Multiple sequence alignment - TraesCS6A01G379600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G379600 chr6A 100.000 2333 0 0 1 2333 600304746 600302414 0.000000e+00 4309.0
1 TraesCS6A01G379600 chr1B 99.101 1446 12 1 1 1445 569877940 569879385 0.000000e+00 2597.0
2 TraesCS6A01G379600 chr5B 98.411 1447 21 2 1 1446 663125709 663127154 0.000000e+00 2543.0
3 TraesCS6A01G379600 chr5B 99.001 901 7 2 544 1443 684939183 684938284 0.000000e+00 1613.0
4 TraesCS6A01G379600 chr7A 97.581 1447 32 3 1 1445 735512944 735511499 0.000000e+00 2475.0
5 TraesCS6A01G379600 chr4D 96.814 1444 44 2 1 1443 355874412 355875854 0.000000e+00 2410.0
6 TraesCS6A01G379600 chr7B 95.853 1447 58 2 2 1446 210328610 210330056 0.000000e+00 2338.0
7 TraesCS6A01G379600 chr7B 97.964 786 13 3 663 1445 23956362 23955577 0.000000e+00 1360.0
8 TraesCS6A01G379600 chr3B 98.262 978 17 0 1 978 788218635 788219612 0.000000e+00 1712.0
9 TraesCS6A01G379600 chr3B 96.373 193 7 0 2107 2299 706775291 706775483 3.740000e-83 318.0
10 TraesCS6A01G379600 chr3B 95.408 196 9 0 2104 2299 28514452 28514647 1.740000e-81 313.0
11 TraesCS6A01G379600 chr3B 95.408 196 9 0 2104 2299 137748307 137748502 1.740000e-81 313.0
12 TraesCS6A01G379600 chrUn 97.692 910 20 1 536 1444 48419689 48418780 0.000000e+00 1563.0
13 TraesCS6A01G379600 chr5A 94.240 1007 55 3 193 1198 561138146 561139150 0.000000e+00 1535.0
14 TraesCS6A01G379600 chr5A 77.672 842 173 15 5 839 698494141 698494974 1.240000e-137 499.0
15 TraesCS6A01G379600 chr5A 76.960 842 180 14 5 839 395764621 395765455 3.510000e-128 468.0
16 TraesCS6A01G379600 chr5A 96.373 193 7 0 2107 2299 523613862 523613670 3.740000e-83 318.0
17 TraesCS6A01G379600 chr5A 96.373 193 6 1 2107 2299 595903250 595903441 1.350000e-82 316.0
18 TraesCS6A01G379600 chr6B 93.252 326 15 2 1462 1783 689938382 689938060 7.540000e-130 473.0
19 TraesCS6A01G379600 chr6B 89.437 142 3 2 1862 2003 689938060 689937931 3.990000e-38 169.0
20 TraesCS6A01G379600 chr6D 86.501 363 7 8 1747 2108 454002987 454002666 6.130000e-96 361.0
21 TraesCS6A01G379600 chr6D 93.151 219 7 6 1528 1742 454003390 454003176 4.840000e-82 315.0
22 TraesCS6A01G379600 chr6D 100.000 31 0 0 2303 2333 454002659 454002629 9.000000e-05 58.4
23 TraesCS6A01G379600 chr4B 96.373 193 7 0 2107 2299 137740680 137740488 3.740000e-83 318.0
24 TraesCS6A01G379600 chr1A 96.373 193 7 0 2107 2299 18354258 18354450 3.740000e-83 318.0
25 TraesCS6A01G379600 chr2A 95.855 193 8 0 2107 2299 141240042 141239850 1.740000e-81 313.0
26 TraesCS6A01G379600 chr2A 95.288 191 9 0 2107 2297 613321596 613321786 1.050000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G379600 chr6A 600302414 600304746 2332 True 4309.0 4309 100.000000 1 2333 1 chr6A.!!$R1 2332
1 TraesCS6A01G379600 chr1B 569877940 569879385 1445 False 2597.0 2597 99.101000 1 1445 1 chr1B.!!$F1 1444
2 TraesCS6A01G379600 chr5B 663125709 663127154 1445 False 2543.0 2543 98.411000 1 1446 1 chr5B.!!$F1 1445
3 TraesCS6A01G379600 chr5B 684938284 684939183 899 True 1613.0 1613 99.001000 544 1443 1 chr5B.!!$R1 899
4 TraesCS6A01G379600 chr7A 735511499 735512944 1445 True 2475.0 2475 97.581000 1 1445 1 chr7A.!!$R1 1444
5 TraesCS6A01G379600 chr4D 355874412 355875854 1442 False 2410.0 2410 96.814000 1 1443 1 chr4D.!!$F1 1442
6 TraesCS6A01G379600 chr7B 210328610 210330056 1446 False 2338.0 2338 95.853000 2 1446 1 chr7B.!!$F1 1444
