742 1 chr6A.!!$F1 860
2 TraesCS6A01G381200 chr6A 601003925 601006762 2837 True 685.666667 1459 89.928333 239 2737 3 chr6A.!!$R3 2498
3 TraesCS6A01G381200 chr6D 454799410 454801194 1784 True 1100.000000 1847 90.313500 431 2285 2 chr6D.!!$R1 1854
4 TraesCS6A01G381200 chr6D 162125764 162126611 847 False 1062.000000 1062 89.199000 882 1742 1 chr6D.!!$F1 860
5 TraesCS6A01G381200 chr6D 454685649 454688050 2401 False 911.000000 2054 92.085000 332 2737 3 chr6D.!!$F2 2405
6 TraesCS6A01G381200 chr6B 691748314 691750099 1785 True 1095.500000 1919 90.585000 431 2279 2 chr6B.!!$R3 1848
7 TraesCS6A01G381200 chr6B 300241766 300242604 838 True 1040.000000 1040 88.954000 888 1738 1 chr6B.!!$R1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.037232 CCTCCAGAAGGGACAACGAC 60.037 60.0 0.0 0.0 42.15 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1974 0.038744 AGAGCCAAACATGGTGGAGG 59.961 55.0 19.09 7.25 38.54 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.070262 GTGCTCCAAAACAATGCCTC 57.930 50.000 0.00 0.00 0.00 4.70
20 21 0.968405 TGCTCCAAAACAATGCCTCC 59.032 50.000 0.00 0.00 0.00 4.30
21 22 0.968405 GCTCCAAAACAATGCCTCCA 59.032 50.000 0.00 0.00 0.00 3.86
22 23 1.067354 GCTCCAAAACAATGCCTCCAG 60.067 52.381 0.00 0.00 0.00 3.86
23 24 2.517959 CTCCAAAACAATGCCTCCAGA 58.482 47.619 0.00 0.00 0.00 3.86
24 25 2.892852 CTCCAAAACAATGCCTCCAGAA 59.107 45.455 0.00 0.00 0.00 3.02
25 26 2.892852 TCCAAAACAATGCCTCCAGAAG 59.107 45.455 0.00 0.00 0.00 2.85
27 28 1.928868 AAACAATGCCTCCAGAAGGG 58.071 50.000 0.00 0.00 46.32 3.95
31 32 4.330056 TGCCTCCAGAAGGGACAA 57.670 55.556 0.00 0.00 46.32 3.18
32 33 1.761174 TGCCTCCAGAAGGGACAAC 59.239 57.895 0.00 0.00 46.32 3.32
33 34 1.376037 GCCTCCAGAAGGGACAACG 60.376 63.158 0.00 0.00 46.32 4.10
34 35 1.827399 GCCTCCAGAAGGGACAACGA 61.827 60.000 0.00 0.00 46.32 3.85
35 36 0.037232 CCTCCAGAAGGGACAACGAC 60.037 60.000 0.00 0.00 42.15 4.34
36 37 0.679505 CTCCAGAAGGGACAACGACA 59.320 55.000 0.00 0.00 42.15 4.35
37 38 1.276421 CTCCAGAAGGGACAACGACAT 59.724 52.381 0.00 0.00 42.15 3.06
38 39 1.275291 TCCAGAAGGGACAACGACATC 59.725 52.381 0.00 0.00 42.15 3.06
39 40 1.350193 CAGAAGGGACAACGACATCG 58.650 55.000 0.00 0.00 46.33 3.84
40 41 1.067846 CAGAAGGGACAACGACATCGA 60.068 52.381 8.54 0.00 43.02 3.59
41 42 1.616865 AGAAGGGACAACGACATCGAA 59.383 47.619 8.54 0.00 43.02 3.71
42 43 1.993370 GAAGGGACAACGACATCGAAG 59.007 52.381 8.54 2.43 43.02 3.79
43 44 1.254026 AGGGACAACGACATCGAAGA 58.746 50.000 8.54 0.00 43.02 2.87
44 45 1.825474 AGGGACAACGACATCGAAGAT 59.175 47.619 8.54 0.00 45.12 2.40
45 46 1.927174 GGGACAACGACATCGAAGATG 59.073 52.381 8.54 8.33 45.12 2.90
46 47 1.324736 GGACAACGACATCGAAGATGC 59.675 52.381 8.54 2.98 45.12 3.91
47 48 2.263077 GACAACGACATCGAAGATGCT 58.737 47.619 8.54 0.00 45.12 3.79
48 49 3.435566 GACAACGACATCGAAGATGCTA 58.564 45.455 8.54 0.00 45.12 3.49
49 50 4.045104 GACAACGACATCGAAGATGCTAT 58.955 43.478 8.54 0.00 45.12 2.97
50 51 4.045104 ACAACGACATCGAAGATGCTATC 58.955 43.478 8.54 0.57 45.12 2.08
51 52 3.990318 ACGACATCGAAGATGCTATCA 57.010 42.857 8.54 0.00 45.12 2.15
52 53 4.511617 ACGACATCGAAGATGCTATCAT 57.488 40.909 8.54 0.00 45.12 2.45
53 54 4.480541 ACGACATCGAAGATGCTATCATC 58.519 43.478 8.54 0.00 45.12 2.92
54 55 4.022849 ACGACATCGAAGATGCTATCATCA 60.023 41.667 8.54 0.00 45.45 3.07
55 56 4.323070 CGACATCGAAGATGCTATCATCAC 59.677 45.833 9.13 2.39 45.45 3.06
56 57 6.627172 CGACATCGAAGATGCTATCATCACC 61.627 48.000 9.13 0.00 45.45 4.02
62 63 2.898705 GATGCTATCATCACCCGATCC 58.101 52.381 1.65 0.00 46.44 3.36
63 64 0.603065 TGCTATCATCACCCGATCCG 59.397 55.000 0.00 0.00 0.00 4.18
64 65 5.834819 GATGCTATCATCACCCGATCCGG 62.835 56.522 0.00 0.00 46.44 5.14
65 66 1.257743 CTATCATCACCCGATCCGGT 58.742 55.000 0.00 0.00 46.80 5.28
66 67 2.443416 CTATCATCACCCGATCCGGTA 58.557 52.381 5.36 0.00 46.80 4.02
67 68 1.257743 ATCATCACCCGATCCGGTAG 58.742 55.000 5.36 1.64 46.80 3.18
68 69 0.184211 TCATCACCCGATCCGGTAGA 59.816 55.000 5.36 6.62 46.80 2.59
69 70 0.314302 CATCACCCGATCCGGTAGAC 59.686 60.000 5.36 0.00 46.80 2.59
70 71 0.826672 ATCACCCGATCCGGTAGACC 60.827 60.000 5.36 0.00 46.80 3.85
71 72 2.123554 ACCCGATCCGGTAGACCC 60.124 66.667 3.68 0.00 46.80 4.46
72 73 2.123597 CCCGATCCGGTAGACCCA 60.124 66.667 0.00 0.00 46.80 4.51
73 74 2.201022 CCCGATCCGGTAGACCCAG 61.201 68.421 0.00 0.00 46.80 4.45
74 75 1.152819 CCGATCCGGTAGACCCAGA 60.153 63.158 0.00 0.00 42.73 3.86
75 76 0.539901 CCGATCCGGTAGACCCAGAT 60.540 60.000 0.00 0.00 42.73 2.90
76 77 0.882474 CGATCCGGTAGACCCAGATC 59.118 60.000 0.00 13.07 38.22 2.75
77 78 1.545875 CGATCCGGTAGACCCAGATCT 60.546 57.143 17.79 0.00 38.87 2.75
78 79 2.290134 CGATCCGGTAGACCCAGATCTA 60.290 54.545 17.79 0.00 38.87 1.98
79 80 2.953284 TCCGGTAGACCCAGATCTAG 57.047 55.000 0.00 0.00 31.75 2.43
80 81 1.424302 TCCGGTAGACCCAGATCTAGG 59.576 57.143 5.55 5.55 31.75 3.02
103 104 4.760047 CCCCCGAAGCTCACACCG 62.760 72.222 0.00 0.00 0.00 4.94
104 105 4.003788 CCCCGAAGCTCACACCGT 62.004 66.667 0.00 0.00 0.00 4.83
105 106 2.432628 CCCGAAGCTCACACCGTC 60.433 66.667 0.00 0.00 0.00 4.79
106 107 2.805353 CCGAAGCTCACACCGTCG 60.805 66.667 0.00 0.00 34.70 5.12
107 108 3.470567 CGAAGCTCACACCGTCGC 61.471 66.667 0.00 0.00 0.00 5.19
108 109 3.112709 GAAGCTCACACCGTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
112 113 3.403057 CTCACACCGTCGCCGTTG 61.403 66.667 0.00 0.00 32.09 4.10
119 120 3.118454 CGTCGCCGTTGCTGGATT 61.118 61.111 0.00 0.00 34.43 3.01
120 121 1.807981 CGTCGCCGTTGCTGGATTA 60.808 57.895 0.00 0.00 34.43 1.75
121 122 1.151777 CGTCGCCGTTGCTGGATTAT 61.152 55.000 0.00 0.00 34.43 1.28
122 123 0.304705 GTCGCCGTTGCTGGATTATG 59.695 55.000 0.00 0.00 34.43 1.90
123 124 1.009675 CGCCGTTGCTGGATTATGC 60.010 57.895 0.00 0.00 34.43 3.14
124 125 1.439353 CGCCGTTGCTGGATTATGCT 61.439 55.000 0.00 0.00 34.43 3.79
125 126 0.740737 GCCGTTGCTGGATTATGCTT 59.259 50.000 0.00 0.00 33.53 3.91
