Multiple sequence alignment - TraesCS6A01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G380000 chr6A 100.000 6862 0 0 1 6862 600462668 600455807 0.000000e+00 12672.0
1 TraesCS6A01G380000 chr6A 99.333 1799 8 2 839 2637 600391498 600393292 0.000000e+00 3253.0
2 TraesCS6A01G380000 chr6A 86.364 2332 235 47 3470 5763 600394106 600396392 0.000000e+00 2468.0
3 TraesCS6A01G380000 chr6A 82.791 215 21 13 518 728 600391215 600391417 1.970000e-40 178.0
4 TraesCS6A01G380000 chr6A 96.667 90 3 0 3194 3283 579019659 579019570 4.290000e-32 150.0
5 TraesCS6A01G380000 chr6A 92.000 100 6 2 3180 3279 201248490 201248393 9.280000e-29 139.0
6 TraesCS6A01G380000 chr6A 91.919 99 7 1 3188 3285 548412795 548412697 3.340000e-28 137.0
7 TraesCS6A01G380000 chr6A 87.387 111 10 4 3090 3196 426299375 426299265 2.600000e-24 124.0
8 TraesCS6A01G380000 chr6A 92.754 69 5 0 2992 3060 426299421 426299353 4.380000e-17 100.0
9 TraesCS6A01G380000 chr6D 96.536 3551 101 14 3326 6862 454252934 454249392 0.000000e+00 5856.0
10 TraesCS6A01G380000 chr6D 86.981 3180 196 111 144 3196 454256077 454252989 0.000000e+00 3378.0
11 TraesCS6A01G380000 chr6D 86.197 2485 250 54 3301 5746 454127347 454129777 0.000000e+00 2603.0
12 TraesCS6A01G380000 chr6D 83.572 2374 278 73 3448 5767 454215451 454217766 0.000000e+00 2121.0
13 TraesCS6A01G380000 chr6D 85.756 1720 195 29 4069 5767 454224342 454226032 0.000000e+00 1773.0
14 TraesCS6A01G380000 chr6D 85.208 1271 74 49 1534 2783 454125630 454126807 0.000000e+00 1201.0
15 TraesCS6A01G380000 chr6D 82.541 905 78 37 868 1724 454221542 454222414 0.000000e+00 723.0
16 TraesCS6A01G380000 chr6D 88.722 532 32 12 961 1486 454124961 454125470 5.840000e-175 625.0
17 TraesCS6A01G380000 chr6D 94.962 397 11 3 2101 2491 454213569 454213962 1.260000e-171 614.0
18 TraesCS6A01G380000 chr6D 86.874 579 28 26 2061 2636 454222645 454223178 7.610000e-169 604.0
19 TraesCS6A01G380000 chr6D 80.552 833 81 42 1058 1847 454212647 454213441 3.590000e-157 566.0
20 TraesCS6A01G380000 chr6D 82.383 596 68 19 3445 4016 454223528 454224110 1.030000e-132 484.0
21 TraesCS6A01G380000 chr6D 90.530 264 22 3 3434 3696 6097038 6096777 5.090000e-91 346.0
22 TraesCS6A01G380000 chr6D 83.861 316 27 14 2499 2802 454214919 454215222 5.240000e-71 279.0
23 TraesCS6A01G380000 chr6D 89.100 211 9 8 2847 3057 454126801 454126997 4.110000e-62 250.0
24 TraesCS6A01G380000 chr6D 93.617 94 6 0 3186 3279 85039142 85039235 2.580000e-29 141.0
25 TraesCS6A01G380000 chr6B 94.557 3491 146 20 3398 6862 690734988 690731516 0.000000e+00 5354.0
26 TraesCS6A01G380000 chr6B 85.808 3199 231 112 139 3196 690738191 690735075 0.000000e+00 3186.0
27 TraesCS6A01G380000 chr6B 83.516 2378 289 72 3445 5767 690449345 690451674 0.000000e+00 2124.0
28 TraesCS6A01G380000 chr6B 84.969 1936 235 39 3859 5765 690441517 690443425 0.000000e+00 1912.0
29 TraesCS6A01G380000 chr6B 86.270 1260 134 22 4505 5755 690330182 690331411 0.000000e+00 1332.0
30 TraesCS6A01G380000 chr6B 86.171 969 97 24 1032 1992 690316366 690317305 0.000000e+00 1013.0
31 TraesCS6A01G380000 chr6B 84.914 928 86 30 841 1730 690447281 690448192 0.000000e+00 889.0
32 TraesCS6A01G380000 chr6B 93.473 429 24 2 2031 2456 690318367 690318794 9.710000e-178 634.0
33 TraesCS6A01G380000 chr6B 89.341 516 22 15 1925 2438 690438338 690438822 9.780000e-173 617.0
34 TraesCS6A01G380000 chr6B 93.939 396 15 1 2061 2456 690448429 690448815 2.130000e-164 590.0
35 TraesCS6A01G380000 chr6B 80.661 817 88 30 1060 1847 690437565 690438340 2.780000e-158 569.0
36 TraesCS6A01G380000 chr6B 84.819 415 44 13 4103 4516 690327745 690328141 3.860000e-107 399.0
37 TraesCS6A01G380000 chr6B 89.963 269 23 3 3431 3696 636562572 636562839 1.830000e-90 344.0
38 TraesCS6A01G380000 chr6B 86.631 187 10 5 2499 2674 690448822 690449004 7.020000e-45 193.0
39 TraesCS6A01G380000 chr6B 82.587 201 15 11 530 728 690315491 690315673 7.120000e-35 159.0
40 TraesCS6A01G380000 chr6B 100.000 29 0 0 3153 3181 690735202 690735174 3.000000e-03 54.7
41 TraesCS6A01G380000 chr4B 92.045 352 23 5 2712 3060 475719242 475718893 2.220000e-134 490.0
42 TraesCS6A01G380000 chr4B 94.505 91 5 0 3193 3283 30370064 30369974 2.580000e-29 141.0
43 TraesCS6A01G380000 chr4B 88.571 105 8 3 3096 3196 475718909 475718805 2.600000e-24 124.0
44 TraesCS6A01G380000 chr7D 85.403 459 38 15 3275 3714 590894622 590895070 3.770000e-122 449.0
45 TraesCS6A01G380000 chr1B 91.483 317 23 4 2746 3060 46515926 46515612 3.800000e-117 433.0
46 TraesCS6A01G380000 chr1B 85.176 425 43 13 3298 3705 44981466 44981045 1.060000e-112 418.0
47 TraesCS6A01G380000 chr1B 90.476 105 6 3 3096 3196 46515628 46515524 1.200000e-27 135.0
48 TraesCS6A01G380000 chr2D 83.759 431 45 15 3301 3714 247462704 247462282 1.080000e-102 385.0
49 TraesCS6A01G380000 chr7B 90.110 273 25 2 3425 3696 242513477 242513748 3.040000e-93 353.0
50 TraesCS6A01G380000 chr1A 97.647 85 2 0 3195 3279 99921013 99920929 5.550000e-31 147.0
51 TraesCS6A01G380000 chr1A 97.647 85 2 0 3195 3279 281357596 281357512 5.550000e-31 147.0
52 TraesCS6A01G380000 chr5D 93.684 95 6 0 3188 3282 310766922 310766828 7.170000e-30 143.0
53 TraesCS6A01G380000 chr7A 91.837 98 8 0 3195 3292 473897576 473897479 3.340000e-28 137.0
54 TraesCS6A01G380000 chr4A 86.486 111 11 4 3090 3196 31215454 31215344 1.210000e-22 119.0
55 TraesCS6A01G380000 chr4A 92.754 69 5 0 2992 3060 31215500 31215432 4.380000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G380000 chr6A 600455807 600462668 6861 True 12672.000000 12672 100.000000 1 6862 1 chr6A.!!$R4 6861
1 TraesCS6A01G380000 chr6A 600391215 600396392 5177 False 1966.333333 3253 89.496000 518 5763 3 chr6A.!!$F1 5245
2 TraesCS6A01G380000 chr6D 454249392 454256077 6685 True 4617.000000 5856 91.758500 144 6862 2 chr6D.!!$R2 6718
3 TraesCS6A01G380000 chr6D 454124961 454129777 4816 False 1169.750000 2603 87.306750 961 5746 4 chr6D.!!$F2 4785
4 TraesCS6A01G380000 chr6D 454212647 454226032 13385 False 895.500000 2121 85.062625 868 5767 8 chr6D.!!$F3 4899
5 TraesCS6A01G380000 chr6B 690731516 690738191 6675 True 2864.900000 5354 93.455000 139 6862 3 chr6B.!!$R1 6723