7 TraesCS6A01G379600 chr7B 23955577 23956362 785 True 1360.0 1360 97.964000 663 1445 1 chr7B.!!$R1 782
8 TraesCS6A01G379600 chr3B 788218635 788219612 977 False 1712.0 1712 98.262000 1 978 1 chr3B.!!$F4 977
9 TraesCS6A01G379600 chrUn 48418780 48419689 909 True 1563.0 1563 97.692000 536 1444 1 chrUn.!!$R1 908
10 TraesCS6A01G379600 chr5A 561138146 561139150 1004 False 1535.0 1535 94.240000 193 1198 1 chr5A.!!$F2 1005
11 TraesCS6A01G379600 chr5A 698494141 698494974 833 False 499.0 499 77.672000 5 839 1 chr5A.!!$F4 834
12 TraesCS6A01G379600 chr5A 395764621 395765455 834 False 468.0 468 76.960000 5 839 1 chr5A.!!$F1 834
13 TraesCS6A01G379600 chr6D 454002629 454003390 761 True 244.8 361 93.217333 1528 2333 3 chr6D.!!$R1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 560 0.251916 CACGGGCAAAGGACCTATGA 59.748 55.0 0.0 0.0 41.63 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1452 0.029035 GCATGAGCGAATGCCTTGAG 59.971 55.0 13.8 0.0 45.93 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 1.889573 GCCAGCTCATTACCTCGCC 60.890 63.158 0.00 0.00 0.00 5.54
558 560 0.251916 CACGGGCAAAGGACCTATGA 59.748 55.000 0.00 0.00 41.63 2.15
1434 1439 2.391926 ACAAATCCTTTTTCCCCCGT 57.608 45.000 0.00 0.00 0.00 5.28
1463 1468 4.623814 CCTCAAGGCATTCGCTCA 57.376 55.556 0.00 0.00 38.60 4.26
1464 1469 3.091318 CCTCAAGGCATTCGCTCAT 57.909 52.632 0.00 0.00 38.60 2.90
1465 1470 0.661552 CCTCAAGGCATTCGCTCATG 59.338 55.000 0.00 0.00 38.60 3.07
1476 1481 2.877691 GCTCATGCGACCCAAACC 59.122 61.111 0.00 0.00 0.00 3.27
1477 1482 1.971167 GCTCATGCGACCCAAACCA 60.971 57.895 0.00 0.00 0.00 3.67
1478 1483 1.315257 GCTCATGCGACCCAAACCAT 61.315 55.000 0.00 0.00 0.00 3.55
1479 1484 0.452987 CTCATGCGACCCAAACCATG 59.547 55.000 0.00 0.00 37.11 3.66
1491 1496 2.500229 CAAACCATGGACCAGTAACGT 58.500 47.619 21.47 0.00 0.00 3.99
1492 1497 3.666274 CAAACCATGGACCAGTAACGTA 58.334 45.455 21.47 0.00 0.00 3.57
1493 1498 3.323751 AACCATGGACCAGTAACGTAC 57.676 47.619 21.47 0.00 0.00 3.67
1494 1499 2.532843 ACCATGGACCAGTAACGTACT 58.467 47.619 21.47 0.00 40.28 2.73
1495 1500 3.700538 ACCATGGACCAGTAACGTACTA 58.299 45.455 21.47 0.00 37.23 1.82
1496 1501 4.284178 ACCATGGACCAGTAACGTACTAT 58.716 43.478 21.47 0.00 37.23 2.12
1497 1502 4.098960 ACCATGGACCAGTAACGTACTATG 59.901 45.833 21.47 0.00 37.23 2.23
1498 1503 3.788333 TGGACCAGTAACGTACTATGC 57.212 47.619 0.00 0.00 37.23 3.14
1499 1504 3.090790 TGGACCAGTAACGTACTATGCA 58.909 45.455 0.00 0.00 37.23 3.96
1500 1505 3.702548 TGGACCAGTAACGTACTATGCAT 59.297 43.478 3.79 3.79 37.23 3.96
1501 1506 4.160814 TGGACCAGTAACGTACTATGCATT 59.839 41.667 3.54 0.00 37.23 3.56
1502 1507 5.114081 GGACCAGTAACGTACTATGCATTT 58.886 41.667 3.54 0.00 37.23 2.32
1503 1508 5.233689 GGACCAGTAACGTACTATGCATTTC 59.766 44.000 3.54 0.00 37.23 2.17
1504 1509 5.974108 ACCAGTAACGTACTATGCATTTCT 58.026 37.500 3.54 0.00 37.23 2.52
1505 1510 6.403878 ACCAGTAACGTACTATGCATTTCTT 58.596 36.000 3.54 0.00 37.23 2.52
1506 1511 6.312918 ACCAGTAACGTACTATGCATTTCTTG 59.687 38.462 3.54 0.00 37.23 3.02
1507 1512 6.312918 CCAGTAACGTACTATGCATTTCTTGT 59.687 38.462 3.54 0.00 37.23 3.16
1508 1513 7.490079 CCAGTAACGTACTATGCATTTCTTGTA 59.510 37.037 3.54 0.00 37.23 2.41
1509 1514 9.031360 CAGTAACGTACTATGCATTTCTTGTAT 57.969 33.333 3.54 0.00 37.23 2.29
1510 1515 9.031360 AGTAACGTACTATGCATTTCTTGTATG 57.969 33.333 3.54 8.86 37.23 2.39
1511 1516 6.287107 ACGTACTATGCATTTCTTGTATGC 57.713 37.500 3.54 0.00 46.63 3.14