126 127 1.268743 GCCGTTGCTGGATTATGCTTC 60.269 52.381 0.00 0.00 33.53 3.86
127 128 2.016318 CCGTTGCTGGATTATGCTTCA 58.984 47.619 0.00 0.00 0.00 3.02
128 129 2.032550 CCGTTGCTGGATTATGCTTCAG 59.967 50.000 0.00 0.00 0.00 3.02
129 130 2.032550 CGTTGCTGGATTATGCTTCAGG 59.967 50.000 0.00 0.00 0.00 3.86
130 131 3.019564 GTTGCTGGATTATGCTTCAGGT 58.980 45.455 0.00 0.00 0.00 4.00
131 132 3.370840 TGCTGGATTATGCTTCAGGTT 57.629 42.857 0.00 0.00 0.00 3.50
132 133 4.502105 TGCTGGATTATGCTTCAGGTTA 57.498 40.909 0.00 0.00 0.00 2.85
133 134 5.052693 TGCTGGATTATGCTTCAGGTTAT 57.947 39.130 0.00 0.00 0.00 1.89
134 135 6.186420 TGCTGGATTATGCTTCAGGTTATA 57.814 37.500 0.00 0.00 0.00 0.98
135 136 6.782986 TGCTGGATTATGCTTCAGGTTATAT 58.217 36.000 0.00 0.00 0.00 0.86
136 137 7.917003 TGCTGGATTATGCTTCAGGTTATATA 58.083 34.615 0.00 0.00 0.00 0.86
137 138 8.551440 TGCTGGATTATGCTTCAGGTTATATAT 58.449 33.333 0.00 0.00 0.00 0.86
138 139 9.050601 GCTGGATTATGCTTCAGGTTATATATC 57.949 37.037 0.00 0.00 0.00 1.63
143 144 9.964354 ATTATGCTTCAGGTTATATATCTTGCA 57.036 29.630 0.00 0.00 0.00 4.08
144 145 9.791801 TTATGCTTCAGGTTATATATCTTGCAA 57.208 29.630 0.00 0.00 0.00 4.08
145 146 7.496529 TGCTTCAGGTTATATATCTTGCAAC 57.503 36.000 0.00 0.00 0.00 4.17
146 147 6.486657 TGCTTCAGGTTATATATCTTGCAACC 59.513 38.462 0.00 6.32 39.15 3.77
147 148 6.486657 GCTTCAGGTTATATATCTTGCAACCA 59.513 38.462 14.13 0.00 40.92 3.67
148 149 7.520614 GCTTCAGGTTATATATCTTGCAACCAC 60.521 40.741 14.13 0.00 40.92 4.16
149 150 6.894682 TCAGGTTATATATCTTGCAACCACA 58.105 36.000 14.13 1.11 40.92 4.17
150 151 7.517320 TCAGGTTATATATCTTGCAACCACAT 58.483 34.615 14.13 0.00 40.92 3.21
151 152 8.655901 TCAGGTTATATATCTTGCAACCACATA 58.344 33.333 14.13 0.00 40.92 2.29
152 153 8.939929 CAGGTTATATATCTTGCAACCACATAG 58.060 37.037 14.13 0.00 40.92 2.23
153 154 8.660435 AGGTTATATATCTTGCAACCACATAGT 58.340 33.333 14.13 0.00 40.92 2.12
154 155 9.284968 GGTTATATATCTTGCAACCACATAGTT 57.715 33.333 8.79 0.00 38.79 2.24
170 171 7.005062 CACATAGTTGTGTATCTGGTTTAGC 57.995 40.000 0.00 0.00 46.68 3.09
171 172 6.593770 CACATAGTTGTGTATCTGGTTTAGCA 59.406 38.462 0.00 0.00 46.68 3.49
172 173 6.594159 ACATAGTTGTGTATCTGGTTTAGCAC 59.406 38.462 0.00 0.00 33.85 4.40
173 174 4.968259 AGTTGTGTATCTGGTTTAGCACA 58.032 39.130 0.00 0.00 35.43 4.57
174 175 5.373222 AGTTGTGTATCTGGTTTAGCACAA 58.627 37.500 0.00 0.00 42.23 3.33
175 176 5.825679 AGTTGTGTATCTGGTTTAGCACAAA 59.174 36.000 9.08 0.00 44.71 2.83
176 177 6.490040 AGTTGTGTATCTGGTTTAGCACAAAT 59.510 34.615 9.08 6.02 44.71 2.32
177 178 6.892658 TGTGTATCTGGTTTAGCACAAATT 57.107 33.333 0.00 0.00 34.49 1.82
178 179 6.676950 TGTGTATCTGGTTTAGCACAAATTG 58.323 36.000 0.00 0.00 34.49 2.32
179 180 6.264292 TGTGTATCTGGTTTAGCACAAATTGT 59.736 34.615 0.00 0.00 34.49 2.71
180 181 7.445707 TGTGTATCTGGTTTAGCACAAATTGTA 59.554 33.333 0.00 0.00 34.49 2.41
181 182 7.962918 GTGTATCTGGTTTAGCACAAATTGTAG 59.037 37.037 0.00 0.00 0.00 2.74
182 183 5.957842 TCTGGTTTAGCACAAATTGTAGG 57.042 39.130 0.00 0.00 0.00 3.18
183 184 5.381757 TCTGGTTTAGCACAAATTGTAGGT 58.618 37.500 0.00 2.20 0.00 3.08
184 185 5.240623 TCTGGTTTAGCACAAATTGTAGGTG 59.759 40.000 0.00 0.00 35.68 4.00
192 193 5.627499 CACAAATTGTAGGTGCACATAGT 57.373 39.130 20.43 6.10 0.00 2.12
193 194 6.012658 CACAAATTGTAGGTGCACATAGTT 57.987 37.500 20.43 8.39 0.00 2.24
194 195 7.139896 CACAAATTGTAGGTGCACATAGTTA 57.860 36.000 20.43 4.44 0.00 2.24
195 196 7.589395 CACAAATTGTAGGTGCACATAGTTAA 58.411 34.615 20.43 11.61 0.00 2.01
196 197 8.079203 CACAAATTGTAGGTGCACATAGTTAAA 58.921 33.333 20.43 8.54 0.00 1.52
197 198 8.079809 ACAAATTGTAGGTGCACATAGTTAAAC 58.920 33.333 20.43 6.01 0.00 2.01
198 199 6.753107 ATTGTAGGTGCACATAGTTAAACC 57.247 37.500 20.43 2.60 0.00 3.27
199 200 5.492855 TGTAGGTGCACATAGTTAAACCT 57.507 39.130 20.43 4.72 40.95 3.50
200 201 5.242434 TGTAGGTGCACATAGTTAAACCTG 58.758 41.667 20.43 0.00 38.47 4.00
201 202 3.686016 AGGTGCACATAGTTAAACCTGG 58.314 45.455 20.43 0.00 36.68 4.45
202 203 3.073946 AGGTGCACATAGTTAAACCTGGT 59.926 43.478 20.43 0.00 36.68 4.00
203 204 4.287585 AGGTGCACATAGTTAAACCTGGTA 59.712 41.667 20.43 0.00 36.68 3.25
204 205 5.045140 AGGTGCACATAGTTAAACCTGGTAT 60.045 40.000 20.43 0.00 36.68 2.73
205 206 6.157297 AGGTGCACATAGTTAAACCTGGTATA 59.843 38.462 20.43 0.00 36.68 1.47
206 207 6.259387 GGTGCACATAGTTAAACCTGGTATAC 59.741 42.308 20.43 0.00 0.00 1.47
207 208 7.046033 GTGCACATAGTTAAACCTGGTATACT 58.954 38.462 13.17 6.70 0.00 2.12
208 209 7.551617 GTGCACATAGTTAAACCTGGTATACTT 59.448 37.037 13.17 0.00 0.00 2.24
209 210 8.760735 TGCACATAGTTAAACCTGGTATACTTA 58.239 33.333 0.00 0.00 0.00 2.24
210 211 9.257651 GCACATAGTTAAACCTGGTATACTTAG 57.742 37.037 0.00 2.12 0.00 2.18
220 221 8.953368 AACCTGGTATACTTAGTTTTATTCCG 57.047 34.615 0.00 0.00 0.00 4.30
221 222 6.988580 ACCTGGTATACTTAGTTTTATTCCGC 59.011 38.462 0.00 0.00 0.00 5.54
222 223 6.987992 CCTGGTATACTTAGTTTTATTCCGCA 59.012 38.462 2.25 0.00 0.00 5.69
223 224 7.660208 CCTGGTATACTTAGTTTTATTCCGCAT 59.340 37.037 2.25 0.00 0.00 4.73
224 225 8.967664 TGGTATACTTAGTTTTATTCCGCATT 57.032 30.769 2.25 0.00 0.00 3.56
225 226 9.398538 TGGTATACTTAGTTTTATTCCGCATTT 57.601 29.630 2.25 0.00 0.00 2.32
234 235 8.642908 AGTTTTATTCCGCATTTATTTAAGCC 57.357 30.769 0.00 0.00 0.00 4.35
235 236 8.474831 AGTTTTATTCCGCATTTATTTAAGCCT 58.525 29.630 0.00 0.00 0.00 4.58
236 237 9.738832 GTTTTATTCCGCATTTATTTAAGCCTA 57.261 29.630 0.00 0.00 0.00 3.93
237 238 9.959749 TTTTATTCCGCATTTATTTAAGCCTAG 57.040 29.630 0.00 0.00 0.00 3.02
244 245 5.758784 GCATTTATTTAAGCCTAGACGTCCT 59.241 40.000 13.01 0.00 0.00 3.85
262 263 1.193323 CTGTGAGCAGGGAGATGACT 58.807 55.000 0.00 0.00 39.01 3.41
286 287 3.723348 GCTGCCGGTTGTCGTTCC 61.723 66.667 1.90 0.00 37.11 3.62
290 291 2.946752 GCCGGTTGTCGTTCCGTTC 61.947 63.158 1.90 0.00 44.51 3.95
304 305 1.811965 TCCGTTCGTTCGACCATAAGA 59.188 47.619 0.00 0.00 0.00 2.10