6 TraesCS6A01G380000 chr6B 690437565 690451674 14109 False 984.857143 2124 86.281571 841 5767 7 chr6B.!!$F4 4926
7 TraesCS6A01G380000 chr6B 690327745 690331411 3666 False 865.500000 1332 85.544500 4103 5755 2 chr6B.!!$F3 1652
8 TraesCS6A01G380000 chr6B 690315491 690318794 3303 False 602.000000 1013 87.410333 530 2456 3 chr6B.!!$F2 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 621 0.101399 AGTTACAGATCGAGCAGCGG 59.899 55.000 2.38 0.0 41.33 5.52 F
863 1124 0.320374 TTCTCCGATGGTGTGTGTCC 59.680 55.000 0.00 0.0 0.00 4.02 F
864 1125 1.079127 CTCCGATGGTGTGTGTCCC 60.079 63.158 0.00 0.0 0.00 4.46 F
2834 15186 1.276421 ACATGGCTAGTGAGTGACCAC 59.724 52.381 0.00 0.0 37.32 4.16 F
3783 16412 0.745468 CTTCCTCGTAGGTAGGCACC 59.255 60.000 0.00 0.0 46.19 5.01 F
4763 19686 0.875059 CAACCGAGGAGCCTCAAAAC 59.125 55.000 16.23 0.0 42.86 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 13669 0.750182 GTCAGAGACTCCTCCTCCGG 60.750 65.000 0.00 0.00 40.30 5.14 R
2844 15196 3.350833 GTCACTAGGACGACCCTAAAGA 58.649 50.000 0.00 3.56 46.43 2.52 R
2845 15197 3.779271 GTCACTAGGACGACCCTAAAG 57.221 52.381 0.00 0.00 46.43 1.85 R
4749 19672 0.519077 CTTGCGTTTTGAGGCTCCTC 59.481 55.000 12.86 8.95 43.01 3.71 R
5082 20015 1.376609 CGTACTTCCCAGCATTGGCC 61.377 60.000 0.00 0.00 43.58 5.36 R
5941 20878 0.179702 CCAGAATGCCTCAGCTAGCA 59.820 55.000 18.83 7.61 44.45 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.729281 AATAGACCTTGGTCTTATTCGTAAAAA 57.271 29.630 25.01 5.46 35.09 1.94
57 58 7.519032 AATTAATCCAGGTTTTCAAGAACGA 57.481 32.000 0.00 0.00 0.00 3.85
58 59 6.945938 TTAATCCAGGTTTTCAAGAACGAA 57.054 33.333 0.00 0.00 0.00 3.85
59 60 7.519032 TTAATCCAGGTTTTCAAGAACGAAT 57.481 32.000 0.00 0.00 0.00 3.34
60 61 6.405278 AATCCAGGTTTTCAAGAACGAATT 57.595 33.333 0.00 0.00 0.00 2.17
62 63 5.587289 TCCAGGTTTTCAAGAACGAATTTG 58.413 37.500 0.00 0.00 0.00 2.32
64 65 5.043248 CAGGTTTTCAAGAACGAATTTGCT 58.957 37.500 0.00 0.00 0.00 3.91
65 66 6.205784 CAGGTTTTCAAGAACGAATTTGCTA 58.794 36.000 0.00 0.00 0.00 3.49
66 67 6.360681 CAGGTTTTCAAGAACGAATTTGCTAG 59.639 38.462 0.00 0.00 0.00 3.42
67 68 5.117135 GGTTTTCAAGAACGAATTTGCTAGC 59.883 40.000 8.10 8.10 0.00 3.42
68 69 5.689383 TTTCAAGAACGAATTTGCTAGCT 57.311 34.783 17.23 0.00 0.00 3.32
69 70 6.795098 TTTCAAGAACGAATTTGCTAGCTA 57.205 33.333 17.23 5.31 0.00 3.32
70 71 5.779806 TCAAGAACGAATTTGCTAGCTAC 57.220 39.130 17.23 2.08 0.00 3.58
71 72 4.326278 TCAAGAACGAATTTGCTAGCTACG 59.674 41.667 17.23 15.23 0.00 3.51
72 73 3.846360 AGAACGAATTTGCTAGCTACGT 58.154 40.909 17.23 15.82 0.00 3.57
74 75 4.797349 AGAACGAATTTGCTAGCTACGTAC 59.203 41.667 17.23 2.62 32.45 3.67
75 76 3.442100 ACGAATTTGCTAGCTACGTACC 58.558 45.455 17.23 0.00 0.00 3.34
76 77 3.119388 ACGAATTTGCTAGCTACGTACCA 60.119 43.478 17.23 0.00 0.00 3.25
77 78 3.861113 CGAATTTGCTAGCTACGTACCAA 59.139 43.478 17.23 0.00 0.00 3.67
78 79 4.506654 CGAATTTGCTAGCTACGTACCAAT 59.493 41.667 17.23 0.00 0.00 3.16
79 80 5.006358 CGAATTTGCTAGCTACGTACCAATT 59.994 40.000 17.23 3.07 0.00 2.32
80 81 5.734855 ATTTGCTAGCTACGTACCAATTG 57.265 39.130 17.23 0.00 0.00 2.32
81 82 4.459390 TTGCTAGCTACGTACCAATTGA 57.541 40.909 17.23 0.00 0.00 2.57
82 83 4.665833 TGCTAGCTACGTACCAATTGAT 57.334 40.909 17.23 0.00 0.00 2.57
83 84 4.368315 TGCTAGCTACGTACCAATTGATG 58.632 43.478 17.23 0.00 0.00 3.07
84 85 4.098807 TGCTAGCTACGTACCAATTGATGA 59.901 41.667 17.23 0.00 0.00 2.92
86 87 5.050972 GCTAGCTACGTACCAATTGATGAAC 60.051 44.000 7.70 0.00 0.00 3.18
87 88 4.189231 AGCTACGTACCAATTGATGAACC 58.811 43.478 7.12 0.00 0.00 3.62
88 89 3.000925 GCTACGTACCAATTGATGAACCG 59.999 47.826 7.12 3.02 0.00 4.44
89 90 1.735571 ACGTACCAATTGATGAACCGC 59.264 47.619 7.12 0.00 0.00 5.68
90 91 1.267334 CGTACCAATTGATGAACCGCG 60.267 52.381 7.12 0.00 0.00 6.46
93 94 1.401552 ACCAATTGATGAACCGCGATG 59.598 47.619 8.23 0.00 0.00 3.84
95 96 2.291465 CCAATTGATGAACCGCGATGAT 59.709 45.455 8.23 0.00 0.00 2.45
96 97 3.498018 CCAATTGATGAACCGCGATGATA 59.502 43.478 8.23 0.00 0.00 2.15
98 99 5.335113 CCAATTGATGAACCGCGATGATAAT 60.335 40.000 8.23 0.00 0.00 1.28
99 100 4.990543 TTGATGAACCGCGATGATAATC 57.009 40.909 8.23 3.59 0.00 1.75
100 101 4.257267 TGATGAACCGCGATGATAATCT 57.743 40.909 8.23 0.00 0.00 2.40
102 103 4.448732 TGATGAACCGCGATGATAATCTTG 59.551 41.667 8.23 0.00 0.00 3.02
104 105 3.802139 TGAACCGCGATGATAATCTTGAC 59.198 43.478 8.23 0.00 0.00 3.18
105 106 3.452755 ACCGCGATGATAATCTTGACA 57.547 42.857 8.23 0.00 0.00 3.58
106 107 3.792401 ACCGCGATGATAATCTTGACAA 58.208 40.909 8.23 0.00 0.00 3.18
108 109 5.538118 ACCGCGATGATAATCTTGACAATA 58.462 37.500 8.23 0.00 0.00 1.90
109 110 5.989168 ACCGCGATGATAATCTTGACAATAA 59.011 36.000 8.23 0.00 0.00 1.40
111 112 6.003505 CGCGATGATAATCTTGACAATAACG 58.996 40.000 0.00 0.00 0.00 3.18
112 113 6.129194 CGCGATGATAATCTTGACAATAACGA 60.129 38.462 0.00 0.00 0.00 3.85
116 117 7.784633 TGATAATCTTGACAATAACGATGCA 57.215 32.000 0.00 0.00 0.00 3.96
117 118 8.382030 TGATAATCTTGACAATAACGATGCAT 57.618 30.769 0.00 0.00 0.00 3.96
119 120 6.441093 AATCTTGACAATAACGATGCATGT 57.559 33.333 2.46 0.00 0.00 3.21
120 121 5.878332 TCTTGACAATAACGATGCATGTT 57.122 34.783 2.46 11.56 0.00 2.71
121 122 6.976636 TCTTGACAATAACGATGCATGTTA 57.023 33.333 2.46 13.40 36.34 2.41
123 124 6.370166 TCTTGACAATAACGATGCATGTTACA 59.630 34.615 18.00 11.75 34.85 2.41
124 125 6.676237 TGACAATAACGATGCATGTTACAT 57.324 33.333 18.00 10.98 34.85 2.29
126 127 5.820131 ACAATAACGATGCATGTTACATGG 58.180 37.500 24.34 11.67 34.85 3.66
127 128 5.588246 ACAATAACGATGCATGTTACATGGA 59.412 36.000 24.34 22.69 34.85 3.41
128 129 6.094742 ACAATAACGATGCATGTTACATGGAA 59.905 34.615 22.27 7.10 34.85 3.53
129 130 4.621068 AACGATGCATGTTACATGGAAG 57.379 40.909 22.27 19.89 0.00 3.46
130 131 3.609853 ACGATGCATGTTACATGGAAGT 58.390 40.909 22.27 20.46 0.00 3.01
132 133 3.622612 CGATGCATGTTACATGGAAGTGA 59.377 43.478 22.27 0.00 0.00 3.41
133 134 4.494690 CGATGCATGTTACATGGAAGTGAC 60.495 45.833 22.27 10.98 0.00 3.67
134 135 3.749226 TGCATGTTACATGGAAGTGACA 58.251 40.909 24.34 10.68 41.37 3.58