1517 1522 2.444351 GCATTTCTTGTATGCACGAGC 58.556 47.619 0.00 0.00 45.93 5.03
1543 1548 1.619827 CAAGGAGCCCAGCAAATTCAA 59.380 47.619 0.00 0.00 0.00 2.69
1544 1549 1.260544 AGGAGCCCAGCAAATTCAAC 58.739 50.000 0.00 0.00 0.00 3.18
1545 1550 0.109132 GGAGCCCAGCAAATTCAACG 60.109 55.000 0.00 0.00 0.00 4.10
1546 1551 0.109132 GAGCCCAGCAAATTCAACGG 60.109 55.000 0.00 0.00 0.00 4.44
1547 1552 1.737735 GCCCAGCAAATTCAACGGC 60.738 57.895 0.00 0.00 0.00 5.68
1548 1553 1.966762 CCCAGCAAATTCAACGGCT 59.033 52.632 0.00 0.00 36.99 5.52
1549 1554 0.109132 CCCAGCAAATTCAACGGCTC 60.109 55.000 0.00 0.00 33.60 4.70
1551 1556 1.000385 CCAGCAAATTCAACGGCTCAA 60.000 47.619 0.00 0.00 33.60 3.02
1552 1557 2.353011 CCAGCAAATTCAACGGCTCAAT 60.353 45.455 0.00 0.00 33.60 2.57
1553 1558 2.919229 CAGCAAATTCAACGGCTCAATC 59.081 45.455 0.00 0.00 33.60 2.67
1554 1559 2.821969 AGCAAATTCAACGGCTCAATCT 59.178 40.909 0.00 0.00 28.71 2.40
1555 1560 2.919229 GCAAATTCAACGGCTCAATCTG 59.081 45.455 0.00 0.00 0.00 2.90
1562 1567 2.036571 CGGCTCAATCTGCTGCACA 61.037 57.895 0.00 0.00 0.00 4.57
1584 1589 3.374402 CCGCGTCTGACAGTCCCT 61.374 66.667 4.92 0.00 0.00 4.20
1586 1591 2.433318 GCGTCTGACAGTCCCTGC 60.433 66.667 8.73 0.00 34.37 4.85
1592 1601 2.262915 GACAGTCCCTGCACCGAG 59.737 66.667 0.00 0.00 34.37 4.63
1720 1729 2.601562 GTGGTTGTCTCCACGTGAC 58.398 57.895 19.30 8.13 46.38 3.67
1745 1938 1.001268 GTTCTCACTGAGCGACTGACA 60.001 52.381 0.62 0.00 0.00 3.58
1775 1968 1.505353 CGACTGGGTGTCCTACGTC 59.495 63.158 0.00 0.00 42.49 4.34
1851 2045 1.026718 GTGGAACTCATTGCCCTCCG 61.027 60.000 0.00 0.00 0.00 4.63
1852 2046 2.115291 GGAACTCATTGCCCTCCGC 61.115 63.158 0.00 0.00 38.31 5.54
1853 2047 2.044946 AACTCATTGCCCTCCGCC 60.045 61.111 0.00 0.00 36.24 6.13
1854 2048 3.645268 AACTCATTGCCCTCCGCCC 62.645 63.158 0.00 0.00 36.24 6.13
1855 2049 4.883354 CTCATTGCCCTCCGCCCC 62.883 72.222 0.00 0.00 36.24 5.80
1857 2051 4.883354 CATTGCCCTCCGCCCCTC 62.883 72.222 0.00 0.00 36.24 4.30
1894 2088 3.987404 GCCTCGCCAATGACAACT 58.013 55.556 0.00 0.00 0.00 3.16
1895 2089 1.503542 GCCTCGCCAATGACAACTG 59.496 57.895 0.00 0.00 0.00 3.16
1896 2090 1.926511 GCCTCGCCAATGACAACTGG 61.927 60.000 3.11 3.11 35.67 4.00
1897 2091 0.321564 CCTCGCCAATGACAACTGGA 60.322 55.000 10.41 0.00 34.35 3.86
1898 2092 0.798776 CTCGCCAATGACAACTGGAC 59.201 55.000 10.41 2.52 34.35 4.02
1899 2093 0.948623 TCGCCAATGACAACTGGACG 60.949 55.000 10.41 11.95 34.35 4.79
1900 2094 1.210155 GCCAATGACAACTGGACGC 59.790 57.895 10.41 0.00 34.35 5.19
1901 2095 1.514678 GCCAATGACAACTGGACGCA 61.515 55.000 10.41 0.00 34.35 5.24
1902 2096 0.518636 CCAATGACAACTGGACGCAG 59.481 55.000 1.44 0.00 34.35 5.18
1903 2097 0.518636 CAATGACAACTGGACGCAGG 59.481 55.000 0.00 0.00 0.00 4.85
1904 2098 1.237285 AATGACAACTGGACGCAGGC 61.237 55.000 0.00 0.00 0.00 4.85
1905 2099 3.414700 GACAACTGGACGCAGGCG 61.415 66.667 12.71 12.71 46.03 5.52
1979 2173 0.256464 TTGTGGTGGAAAGAACGGGT 59.744 50.000 0.00 0.00 0.00 5.28
2033 2227 6.696148 CCTCAATAACTTTGTACCTAGCGTAG 59.304 42.308 0.00 0.00 0.00 3.51
2034 2228 7.161773 TCAATAACTTTGTACCTAGCGTAGT 57.838 36.000 0.00 0.00 0.00 2.73
2037 2231 9.178427 CAATAACTTTGTACCTAGCGTAGTATC 57.822 37.037 0.00 0.00 0.00 2.24
2038 2232 6.764308 AACTTTGTACCTAGCGTAGTATCA 57.236 37.500 0.00 0.00 0.00 2.15
2039 2233 6.956202 ACTTTGTACCTAGCGTAGTATCAT 57.044 37.500 0.00 0.00 0.00 2.45
2040 2234 6.736123 ACTTTGTACCTAGCGTAGTATCATG 58.264 40.000 0.00 0.00 0.00 3.07