305 306 2.228582 TCCGTTCGTTCGACCATAAGAA 59.771 45.455 0.00 0.00 0.00 2.52
306 307 2.597305 CCGTTCGTTCGACCATAAGAAG 59.403 50.000 0.00 0.00 0.00 2.85
312 313 3.467803 GTTCGACCATAAGAAGGGATGG 58.532 50.000 0.00 0.00 46.88 3.51
367 368 9.416794 CTGAGATTCGTGCTAATAATCTAATGT 57.583 33.333 0.00 0.00 39.46 2.71
445 446 6.816140 TGTTTTCAATAGATACTGACATGCGA 59.184 34.615 0.00 0.00 0.00 5.10
532 539 0.112218 TTGCCACCACTATGCCAGTT 59.888 50.000 0.00 0.00 34.26 3.16
559 566 4.357947 ACGAGTCACGCGTGGCAT 62.358 61.111 41.12 27.49 46.94 4.40
560 567 3.545481 CGAGTCACGCGTGGCATC 61.545 66.667 41.12 31.46 37.73 3.91
707 725 1.582502 GACGTTTCGGATAGCGACTTG 59.417 52.381 0.00 0.00 0.00 3.16
742 760 3.120105 CTGGCGGCTACGATCAGA 58.880 61.111 11.43 0.00 44.60 3.27
766 784 1.078759 CTAGACCAAGCCGCGTCTTG 61.079 60.000 22.18 22.18 39.92 3.02
810 831 0.317436 CGTAAGCTGCGTTGCCAAAA 60.317 50.000 0.00 0.00 0.00 2.44
820 841 0.524604 GTTGCCAAAACGCGTCTTGT 60.525 50.000 22.63 0.00 0.00 3.16
912 933 2.137425 TACGCACACGCACTAGCACT 62.137 55.000 0.00 0.00 45.53 4.40
917 938 0.038526 ACACGCACTAGCACTACACC 60.039 55.000 0.00 0.00 42.27 4.16
972 1015 2.224161 GCCTCAAGCTAGATACCACCAG 60.224 54.545 0.00 0.00 38.99 4.00
982 1025 2.044806 ATACCACCAGCGAGCCATCC 62.045 60.000 0.00 0.00 0.00 3.51
1016 1063 1.227764 CCATGGACATGAGCCTCGG 60.228 63.158 5.56 1.81 41.20 4.63
1043 1099 2.355193 GCTCTGCCTCCTCCTCGTT 61.355 63.158 0.00 0.00 0.00 3.85
1353 1409 4.489771 CCGCCCGCCTTCTCCAAT 62.490 66.667 0.00 0.00 0.00 3.16
1540 1596 2.229784 GGTGATGCCACTTTTGAAGAGG 59.770 50.000 0.51 0.51 42.77 3.69
1683 1739 2.046604 GGGGCGTACTGGGACAAC 60.047 66.667 0.00 0.00 38.70 3.32
1744 1800 4.639310 CGCTCTGGAGTTACTAGGACTTTA 59.361 45.833 0.00 0.00 0.00 1.85
1746 1802 6.508777 GCTCTGGAGTTACTAGGACTTTATG 58.491 44.000 0.00 0.00 0.00 1.90
1749 1805 7.837863 TCTGGAGTTACTAGGACTTTATGTTG 58.162 38.462 0.00 0.00 0.00 3.33
1751 1807 6.727231 TGGAGTTACTAGGACTTTATGTTGGA 59.273 38.462 0.00 0.00 0.00 3.53
1753 1809 7.123847 GGAGTTACTAGGACTTTATGTTGGAGA 59.876 40.741 0.00 0.00 0.00 3.71
1754 1810 8.068892 AGTTACTAGGACTTTATGTTGGAGAG 57.931 38.462 0.00 0.00 0.00 3.20
1755 1811 7.894364 AGTTACTAGGACTTTATGTTGGAGAGA 59.106 37.037 0.00 0.00 0.00 3.10
1756 1812 8.697292 GTTACTAGGACTTTATGTTGGAGAGAT 58.303 37.037 0.00 0.00 0.00 2.75
1757 1813 9.931698 TTACTAGGACTTTATGTTGGAGAGATA 57.068 33.333 0.00 0.00 0.00 1.98
1758 1814 8.472007 ACTAGGACTTTATGTTGGAGAGATAG 57.528 38.462 0.00 0.00 0.00 2.08
1759 1815 8.062536 ACTAGGACTTTATGTTGGAGAGATAGT 58.937 37.037 0.00 0.00 0.00 2.12
1760 1816 7.118496 AGGACTTTATGTTGGAGAGATAGTG 57.882 40.000 0.00 0.00 0.00 2.74
1761 1817 6.670027 AGGACTTTATGTTGGAGAGATAGTGT 59.330 38.462 0.00 0.00 0.00 3.55
1762 1818 7.839705 AGGACTTTATGTTGGAGAGATAGTGTA 59.160 37.037 0.00 0.00 0.00 2.90
1763 1819 8.475639 GGACTTTATGTTGGAGAGATAGTGTAA 58.524 37.037 0.00 0.00 0.00 2.41
1764 1820 9.522804 GACTTTATGTTGGAGAGATAGTGTAAG 57.477 37.037 0.00 0.00 0.00 2.34
1766 1822 5.939764 ATGTTGGAGAGATAGTGTAAGCA 57.060 39.130 0.00 0.00 0.00 3.91
1767 1823 5.738619 TGTTGGAGAGATAGTGTAAGCAA 57.261 39.130 0.00 0.00 0.00 3.91
1769 1825 5.011635 TGTTGGAGAGATAGTGTAAGCAACA 59.988 40.000 0.00 0.00 35.06 3.33
1779 1835 2.489971 TGTAAGCAACACCTAGTGTGC 58.510 47.619 0.33 7.50 46.79 4.57
1783 1845 2.374184 AGCAACACCTAGTGTGCAAAA 58.626 42.857 17.97 0.00 46.79 2.44
1785 1847 3.384467 AGCAACACCTAGTGTGCAAAAAT 59.616 39.130 17.97 0.00 46.79 1.82
1811 1873 4.970662 AAAAATCAGTGACATCCATCGG 57.029 40.909 0.00 0.00 0.00 4.18
1812 1874 3.912496 AAATCAGTGACATCCATCGGA 57.088 42.857 0.00 0.00 35.55 4.55
1813 1875 4.428294 AAATCAGTGACATCCATCGGAT 57.572 40.909 0.00 0.00 44.21 4.18
1815 1877 3.912496 TCAGTGACATCCATCGGATTT 57.088 42.857 0.00 0.00 39.79 2.17
1816 1878 4.220693 TCAGTGACATCCATCGGATTTT 57.779 40.909 0.00 0.00 39.79 1.82
1818 1880 3.940852 CAGTGACATCCATCGGATTTTCA 59.059 43.478 0.00 0.00 39.79 2.69
1819 1881 4.395854 CAGTGACATCCATCGGATTTTCAA 59.604 41.667 5.89 0.00 39.79 2.69
1820 1882 5.066893 CAGTGACATCCATCGGATTTTCAAT 59.933 40.000 5.89 3.22 39.79 2.57
1821 1883 5.066893 AGTGACATCCATCGGATTTTCAATG 59.933 40.000 5.89 0.00 39.79 2.82
1822 1884 4.338964 TGACATCCATCGGATTTTCAATGG 59.661 41.667 0.00 0.00 39.79 3.16
1826 1888 4.535781 TCCATCGGATTTTCAATGGATGT 58.464 39.130 0.00 0.00 42.05 3.06
1827 1889 4.580167 TCCATCGGATTTTCAATGGATGTC 59.420 41.667 0.00 0.00 42.05 3.06
1828 1890 4.581824 CCATCGGATTTTCAATGGATGTCT 59.418 41.667 0.00 0.00 40.98 3.41
1830 1892 4.842574 TCGGATTTTCAATGGATGTCTCA 58.157 39.130 0.00 0.00 0.00 3.27
1831 1893 4.877823 TCGGATTTTCAATGGATGTCTCAG 59.122 41.667 0.00 0.00 0.00 3.35
1832 1894 4.877823 CGGATTTTCAATGGATGTCTCAGA 59.122 41.667 0.00 0.00 0.00 3.27
1833 1895 5.530171 CGGATTTTCAATGGATGTCTCAGAT 59.470 40.000 0.00 0.00 0.00 2.90
1834 1896 6.039047 CGGATTTTCAATGGATGTCTCAGATT 59.961 38.462 0.00 0.00 0.00 2.40
1835 1897 7.424001 GGATTTTCAATGGATGTCTCAGATTC 58.576 38.462 0.00 0.00 0.00 2.52
1836 1898 7.067859 GGATTTTCAATGGATGTCTCAGATTCA 59.932 37.037 0.00 0.00 0.00 2.57
1837 1899 7.764141 TTTTCAATGGATGTCTCAGATTCAA 57.236 32.000 0.00 0.00 0.00 2.69
1838 1900 7.949690 TTTCAATGGATGTCTCAGATTCAAT 57.050 32.000 0.00 0.00 0.00 2.57
1839 1901 6.937436 TCAATGGATGTCTCAGATTCAATG 57.063 37.500 0.00 0.00 0.00 2.82
1840 1902 5.298527 TCAATGGATGTCTCAGATTCAATGC 59.701 40.000 0.00 0.00 0.00 3.56
1841 1903 4.224991 TGGATGTCTCAGATTCAATGCA 57.775 40.909 0.00 0.00 0.00 3.96
1842 1904 4.788679 TGGATGTCTCAGATTCAATGCAT 58.211 39.130 0.00 0.00 0.00 3.96
1843 1905 4.820173 TGGATGTCTCAGATTCAATGCATC 59.180 41.667 0.00 0.00 0.00 3.91
1844 1906 4.083961 GGATGTCTCAGATTCAATGCATCG 60.084 45.833 0.00 0.00 34.16 3.84
1845 1907 3.200483 TGTCTCAGATTCAATGCATCGG 58.800 45.455 0.00 0.00 0.00 4.18
1846 1908 2.547211 GTCTCAGATTCAATGCATCGGG 59.453 50.000 0.00 0.00 0.00 5.14
1847 1909 2.435437 TCTCAGATTCAATGCATCGGGA 59.565 45.455 0.00 0.00 0.00 5.14