137 138 3.737032 TGTTACATGGAAGTGACACGA 57.263 42.857 0.00 0.00 33.71 4.35
162 165 2.746362 TGTATCATTGCGATGCACACAA 59.254 40.909 9.26 0.00 41.25 3.33
184 187 2.345880 ATATCGACACGACACGGGGC 62.346 60.000 0.00 0.00 39.18 5.80
201 210 2.373938 GCTGGCGCCGATCATATAC 58.626 57.895 23.90 0.00 0.00 1.47
211 220 3.737047 GCCGATCATATACACCGTATGGG 60.737 52.174 5.82 0.00 40.75 4.00
229 254 6.291955 CGTATGGGTGTAATAAACGTGTGATC 60.292 42.308 0.00 0.00 0.00 2.92
232 257 6.334989 TGGGTGTAATAAACGTGTGATCTAG 58.665 40.000 0.00 0.00 0.00 2.43
234 259 6.040878 GGTGTAATAAACGTGTGATCTAGCT 58.959 40.000 0.00 0.00 0.00 3.32
235 260 6.534079 GGTGTAATAAACGTGTGATCTAGCTT 59.466 38.462 0.00 0.00 0.00 3.74
236 261 7.391786 GTGTAATAAACGTGTGATCTAGCTTG 58.608 38.462 0.00 0.00 0.00 4.01
237 262 5.470845 AATAAACGTGTGATCTAGCTTGC 57.529 39.130 0.00 0.00 0.00 4.01
238 263 2.751166 AACGTGTGATCTAGCTTGCT 57.249 45.000 0.00 0.00 0.00 3.91
253 278 4.954092 GCTTGCTAGCTGTAATCAGTTT 57.046 40.909 17.23 0.00 44.27 2.66
279 304 0.393808 GTTTTCAGGCAGGCCGGATA 60.394 55.000 13.80 6.73 39.85 2.59
291 320 2.523440 CCGGATAAGTGGCAGGGTA 58.477 57.895 0.00 0.00 0.00 3.69
303 332 2.356278 AGGGTACGTGAGCGGGTA 59.644 61.111 0.00 0.00 43.45 3.69
397 442 7.297229 AGCTAAGCTCGAGAAGAAAATTAAC 57.703 36.000 18.75 0.00 30.62 2.01
407 465 7.713507 TCGAGAAGAAAATTAACAGAAGGAACA 59.286 33.333 0.00 0.00 0.00 3.18
417 475 4.813296 ACAGAAGGAACAAACTAAAGCG 57.187 40.909 0.00 0.00 0.00 4.68
427 485 1.435577 AACTAAAGCGGGCAACGTAG 58.564 50.000 0.00 0.00 46.52 3.51
430 492 0.671163 TAAAGCGGGCAACGTAGGTG 60.671 55.000 0.00 0.00 46.52 4.00
450 512 1.389555 CGTGCCCCCTTTAATTCTCC 58.610 55.000 0.00 0.00 0.00 3.71
456 518 3.374208 GCCCCCTTTAATTCTCCCATCTT 60.374 47.826 0.00 0.00 0.00 2.40
458 520 4.168871 CCCCCTTTAATTCTCCCATCTTCT 59.831 45.833 0.00 0.00 0.00 2.85
461 523 5.830457 CCCTTTAATTCTCCCATCTTCTTCC 59.170 44.000 0.00 0.00 0.00 3.46
467 529 4.344938 TCTCCCATCTTCTTCCTCTTCT 57.655 45.455 0.00 0.00 0.00 2.85
470 532 3.777522 TCCCATCTTCTTCCTCTTCTTCC 59.222 47.826 0.00 0.00 0.00 3.46
492 554 1.304464 CCTGGCCACCCTTTCCTTC 60.304 63.158 0.00 0.00 0.00 3.46
499 561 1.076438 CACCCTTTCCTTCCTCCCTT 58.924 55.000 0.00 0.00 0.00 3.95
556 621 0.101399 AGTTACAGATCGAGCAGCGG 59.899 55.000 2.38 0.00 41.33 5.52
559 624 1.944234 TACAGATCGAGCAGCGGCAA 61.944 55.000 12.44 0.00 44.61 4.52
580 645 7.587392 CGGCAACACATACTCAAAACATATATG 59.413 37.037 11.29 11.29 0.00 1.78
581 646 8.620416 GGCAACACATACTCAAAACATATATGA 58.380 33.333 19.63 0.00 0.00 2.15
603 668 5.824097 TGATATATCTTGCACTGCATTGTGT 59.176 36.000 13.79 0.00 38.76 3.72
726 807 4.530857 GCGGCACTAGCGGTGGAT 62.531 66.667 4.52 0.00 45.44 3.41
727 808 2.279517 CGGCACTAGCGGTGGATC 60.280 66.667 4.52 0.00 45.44 3.36
728 809 2.279517 GGCACTAGCGGTGGATCG 60.280 66.667 4.52 0.00 45.44 3.69
787 868 1.661112 GCTTAATCGTGAGCACTGTCC 59.339 52.381 0.00 0.00 36.40 4.02
789 870 2.363788 TAATCGTGAGCACTGTCCAC 57.636 50.000 0.00 0.00 0.00 4.02
790 871 0.392706 AATCGTGAGCACTGTCCACA 59.607 50.000 0.00 0.00 0.00 4.17
798 1047 0.944386 GCACTGTCCACACATTCGTT 59.056 50.000 0.00 0.00 0.00 3.85
812 1061 4.082190 CACATTCGTTAGTGGGAAGAGAGA 60.082 45.833 0.00 0.00 32.24 3.10
813 1062 4.082136 ACATTCGTTAGTGGGAAGAGAGAC 60.082 45.833 0.00 0.00 0.00 3.36
814 1063 2.082231 TCGTTAGTGGGAAGAGAGACG 58.918 52.381 0.00 0.00 0.00 4.18
822 1083 3.085533 TGGGAAGAGAGACGAGAAAGAG 58.914 50.000 0.00 0.00 0.00 2.85
824 1085 4.263374 TGGGAAGAGAGACGAGAAAGAGTA 60.263 45.833 0.00 0.00 0.00 2.59
826 1087 5.008316 GGGAAGAGAGACGAGAAAGAGTATC 59.992 48.000 0.00 0.00 0.00 2.24
827 1088 5.008316 GGAAGAGAGACGAGAAAGAGTATCC 59.992 48.000 0.00 0.00 33.66 2.59
832 1093 3.892588 AGACGAGAAAGAGTATCCATCCC 59.107 47.826 0.00 0.00 33.66 3.85
847 1108 1.967066 CATCCCTCCATCGTAGCTTCT 59.033 52.381 0.00 0.00 0.00 2.85
861 1122 0.320771 GCTTCTCCGATGGTGTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
863 1124 0.320374 TTCTCCGATGGTGTGTGTCC 59.680 55.000 0.00 0.00 0.00 4.02
864 1125 1.079127 CTCCGATGGTGTGTGTCCC 60.079 63.158 0.00 0.00 0.00 4.46
865 1126 1.535444 TCCGATGGTGTGTGTCCCT 60.535 57.895 0.00 0.00 0.00 4.20
867 1128 1.446099 CGATGGTGTGTGTCCCTCG 60.446 63.158 0.00 0.00 36.95 4.63
868 1129 1.079127 GATGGTGTGTGTCCCTCGG 60.079 63.158 0.00 0.00 0.00 4.63
869 1130 1.827399 GATGGTGTGTGTCCCTCGGT 61.827 60.000 0.00 0.00 0.00 4.69
871 1132 2.207924 GGTGTGTGTCCCTCGGTCT 61.208 63.158 0.00 0.00 0.00 3.85
878 10960 4.581824 TGTGTGTCCCTCGGTCTATATAAC 59.418 45.833 0.00 0.00 0.00 1.89
1134 11506 1.310933 GCCTTCGTCGACTACAGGGA 61.311 60.000 20.18 5.75 0.00 4.20
1855 12444 2.585900 AGGTAGGTGTCCATAGTCCAGA 59.414 50.000 0.00 0.00 0.00 3.86
1856 12445 2.694109 GGTAGGTGTCCATAGTCCAGAC 59.306 54.545 0.00 0.00 0.00 3.51
1857 12446 2.930109 AGGTGTCCATAGTCCAGACT 57.070 50.000 5.50 5.50 45.02 3.24
2639 14311 4.446385 TCAAGAAATTCGTCAAGGTACGTG 59.554 41.667 0.00 0.00 43.31 4.49
2711 14505 3.302365 ACTTTGCAAAATGGATGGACG 57.698 42.857 13.84 0.00 0.00 4.79
2754 14619 9.974980 TTTTAAACAACATGATTAAGGAGGTTC 57.025 29.630 0.00 0.00 28.71 3.62
2833 15185 1.550524 GACATGGCTAGTGAGTGACCA 59.449 52.381 0.00 0.00 34.28 4.02
2834 15186 1.276421 ACATGGCTAGTGAGTGACCAC 59.724 52.381 0.00 0.00 37.32 4.16
2839 15191 2.224305 GGCTAGTGAGTGACCACTTTGT 60.224 50.000 11.02 0.00 44.32 2.83
2840 15192 3.006537 GGCTAGTGAGTGACCACTTTGTA 59.993 47.826 11.02 0.00 44.32 2.41
2841 15193 4.238514 GCTAGTGAGTGACCACTTTGTAG 58.761 47.826 11.02 6.67 44.32 2.74
2842 15194 4.262079 GCTAGTGAGTGACCACTTTGTAGT 60.262 45.833 11.02 0.00 44.32 2.73
2843 15195 5.048224 GCTAGTGAGTGACCACTTTGTAGTA 60.048 44.000 11.02 0.01 44.32 1.82
2844 15196 6.350277 GCTAGTGAGTGACCACTTTGTAGTAT 60.350 42.308 11.02 0.00 44.32 2.12
2845 15197 6.026947 AGTGAGTGACCACTTTGTAGTATC 57.973 41.667 3.98 0.00 44.32 2.24
2889 15241 6.752351 ACTTACTGAATTGACATACTACTGCG 59.248 38.462 0.00 0.00 0.00 5.18
2977 15332 7.275183 ACTGATGCTAGCAATAGTGATTTACA 58.725 34.615 26.84 11.51 0.00 2.41
3076 15435 7.881232 AGAGAGTATATTCTCCACTAGTAGCAC 59.119 40.741 18.73 0.00 43.74 4.40