2041 2235 6.320672 ACTTTGTACCTAGCGTAGTATCATGT 59.679 38.462 0.00 0.00 0.00 3.21
2042 2236 7.500227 ACTTTGTACCTAGCGTAGTATCATGTA 59.500 37.037 0.00 0.00 0.00 2.29
2043 2237 6.791887 TGTACCTAGCGTAGTATCATGTAC 57.208 41.667 0.00 0.00 0.00 2.90
2113 2307 2.910319 TGCAATACACAACCTACTCCCT 59.090 45.455 0.00 0.00 0.00 4.20
2114 2308 3.055385 TGCAATACACAACCTACTCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
2115 2309 3.681874 GCAATACACAACCTACTCCCTCC 60.682 52.174 0.00 0.00 0.00 4.30
2116 2310 1.843368 TACACAACCTACTCCCTCCG 58.157 55.000 0.00 0.00 0.00 4.63
2117 2311 0.178941 ACACAACCTACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
2118 2312 0.531200 CACAACCTACTCCCTCCGTC 59.469 60.000 0.00 0.00 0.00 4.79
2119 2313 0.614134 ACAACCTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
2120 2314 1.379576 AACCTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 0.00 4.79
2121 2315 3.217743 CCTACTCCCTCCGTCCGC 61.218 72.222 0.00 0.00 0.00 5.54
2122 2316 3.584052 CTACTCCCTCCGTCCGCG 61.584 72.222 0.00 0.00 37.95 6.46
2123 2317 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
2124 2318 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
2125 2319 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
2126 2320 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
2127 2321 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
2128 2322 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
2129 2323 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
2130 2324 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
2131 2325 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
2132 2326 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
2133 2327 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
2134 2328 1.202222 CCGTCCGCGAATAAGTGTACT 60.202 52.381 8.23 0.00 41.33 2.73
2135 2329 2.523015 CGTCCGCGAATAAGTGTACTT 58.477 47.619 8.23 2.51 41.33 2.24
2136 2330 2.529090 CGTCCGCGAATAAGTGTACTTC 59.471 50.000 8.23 0.00 41.33 3.01
2137 2331 3.730061 CGTCCGCGAATAAGTGTACTTCT 60.730 47.826 8.23 0.00 41.33 2.85
2138 2332 4.494690 CGTCCGCGAATAAGTGTACTTCTA 60.495 45.833 8.23 0.00 41.33 2.10
2139 2333 4.968788 GTCCGCGAATAAGTGTACTTCTAG 59.031 45.833 8.23 0.00 37.40 2.43
2140 2334 4.036027 TCCGCGAATAAGTGTACTTCTAGG 59.964 45.833 8.23 0.00 37.40 3.02
2141 2335 4.201990 CCGCGAATAAGTGTACTTCTAGGT 60.202 45.833 8.23 0.00 37.40 3.08
2142 2336 5.338365 CGCGAATAAGTGTACTTCTAGGTT 58.662 41.667 0.00 0.00 37.40 3.50
2143 2337 5.803967 CGCGAATAAGTGTACTTCTAGGTTT 59.196 40.000 0.00 0.00 37.40 3.27
2144 2338 6.309737 CGCGAATAAGTGTACTTCTAGGTTTT 59.690 38.462 0.00 0.00 37.40 2.43
2145 2339 7.453838 GCGAATAAGTGTACTTCTAGGTTTTG 58.546 38.462 0.00 0.00 37.40 2.44
2146 2340 7.117379 GCGAATAAGTGTACTTCTAGGTTTTGT 59.883 37.037 0.00 0.00 37.40 2.83
2147 2341 8.645487 CGAATAAGTGTACTTCTAGGTTTTGTC 58.355 37.037 0.00 0.00 37.40 3.18
2148 2342 8.843885 AATAAGTGTACTTCTAGGTTTTGTCC 57.156 34.615 0.00 0.00 37.40 4.02
2149 2343 6.496144 AAGTGTACTTCTAGGTTTTGTCCT 57.504 37.500 0.00 0.00 41.20 3.85
2150 2344 7.607615 AAGTGTACTTCTAGGTTTTGTCCTA 57.392 36.000 0.00 0.00 38.86 2.94
2151 2345 7.607615 AGTGTACTTCTAGGTTTTGTCCTAA 57.392 36.000 0.00 0.00 39.26 2.69
2152 2346 7.668492 AGTGTACTTCTAGGTTTTGTCCTAAG 58.332 38.462 0.00 0.00 39.26 2.18
2153 2347 7.289549 AGTGTACTTCTAGGTTTTGTCCTAAGT 59.710 37.037 0.00 0.00 39.26 2.24