1848 1910 3.118298 TCTCAGATTCAATGCATCGGGAA 60.118 43.478 0.00 5.25 0.00 3.97
1849 1911 3.819337 CTCAGATTCAATGCATCGGGAAT 59.181 43.478 16.52 16.52 32.97 3.01
1850 1912 4.209538 TCAGATTCAATGCATCGGGAATT 58.790 39.130 17.22 8.76 30.60 2.17
1851 1913 4.037089 TCAGATTCAATGCATCGGGAATTG 59.963 41.667 17.22 16.06 30.60 2.32
1852 1914 3.319972 AGATTCAATGCATCGGGAATTGG 59.680 43.478 17.22 0.00 33.14 3.16
1853 1915 2.142356 TCAATGCATCGGGAATTGGT 57.858 45.000 0.00 0.00 33.14 3.67
1854 1916 1.750206 TCAATGCATCGGGAATTGGTG 59.250 47.619 0.00 0.00 33.14 4.17
1855 1917 1.113788 AATGCATCGGGAATTGGTGG 58.886 50.000 0.00 0.00 0.00 4.61
1856 1918 0.258484 ATGCATCGGGAATTGGTGGA 59.742 50.000 0.00 0.00 0.00 4.02
1857 1919 0.038890 TGCATCGGGAATTGGTGGAA 59.961 50.000 0.00 0.00 0.00 3.53
1858 1920 0.455815 GCATCGGGAATTGGTGGAAC 59.544 55.000 0.00 0.00 0.00 3.62
1859 1921 1.955208 GCATCGGGAATTGGTGGAACT 60.955 52.381 0.00 0.00 36.74 3.01
1860 1922 2.446435 CATCGGGAATTGGTGGAACTT 58.554 47.619 0.00 0.00 36.74 2.66
1861 1923 2.194201 TCGGGAATTGGTGGAACTTC 57.806 50.000 0.00 0.00 36.74 3.01
1862 1924 1.702957 TCGGGAATTGGTGGAACTTCT 59.297 47.619 0.00 0.00 36.74 2.85
1863 1925 1.812571 CGGGAATTGGTGGAACTTCTG 59.187 52.381 0.00 0.00 36.74 3.02
1864 1926 2.814097 CGGGAATTGGTGGAACTTCTGT 60.814 50.000 0.00 0.00 36.74 3.41
1865 1927 2.558359 GGGAATTGGTGGAACTTCTGTG 59.442 50.000 0.00 0.00 36.74 3.66
1866 1928 2.029918 GGAATTGGTGGAACTTCTGTGC 60.030 50.000 0.00 0.00 36.74 4.57
1867 1929 2.363306 ATTGGTGGAACTTCTGTGCA 57.637 45.000 0.00 0.00 36.74 4.57
1868 1930 2.363306 TTGGTGGAACTTCTGTGCAT 57.637 45.000 0.00 0.00 36.74 3.96
1869 1931 2.363306 TGGTGGAACTTCTGTGCATT 57.637 45.000 0.00 0.00 36.74 3.56
1870 1932 2.665165 TGGTGGAACTTCTGTGCATTT 58.335 42.857 0.00 0.00 36.74 2.32
1871 1933 3.030291 TGGTGGAACTTCTGTGCATTTT 58.970 40.909 0.00 0.00 36.74 1.82
1872 1934 4.211125 TGGTGGAACTTCTGTGCATTTTA 58.789 39.130 0.00 0.00 36.74 1.52
1873 1935 4.832266 TGGTGGAACTTCTGTGCATTTTAT 59.168 37.500 0.00 0.00 36.74 1.40
1874 1936 5.163513 GGTGGAACTTCTGTGCATTTTATG 58.836 41.667 0.00 0.00 36.74 1.90
1875 1937 5.163513 GTGGAACTTCTGTGCATTTTATGG 58.836 41.667 0.00 0.00 0.00 2.74
1876 1938 5.048083 GTGGAACTTCTGTGCATTTTATGGA 60.048 40.000 0.00 0.00 0.00 3.41
1877 1939 5.538053 TGGAACTTCTGTGCATTTTATGGAA 59.462 36.000 0.00 0.00 30.45 3.53
1878 1940 6.041409 TGGAACTTCTGTGCATTTTATGGAAA 59.959 34.615 0.00 0.00 30.45 3.13
1879 1941 6.366061 GGAACTTCTGTGCATTTTATGGAAAC 59.634 38.462 0.00 0.00 30.45 2.78
1880 1942 5.783111 ACTTCTGTGCATTTTATGGAAACC 58.217 37.500 0.00 0.00 30.45 3.27
1881 1943 4.799564 TCTGTGCATTTTATGGAAACCC 57.200 40.909 0.00 0.00 30.45 4.11
1882 1944 3.513515 TCTGTGCATTTTATGGAAACCCC 59.486 43.478 0.00 0.00 30.45 4.95
1883 1945 2.569404 TGTGCATTTTATGGAAACCCCC 59.431 45.455 0.00 0.00 30.45 5.40
1884 1946 2.837591 GTGCATTTTATGGAAACCCCCT 59.162 45.455 0.00 0.00 30.45 4.79
1885 1947 3.263170 GTGCATTTTATGGAAACCCCCTT 59.737 43.478 0.00 0.00 30.45 3.95
1886 1948 3.262915 TGCATTTTATGGAAACCCCCTTG 59.737 43.478 0.00 0.00 0.00 3.61
1887 1949 3.517500 GCATTTTATGGAAACCCCCTTGA 59.482 43.478 0.00 0.00 0.00 3.02
1888 1950 4.622933 GCATTTTATGGAAACCCCCTTGAC 60.623 45.833 0.00 0.00 0.00 3.18
1889 1951 4.479156 TTTTATGGAAACCCCCTTGACT 57.521 40.909 0.00 0.00 0.00 3.41
1890 1952 5.602291 TTTTATGGAAACCCCCTTGACTA 57.398 39.130 0.00 0.00 0.00 2.59
1891 1953 5.602291 TTTATGGAAACCCCCTTGACTAA 57.398 39.130 0.00 0.00 0.00 2.24
1892 1954 5.806955 TTATGGAAACCCCCTTGACTAAT 57.193 39.130 0.00 0.00 0.00 1.73
1893 1955 6.911993 TTATGGAAACCCCCTTGACTAATA 57.088 37.500 0.00 0.00 0.00 0.98
1894 1956 4.855298 TGGAAACCCCCTTGACTAATAG 57.145 45.455 0.00 0.00 0.00 1.73
1895 1957 4.180723 TGGAAACCCCCTTGACTAATAGT 58.819 43.478 0.00 0.00 0.00 2.12
1896 1958 4.226620 TGGAAACCCCCTTGACTAATAGTC 59.773 45.833 13.20 13.20 45.26 2.59
1919 1981 6.486993 GTCATGTATAAAAAGATCCCTCCACC 59.513 42.308 0.00 0.00 0.00 4.61
1940 2067 3.558505 CATGTTTGGCTCTTCTTCGTTG 58.441 45.455 0.00 0.00 0.00 4.10
1941 2068 2.912771 TGTTTGGCTCTTCTTCGTTGA 58.087 42.857 0.00 0.00 0.00 3.18
1943 2070 2.872858 GTTTGGCTCTTCTTCGTTGAGT 59.127 45.455 0.00 0.00 0.00 3.41
1944 2071 2.440539 TGGCTCTTCTTCGTTGAGTC 57.559 50.000 0.00 0.00 33.51 3.36
1946 2073 2.029828 TGGCTCTTCTTCGTTGAGTCTC 60.030 50.000 0.00 0.00 33.99 3.36
1947 2074 2.601804 GCTCTTCTTCGTTGAGTCTCC 58.398 52.381 0.00 0.00 0.00 3.71
1948 2075 2.230266 GCTCTTCTTCGTTGAGTCTCCT 59.770 50.000 0.00 0.00 0.00 3.69
1949 2076 3.672241 GCTCTTCTTCGTTGAGTCTCCTC 60.672 52.174 0.00 0.00 38.27 3.71
1950 2077 3.487372 TCTTCTTCGTTGAGTCTCCTCA 58.513 45.455 0.00 0.00 45.95 3.86
1960 2092 3.510459 TGAGTCTCCTCATTCCTTGTCA 58.490 45.455 0.00 0.00 42.80 3.58
1965 2097 1.354368 TCCTCATTCCTTGTCAACCCC 59.646 52.381 0.00 0.00 0.00 4.95
1967 2099 1.355720 CTCATTCCTTGTCAACCCCCT 59.644 52.381 0.00 0.00 0.00 4.79
1968 2100 1.786441 TCATTCCTTGTCAACCCCCTT 59.214 47.619 0.00 0.00 0.00 3.95
1969 2101 2.178984 TCATTCCTTGTCAACCCCCTTT 59.821 45.455 0.00 0.00 0.00 3.11
1970 2102 2.080654 TTCCTTGTCAACCCCCTTTG 57.919 50.000 0.00 0.00 0.00 2.77
2292 2892 9.668497 GATGACTATTACTATAAATCAACCCCC 57.332 37.037 0.00 0.00 0.00 5.40
2293 2893 8.808240 TGACTATTACTATAAATCAACCCCCT 57.192 34.615 0.00 0.00 0.00 4.79
2294 2894 8.656806 TGACTATTACTATAAATCAACCCCCTG 58.343 37.037 0.00 0.00 0.00 4.45
2295 2895 7.459234 ACTATTACTATAAATCAACCCCCTGC 58.541 38.462 0.00 0.00 0.00 4.85
2296 2896 5.718801 TTACTATAAATCAACCCCCTGCA 57.281 39.130 0.00 0.00 0.00 4.41
2297 2897 4.601406 ACTATAAATCAACCCCCTGCAA 57.399 40.909 0.00 0.00 0.00 4.08
2298 2898 4.941713 ACTATAAATCAACCCCCTGCAAA 58.058 39.130 0.00 0.00 0.00 3.68
2299 2899 5.337788 ACTATAAATCAACCCCCTGCAAAA 58.662 37.500 0.00 0.00 0.00 2.44
2300 2900 5.782845 ACTATAAATCAACCCCCTGCAAAAA 59.217 36.000 0.00 0.00 0.00 1.94