3196 15797 8.603242 TCCAGAAAAAGAATACTGTCAACTAC 57.397 34.615 0.00 0.00 0.00 2.73
3197 15798 8.429641 TCCAGAAAAAGAATACTGTCAACTACT 58.570 33.333 0.00 0.00 0.00 2.57
3198 15799 8.713271 CCAGAAAAAGAATACTGTCAACTACTC 58.287 37.037 0.00 0.00 0.00 2.59
3199 15800 8.713271 CAGAAAAAGAATACTGTCAACTACTCC 58.287 37.037 0.00 0.00 0.00 3.85
3200 15801 7.878644 AGAAAAAGAATACTGTCAACTACTCCC 59.121 37.037 0.00 0.00 0.00 4.30
3201 15802 6.936968 AAAGAATACTGTCAACTACTCCCT 57.063 37.500 0.00 0.00 0.00 4.20
3202 15803 6.532988 AAGAATACTGTCAACTACTCCCTC 57.467 41.667 0.00 0.00 0.00 4.30
3203 15804 4.957327 AGAATACTGTCAACTACTCCCTCC 59.043 45.833 0.00 0.00 0.00 4.30
3204 15805 1.546961 ACTGTCAACTACTCCCTCCG 58.453 55.000 0.00 0.00 0.00 4.63
3205 15806 1.203025 ACTGTCAACTACTCCCTCCGT 60.203 52.381 0.00 0.00 0.00 4.69
3206 15807 1.473278 CTGTCAACTACTCCCTCCGTC 59.527 57.143 0.00 0.00 0.00 4.79
3207 15808 1.075050 TGTCAACTACTCCCTCCGTCT 59.925 52.381 0.00 0.00 0.00 4.18
3208 15809 1.744522 GTCAACTACTCCCTCCGTCTC 59.255 57.143 0.00 0.00 0.00 3.36
3209 15810 1.353358 TCAACTACTCCCTCCGTCTCA 59.647 52.381 0.00 0.00 0.00 3.27
3210 15811 2.168496 CAACTACTCCCTCCGTCTCAA 58.832 52.381 0.00 0.00 0.00 3.02
3211 15812 2.561419 CAACTACTCCCTCCGTCTCAAA 59.439 50.000 0.00 0.00 0.00 2.69
3212 15813 2.885616 ACTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
3213 15814 3.442076 ACTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3214 15815 4.607239 ACTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
3215 15816 5.209659 ACTACTCCCTCCGTCTCAAAATAT 58.790 41.667 0.00 0.00 0.00 1.28
3216 15817 6.371278 ACTACTCCCTCCGTCTCAAAATATA 58.629 40.000 0.00 0.00 0.00 0.86
3217 15818 6.837568 ACTACTCCCTCCGTCTCAAAATATAA 59.162 38.462 0.00 0.00 0.00 0.98
3218 15819 6.163135 ACTCCCTCCGTCTCAAAATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
3219 15820 5.897824 ACTCCCTCCGTCTCAAAATATAAGA 59.102 40.000 0.00 0.00 0.00 2.10
3220 15821 6.383147 ACTCCCTCCGTCTCAAAATATAAGAA 59.617 38.462 0.00 0.00 0.00 2.52
3221 15822 6.579865 TCCCTCCGTCTCAAAATATAAGAAC 58.420 40.000 0.00 0.00 0.00 3.01
3222 15823 5.462398 CCCTCCGTCTCAAAATATAAGAACG 59.538 44.000 0.00 0.00 0.00 3.95
3223 15824 6.040878 CCTCCGTCTCAAAATATAAGAACGT 58.959 40.000 0.00 0.00 0.00 3.99
3224 15825 6.534079 CCTCCGTCTCAAAATATAAGAACGTT 59.466 38.462 0.00 0.00 0.00 3.99
3225 15826 7.064253 CCTCCGTCTCAAAATATAAGAACGTTT 59.936 37.037 0.46 0.00 0.00 3.60
3226 15827 7.956558 TCCGTCTCAAAATATAAGAACGTTTC 58.043 34.615 0.46 0.00 0.00 2.78
3227 15828 7.816031 TCCGTCTCAAAATATAAGAACGTTTCT 59.184 33.333 0.46 0.00 43.15 2.52
3228 15829 9.079833 CCGTCTCAAAATATAAGAACGTTTCTA 57.920 33.333 0.46 0.00 39.61 2.10
3236 15837 5.857822 ATAAGAACGTTTCTAACACCAGC 57.142 39.130 0.46 0.00 39.61 4.85
3237 15838 3.188159 AGAACGTTTCTAACACCAGCA 57.812 42.857 0.46 0.00 38.49 4.41
3238 15839 3.740115 AGAACGTTTCTAACACCAGCAT 58.260 40.909 0.46 0.00 38.49 3.79
3239 15840 4.890088 AGAACGTTTCTAACACCAGCATA 58.110 39.130 0.46 0.00 38.49 3.14
3240 15841 4.929808 AGAACGTTTCTAACACCAGCATAG 59.070 41.667 0.46 0.00 38.49 2.23
3241 15842 4.267349 ACGTTTCTAACACCAGCATAGT 57.733 40.909 0.00 0.00 0.00 2.12
3242 15843 3.994392 ACGTTTCTAACACCAGCATAGTG 59.006 43.478 0.00 0.00 41.15 2.74
3243 15844 9.773421 AGAACGTTTCTAACACCAGCATAGTGT 62.773 40.741 0.46 1.04 40.39 3.55
3250 15851 4.568152 ACACCAGCATAGTGTCAAAAAC 57.432 40.909 1.04 0.00 45.13 2.43
3251 15852 3.003275 ACACCAGCATAGTGTCAAAAACG 59.997 43.478 1.04 0.00 45.13 3.60
3252 15853 3.003275 CACCAGCATAGTGTCAAAAACGT 59.997 43.478 0.00 0.00 0.00 3.99
3253 15854 3.630312 ACCAGCATAGTGTCAAAAACGTT 59.370 39.130 0.00 0.00 0.00 3.99
3254 15855 4.219033 CCAGCATAGTGTCAAAAACGTTC 58.781 43.478 0.00 0.00 0.00 3.95
3255 15856 4.024048 CCAGCATAGTGTCAAAAACGTTCT 60.024 41.667 0.00 0.00 0.00 3.01
3256 15857 5.505654 CCAGCATAGTGTCAAAAACGTTCTT 60.506 40.000 0.00 0.00 0.00 2.52
3257 15858 6.293190 CCAGCATAGTGTCAAAAACGTTCTTA 60.293 38.462 0.00 0.00 0.00 2.10
3258 15859 7.298122 CAGCATAGTGTCAAAAACGTTCTTAT 58.702 34.615 0.00 0.00 0.00 1.73
3259 15860 8.440059 CAGCATAGTGTCAAAAACGTTCTTATA 58.560 33.333 0.00 0.00 0.00 0.98
3260 15861 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
3261 15862 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
3265 15866 8.504005 AGTGTCAAAAACGTTCTTATATTCTGG 58.496 33.333 0.00 0.00 0.00 3.86
3266 15867 7.749126 GTGTCAAAAACGTTCTTATATTCTGGG 59.251 37.037 0.00 0.00 0.00 4.45
3267 15868 7.662258 TGTCAAAAACGTTCTTATATTCTGGGA 59.338 33.333 0.00 0.00 0.00 4.37
3268 15869 7.961283 GTCAAAAACGTTCTTATATTCTGGGAC 59.039 37.037 0.00 0.00 0.00 4.46
3269 15870 7.662258 TCAAAAACGTTCTTATATTCTGGGACA 59.338 33.333 0.00 0.00 0.00 4.02
3293 15894 7.653713 ACAGAGGAAGTATTATCAAATAGCACG 59.346 37.037 0.00 0.00 0.00 5.34
3318 15919 2.998670 CAGCTAGTGATCTGTGTGGTTG 59.001 50.000 0.00 0.00 0.00 3.77
3321 15932 4.283467 AGCTAGTGATCTGTGTGGTTGTAA 59.717 41.667 0.00 0.00 0.00 2.41
3328 15939 6.149308 GTGATCTGTGTGGTTGTAATGAATGA 59.851 38.462 0.00 0.00 0.00 2.57
3341 15952 1.379527 TGAATGAGCAGCTGCAGATG 58.620 50.000 38.24 27.28 45.16 2.90
3349 15960 2.361757 AGCAGCTGCAGATGTAGACTAG 59.638 50.000 38.24 5.57 45.16 2.57
3361 15972 5.654209 AGATGTAGACTAGAGTGATGTGCAA 59.346 40.000 0.00 0.00 0.00 4.08
3366 15977 3.515630 ACTAGAGTGATGTGCAACGATG 58.484 45.455 0.00 0.00 42.39 3.84
3410 16022 3.265479 AGACTAGCCCAGCTCTGAAAAAT 59.735 43.478 0.00 0.00 40.44 1.82
3524 16136 0.891373 TCTCGCAGAAGGTGAAGAGG 59.109 55.000 0.00 0.00 35.15 3.69
3783 16412 0.745468 CTTCCTCGTAGGTAGGCACC 59.255 60.000 0.00 0.00 46.19 5.01
3796 16435 5.394224 GGTAGGCACCTAGATTCAGATAC 57.606 47.826 0.00 0.00 42.11 2.24
3798 16437 2.894126 AGGCACCTAGATTCAGATACCG 59.106 50.000 0.00 0.00 0.00 4.02
4051 16870 8.030692 TCTGTTCTTGGCATGATTTCATTTTAG 58.969 33.333 3.72 0.00 33.61 1.85
4054 16873 6.554419 TCTTGGCATGATTTCATTTTAGTCG 58.446 36.000 0.00 0.00 33.61 4.18
4393 17239 9.344772 TGGTAAGAAACACAAACTACATATGTT 57.655 29.630 14.77 0.00 35.05 2.71
4523 19423 0.885879 ATGTGTTCTACCGCTCGACA 59.114 50.000 0.00 0.00 0.00 4.35
4598 19500 6.906901 ACAAGGTAAGGGGAGACATCTAAATA 59.093 38.462 0.00 0.00 0.00 1.40