2154 2348 7.598118 GTGTACTTCTAGGTTTTGTCCTAAGTC 59.402 40.741 4.76 0.69 39.26 3.01
2155 2349 6.742559 ACTTCTAGGTTTTGTCCTAAGTCA 57.257 37.500 0.00 0.00 39.26 3.41
2156 2350 7.133133 ACTTCTAGGTTTTGTCCTAAGTCAA 57.867 36.000 0.00 0.00 39.26 3.18
2157 2351 7.571025 ACTTCTAGGTTTTGTCCTAAGTCAAA 58.429 34.615 0.00 0.00 39.26 2.69
2158 2352 7.715686 ACTTCTAGGTTTTGTCCTAAGTCAAAG 59.284 37.037 0.00 0.00 39.26 2.77
2159 2353 7.133133 TCTAGGTTTTGTCCTAAGTCAAAGT 57.867 36.000 0.00 0.00 39.26 2.66
2160 2354 7.571025 TCTAGGTTTTGTCCTAAGTCAAAGTT 58.429 34.615 0.00 0.00 39.26 2.66
2161 2355 8.050930 TCTAGGTTTTGTCCTAAGTCAAAGTTT 58.949 33.333 0.00 0.00 39.26 2.66
2162 2356 7.476540 AGGTTTTGTCCTAAGTCAAAGTTTT 57.523 32.000 0.00 0.00 35.87 2.43
2163 2357 8.584063 AGGTTTTGTCCTAAGTCAAAGTTTTA 57.416 30.769 0.00 0.00 35.87 1.52
2164 2358 9.027202 AGGTTTTGTCCTAAGTCAAAGTTTTAA 57.973 29.630 0.00 0.00 35.87 1.52
2165 2359 9.642327 GGTTTTGTCCTAAGTCAAAGTTTTAAA 57.358 29.630 0.00 0.00 33.54 1.52
2176 2370 9.495572 AAGTCAAAGTTTTAAACATTTGACCAA 57.504 25.926 32.02 16.25 46.39 3.67
2177 2371 8.931775 AGTCAAAGTTTTAAACATTTGACCAAC 58.068 29.630 32.02 21.82 46.39 3.77
2178 2372 8.931775 GTCAAAGTTTTAAACATTTGACCAACT 58.068 29.630 29.41 9.77 43.71 3.16
2254 2448 9.778741 AAGTACATTTCAAAACAGATCTAGTGA 57.221 29.630 0.00 0.00 0.00 3.41
2255 2449 9.950496 AGTACATTTCAAAACAGATCTAGTGAT 57.050 29.630 0.00 0.00 35.26 3.06
2258 2452 9.950496 ACATTTCAAAACAGATCTAGTGATACT 57.050 29.630 0.00 0.00 32.19 2.12
2269 2463 9.632807 CAGATCTAGTGATACTAATTTAGTGCC 57.367 37.037 17.47 10.11 39.81 5.01
2270 2464 9.368416 AGATCTAGTGATACTAATTTAGTGCCA 57.632 33.333 17.47 12.17 39.81 4.92
2277 2471 9.612620 GTGATACTAATTTAGTGCCATAAATGC 57.387 33.333 17.47 1.68 39.81 3.56
2278 2472 9.573166 TGATACTAATTTAGTGCCATAAATGCT 57.427 29.630 17.47 0.00 39.81 3.79
2279 2473 9.831737 GATACTAATTTAGTGCCATAAATGCTG 57.168 33.333 17.47 2.27 39.81 4.41
2280 2474 6.507023 ACTAATTTAGTGCCATAAATGCTGC 58.493 36.000 8.27 0.00 37.69 5.25
2281 2475 5.603170 AATTTAGTGCCATAAATGCTGCT 57.397 34.783 0.00 0.00 35.91 4.24
2282 2476 6.713762 AATTTAGTGCCATAAATGCTGCTA 57.286 33.333 0.00 0.00 35.91 3.49
2283 2477 5.499139 TTTAGTGCCATAAATGCTGCTAC 57.501 39.130 0.00 0.00 0.00 3.58
2284 2478 3.287867 AGTGCCATAAATGCTGCTACT 57.712 42.857 0.00 0.00 0.00 2.57
2285 2479 3.624777 AGTGCCATAAATGCTGCTACTT 58.375 40.909 0.00 0.00 0.00 2.24
2286 2480 4.019174 AGTGCCATAAATGCTGCTACTTT 58.981 39.130 0.00 1.23 0.00 2.66
2287 2481 4.463891 AGTGCCATAAATGCTGCTACTTTT 59.536 37.500 0.00 0.00 0.00 2.27
2288 2482 4.800471 GTGCCATAAATGCTGCTACTTTTC 59.200 41.667 0.00 0.00 0.00 2.29
2289 2483 4.142182 TGCCATAAATGCTGCTACTTTTCC 60.142 41.667 0.00 0.00 0.00 3.13
2290 2484 4.737649 GCCATAAATGCTGCTACTTTTCCC 60.738 45.833 0.00 0.00 0.00 3.97
2291 2485 4.646492 CCATAAATGCTGCTACTTTTCCCT 59.354 41.667 0.00 0.00 0.00 4.20
2292 2486 5.827797 CCATAAATGCTGCTACTTTTCCCTA 59.172 40.000 0.00 0.00 0.00 3.53
2293 2487 6.491403 CCATAAATGCTGCTACTTTTCCCTAT 59.509 38.462 0.00 0.00 0.00 2.57
2294 2488 7.665559 CCATAAATGCTGCTACTTTTCCCTATA 59.334 37.037 0.00 0.00 0.00 1.31
2295 2489 9.066892 CATAAATGCTGCTACTTTTCCCTATAA 57.933 33.333 0.00 0.00 0.00 0.98
2296 2490 7.954666 AAATGCTGCTACTTTTCCCTATAAA 57.045 32.000 0.00 0.00 0.00 1.40
2297 2491 7.573968 AATGCTGCTACTTTTCCCTATAAAG 57.426 36.000 0.00 0.00 38.32 1.85
2298 2492 6.062258 TGCTGCTACTTTTCCCTATAAAGT 57.938 37.500 0.00 0.00 45.19 2.66