2413 3018 8.779303 TGTTTTACGCTATTTTCTCTGATTTCA 58.221 29.630 0.00 0.00 0.00 2.69
2461 3500 4.823989 AGCAATGTCTAGCAACTTGAAACT 59.176 37.500 0.00 0.00 0.00 2.66
2664 3707 9.139734 AGCATGAAATTATGATGGTCAAACTAT 57.860 29.630 0.00 0.00 0.00 2.12
2678 3722 7.630082 TGGTCAAACTATACCTTATGCTTTCT 58.370 34.615 0.00 0.00 36.67 2.52
2724 3768 5.529060 GGCAACTCCATTCTTTAGTAGATGG 59.471 44.000 0.00 0.00 35.01 3.51
2737 3781 4.585955 AGTAGATGGTATGTAAGCGTGG 57.414 45.455 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.337167 GGAGGCATTGTTTTGGAGCAC 60.337 52.381 0.00 0.00 0.00 4.40
1 2 0.968405 GGAGGCATTGTTTTGGAGCA 59.032 50.000 0.00 0.00 0.00 4.26
2 3 0.968405 TGGAGGCATTGTTTTGGAGC 59.032 50.000 0.00 0.00 0.00 4.70
3 4 2.517959 TCTGGAGGCATTGTTTTGGAG 58.482 47.619 0.00 0.00 0.00 3.86
4 5 2.673775 TCTGGAGGCATTGTTTTGGA 57.326 45.000 0.00 0.00 0.00 3.53
5 6 2.028748 CCTTCTGGAGGCATTGTTTTGG 60.029 50.000 0.00 0.00 39.09 3.28
6 7 2.028748 CCCTTCTGGAGGCATTGTTTTG 60.029 50.000 0.00 0.00 44.85 2.44
7 8 2.158325 TCCCTTCTGGAGGCATTGTTTT 60.158 45.455 0.00 0.00 44.85 2.43
8 9 1.428912 TCCCTTCTGGAGGCATTGTTT 59.571 47.619 0.00 0.00 44.85 2.83
9 10 1.075601 TCCCTTCTGGAGGCATTGTT 58.924 50.000 0.00 0.00 44.85 2.83
10 11 0.329596 GTCCCTTCTGGAGGCATTGT 59.670 55.000 0.00 0.00 46.38 2.71
11 12 0.329261 TGTCCCTTCTGGAGGCATTG 59.671 55.000 0.00 0.00 46.38 2.82
12 13 1.075601 TTGTCCCTTCTGGAGGCATT 58.924 50.000 0.00 0.00 46.38 3.56
13 14 0.329596 GTTGTCCCTTCTGGAGGCAT 59.670 55.000 0.00 0.00 46.38 4.40
14 15 1.761174 GTTGTCCCTTCTGGAGGCA 59.239 57.895 0.00 0.00 46.38 4.75
15 16 1.376037 CGTTGTCCCTTCTGGAGGC 60.376 63.158 0.00 0.00 46.38 4.70
16 17 0.037232 GTCGTTGTCCCTTCTGGAGG 60.037 60.000 0.00 0.00 46.38 4.30
17 18 0.679505 TGTCGTTGTCCCTTCTGGAG 59.320 55.000 0.00 0.00 46.38 3.86
18 19 1.275291 GATGTCGTTGTCCCTTCTGGA 59.725 52.381 0.00 0.00 42.41 3.86
19 20 1.726853 GATGTCGTTGTCCCTTCTGG 58.273 55.000 0.00 0.00 0.00 3.86
20 21 1.067846 TCGATGTCGTTGTCCCTTCTG 60.068 52.381 2.04 0.00 40.80 3.02
21 22 1.254026 TCGATGTCGTTGTCCCTTCT 58.746 50.000 2.04 0.00 40.80 2.85
22 23 1.993370 CTTCGATGTCGTTGTCCCTTC 59.007 52.381 2.04 0.00 40.80 3.46
23 24 1.616865 TCTTCGATGTCGTTGTCCCTT 59.383 47.619 2.04 0.00 40.80 3.95
24 25 1.254026 TCTTCGATGTCGTTGTCCCT 58.746 50.000 2.04 0.00 40.80 4.20
25 26 1.927174 CATCTTCGATGTCGTTGTCCC 59.073 52.381 2.04 0.00 40.80 4.46
26 27 1.324736 GCATCTTCGATGTCGTTGTCC 59.675 52.381 2.04 0.00 40.80 4.02
27 28 2.263077 AGCATCTTCGATGTCGTTGTC 58.737 47.619 2.04 0.00 40.80 3.18
28 29 2.370281 AGCATCTTCGATGTCGTTGT 57.630 45.000 2.04 0.00 40.80 3.32
29 30 4.044426 TGATAGCATCTTCGATGTCGTTG 58.956 43.478 2.04 0.00 40.80 4.10
30 31 4.307443 TGATAGCATCTTCGATGTCGTT 57.693 40.909 2.04 0.00 40.80 3.85
31 32 3.990318 TGATAGCATCTTCGATGTCGT 57.010 42.857 2.04 0.00 40.80 4.34
42 43 5.834819 CCGGATCGGGTGATGATAGCATC 62.835 56.522 14.09 14.09 45.68 3.91
43 44 1.205655 CGGATCGGGTGATGATAGCAT 59.794 52.381 0.00 0.00 34.09 3.79
44 45 0.603065 CGGATCGGGTGATGATAGCA 59.397 55.000 0.00 0.00 34.09 3.49
45 46 0.108615 CCGGATCGGGTGATGATAGC 60.109 60.000 11.10 0.00 44.15 2.97
62 63 1.912417 CCCTAGATCTGGGTCTACCG 58.088 60.000 22.42 3.59 44.64 4.02
86 87 4.760047 CGGTGTGAGCTTCGGGGG 62.760 72.222 0.00 0.00 0.00 5.40
87 88 3.934391 GACGGTGTGAGCTTCGGGG 62.934 68.421 0.00 0.00 0.00 5.73
88 89 2.432628 GACGGTGTGAGCTTCGGG 60.433 66.667 0.00 0.00 0.00 5.14
89 90 2.805353 CGACGGTGTGAGCTTCGG 60.805 66.667 0.00 0.00 0.00 4.30
90 91 3.470567 GCGACGGTGTGAGCTTCG 61.471 66.667 0.00 0.00 0.00 3.79
91 92 3.112709 GGCGACGGTGTGAGCTTC 61.113 66.667 0.00 0.00 0.00 3.86
106 107 0.740737 AAGCATAATCCAGCAACGGC 59.259 50.000 0.00 0.00 41.61 5.68
107 108 2.016318 TGAAGCATAATCCAGCAACGG 58.984 47.619 0.00 0.00 0.00 4.44
108 109 2.032550 CCTGAAGCATAATCCAGCAACG 59.967 50.000 0.00 0.00 0.00 4.10
109 110 3.019564 ACCTGAAGCATAATCCAGCAAC 58.980 45.455 0.00 0.00 0.00 4.17
110 111 3.370840 ACCTGAAGCATAATCCAGCAA 57.629 42.857 0.00 0.00 0.00 3.91
111 112 3.370840 AACCTGAAGCATAATCCAGCA 57.629 42.857 0.00 0.00 0.00 4.41
112 113 8.970859 ATATATAACCTGAAGCATAATCCAGC 57.029 34.615 0.00 0.00 0.00 4.85
117 118 9.964354 TGCAAGATATATAACCTGAAGCATAAT 57.036 29.630 0.00 0.00 0.00 1.28
118 119 9.791801 TTGCAAGATATATAACCTGAAGCATAA 57.208 29.630 0.00 0.00 0.00 1.90
119 120 9.219603 GTTGCAAGATATATAACCTGAAGCATA 57.780 33.333 0.00 0.00 0.00 3.14
120 121 7.175641 GGTTGCAAGATATATAACCTGAAGCAT 59.824 37.037 0.00 0.00 38.16 3.79
121 122 6.486657 GGTTGCAAGATATATAACCTGAAGCA 59.513 38.462 0.00 0.00 38.16 3.91
122 123 6.486657 TGGTTGCAAGATATATAACCTGAAGC 59.513 38.462 0.00 0.00 40.99 3.86
123 124 7.498900 TGTGGTTGCAAGATATATAACCTGAAG 59.501 37.037 0.00 0.00 40.99 3.02
124 125 7.342581 TGTGGTTGCAAGATATATAACCTGAA 58.657 34.615 0.00 0.56 40.99 3.02
125 126 6.894682 TGTGGTTGCAAGATATATAACCTGA 58.105 36.000 0.00 1.07 40.99 3.86
126 127 7.750229 ATGTGGTTGCAAGATATATAACCTG 57.250 36.000 0.00 0.00 40.99 4.00
127 128 8.660435 ACTATGTGGTTGCAAGATATATAACCT 58.340 33.333 0.00 0.21 40.99 3.50
128 129 8.848474 ACTATGTGGTTGCAAGATATATAACC 57.152 34.615 0.00 7.22 40.83 2.85
147 148 6.594159 GTGCTAAACCAGATACACAACTATGT 59.406 38.462 0.00 0.00 41.61 2.29
148 149 6.593770 TGTGCTAAACCAGATACACAACTATG 59.406 38.462 0.00 0.00 35.28 2.23
149 150 6.707290 TGTGCTAAACCAGATACACAACTAT 58.293 36.000 0.00 0.00 35.28 2.12
150 151 6.104146 TGTGCTAAACCAGATACACAACTA 57.896 37.500 0.00 0.00 35.28 2.24
151 152 4.968259 TGTGCTAAACCAGATACACAACT 58.032 39.130 0.00 0.00 35.28 3.16
152 153 5.682943 TTGTGCTAAACCAGATACACAAC 57.317 39.130 0.00 0.00 41.58 3.32
153 154 6.892658 ATTTGTGCTAAACCAGATACACAA 57.107 33.333 0.00 0.00 43.90 3.33
154 155 6.264292 ACAATTTGTGCTAAACCAGATACACA 59.736 34.615 0.15 0.00 36.33 3.72
155 156 6.677913 ACAATTTGTGCTAAACCAGATACAC 58.322 36.000 0.15 0.00 0.00 2.90
156 157 6.892658 ACAATTTGTGCTAAACCAGATACA 57.107 33.333 0.15 0.00 0.00 2.29