4655 19567 9.829507 ATATAGTTGATGATAAGCCTATCTTGC 57.170 33.333 4.03 0.00 35.79 4.01
4656 19568 5.312079 AGTTGATGATAAGCCTATCTTGCC 58.688 41.667 4.03 0.00 35.79 4.52
4657 19569 5.072872 AGTTGATGATAAGCCTATCTTGCCT 59.927 40.000 4.03 0.00 35.79 4.75
4749 19672 5.900339 ATTGCACGATTATACTACAACCG 57.100 39.130 0.00 0.00 0.00 4.44
4763 19686 0.875059 CAACCGAGGAGCCTCAAAAC 59.125 55.000 16.23 0.00 42.86 2.43
5082 20015 7.317842 AGAAGAACATGACATTAATCAGCTG 57.682 36.000 7.63 7.63 30.46 4.24
5382 20315 8.533657 TCAATGCAGAAAATGACCAGATTTATT 58.466 29.630 0.00 0.00 0.00 1.40
5502 20436 0.700564 TGCTGGATTTCTCCCTTGCT 59.299 50.000 0.00 0.00 41.29 3.91
5609 20543 7.999450 TTAATGTTTTGGTTATAACTCGGGT 57.001 32.000 15.05 0.00 0.00 5.28
5914 20851 5.643421 AAGATGGAATAAGCTCAGATGGT 57.357 39.130 0.00 0.00 0.00 3.55
5941 20878 2.129555 ATCAAGTTCGCCAGGGCACT 62.130 55.000 11.42 4.27 42.06 4.40
6052 20989 5.188434 AGCTTTGCTGATGATTAAGCTGTA 58.812 37.500 6.83 0.00 46.95 2.74
6056 20993 6.609237 TTGCTGATGATTAAGCTGTATGTC 57.391 37.500 0.00 0.00 40.21 3.06
6123 21068 5.674933 TGCACGTGTTAATATGAACAACA 57.325 34.783 18.38 1.88 40.88 3.33
6323 21268 4.827692 TCAAAGCATACGGACAGTACATT 58.172 39.130 0.00 0.00 38.29 2.71
6415 21360 2.011122 TCGAGACCAGAAGAACCCTT 57.989 50.000 0.00 0.00 34.81 3.95
6505 21450 2.163818 TTCCACGGTCAAAGCTGTAG 57.836 50.000 0.00 0.00 0.00 2.74
6634 21579 1.425066 TGGAAGTGGGCATTGAACTCT 59.575 47.619 0.00 0.00 0.00 3.24
6754 21699 6.382859 TGCTACCAATAAATACTGAGTCTCCA 59.617 38.462 0.00 0.00 0.00 3.86
6772 21717 2.167693 TCCACGTGAGAACACTGAGTTT 59.832 45.455 19.30 0.00 43.99 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.855021 CGTTCTTGAAAACCTGGATTAATTATT 57.145 29.630 0.00 0.00 0.00 1.40
31 32 9.238368 TCGTTCTTGAAAACCTGGATTAATTAT 57.762 29.630 0.00 0.00 0.00 1.28
32 33 8.624367 TCGTTCTTGAAAACCTGGATTAATTA 57.376 30.769 0.00 0.00 0.00 1.40
33 34 7.519032 TCGTTCTTGAAAACCTGGATTAATT 57.481 32.000 0.00 0.00 0.00 1.40
35 36 6.945938 TTCGTTCTTGAAAACCTGGATTAA 57.054 33.333 0.00 0.00 0.00 1.40
36 37 7.519032 AATTCGTTCTTGAAAACCTGGATTA 57.481 32.000 0.00 0.00 0.00 1.75
37 38 6.405278 AATTCGTTCTTGAAAACCTGGATT 57.595 33.333 0.00 0.00 0.00 3.01
38 39 6.215845 CAAATTCGTTCTTGAAAACCTGGAT 58.784 36.000 0.00 0.00 0.00 3.41
39 40 5.587289 CAAATTCGTTCTTGAAAACCTGGA 58.413 37.500 0.00 0.00 0.00 3.86
40 41 4.209080 GCAAATTCGTTCTTGAAAACCTGG 59.791 41.667 0.00 0.00 0.00 4.45
41 42 5.043248 AGCAAATTCGTTCTTGAAAACCTG 58.957 37.500 0.00 0.00 0.00 4.00
42 43 5.262588 AGCAAATTCGTTCTTGAAAACCT 57.737 34.783 0.00 0.00 0.00 3.50
43 44 5.117135 GCTAGCAAATTCGTTCTTGAAAACC 59.883 40.000 10.63 0.00 0.00 3.27
44 45 5.915196 AGCTAGCAAATTCGTTCTTGAAAAC 59.085 36.000 18.83 0.00 0.00 2.43
45 46 6.072112 AGCTAGCAAATTCGTTCTTGAAAA 57.928 33.333 18.83 0.00 0.00 2.29
46 47 5.689383 AGCTAGCAAATTCGTTCTTGAAA 57.311 34.783 18.83 0.00 0.00 2.69
47 48 5.163992 CGTAGCTAGCAAATTCGTTCTTGAA 60.164 40.000 18.83 0.00 0.00 2.69
48 49 4.326278 CGTAGCTAGCAAATTCGTTCTTGA 59.674 41.667 18.83 0.00 0.00 3.02
49 50 4.091509 ACGTAGCTAGCAAATTCGTTCTTG 59.908 41.667 18.83 0.00 0.00 3.02
50 51 4.243270 ACGTAGCTAGCAAATTCGTTCTT 58.757 39.130 18.83 0.00 0.00 2.52
51 52 3.846360 ACGTAGCTAGCAAATTCGTTCT 58.154 40.909 18.83 0.00 0.00 3.01
52 53 4.027050 GGTACGTAGCTAGCAAATTCGTTC 60.027 45.833 18.83 15.28 0.00 3.95
54 55 3.119388 TGGTACGTAGCTAGCAAATTCGT 60.119 43.478 23.89 19.35 0.00 3.85
55 56 3.441163 TGGTACGTAGCTAGCAAATTCG 58.559 45.455 23.89 14.97 0.00 3.34
57 58 5.878116 TCAATTGGTACGTAGCTAGCAAATT 59.122 36.000 23.89 17.18 36.06 1.82
58 59 5.424757 TCAATTGGTACGTAGCTAGCAAAT 58.575 37.500 23.89 12.71 36.06 2.32
59 60 4.823157 TCAATTGGTACGTAGCTAGCAAA 58.177 39.130 23.89 11.03 36.06 3.68
60 61 4.459390 TCAATTGGTACGTAGCTAGCAA 57.541 40.909 23.89 13.91 36.54 3.91
62 63 4.617959 TCATCAATTGGTACGTAGCTAGC 58.382 43.478 23.89 6.62 0.00 3.42
64 65 5.353938 GGTTCATCAATTGGTACGTAGCTA 58.646 41.667 23.89 17.76 0.00 3.32
65 66 4.189231 GGTTCATCAATTGGTACGTAGCT 58.811 43.478 23.89 3.53 0.00 3.32
66 67 3.000925 CGGTTCATCAATTGGTACGTAGC 59.999 47.826 17.67 17.67 0.00 3.58
67 68 3.000925 GCGGTTCATCAATTGGTACGTAG 59.999 47.826 5.42 0.00 0.00 3.51
68 69 2.931325 GCGGTTCATCAATTGGTACGTA 59.069 45.455 5.42 0.00 0.00 3.57
69 70 1.735571 GCGGTTCATCAATTGGTACGT 59.264 47.619 5.42 0.00 0.00 3.57
70 71 1.267334 CGCGGTTCATCAATTGGTACG 60.267 52.381 5.42 3.00 0.00 3.67
71 72 2.004017 TCGCGGTTCATCAATTGGTAC 58.996 47.619 6.13 0.00 0.00 3.34
72 73 2.388310 TCGCGGTTCATCAATTGGTA 57.612 45.000 6.13 0.00 0.00 3.25
74 75 1.670295 TCATCGCGGTTCATCAATTGG 59.330 47.619 6.13 0.00 0.00 3.16
75 76 3.614159 ATCATCGCGGTTCATCAATTG 57.386 42.857 6.13 0.00 0.00 2.32
76 77 5.702670 AGATTATCATCGCGGTTCATCAATT 59.297 36.000 6.13 0.00 34.17 2.32
77 78 5.240891 AGATTATCATCGCGGTTCATCAAT 58.759 37.500 6.13 0.00 34.17 2.57
78 79 4.631131 AGATTATCATCGCGGTTCATCAA 58.369 39.130 6.13 0.00 34.17 2.57
79 80 4.257267 AGATTATCATCGCGGTTCATCA 57.743 40.909 6.13 0.00 34.17 3.07
80 81 4.686091 TCAAGATTATCATCGCGGTTCATC 59.314 41.667 6.13 1.00 34.17 2.92
81 82 4.449068 GTCAAGATTATCATCGCGGTTCAT 59.551 41.667 6.13 0.00 34.17 2.57
82 83 3.802139 GTCAAGATTATCATCGCGGTTCA 59.198 43.478 6.13 0.00 34.17 3.18
83 84 3.802139 TGTCAAGATTATCATCGCGGTTC 59.198 43.478 6.13 0.00 34.17 3.62
84 85 3.792401 TGTCAAGATTATCATCGCGGTT 58.208 40.909 6.13 0.00 34.17 4.44
86 87 4.997905 ATTGTCAAGATTATCATCGCGG 57.002 40.909 6.13 0.00 34.17 6.46
87 88 6.003505 CGTTATTGTCAAGATTATCATCGCG 58.996 40.000 0.00 0.00 34.17 5.87
88 89 7.105494 TCGTTATTGTCAAGATTATCATCGC 57.895 36.000 0.00 0.00 34.17 4.58
89 90 7.685712 GCATCGTTATTGTCAAGATTATCATCG 59.314 37.037 0.00 0.00 34.17 3.84
90 91 8.498358 TGCATCGTTATTGTCAAGATTATCATC 58.502 33.333 0.00 0.00 0.00 2.92
93 94 8.285394 ACATGCATCGTTATTGTCAAGATTATC 58.715 33.333 0.00 0.00 0.00 1.75
95 96 7.552458 ACATGCATCGTTATTGTCAAGATTA 57.448 32.000 0.00 0.00 0.00 1.75
96 97 6.441093 ACATGCATCGTTATTGTCAAGATT 57.559 33.333 0.00 0.00 0.00 2.40
98 99 5.878332 AACATGCATCGTTATTGTCAAGA 57.122 34.783 11.30 0.00 0.00 3.02