2299 2493 7.190335 TGCTGCTACTTTTCCCTATAAAGTA 57.810 36.000 0.00 0.00 42.39 2.24
2300 2494 7.802117 TGCTGCTACTTTTCCCTATAAAGTAT 58.198 34.615 0.00 0.00 43.38 2.12
2301 2495 8.930527 TGCTGCTACTTTTCCCTATAAAGTATA 58.069 33.333 0.00 2.35 43.38 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.587923 CAAATGCGAATTTGTGTCCCAT 58.412 40.909 19.16 0.00 36.91 4.00
89 90 0.240145 TCGAAGTCTACACGTGCCTG 59.760 55.000 17.22 6.07 0.00 4.85
350 351 1.227380 GTCTTCCAGATGGCGCGAT 60.227 57.895 12.10 3.93 34.44 4.58
1190 1194 5.236282 CAGCATCCTTAGATCGATCAACAT 58.764 41.667 26.47 9.04 0.00 2.71
1446 1451 0.661552 CATGAGCGAATGCCTTGAGG 59.338 55.000 0.00 0.00 44.31 3.86
1447 1452 0.029035 GCATGAGCGAATGCCTTGAG 59.971 55.000 13.80 0.00 45.93 3.02
1448 1453 2.100846 GCATGAGCGAATGCCTTGA 58.899 52.632 13.80 0.00 45.93 3.02
1449 1454 4.704007 GCATGAGCGAATGCCTTG 57.296 55.556 13.80 0.00 45.93 3.61
1459 1464 1.315257 ATGGTTTGGGTCGCATGAGC 61.315 55.000 0.00 0.00 41.93 4.26
1460 1465 0.452987 CATGGTTTGGGTCGCATGAG 59.547 55.000 0.00 0.00 0.00 2.90
1461 1466 0.964860 CCATGGTTTGGGTCGCATGA 60.965 55.000 2.57 0.00 42.33 3.07
1462 1467 0.964860 TCCATGGTTTGGGTCGCATG 60.965 55.000 12.58 0.00 46.45 4.06
1463 1468 0.965363 GTCCATGGTTTGGGTCGCAT 60.965 55.000 12.58 0.00 46.45 4.73
1464 1469 1.602323 GTCCATGGTTTGGGTCGCA 60.602 57.895 12.58 0.00 46.45 5.10
1465 1470 2.340328 GGTCCATGGTTTGGGTCGC 61.340 63.158 12.58 0.00 46.45 5.19
1466 1471 0.960364 CTGGTCCATGGTTTGGGTCG 60.960 60.000 12.58 0.00 46.45 4.79
1467 1472 0.112412 ACTGGTCCATGGTTTGGGTC 59.888 55.000 12.58 0.00 46.45 4.46
1468 1473 1.451449 TACTGGTCCATGGTTTGGGT 58.549 50.000 12.58 8.27 46.45 4.51
1469 1474 2.167662 GTTACTGGTCCATGGTTTGGG 58.832 52.381 12.58 2.52 46.45 4.12
1470 1475 7.764811 AGTACGTTACTGGTCCATGGTTTGG 62.765 48.000 12.58 3.95 41.51 3.28
1471 1476 2.500229 ACGTTACTGGTCCATGGTTTG 58.500 47.619 12.58 3.58 0.00 2.93
1472 1477 2.943036 ACGTTACTGGTCCATGGTTT 57.057 45.000 12.58 0.00 0.00 3.27
1473 1478 2.901839 AGTACGTTACTGGTCCATGGTT 59.098 45.455 12.58 0.00 37.69 3.67
1474 1479 2.532843 AGTACGTTACTGGTCCATGGT 58.467 47.619 12.58 0.00 37.69 3.55
1475 1480 4.617959 CATAGTACGTTACTGGTCCATGG 58.382 47.826 4.97 4.97 39.81 3.66
1476 1481 4.049186 GCATAGTACGTTACTGGTCCATG 58.951 47.826 0.00 0.00 39.81 3.66
1477 1482 3.702548 TGCATAGTACGTTACTGGTCCAT 59.297 43.478 0.00 0.00 39.81 3.41
1478 1483 3.090790 TGCATAGTACGTTACTGGTCCA 58.909 45.455 0.00 0.00 39.81 4.02
1479 1484 3.788333 TGCATAGTACGTTACTGGTCC 57.212 47.619 0.00 0.00 39.81 4.46
1480 1485 6.040878 AGAAATGCATAGTACGTTACTGGTC 58.959 40.000 0.00 0.00 39.81 4.02
1481 1486 5.974108 AGAAATGCATAGTACGTTACTGGT 58.026 37.500 0.00 0.00 39.81 4.00
1482 1487 6.312918 ACAAGAAATGCATAGTACGTTACTGG 59.687 38.462 0.00 0.00 39.81 4.00
1483 1488 7.290857 ACAAGAAATGCATAGTACGTTACTG 57.709 36.000 0.00 0.00 39.81 2.74
1484 1489 9.031360 CATACAAGAAATGCATAGTACGTTACT 57.969 33.333 0.00 0.00 42.68 2.24
1498 1503 3.745332 TGCTCGTGCATACAAGAAATG 57.255 42.857 8.30 0.00 45.31 2.32
1513 1518 2.811317 GCTCCTTGGACGTGCTCG 60.811 66.667 8.99 6.63 43.34 5.03
1514 1519 2.435059 GGCTCCTTGGACGTGCTC 60.435 66.667 8.99 0.00 0.00 4.26
1515 1520 4.021925 GGGCTCCTTGGACGTGCT 62.022 66.667 8.99 0.00 0.00 4.40
1516 1521 4.329545 TGGGCTCCTTGGACGTGC 62.330 66.667 0.00 0.00 0.00 5.34
1517 1522 2.046892 CTGGGCTCCTTGGACGTG 60.047 66.667 0.00 0.00 0.00 4.49
1518 1523 4.021925 GCTGGGCTCCTTGGACGT 62.022 66.667 0.00 0.00 0.00 4.34