157 158 7.120726 ACCTACAATTTGTGCTAAACCAGATAC 59.879 37.037 12.30 0.00 0.00 2.24
158 159 7.120579 CACCTACAATTTGTGCTAAACCAGATA 59.879 37.037 12.30 0.00 0.00 1.98
159 160 6.010219 ACCTACAATTTGTGCTAAACCAGAT 58.990 36.000 12.30 0.00 0.00 2.90
160 161 5.240623 CACCTACAATTTGTGCTAAACCAGA 59.759 40.000 12.30 0.00 0.00 3.86
161 162 5.460646 CACCTACAATTTGTGCTAAACCAG 58.539 41.667 12.30 0.00 0.00 4.00
162 163 5.446143 CACCTACAATTTGTGCTAAACCA 57.554 39.130 12.30 0.00 0.00 3.67
170 171 5.627499 ACTATGTGCACCTACAATTTGTG 57.373 39.130 15.69 0.00 33.69 3.33
171 172 7.753309 TTAACTATGTGCACCTACAATTTGT 57.247 32.000 15.69 7.30 33.69 2.83
172 173 7.540745 GGTTTAACTATGTGCACCTACAATTTG 59.459 37.037 15.69 0.00 33.69 2.32
173 174 7.450323 AGGTTTAACTATGTGCACCTACAATTT 59.550 33.333 15.69 1.11 32.66 1.82
174 175 6.946009 AGGTTTAACTATGTGCACCTACAATT 59.054 34.615 15.69 4.01 32.66 2.32
175 176 6.374333 CAGGTTTAACTATGTGCACCTACAAT 59.626 38.462 15.69 2.85 32.66 2.71
176 177 5.703592 CAGGTTTAACTATGTGCACCTACAA 59.296 40.000 15.69 0.00 32.66 2.41
177 178 5.242434 CAGGTTTAACTATGTGCACCTACA 58.758 41.667 15.69 0.00 32.66 2.74
178 179 4.634443 CCAGGTTTAACTATGTGCACCTAC 59.366 45.833 15.69 0.00 32.66 3.18
179 180 4.287585 ACCAGGTTTAACTATGTGCACCTA 59.712 41.667 15.69 8.13 32.66 3.08
180 181 3.073946 ACCAGGTTTAACTATGTGCACCT 59.926 43.478 15.69 7.20 34.86 4.00
181 182 3.418047 ACCAGGTTTAACTATGTGCACC 58.582 45.455 15.69 0.00 0.00 5.01
182 183 7.046033 AGTATACCAGGTTTAACTATGTGCAC 58.954 38.462 10.75 10.75 0.00 4.57
183 184 7.190335 AGTATACCAGGTTTAACTATGTGCA 57.810 36.000 0.00 0.00 0.00 4.57
184 185 9.257651 CTAAGTATACCAGGTTTAACTATGTGC 57.742 37.037 0.00 0.00 0.00 4.57
194 195 9.387257 CGGAATAAAACTAAGTATACCAGGTTT 57.613 33.333 17.55 17.55 33.86 3.27
195 196 7.496920 GCGGAATAAAACTAAGTATACCAGGTT 59.503 37.037 0.00 0.00 0.00 3.50
196 197 6.988580 GCGGAATAAAACTAAGTATACCAGGT 59.011 38.462 0.00 0.00 0.00 4.00
197 198 6.987992 TGCGGAATAAAACTAAGTATACCAGG 59.012 38.462 0.00 0.00 0.00 4.45
198 199 8.603242 ATGCGGAATAAAACTAAGTATACCAG 57.397 34.615 0.00 0.00 0.00 4.00
199 200 8.967664 AATGCGGAATAAAACTAAGTATACCA 57.032 30.769 0.00 0.00 0.00 3.25
208 209 9.738832 GGCTTAAATAAATGCGGAATAAAACTA 57.261 29.630 0.00 0.00 0.00 2.24
209 210 8.474831 AGGCTTAAATAAATGCGGAATAAAACT 58.525 29.630 0.00 0.00 0.00 2.66
210 211 8.642908 AGGCTTAAATAAATGCGGAATAAAAC 57.357 30.769 0.00 0.00 0.00 2.43
211 212 9.959749 CTAGGCTTAAATAAATGCGGAATAAAA 57.040 29.630 0.00 0.00 0.00 1.52
212 213 9.344772 TCTAGGCTTAAATAAATGCGGAATAAA 57.655 29.630 0.00 0.00 0.00 1.40
213 214 8.780249 GTCTAGGCTTAAATAAATGCGGAATAA 58.220 33.333 0.00 0.00 0.00 1.40
214 215 7.117236 CGTCTAGGCTTAAATAAATGCGGAATA 59.883 37.037 0.00 0.00 0.00 1.75
215 216 6.073222 CGTCTAGGCTTAAATAAATGCGGAAT 60.073 38.462 0.00 0.00 0.00 3.01
216 217 5.235616 CGTCTAGGCTTAAATAAATGCGGAA 59.764 40.000 0.00 0.00 0.00 4.30
217 218 4.748102 CGTCTAGGCTTAAATAAATGCGGA 59.252 41.667 0.00 0.00 0.00 5.54
218 219 4.510340 ACGTCTAGGCTTAAATAAATGCGG 59.490 41.667 0.00 0.00 0.00 5.69
219 220 5.333111 GGACGTCTAGGCTTAAATAAATGCG 60.333 44.000 16.46 0.00 0.00 4.73
220 221 5.758784 AGGACGTCTAGGCTTAAATAAATGC 59.241 40.000 16.46 0.00 0.00 3.56
221 222 6.761714 ACAGGACGTCTAGGCTTAAATAAATG 59.238 38.462 16.46 0.00 0.00 2.32
222 223 6.761714 CACAGGACGTCTAGGCTTAAATAAAT 59.238 38.462 16.46 0.00 0.00 1.40
223 224 6.071221 TCACAGGACGTCTAGGCTTAAATAAA 60.071 38.462 16.46 0.00 0.00 1.40
224 225 5.419788 TCACAGGACGTCTAGGCTTAAATAA 59.580 40.000 16.46 0.00 0.00 1.40
225 226 4.951715 TCACAGGACGTCTAGGCTTAAATA 59.048 41.667 16.46 0.00 0.00 1.40
226 227 3.767673 TCACAGGACGTCTAGGCTTAAAT 59.232 43.478 16.46 0.00 0.00 1.40
227 228 3.159472 TCACAGGACGTCTAGGCTTAAA 58.841 45.455 16.46 0.00 0.00 1.52
228 229 2.753452 CTCACAGGACGTCTAGGCTTAA 59.247 50.000 16.46 0.00 0.00 1.85
229 230 2.366533 CTCACAGGACGTCTAGGCTTA 58.633 52.381 16.46 0.00 0.00 3.09
230 231 1.178276 CTCACAGGACGTCTAGGCTT 58.822 55.000 16.46 0.00 0.00 4.35
231 232 1.316706 GCTCACAGGACGTCTAGGCT 61.317 60.000 16.46 0.26 0.00 4.58
232 233 1.139947 GCTCACAGGACGTCTAGGC 59.860 63.158 16.46 7.93 0.00 3.93
233 234 0.453793 CTGCTCACAGGACGTCTAGG 59.546 60.000 16.46 7.76 40.48 3.02
244 245 0.900421 CAGTCATCTCCCTGCTCACA 59.100 55.000 0.00 0.00 0.00 3.58
286 287 2.597305 CCTTCTTATGGTCGAACGAACG 59.403 50.000 7.71 0.00 33.87 3.95
290 291 2.953466 TCCCTTCTTATGGTCGAACG 57.047 50.000 0.00 0.00 0.00 3.95
327 328 4.565022 GAATCTCAGGGCTAATCTACTGC 58.435 47.826 0.00 0.00 0.00 4.40
328 329 4.279671 ACGAATCTCAGGGCTAATCTACTG 59.720 45.833 0.00 0.00 0.00 2.74
337 338 1.195115 TTAGCACGAATCTCAGGGCT 58.805 50.000 0.00 0.00 35.50 5.19
367 368 4.266502 CCTCAAAACGAACGCATTTTTCAA 59.733 37.500 0.00 0.00 0.00 2.69
374 375 0.040425 GCACCTCAAAACGAACGCAT 60.040 50.000 0.00 0.00 0.00 4.73
421 422 7.234187 TCGCATGTCAGTATCTATTGAAAAC 57.766 36.000 0.00 0.00 0.00 2.43
426 427 6.863126 TGTACATCGCATGTCAGTATCTATTG 59.137 38.462 5.25 0.00 43.67 1.90
445 446 1.816224 GCGTTTGGGTTCCATGTACAT 59.184 47.619 1.41 1.41 31.53 2.29
532 539 1.883732 GTGACTCGTGAGGCTAGCA 59.116 57.895 18.24 0.00 37.35 3.49
555 562 0.107945 GTCAGGTCAGGTCAGATGCC 60.108 60.000 0.00 0.00 0.00 4.40
556 563 0.107945 GGTCAGGTCAGGTCAGATGC 60.108 60.000 0.00 0.00 0.00 3.91
558 565 1.077828 TCAGGTCAGGTCAGGTCAGAT 59.922 52.381 0.00 0.00 0.00 2.90
559 566 0.482887 TCAGGTCAGGTCAGGTCAGA 59.517 55.000 0.00 0.00 0.00 3.27
560 567 0.605589 GTCAGGTCAGGTCAGGTCAG 59.394 60.000 0.00 0.00 0.00 3.51
620 637 1.378514 GGGAAGGATGGCGCTTTCA 60.379 57.895 7.64 0.00 0.00 2.69
632 649 3.004862 GTTATGTTACCACGTGGGAAGG 58.995 50.000 36.47 13.60 39.07 3.46
695 713 1.654105 CGTGTTGTCAAGTCGCTATCC 59.346 52.381 0.00 0.00 0.00 2.59
707 725 1.258982 CAGCTGAGTTCACGTGTTGTC 59.741 52.381 16.51 10.70 0.00 3.18
738 756 1.759445 GGCTTGGTCTAGCATCTCTGA 59.241 52.381 6.72 0.00 43.02 3.27