99 100 6.541969 TGTAACATGCATCGTTATTGTCAAG 58.458 36.000 18.37 0.00 31.85 3.02
100 101 6.487689 TGTAACATGCATCGTTATTGTCAA 57.512 33.333 18.37 0.00 31.85 3.18
102 103 5.909054 CCATGTAACATGCATCGTTATTGTC 59.091 40.000 18.37 10.36 31.85 3.18
104 105 6.058827 TCCATGTAACATGCATCGTTATTG 57.941 37.500 18.37 17.51 31.85 1.90
105 106 6.318648 ACTTCCATGTAACATGCATCGTTATT 59.681 34.615 18.37 10.69 31.85 1.40
106 107 5.822519 ACTTCCATGTAACATGCATCGTTAT 59.177 36.000 18.37 7.69 31.85 1.89
108 109 4.009675 ACTTCCATGTAACATGCATCGTT 58.990 39.130 15.56 15.56 0.00 3.85
109 110 3.374988 CACTTCCATGTAACATGCATCGT 59.625 43.478 0.00 0.00 0.00 3.73
111 112 4.395854 TGTCACTTCCATGTAACATGCATC 59.604 41.667 0.00 0.00 0.00 3.91
112 113 4.156556 GTGTCACTTCCATGTAACATGCAT 59.843 41.667 0.00 0.00 0.00 3.96
116 117 3.994392 GTCGTGTCACTTCCATGTAACAT 59.006 43.478 0.65 0.00 0.00 2.71
117 118 3.069016 AGTCGTGTCACTTCCATGTAACA 59.931 43.478 0.65 0.00 0.00 2.41
119 120 3.572682 AGAGTCGTGTCACTTCCATGTAA 59.427 43.478 0.65 0.00 0.00 2.41
120 121 3.057526 CAGAGTCGTGTCACTTCCATGTA 60.058 47.826 0.65 0.00 0.00 2.29
121 122 1.964223 AGAGTCGTGTCACTTCCATGT 59.036 47.619 0.65 0.00 0.00 3.21
123 124 1.964223 ACAGAGTCGTGTCACTTCCAT 59.036 47.619 0.65 0.00 0.00 3.41
124 125 1.399714 ACAGAGTCGTGTCACTTCCA 58.600 50.000 0.65 0.00 0.00 3.53
126 127 4.421033 TGATACAGAGTCGTGTCACTTC 57.579 45.455 0.65 0.00 32.77 3.01
127 128 5.164233 CAATGATACAGAGTCGTGTCACTT 58.836 41.667 13.57 8.76 39.44 3.16
128 129 4.738124 CAATGATACAGAGTCGTGTCACT 58.262 43.478 13.57 4.21 39.44 3.41
129 130 3.304559 GCAATGATACAGAGTCGTGTCAC 59.695 47.826 13.57 0.00 39.44 3.67
130 131 3.511699 GCAATGATACAGAGTCGTGTCA 58.488 45.455 13.63 13.63 40.66 3.58
132 133 2.163613 TCGCAATGATACAGAGTCGTGT 59.836 45.455 0.00 1.70 34.21 4.49
133 134 2.797491 TCGCAATGATACAGAGTCGTG 58.203 47.619 0.00 0.00 0.00 4.35
134 135 3.375642 CATCGCAATGATACAGAGTCGT 58.624 45.455 0.00 0.00 34.83 4.34
137 138 2.868583 GTGCATCGCAATGATACAGAGT 59.131 45.455 0.00 0.00 41.47 3.24
162 165 0.099968 CCGTGTCGTGTCGATATGGT 59.900 55.000 15.45 0.00 44.94 3.55
184 187 1.350193 GTGTATATGATCGGCGCCAG 58.650 55.000 28.98 19.33 0.00 4.85
185 188 0.037697 GGTGTATATGATCGGCGCCA 60.038 55.000 28.98 14.46 0.00 5.69
186 189 1.076533 CGGTGTATATGATCGGCGCC 61.077 60.000 19.07 19.07 0.00 6.53
187 190 0.388134 ACGGTGTATATGATCGGCGC 60.388 55.000 0.00 0.00 0.00 6.53
188 191 2.905959 TACGGTGTATATGATCGGCG 57.094 50.000 0.00 0.00 0.00 6.46
211 220 7.391786 CAAGCTAGATCACACGTTTATTACAC 58.608 38.462 0.00 0.00 0.00 2.90
213 222 6.255887 AGCAAGCTAGATCACACGTTTATTAC 59.744 38.462 0.00 0.00 0.00 1.89
234 259 5.181245 GGAACAAACTGATTACAGCTAGCAA 59.819 40.000 18.83 2.53 46.95 3.91
235 260 4.695455 GGAACAAACTGATTACAGCTAGCA 59.305 41.667 18.83 0.00 46.95 3.49
236 261 4.095036 GGGAACAAACTGATTACAGCTAGC 59.905 45.833 6.62 6.62 46.95 3.42
237 262 4.330074 CGGGAACAAACTGATTACAGCTAG 59.670 45.833 0.00 0.00 46.95 3.42
238 263 4.250464 CGGGAACAAACTGATTACAGCTA 58.750 43.478 0.00 0.00 46.95 3.32
245 270 4.202111 CCTGAAAACGGGAACAAACTGATT 60.202 41.667 0.00 0.00 0.00 2.57
253 278 0.821711 CCTGCCTGAAAACGGGAACA 60.822 55.000 0.00 0.00 33.88 3.18
279 304 1.671742 CTCACGTACCCTGCCACTT 59.328 57.895 0.00 0.00 0.00 3.16
288 313 2.103736 GCTACCCGCTCACGTACC 59.896 66.667 0.00 0.00 37.70 3.34
303 332 1.650912 CAACACGCTTGCTTGAGCT 59.349 52.632 6.11 0.00 40.52 4.09
324 353 0.249398 GCGAAAAGACAGGGGAGCTA 59.751 55.000 0.00 0.00 0.00 3.32
325 354 1.003233 GCGAAAAGACAGGGGAGCT 60.003 57.895 0.00 0.00 0.00 4.09
360 405 1.383523 CTTAGCTTAGCTTGGTGCCC 58.616 55.000 13.44 0.00 44.23 5.36
372 417 7.387948 TGTTAATTTTCTTCTCGAGCTTAGCTT 59.612 33.333 8.58 0.00 39.88 3.74
397 442 3.058224 CCCGCTTTAGTTTGTTCCTTCTG 60.058 47.826 0.00 0.00 0.00 3.02
407 465 1.802365 CTACGTTGCCCGCTTTAGTTT 59.198 47.619 0.00 0.00 41.42 2.66
417 475 3.419759 CACGCACCTACGTTGCCC 61.420 66.667 5.18 0.00 45.75 5.36
427 485 1.254975 AATTAAAGGGGGCACGCACC 61.255 55.000 5.55 0.21 45.96 5.01
430 492 0.738975 GAGAATTAAAGGGGGCACGC 59.261 55.000 0.00 0.00 42.17 5.34
450 512 4.512484 GTGGAAGAAGAGGAAGAAGATGG 58.488 47.826 0.00 0.00 0.00 3.51
456 518 1.152271 AGGGGTGGAAGAAGAGGAAGA 59.848 52.381 0.00 0.00 0.00 2.87
458 520 1.362224 CAGGGGTGGAAGAAGAGGAA 58.638 55.000 0.00 0.00 0.00 3.36
461 523 1.301293 GCCAGGGGTGGAAGAAGAG 59.699 63.158 0.00 0.00 0.00 2.85
470 532 3.886550 GAAAGGGTGGCCAGGGGTG 62.887 68.421 5.11 0.00 0.00 4.61
492 554 2.560105 CAGGAAGAAAAGCAAAGGGAGG 59.440 50.000 0.00 0.00 0.00 4.30
499 561 2.872245 CGTCACTCAGGAAGAAAAGCAA 59.128 45.455 0.00 0.00 0.00 3.91
580 645 6.204301 AGACACAATGCAGTGCAAGATATATC 59.796 38.462 23.90 13.46 43.62 1.63
581 646 6.017357 CAGACACAATGCAGTGCAAGATATAT 60.017 38.462 23.90 0.00 43.62 0.86
582 647 5.295045 CAGACACAATGCAGTGCAAGATATA 59.705 40.000 23.90 0.00 43.62 0.86
588 653 1.334556 GACAGACACAATGCAGTGCAA 59.665 47.619 23.90 5.75 43.62 4.08
603 668 2.933495 CGGAATTCGTAGTGGACAGA 57.067 50.000 0.00 0.00 0.00 3.41
696 776 2.359478 GCCGCGGAAAAGGAAGGA 60.359 61.111 33.48 0.00 0.00 3.36
721 802 1.596477 GATGAGGGCTGCGATCCAC 60.596 63.158 0.00 0.00 0.00 4.02
724 805 3.040763 GCGATGAGGGCTGCGATC 61.041 66.667 0.00 0.00 0.00 3.69
787 868 3.659786 TCTTCCCACTAACGAATGTGTG 58.340 45.455 0.00 0.00 32.76 3.82
789 870 4.082190 TCTCTCTTCCCACTAACGAATGTG 60.082 45.833 0.00 0.00 0.00 3.21
790 871 4.082136 GTCTCTCTTCCCACTAACGAATGT 60.082 45.833 0.00 0.00 0.00 2.71
798 1047 3.715638 TTCTCGTCTCTCTTCCCACTA 57.284 47.619 0.00 0.00 0.00 2.74
812 1061 3.892588 GAGGGATGGATACTCTTTCTCGT 59.107 47.826 0.00 0.00 37.61 4.18
813 1062 3.257127 GGAGGGATGGATACTCTTTCTCG 59.743 52.174 0.00 0.00 37.61 4.04
814 1063 4.227197 TGGAGGGATGGATACTCTTTCTC 58.773 47.826 0.00 0.00 37.61 2.87
822 1083 2.166664 GCTACGATGGAGGGATGGATAC 59.833 54.545 0.00 0.00 0.00 2.24
824 1085 1.203237 AGCTACGATGGAGGGATGGAT 60.203 52.381 0.00 0.00 0.00 3.41
826 1087 1.001406 GAAGCTACGATGGAGGGATGG 59.999 57.143 0.00 0.00 0.00 3.51
827 1088 1.967066 AGAAGCTACGATGGAGGGATG 59.033 52.381 0.00 0.00 0.00 3.51