1519 1524 3.551496 TTGCTGGGCTCCTTGGACG 62.551 63.158 0.00 0.00 0.00 4.79
1520 1525 0.613012 ATTTGCTGGGCTCCTTGGAC 60.613 55.000 0.00 0.00 0.00 4.02
1521 1526 0.114954 AATTTGCTGGGCTCCTTGGA 59.885 50.000 0.00 0.00 0.00 3.53
1522 1527 0.533951 GAATTTGCTGGGCTCCTTGG 59.466 55.000 0.00 0.00 0.00 3.61
1523 1528 1.259609 TGAATTTGCTGGGCTCCTTG 58.740 50.000 0.00 0.00 0.00 3.61
1524 1529 1.620323 GTTGAATTTGCTGGGCTCCTT 59.380 47.619 0.00 0.00 0.00 3.36
1525 1530 1.260544 GTTGAATTTGCTGGGCTCCT 58.739 50.000 0.00 0.00 0.00 3.69
1526 1531 0.109132 CGTTGAATTTGCTGGGCTCC 60.109 55.000 0.00 0.00 0.00 4.70
1543 1548 2.037136 GTGCAGCAGATTGAGCCGT 61.037 57.895 0.00 0.00 0.00 5.68
1544 1549 1.579964 TTGTGCAGCAGATTGAGCCG 61.580 55.000 0.00 0.00 0.00 5.52
1545 1550 0.109412 GTTGTGCAGCAGATTGAGCC 60.109 55.000 0.00 0.00 0.00 4.70
1546 1551 0.109412 GGTTGTGCAGCAGATTGAGC 60.109 55.000 0.00 0.00 0.00 4.26
1547 1552 1.068748 GTGGTTGTGCAGCAGATTGAG 60.069 52.381 0.00 0.00 31.97 3.02
1548 1553 0.953727 GTGGTTGTGCAGCAGATTGA 59.046 50.000 0.00 0.00 31.97 2.57
1549 1554 0.038892 GGTGGTTGTGCAGCAGATTG 60.039 55.000 0.00 0.00 31.97 2.67
1551 1556 1.968017 CGGTGGTTGTGCAGCAGAT 60.968 57.895 0.00 0.00 31.97 2.90
1552 1557 2.591429 CGGTGGTTGTGCAGCAGA 60.591 61.111 0.00 0.00 31.97 4.26
1553 1558 4.332637 GCGGTGGTTGTGCAGCAG 62.333 66.667 0.00 0.00 31.97 4.24
1562 1567 2.029073 CTGTCAGACGCGGTGGTT 59.971 61.111 12.47 0.00 0.00 3.67
1584 1589 1.409064 GATCAGTATGGACTCGGTGCA 59.591 52.381 1.17 1.17 38.41 4.57
1586 1591 1.600663 GCGATCAGTATGGACTCGGTG 60.601 57.143 0.00 0.00 34.90 4.94
1592 1601 1.068885 CCGAGAGCGATCAGTATGGAC 60.069 57.143 2.38 0.00 40.82 4.02
1639 1648 3.596214 TCAGTAGCGAGGTTGATTTTCC 58.404 45.455 0.00 0.00 0.00 3.13
1641 1650 5.091261 AGATCAGTAGCGAGGTTGATTTT 57.909 39.130 0.00 0.00 30.85 1.82
1720 1729 0.238553 TCGCTCAGTGAGAACGTGAG 59.761 55.000 24.55 5.38 40.66 3.51
1758 1951 1.602327 GGGACGTAGGACACCCAGTC 61.602 65.000 2.95 0.00 46.83 3.51
1761 1954 0.632835 ATAGGGACGTAGGACACCCA 59.367 55.000 10.14 0.00 44.25 4.51
1775 1968 0.532862 CTAGGTTGCGTGGCATAGGG 60.533 60.000 0.00 0.00 38.76 3.53
1852 2046 4.465446 TCGCAGGAGAGGGAGGGG 62.465 72.222 0.00 0.00 0.00 4.79
1853 2047 2.837291 CTCGCAGGAGAGGGAGGG 60.837 72.222 0.00 0.00 43.27 4.30
1856 2050 0.680280 GTGTACTCGCAGGAGAGGGA 60.680 60.000 5.07 0.00 43.27 4.20
1857 2051 1.810532 GTGTACTCGCAGGAGAGGG 59.189 63.158 5.07 0.00 43.27 4.30
1858 2052 1.429825 CGTGTACTCGCAGGAGAGG 59.570 63.158 4.19 0.00 43.27 3.69
1859 2053 1.429825 CCGTGTACTCGCAGGAGAG 59.570 63.158 11.71 0.00 43.27 3.20
1860 2054 2.697761 GCCGTGTACTCGCAGGAGA 61.698 63.158 11.71 0.00 43.27 3.71
1887 2081 2.280797 GCCTGCGTCCAGTTGTCA 60.281 61.111 0.00 0.00 37.38 3.58
1888 2082 3.414700 CGCCTGCGTCCAGTTGTC 61.415 66.667 2.83 0.00 37.38 3.18
1949 2143 4.740822 ACCACAAGCATCCCGGCC 62.741 66.667 0.00 0.00 0.00 6.13
1950 2144 3.443045 CACCACAAGCATCCCGGC 61.443 66.667 0.00 0.00 0.00 6.13
1951 2145 2.751436 CCACCACAAGCATCCCGG 60.751 66.667 0.00 0.00 0.00 5.73
1952 2146 0.893270 TTTCCACCACAAGCATCCCG 60.893 55.000 0.00 0.00 0.00 5.14
1979 2173 2.565391 TGGGTCTTCTCATTAACTGCGA 59.435 45.455 0.00 0.00 0.00 5.10
2013 2207 8.455903 TGATACTACGCTAGGTACAAAGTTAT 57.544 34.615 0.00 0.00 0.00 1.89
2037 2231 7.514805 TGCAACTTTGAAACGTATAGTACATG 58.485 34.615 0.00 0.00 0.00 3.21
2038 2232 7.661127 TGCAACTTTGAAACGTATAGTACAT 57.339 32.000 0.00 0.00 0.00 2.29