742 760 1.144936 GCGGCTTGGTCTAGCATCT 59.855 57.895 6.72 0.00 43.02 2.90
804 825 0.040425 ATGACAAGACGCGTTTTGGC 60.040 50.000 36.01 35.23 33.68 4.52
810 831 1.145759 CGCCATATGACAAGACGCGT 61.146 55.000 13.85 13.85 33.82 6.01
841 862 3.422303 CTTAGCCGCGTTGCTGCA 61.422 61.111 18.44 0.00 41.09 4.41
906 927 2.104111 AGTGTTGCTTGGTGTAGTGCTA 59.896 45.455 0.00 0.00 0.00 3.49
912 933 2.434336 AGTGAGAGTGTTGCTTGGTGTA 59.566 45.455 0.00 0.00 0.00 2.90
917 938 3.316283 GAGAGAGTGAGAGTGTTGCTTG 58.684 50.000 0.00 0.00 0.00 4.01
1101 1157 1.210931 CGTCTCGCGGAACTTGGTA 59.789 57.895 6.13 0.00 36.85 3.25
1353 1409 2.775856 GCGCCGGACATCAGAGAGA 61.776 63.158 5.05 0.00 0.00 3.10
1510 1566 0.321653 GTGGCATCACCGGAAGTCTT 60.322 55.000 9.46 0.00 43.94 3.01
1744 1800 5.939764 TGCTTACACTATCTCTCCAACAT 57.060 39.130 0.00 0.00 0.00 2.71
1746 1802 5.479306 TGTTGCTTACACTATCTCTCCAAC 58.521 41.667 0.00 0.00 0.00 3.77
1759 1815 2.158885 TGCACACTAGGTGTTGCTTACA 60.159 45.455 18.13 0.00 45.08 2.41
1760 1816 2.489971 TGCACACTAGGTGTTGCTTAC 58.510 47.619 18.13 0.00 45.08 2.34
1761 1817 2.920724 TGCACACTAGGTGTTGCTTA 57.079 45.000 18.13 4.98 45.08 3.09
1762 1818 2.051334 TTGCACACTAGGTGTTGCTT 57.949 45.000 18.13 0.00 45.08 3.91
1763 1819 2.051334 TTTGCACACTAGGTGTTGCT 57.949 45.000 18.13 0.00 45.08 3.91
1764 1820 2.861462 TTTTGCACACTAGGTGTTGC 57.139 45.000 11.47 13.80 45.08 4.17
1766 1822 6.952773 TTCTATTTTTGCACACTAGGTGTT 57.047 33.333 11.47 0.00 45.08 3.32
1795 1857 3.912496 AAATCCGATGGATGTCACTGA 57.088 42.857 0.00 0.00 42.27 3.41
1796 1858 3.940852 TGAAAATCCGATGGATGTCACTG 59.059 43.478 0.00 0.00 42.27 3.66
1798 1860 4.963276 TTGAAAATCCGATGGATGTCAC 57.037 40.909 10.44 1.02 42.27 3.67
1799 1861 4.338964 CCATTGAAAATCCGATGGATGTCA 59.661 41.667 0.00 4.04 46.49 3.58
1800 1862 4.580167 TCCATTGAAAATCCGATGGATGTC 59.420 41.667 8.40 1.51 46.84 3.06
1805 1867 4.581824 AGACATCCATTGAAAATCCGATGG 59.418 41.667 0.00 0.00 45.45 3.51
1808 1870 4.842574 TGAGACATCCATTGAAAATCCGA 58.157 39.130 0.00 0.00 0.00 4.55
1809 1871 4.877823 TCTGAGACATCCATTGAAAATCCG 59.122 41.667 0.00 0.00 0.00 4.18
1810 1872 6.956202 ATCTGAGACATCCATTGAAAATCC 57.044 37.500 0.00 0.00 0.00 3.01
1811 1873 7.993101 TGAATCTGAGACATCCATTGAAAATC 58.007 34.615 0.00 0.00 0.00 2.17
1812 1874 7.949690 TGAATCTGAGACATCCATTGAAAAT 57.050 32.000 0.00 0.00 0.00 1.82
1813 1875 7.764141 TTGAATCTGAGACATCCATTGAAAA 57.236 32.000 0.00 0.00 0.00 2.29
1815 1877 6.183360 GCATTGAATCTGAGACATCCATTGAA 60.183 38.462 0.00 0.00 0.00 2.69
1816 1878 5.298527 GCATTGAATCTGAGACATCCATTGA 59.701 40.000 0.00 0.00 0.00 2.57
1818 1880 5.198207 TGCATTGAATCTGAGACATCCATT 58.802 37.500 0.00 0.00 0.00 3.16
1819 1881 4.788679 TGCATTGAATCTGAGACATCCAT 58.211 39.130 0.00 0.00 0.00 3.41
1820 1882 4.224991 TGCATTGAATCTGAGACATCCA 57.775 40.909 0.00 0.00 0.00 3.41
1821 1883 4.083961 CGATGCATTGAATCTGAGACATCC 60.084 45.833 8.37 0.00 31.22 3.51
1822 1884 4.083961 CCGATGCATTGAATCTGAGACATC 60.084 45.833 15.98 0.00 0.00 3.06
1823 1885 3.813724 CCGATGCATTGAATCTGAGACAT 59.186 43.478 15.98 0.00 0.00 3.06
1824 1886 3.200483 CCGATGCATTGAATCTGAGACA 58.800 45.455 15.98 0.00 0.00 3.41
1826 1888 2.435437 TCCCGATGCATTGAATCTGAGA 59.565 45.455 15.98 0.00 0.00 3.27
1827 1889 2.842457 TCCCGATGCATTGAATCTGAG 58.158 47.619 15.98 0.00 0.00 3.35
1828 1890 3.280197 TTCCCGATGCATTGAATCTGA 57.720 42.857 15.98 1.36 0.00 3.27
1830 1892 3.319972 CCAATTCCCGATGCATTGAATCT 59.680 43.478 15.98 6.12 30.66 2.40
1831 1893 3.068590 ACCAATTCCCGATGCATTGAATC 59.931 43.478 15.98 0.00 30.66 2.52
1832 1894 3.033184 ACCAATTCCCGATGCATTGAAT 58.967 40.909 15.98 13.52 30.66 2.57
1833 1895 2.166050 CACCAATTCCCGATGCATTGAA 59.834 45.455 15.98 11.89 30.66 2.69
1834 1896 1.750206 CACCAATTCCCGATGCATTGA 59.250 47.619 15.98 2.99 30.66 2.57
1835 1897 1.202440 CCACCAATTCCCGATGCATTG 60.202 52.381 6.99 6.99 0.00 2.82
1836 1898 1.113788 CCACCAATTCCCGATGCATT 58.886 50.000 0.00 0.00 0.00 3.56
1837 1899 0.258484 TCCACCAATTCCCGATGCAT 59.742 50.000 0.00 0.00 0.00 3.96
1838 1900 0.038890 TTCCACCAATTCCCGATGCA 59.961 50.000 0.00 0.00 0.00 3.96
1839 1901 0.455815 GTTCCACCAATTCCCGATGC 59.544 55.000 0.00 0.00 0.00 3.91
1840 1902 2.128771 AGTTCCACCAATTCCCGATG 57.871 50.000 0.00 0.00 0.00 3.84
1841 1903 2.308866 AGAAGTTCCACCAATTCCCGAT 59.691 45.455 0.00 0.00 0.00 4.18
1842 1904 1.702957 AGAAGTTCCACCAATTCCCGA 59.297 47.619 0.00 0.00 0.00 5.14
1843 1905 1.812571 CAGAAGTTCCACCAATTCCCG 59.187 52.381 0.00 0.00 0.00 5.14
1844 1906 2.558359 CACAGAAGTTCCACCAATTCCC 59.442 50.000 0.00 0.00 0.00 3.97
1845 1907 2.029918 GCACAGAAGTTCCACCAATTCC 60.030 50.000 0.00 0.00 0.00 3.01
1846 1908 2.622942 TGCACAGAAGTTCCACCAATTC 59.377 45.455 0.00 0.00 0.00 2.17
1847 1909 2.665165 TGCACAGAAGTTCCACCAATT 58.335 42.857 0.00 0.00 0.00 2.32
1848 1910 2.363306 TGCACAGAAGTTCCACCAAT 57.637 45.000 0.00 0.00 0.00 3.16
1849 1911 2.363306 ATGCACAGAAGTTCCACCAA 57.637 45.000 0.00 0.00 0.00 3.67
1850 1912 2.363306 AATGCACAGAAGTTCCACCA 57.637 45.000 0.00 0.00 0.00 4.17
1851 1913 3.733443 AAAATGCACAGAAGTTCCACC 57.267 42.857 0.00 0.00 0.00 4.61
1852 1914 5.048083 TCCATAAAATGCACAGAAGTTCCAC 60.048 40.000 0.00 0.00 0.00 4.02
1853 1915 5.076182 TCCATAAAATGCACAGAAGTTCCA 58.924 37.500 0.00 0.00 0.00 3.53
1854 1916 5.643379 TCCATAAAATGCACAGAAGTTCC 57.357 39.130 0.00 0.00 0.00 3.62
1855 1917 6.366061 GGTTTCCATAAAATGCACAGAAGTTC 59.634 38.462 0.00 0.00 0.00 3.01
1856 1918 6.223120 GGTTTCCATAAAATGCACAGAAGTT 58.777 36.000 0.00 0.00 0.00 2.66
1857 1919 5.279456 GGGTTTCCATAAAATGCACAGAAGT 60.279 40.000 0.00 0.00 0.00 3.01
1858 1920 5.170748 GGGTTTCCATAAAATGCACAGAAG 58.829 41.667 0.00 0.00 0.00 2.85
1859 1921 4.020662 GGGGTTTCCATAAAATGCACAGAA 60.021 41.667 0.00 0.00 35.00 3.02
1860 1922 3.513515 GGGGTTTCCATAAAATGCACAGA 59.486 43.478 0.00 0.00 35.00 3.41
1861 1923 3.369366 GGGGGTTTCCATAAAATGCACAG 60.369 47.826 0.00 0.00 37.22 3.66
1862 1924 2.569404 GGGGGTTTCCATAAAATGCACA 59.431 45.455 0.00 0.00 37.22 4.57