832 1093 1.309950 TCGGAGAAGCTACGATGGAG 58.690 55.000 0.00 0.00 42.31 3.86
847 1108 1.535444 AGGGACACACACCATCGGA 60.535 57.895 0.00 0.00 0.00 4.55
853 1114 0.896940 TAGACCGAGGGACACACACC 60.897 60.000 0.00 0.00 0.00 4.16
861 1122 3.072915 TCGTGGTTATATAGACCGAGGGA 59.927 47.826 8.59 3.07 40.13 4.20
863 1124 5.399858 CAATCGTGGTTATATAGACCGAGG 58.600 45.833 8.59 0.00 40.13 4.63
864 1125 4.857588 GCAATCGTGGTTATATAGACCGAG 59.142 45.833 8.59 6.20 40.13 4.63
865 1126 4.521639 AGCAATCGTGGTTATATAGACCGA 59.478 41.667 8.59 0.00 40.13 4.69
867 1128 5.989777 ACAAGCAATCGTGGTTATATAGACC 59.010 40.000 6.99 6.99 43.55 3.85
868 1129 6.564125 GCACAAGCAATCGTGGTTATATAGAC 60.564 42.308 0.00 0.00 43.55 2.59
869 1130 5.465390 GCACAAGCAATCGTGGTTATATAGA 59.535 40.000 0.00 0.00 43.55 1.98
871 1132 4.513692 GGCACAAGCAATCGTGGTTATATA 59.486 41.667 0.00 0.00 43.55 0.86
878 10960 3.353600 TGGCACAAGCAATCGTGG 58.646 55.556 0.00 0.00 44.61 4.94
1134 11506 3.055240 CCTCTTGATGAGCTTCTTGAGGT 60.055 47.826 14.04 0.00 41.35 3.85
2022 13669 0.750182 GTCAGAGACTCCTCCTCCGG 60.750 65.000 0.00 0.00 40.30 5.14
2639 14311 5.107065 GGGCAGAGTATGTTAATTATGACGC 60.107 44.000 0.00 0.00 0.00 5.19
2711 14505 6.316890 TGTTTAAAACACTCTACACTGTTCCC 59.683 38.462 0.00 0.00 36.25 3.97
2833 15185 6.127507 GGACGACCCTAAAGATACTACAAAGT 60.128 42.308 0.00 0.00 39.91 2.66
2834 15186 6.096564 AGGACGACCCTAAAGATACTACAAAG 59.903 42.308 0.00 0.00 45.48 2.77
2839 15191 6.100279 TCACTAGGACGACCCTAAAGATACTA 59.900 42.308 0.00 0.00 46.43 1.82
2840 15192 5.104193 TCACTAGGACGACCCTAAAGATACT 60.104 44.000 0.00 0.00 46.43 2.12
2841 15193 5.008514 GTCACTAGGACGACCCTAAAGATAC 59.991 48.000 0.00 0.00 46.43 2.24
2842 15194 5.128919 GTCACTAGGACGACCCTAAAGATA 58.871 45.833 0.00 0.00 46.43 1.98
2843 15195 3.952967 GTCACTAGGACGACCCTAAAGAT 59.047 47.826 0.00 0.00 46.43 2.40
2844 15196 3.350833 GTCACTAGGACGACCCTAAAGA 58.649 50.000 0.00 3.56 46.43 2.52
2845 15197 3.779271 GTCACTAGGACGACCCTAAAG 57.221 52.381 0.00 0.00 46.43 1.85
2889 15241 3.129871 CAGAGCTAGGCTAGTGCAAATC 58.870 50.000 21.92 10.87 39.88 2.17
2918 15271 6.427974 CATGTCAGTTCTATTGCTAGCATTG 58.572 40.000 20.13 11.66 0.00 2.82
2977 15332 8.537728 TCCATTTTCCAAAGTATGCATATTCT 57.462 30.769 10.16 0.00 0.00 2.40
2985 15340 4.161942 TGGCCATCCATTTTCCAAAGTATG 59.838 41.667 0.00 0.00 37.47 2.39
3196 15797 6.406692 TCTTATATTTTGAGACGGAGGGAG 57.593 41.667 0.00 0.00 0.00 4.30
3197 15798 6.579865 GTTCTTATATTTTGAGACGGAGGGA 58.420 40.000 0.00 0.00 0.00 4.20
3198 15799 5.462398 CGTTCTTATATTTTGAGACGGAGGG 59.538 44.000 0.00 0.00 0.00 4.30
3199 15800 6.040878 ACGTTCTTATATTTTGAGACGGAGG 58.959 40.000 0.00 0.00 0.00 4.30
3200 15801 7.521509 AACGTTCTTATATTTTGAGACGGAG 57.478 36.000 0.00 0.00 0.00 4.63
3201 15802 7.816031 AGAAACGTTCTTATATTTTGAGACGGA 59.184 33.333 0.00 0.00 36.36 4.69
3202 15803 7.960793 AGAAACGTTCTTATATTTTGAGACGG 58.039 34.615 0.00 0.00 36.36 4.79
3210 15811 8.448615 GCTGGTGTTAGAAACGTTCTTATATTT 58.551 33.333 0.00 0.00 41.14 1.40
3211 15812 7.604927 TGCTGGTGTTAGAAACGTTCTTATATT 59.395 33.333 0.00 0.00 41.14 1.28
3212 15813 7.101054 TGCTGGTGTTAGAAACGTTCTTATAT 58.899 34.615 0.00 0.00 41.14 0.86
3213 15814 6.457355 TGCTGGTGTTAGAAACGTTCTTATA 58.543 36.000 0.00 0.00 41.14 0.98
3214 15815 5.302360 TGCTGGTGTTAGAAACGTTCTTAT 58.698 37.500 0.00 0.00 41.14 1.73
3215 15816 4.695396 TGCTGGTGTTAGAAACGTTCTTA 58.305 39.130 0.00 0.00 41.14 2.10
3216 15817 3.537580 TGCTGGTGTTAGAAACGTTCTT 58.462 40.909 0.00 0.00 41.14 2.52
3217 15818 3.188159 TGCTGGTGTTAGAAACGTTCT 57.812 42.857 0.00 3.32 43.72 3.01
3218 15819 4.689345 ACTATGCTGGTGTTAGAAACGTTC 59.311 41.667 0.00 0.00 0.00 3.95
3219 15820 4.451096 CACTATGCTGGTGTTAGAAACGTT 59.549 41.667 0.00 0.00 0.00 3.99
3220 15821 3.994392 CACTATGCTGGTGTTAGAAACGT 59.006 43.478 0.00 0.00 0.00 3.99
3221 15822 3.994392 ACACTATGCTGGTGTTAGAAACG 59.006 43.478 4.58 0.00 44.25 3.60
3222 15823 4.994852 TGACACTATGCTGGTGTTAGAAAC 59.005 41.667 10.21 0.00 46.23 2.78
3223 15824 5.222079 TGACACTATGCTGGTGTTAGAAA 57.778 39.130 10.21 0.00 46.23 2.52
3224 15825 4.882842 TGACACTATGCTGGTGTTAGAA 57.117 40.909 10.21 0.00 46.23 2.10
3225 15826 4.882842 TTGACACTATGCTGGTGTTAGA 57.117 40.909 10.21 0.42 46.23 2.10
3226 15827 5.940192 TTTTGACACTATGCTGGTGTTAG 57.060 39.130 10.21 0.00 46.23 2.34
3227 15828 5.277586 CGTTTTTGACACTATGCTGGTGTTA 60.278 40.000 10.21 5.06 46.23 2.41
3228 15829 4.497340 CGTTTTTGACACTATGCTGGTGTT 60.497 41.667 10.21 0.00 46.23 3.32
3230 15831 3.003275 ACGTTTTTGACACTATGCTGGTG 59.997 43.478 0.00 0.00 40.19 4.17
3231 15832 3.211045 ACGTTTTTGACACTATGCTGGT 58.789 40.909 0.00 0.00 0.00 4.00
3232 15833 3.896648 ACGTTTTTGACACTATGCTGG 57.103 42.857 0.00 0.00 0.00 4.85
3233 15834 5.095691 AGAACGTTTTTGACACTATGCTG 57.904 39.130 0.46 0.00 0.00 4.41
3234 15835 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
3235 15836 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
3239 15840 8.504005 CCAGAATATAAGAACGTTTTTGACACT 58.496 33.333 13.87 4.79 0.00 3.55
3240 15841 7.749126 CCCAGAATATAAGAACGTTTTTGACAC 59.251 37.037 13.87 2.84 0.00 3.67
3241 15842 7.662258 TCCCAGAATATAAGAACGTTTTTGACA 59.338 33.333 13.87 0.01 0.00 3.58
3242 15843 7.961283 GTCCCAGAATATAAGAACGTTTTTGAC 59.039 37.037 13.87 5.89 0.00 3.18
3243 15844 7.662258 TGTCCCAGAATATAAGAACGTTTTTGA 59.338 33.333 13.87 2.81 0.00 2.69
3244 15845 7.812648 TGTCCCAGAATATAAGAACGTTTTTG 58.187 34.615 13.87 0.00 0.00 2.44
3245 15846 7.881232 TCTGTCCCAGAATATAAGAACGTTTTT 59.119 33.333 9.22 9.22 37.57 1.94
3246 15847 7.391620 TCTGTCCCAGAATATAAGAACGTTTT 58.608 34.615 0.46 0.00 37.57 2.43
3247 15848 6.942976 TCTGTCCCAGAATATAAGAACGTTT 58.057 36.000 0.46 0.00 37.57 3.60
3248 15849 6.407074 CCTCTGTCCCAGAATATAAGAACGTT 60.407 42.308 0.00 0.00 40.18 3.99
3249 15850 5.069251 CCTCTGTCCCAGAATATAAGAACGT 59.931 44.000 0.00 0.00 40.18 3.99
3250 15851 5.302059 TCCTCTGTCCCAGAATATAAGAACG 59.698 44.000 0.00 0.00 40.18 3.95
3251 15852 6.732896 TCCTCTGTCCCAGAATATAAGAAC 57.267 41.667 0.00 0.00 40.18 3.01
3252 15853 6.903534 ACTTCCTCTGTCCCAGAATATAAGAA 59.096 38.462 0.00 0.00 40.18 2.52