1863 1925 2.837591 AGGGGGTTTCCATAAAATGCAC 59.162 45.455 0.00 0.00 37.22 4.57
1864 1926 3.197927 AGGGGGTTTCCATAAAATGCA 57.802 42.857 0.00 0.00 37.22 3.96
1865 1927 3.517500 TCAAGGGGGTTTCCATAAAATGC 59.482 43.478 0.00 0.00 37.22 3.56
1866 1928 4.777366 AGTCAAGGGGGTTTCCATAAAATG 59.223 41.667 0.00 0.00 37.22 2.32
1867 1929 5.023514 AGTCAAGGGGGTTTCCATAAAAT 57.976 39.130 0.00 0.00 37.22 1.82
1868 1930 4.479156 AGTCAAGGGGGTTTCCATAAAA 57.521 40.909 0.00 0.00 37.22 1.52
1869 1931 5.602291 TTAGTCAAGGGGGTTTCCATAAA 57.398 39.130 0.00 0.00 37.22 1.40
1870 1932 5.806955 ATTAGTCAAGGGGGTTTCCATAA 57.193 39.130 0.00 0.00 37.22 1.90
1871 1933 5.974370 ACTATTAGTCAAGGGGGTTTCCATA 59.026 40.000 0.00 0.00 37.22 2.74
1872 1934 4.794067 ACTATTAGTCAAGGGGGTTTCCAT 59.206 41.667 0.00 0.00 37.22 3.41
1873 1935 4.180723 ACTATTAGTCAAGGGGGTTTCCA 58.819 43.478 0.00 0.00 37.22 3.53
1874 1936 4.778579 GACTATTAGTCAAGGGGGTTTCC 58.221 47.826 17.16 0.00 44.45 3.13
1891 1953 9.170890 TGGAGGGATCTTTTTATACATGACTAT 57.829 33.333 0.00 0.00 0.00 2.12
1892 1954 8.429641 GTGGAGGGATCTTTTTATACATGACTA 58.570 37.037 0.00 0.00 0.00 2.59
1893 1955 7.283329 GTGGAGGGATCTTTTTATACATGACT 58.717 38.462 0.00 0.00 0.00 3.41
1894 1956 6.486993 GGTGGAGGGATCTTTTTATACATGAC 59.513 42.308 0.00 0.00 0.00 3.06
1895 1957 6.159575 TGGTGGAGGGATCTTTTTATACATGA 59.840 38.462 0.00 0.00 0.00 3.07
1896 1958 6.364701 TGGTGGAGGGATCTTTTTATACATG 58.635 40.000 0.00 0.00 0.00 3.21
1897 1959 6.590656 TGGTGGAGGGATCTTTTTATACAT 57.409 37.500 0.00 0.00 0.00 2.29
1898 1960 6.069088 ACATGGTGGAGGGATCTTTTTATACA 60.069 38.462 0.00 0.00 0.00 2.29
1899 1961 6.365520 ACATGGTGGAGGGATCTTTTTATAC 58.634 40.000 0.00 0.00 0.00 1.47
1900 1962 6.590656 ACATGGTGGAGGGATCTTTTTATA 57.409 37.500 0.00 0.00 0.00 0.98
1901 1963 5.472301 ACATGGTGGAGGGATCTTTTTAT 57.528 39.130 0.00 0.00 0.00 1.40
1902 1964 4.946160 ACATGGTGGAGGGATCTTTTTA 57.054 40.909 0.00 0.00 0.00 1.52
1903 1965 3.833559 ACATGGTGGAGGGATCTTTTT 57.166 42.857 0.00 0.00 0.00 1.94
1904 1966 3.833559 AACATGGTGGAGGGATCTTTT 57.166 42.857 0.00 0.00 0.00 2.27
1905 1967 3.434309 CAAACATGGTGGAGGGATCTTT 58.566 45.455 0.00 0.00 0.00 2.52
1906 1968 2.291800 CCAAACATGGTGGAGGGATCTT 60.292 50.000 11.35 0.00 38.54 2.40
1907 1969 1.285962 CCAAACATGGTGGAGGGATCT 59.714 52.381 11.35 0.00 38.54 2.75
1908 1970 1.767759 CCAAACATGGTGGAGGGATC 58.232 55.000 11.35 0.00 38.54 3.36
1909 1971 0.324645 GCCAAACATGGTGGAGGGAT 60.325 55.000 19.09 0.00 38.54 3.85
1910 1972 1.076549 GCCAAACATGGTGGAGGGA 59.923 57.895 19.09 0.00 38.54 4.20
1911 1973 0.967380 GAGCCAAACATGGTGGAGGG 60.967 60.000 19.09 4.52 38.54 4.30
1912 1974 0.038744 AGAGCCAAACATGGTGGAGG 59.961 55.000 19.09 7.25 38.54 4.30
1913 1975 1.815003 GAAGAGCCAAACATGGTGGAG 59.185 52.381 19.09 0.00 38.54 3.86
1916 1978 2.095567 CGAAGAAGAGCCAAACATGGTG 60.096 50.000 0.00 0.00 0.00 4.17
1919 1981 3.250762 TCAACGAAGAAGAGCCAAACATG 59.749 43.478 0.00 0.00 0.00 3.21
1943 2070 2.305927 GGGTTGACAAGGAATGAGGAGA 59.694 50.000 0.00 0.00 0.00 3.71
1944 2071 2.619074 GGGGTTGACAAGGAATGAGGAG 60.619 54.545 0.00 0.00 0.00 3.69
1946 2073 1.616994 GGGGGTTGACAAGGAATGAGG 60.617 57.143 0.00 0.00 0.00 3.86
1947 2074 1.355720 AGGGGGTTGACAAGGAATGAG 59.644 52.381 0.00 0.00 0.00 2.90
1948 2075 1.455822 AGGGGGTTGACAAGGAATGA 58.544 50.000 0.00 0.00 0.00 2.57
1949 2076 2.299867 CAAAGGGGGTTGACAAGGAATG 59.700 50.000 0.00 0.00 0.00 2.67
1950 2077 2.608623 CAAAGGGGGTTGACAAGGAAT 58.391 47.619 0.00 0.00 0.00 3.01
1960 2092 4.202577 GCTAAGGATATAGCAAAGGGGGTT 60.203 45.833 1.64 0.00 46.06 4.11
1970 2102 7.093992 CACTTGGTTCTAGCTAAGGATATAGC 58.906 42.308 0.00 0.00 46.94 2.97
2063 2222 6.013898 TGAAATATCCATCTCTAAGAGGGCTG 60.014 42.308 4.26 1.02 45.29 4.85
2114 2540 9.671279 TCATAATAGGCATATGTTTATGGACAG 57.329 33.333 18.78 5.09 36.49 3.51
2163 2589 9.619316 GACACACACACAGCATATTTAATAAAA 57.381 29.630 0.00 0.00 0.00 1.52
2174 2765 2.706636 GTGGACACACACACAGCAT 58.293 52.632 0.00 0.00 46.90 3.79
2195 2786 7.319646 ACTGTTTTCATATTTTGTGTGTGTGT 58.680 30.769 0.00 0.00 0.00 3.72
2197 2788 7.918562 GGTACTGTTTTCATATTTTGTGTGTGT 59.081 33.333 0.00 0.00 0.00 3.72
2199 2790 8.232913 AGGTACTGTTTTCATATTTTGTGTGT 57.767 30.769 0.00 0.00 37.18 3.72
2269 2869 7.606839 GCAGGGGGTTGATTTATAGTAATAGTC 59.393 40.741 0.00 0.00 0.00 2.59
2302 2902 7.948034 TGGATCGGATTGGTTTATAGTTTTT 57.052 32.000 0.00 0.00 0.00 1.94
2303 2903 7.832187 TCTTGGATCGGATTGGTTTATAGTTTT 59.168 33.333 0.00 0.00 0.00 2.43
2304 2904 7.343357 TCTTGGATCGGATTGGTTTATAGTTT 58.657 34.615 0.00 0.00 0.00 2.66
2305 2905 6.895782 TCTTGGATCGGATTGGTTTATAGTT 58.104 36.000 0.00 0.00 0.00 2.24
2306 2906 6.326583 TCTCTTGGATCGGATTGGTTTATAGT 59.673 38.462 0.00 0.00 0.00 2.12
2307 2907 6.759272 TCTCTTGGATCGGATTGGTTTATAG 58.241 40.000 0.00 0.00 0.00 1.31
2308 2908 6.740944 TCTCTTGGATCGGATTGGTTTATA 57.259 37.500 0.00 0.00 0.00 0.98
2309 2909 5.630415 TCTCTTGGATCGGATTGGTTTAT 57.370 39.130 0.00 0.00 0.00 1.40
2310 2910 5.429681 TTCTCTTGGATCGGATTGGTTTA 57.570 39.130 0.00 0.00 0.00 2.01
2311 2911 4.301072 TTCTCTTGGATCGGATTGGTTT 57.699 40.909 0.00 0.00 0.00 3.27
2312 2912 4.202441 CATTCTCTTGGATCGGATTGGTT 58.798 43.478 0.00 0.00 0.00 3.67
2313 2913 3.813443 CATTCTCTTGGATCGGATTGGT 58.187 45.455 0.00 0.00 0.00 3.67
2314 2914 2.551459 GCATTCTCTTGGATCGGATTGG 59.449 50.000 0.00 0.00 0.00 3.16
2383 2983 8.547967 TCAGAGAAAATAGCGTAAAACATTCT 57.452 30.769 0.00 0.00 0.00 2.40
2384 2984 9.774742 AATCAGAGAAAATAGCGTAAAACATTC 57.225 29.630 0.00 0.00 0.00 2.67
2387 2987 8.779303 TGAAATCAGAGAAAATAGCGTAAAACA 58.221 29.630 0.00 0.00 0.00 2.83
2664 3707 8.494433 ACTCATTCCATTAGAAAGCATAAGGTA 58.506 33.333 0.00 0.00 38.21 3.08
2703 3747 8.993424 ACATACCATCTACTAAAGAATGGAGTT 58.007 33.333 7.21 0.00 37.89 3.01
2716 3760 4.585955 CCACGCTTACATACCATCTACT 57.414 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.