3253 15854 6.444704 ACTTCCTCTGTCCCAGAATATAAGA 58.555 40.000 0.00 0.00 40.18 2.10
3254 15855 6.739331 ACTTCCTCTGTCCCAGAATATAAG 57.261 41.667 0.00 0.85 40.18 1.73
3255 15856 8.798975 AATACTTCCTCTGTCCCAGAATATAA 57.201 34.615 0.00 0.00 40.18 0.98
3257 15858 8.980832 ATAATACTTCCTCTGTCCCAGAATAT 57.019 34.615 0.00 0.00 40.18 1.28
3258 15859 8.010697 TGATAATACTTCCTCTGTCCCAGAATA 58.989 37.037 0.00 0.00 40.18 1.75
3259 15860 6.846505 TGATAATACTTCCTCTGTCCCAGAAT 59.153 38.462 0.00 0.00 40.18 2.40
3260 15861 6.202331 TGATAATACTTCCTCTGTCCCAGAA 58.798 40.000 0.00 0.00 40.18 3.02
3261 15862 5.777449 TGATAATACTTCCTCTGTCCCAGA 58.223 41.667 0.00 0.00 38.25 3.86
3262 15863 6.485830 TTGATAATACTTCCTCTGTCCCAG 57.514 41.667 0.00 0.00 0.00 4.45
3263 15864 6.884472 TTTGATAATACTTCCTCTGTCCCA 57.116 37.500 0.00 0.00 0.00 4.37
3264 15865 7.604545 GCTATTTGATAATACTTCCTCTGTCCC 59.395 40.741 0.00 0.00 0.00 4.46
3265 15866 8.150945 TGCTATTTGATAATACTTCCTCTGTCC 58.849 37.037 0.00 0.00 0.00 4.02
3266 15867 8.983724 GTGCTATTTGATAATACTTCCTCTGTC 58.016 37.037 0.00 0.00 0.00 3.51
3267 15868 7.653713 CGTGCTATTTGATAATACTTCCTCTGT 59.346 37.037 0.00 0.00 0.00 3.41
3268 15869 7.116948 CCGTGCTATTTGATAATACTTCCTCTG 59.883 40.741 0.00 0.00 0.00 3.35
3269 15870 7.155328 CCGTGCTATTTGATAATACTTCCTCT 58.845 38.462 0.00 0.00 0.00 3.69
3270 15871 6.128526 GCCGTGCTATTTGATAATACTTCCTC 60.129 42.308 0.00 0.00 0.00 3.71
3271 15872 5.701290 GCCGTGCTATTTGATAATACTTCCT 59.299 40.000 0.00 0.00 0.00 3.36
3272 15873 5.701290 AGCCGTGCTATTTGATAATACTTCC 59.299 40.000 0.00 0.00 36.99 3.46
3273 15874 6.423905 TGAGCCGTGCTATTTGATAATACTTC 59.576 38.462 0.00 0.00 39.88 3.01
3274 15875 6.288294 TGAGCCGTGCTATTTGATAATACTT 58.712 36.000 0.00 0.00 39.88 2.24
3275 15876 5.853936 TGAGCCGTGCTATTTGATAATACT 58.146 37.500 0.00 0.00 39.88 2.12
3276 15877 5.389935 GCTGAGCCGTGCTATTTGATAATAC 60.390 44.000 0.00 0.00 39.88 1.89
3277 15878 4.690748 GCTGAGCCGTGCTATTTGATAATA 59.309 41.667 0.00 0.00 39.88 0.98
3293 15894 1.480137 ACACAGATCACTAGCTGAGCC 59.520 52.381 0.00 0.00 41.85 4.70
3318 15919 2.941064 TCTGCAGCTGCTCATTCATTAC 59.059 45.455 36.61 6.43 42.66 1.89
3321 15932 1.950216 CATCTGCAGCTGCTCATTCAT 59.050 47.619 36.61 17.18 42.66 2.57
3328 15939 1.193323 AGTCTACATCTGCAGCTGCT 58.807 50.000 36.61 20.43 42.66 4.24
3341 15952 4.099120 CGTTGCACATCACTCTAGTCTAC 58.901 47.826 0.00 0.00 0.00 2.59
3349 15960 1.442769 ACCATCGTTGCACATCACTC 58.557 50.000 0.00 0.00 0.00 3.51
3361 15972 2.358267 GCTACTACTGCAGTACCATCGT 59.642 50.000 22.67 19.31 38.80 3.73
3366 15977 3.192844 TCTGTTGCTACTACTGCAGTACC 59.807 47.826 22.67 11.39 41.71 3.34
3494 16106 0.391597 TCTGCGAGAAAAGGTCCGTT 59.608 50.000 0.00 0.00 0.00 4.44
3574 16186 6.748198 CGTGTCTTATAGGTCTGAAACTCTTC 59.252 42.308 0.00 0.00 0.00 2.87
3783 16412 6.809196 GGTAGAATTGCGGTATCTGAATCTAG 59.191 42.308 0.00 0.00 0.00 2.43
3786 16415 5.297547 TGGTAGAATTGCGGTATCTGAATC 58.702 41.667 0.00 0.00 0.00 2.52
3794 16428 3.707611 AGGTACATGGTAGAATTGCGGTA 59.292 43.478 0.00 0.00 0.00 4.02
3796 16435 3.194005 AGGTACATGGTAGAATTGCGG 57.806 47.619 0.00 0.00 0.00 5.69
4051 16870 7.489757 GCATCCCTAACAATCTAAGATATCGAC 59.510 40.741 0.00 0.00 0.00 4.20
4054 16873 8.317679 ACTGCATCCCTAACAATCTAAGATATC 58.682 37.037 0.00 0.00 0.00 1.63
4393 17239 4.600692 TCGAAAGTCATCTTCTGGTTCA 57.399 40.909 0.00 0.00 32.90 3.18
4523 19423 0.948623 TGCGCATGAAGCAGTAACGT 60.949 50.000 5.66 0.00 46.13 3.99
4611 19513 4.818534 ATATGTTCATAGCTGTTTGGCG 57.181 40.909 0.00 0.00 37.29 5.69
4649 19561 2.042162 ACCTGGATCACAAAGGCAAGAT 59.958 45.455 0.00 0.00 34.18 2.40
4650 19562 1.425066 ACCTGGATCACAAAGGCAAGA 59.575 47.619 0.00 0.00 34.18 3.02
4652 19564 2.158475 AGAACCTGGATCACAAAGGCAA 60.158 45.455 0.00 0.00 34.18 4.52
4653 19565 1.425066 AGAACCTGGATCACAAAGGCA 59.575 47.619 0.00 0.00 34.18 4.75
4654 19566 1.815003 CAGAACCTGGATCACAAAGGC 59.185 52.381 0.00 0.00 34.18 4.35
4655 19567 3.423539 TCAGAACCTGGATCACAAAGG 57.576 47.619 0.00 0.00 37.11 3.11
4656 19568 3.693085 CCATCAGAACCTGGATCACAAAG 59.307 47.826 0.00 0.00 34.24 2.77
4657 19569 3.689347 CCATCAGAACCTGGATCACAAA 58.311 45.455 0.00 0.00 34.24 2.83
4749 19672 0.519077 CTTGCGTTTTGAGGCTCCTC 59.481 55.000 12.86 8.95 43.01 3.71
4763 19686 5.344207 AGTTTAGCTTGTAAGAACTTGCG 57.656 39.130 0.00 0.00 32.48 4.85
5061 19994 4.337555 GCCAGCTGATTAATGTCATGTTCT 59.662 41.667 17.39 0.00 0.00 3.01
5082 20015 1.376609 CGTACTTCCCAGCATTGGCC 61.377 60.000 0.00 0.00 43.58 5.36
5400 20334 6.106648 AGCACTAGATTTAGCATCTGCATA 57.893 37.500 4.79 0.00 45.16 3.14
5502 20436 3.293337 TCGTCGGATTATCTCCAAGGAA 58.707 45.455 0.00 0.00 45.24 3.36
5609 20543 4.717877 CCTGCAATCCAGTCAACCATATA 58.282 43.478 0.00 0.00 40.06 0.86
5914 20851 2.419673 CTGGCGAACTTGATACAATGCA 59.580 45.455 0.00 0.00 0.00 3.96
5941 20878 0.179702 CCAGAATGCCTCAGCTAGCA 59.820 55.000 18.83 7.61 44.45 3.49
6052 20989 2.009051 CACACACACACACACAGACAT 58.991 47.619 0.00 0.00 0.00 3.06
6056 20993 1.128507 GACACACACACACACACACAG 59.871 52.381 0.00 0.00 0.00 3.66
6123 21068 6.405538 ACCATTGTTCAAAATCAGTTGTTGT 58.594 32.000 0.00 0.00 0.00 3.32
6323 21268 5.919707 GTGTGCATCATGTGACATGTAAAAA 59.080 36.000 23.39 5.94 0.00 1.94
6415 21360 6.712095 GCCCTACATTTGATTACTCATCATCA 59.288 38.462 0.00 0.00 41.82 3.07
6505 21450 1.001706 GAAGAAGGCGTCCAACAAACC 60.002 52.381 0.00 0.00 0.00 3.27
6534 21479 2.836262 TGGGCTTGTTTGCTTTTGATG 58.164 42.857 0.00 0.00 0.00 3.07
6535 21480 3.775261 ATGGGCTTGTTTGCTTTTGAT 57.225 38.095 0.00 0.00 0.00 2.57
6544 21489 0.817013 CATGCGGTATGGGCTTGTTT 59.183 50.000 0.00 0.00 32.95 2.83
6634 21579 5.336372 GCTTGTTGCAACCTATGAATTACCA 60.336 40.000 26.14 0.07 42.31 3.25
6685 21630 1.444917 GGGGGCCGAAATCACGAATC 61.445 60.000 0.00 0.00 35.09 2.52
6687 21632 2.045731 GGGGGCCGAAATCACGAA 60.046 61.111 0.00 0.00 35.09 3.85
6717 21662 1.746991 GGTAGCACAGAAGGCAGGC 60.747 63.158 0.00 0.00 0.00 4.85
6763 21708 0.307760 GTGGAACGGCAAACTCAGTG 59.692 55.000 0.00 0.00 0.00 3.66
6772 21717 1.153127 AAGAAACGGTGGAACGGCA 60.153 52.632 0.00 0.00 41.39 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.