2039 2233 7.661127 ATGCAACTTTGAAACGTATAGTACA 57.339 32.000 0.00 0.00 0.00 2.90
2040 2234 8.225107 TGAATGCAACTTTGAAACGTATAGTAC 58.775 33.333 0.00 0.00 0.00 2.73
2041 2235 8.312896 TGAATGCAACTTTGAAACGTATAGTA 57.687 30.769 0.00 0.00 0.00 1.82
2042 2236 7.197071 TGAATGCAACTTTGAAACGTATAGT 57.803 32.000 0.00 0.00 0.00 2.12
2043 2237 8.096400 CATGAATGCAACTTTGAAACGTATAG 57.904 34.615 0.00 0.00 0.00 1.31
2073 2267 2.035832 GCACGGGGGAATCCATTAAATG 59.964 50.000 0.09 0.00 37.22 2.32
2108 2302 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
2109 2303 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
2110 2304 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
2111 2305 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
2113 2307 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
2114 2308 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
2115 2309 2.184385 AGTACACTTATTCGCGGACG 57.816 50.000 6.13 0.00 42.01 4.79
2116 2310 3.767278 AGAAGTACACTTATTCGCGGAC 58.233 45.455 6.13 0.00 36.11 4.79
2117 2311 4.036027 CCTAGAAGTACACTTATTCGCGGA 59.964 45.833 6.13 0.00 36.11 5.54
2118 2312 4.201990 ACCTAGAAGTACACTTATTCGCGG 60.202 45.833 6.13 0.00 36.11 6.46
2119 2313 4.918037 ACCTAGAAGTACACTTATTCGCG 58.082 43.478 0.00 0.00 36.11 5.87
2120 2314 7.117379 ACAAAACCTAGAAGTACACTTATTCGC 59.883 37.037 0.00 0.00 36.11 4.70
2121 2315 8.530269 ACAAAACCTAGAAGTACACTTATTCG 57.470 34.615 0.00 0.00 36.11 3.34
2122 2316 8.933807 GGACAAAACCTAGAAGTACACTTATTC 58.066 37.037 0.00 0.00 36.11 1.75
2123 2317 8.657712 AGGACAAAACCTAGAAGTACACTTATT 58.342 33.333 0.00 0.00 38.65 1.40
2124 2318 8.203681 AGGACAAAACCTAGAAGTACACTTAT 57.796 34.615 0.00 0.00 38.65 1.73
2125 2319 7.607615 AGGACAAAACCTAGAAGTACACTTA 57.392 36.000 0.00 0.00 38.65 2.24
2126 2320 6.496144 AGGACAAAACCTAGAAGTACACTT 57.504 37.500 0.00 0.00 38.65 3.16
2127 2321 7.289549 ACTTAGGACAAAACCTAGAAGTACACT 59.710 37.037 0.00 0.00 42.47 3.55
2128 2322 7.440198 ACTTAGGACAAAACCTAGAAGTACAC 58.560 38.462 0.00 0.00 42.47 2.90
2129 2323 7.288389 TGACTTAGGACAAAACCTAGAAGTACA 59.712 37.037 0.00 0.00 42.47 2.90
2130 2324 7.664758 TGACTTAGGACAAAACCTAGAAGTAC 58.335 38.462 0.00 0.00 42.47 2.73
2131 2325 7.844493 TGACTTAGGACAAAACCTAGAAGTA 57.156 36.000 0.00 0.00 42.47 2.24
2132 2326 6.742559 TGACTTAGGACAAAACCTAGAAGT 57.257 37.500 0.00 0.00 42.47 3.01
2133 2327 7.715686 ACTTTGACTTAGGACAAAACCTAGAAG 59.284 37.037 4.30 0.00 42.47 2.85
2134 2328 7.571025 ACTTTGACTTAGGACAAAACCTAGAA 58.429 34.615 4.30 0.00 42.47 2.10
2135 2329 7.133133 ACTTTGACTTAGGACAAAACCTAGA 57.867 36.000 4.30 0.00 42.47 2.43
2136 2330 7.803279 AACTTTGACTTAGGACAAAACCTAG 57.197 36.000 4.30 0.00 42.47 3.02
2137 2331 8.584063 AAAACTTTGACTTAGGACAAAACCTA 57.416 30.769 4.30 0.00 41.00 3.08
2138 2332 7.476540 AAAACTTTGACTTAGGACAAAACCT 57.523 32.000 4.30 0.00 43.32 3.50
2139 2333 9.642327 TTTAAAACTTTGACTTAGGACAAAACC 57.358 29.630 4.30 0.00 36.87 3.27
2150 2344 9.495572 TTGGTCAAATGTTTAAAACTTTGACTT 57.504 25.926 31.15 5.70 45.66 3.01
2151 2345 8.931775 GTTGGTCAAATGTTTAAAACTTTGACT 58.068 29.630 31.15 3.52 45.66 3.41
2152 2346 8.931775 AGTTGGTCAAATGTTTAAAACTTTGAC 58.068 29.630 28.34 28.34 45.65 3.18
2228 2422 9.778741 TCACTAGATCTGTTTTGAAATGTACTT 57.221 29.630 5.18 0.00 0.00 2.24
2229 2423 9.950496 ATCACTAGATCTGTTTTGAAATGTACT 57.050 29.630 5.18 0.00 0.00 2.73
2232 2426 9.950496 AGTATCACTAGATCTGTTTTGAAATGT 57.050 29.630 5.18 0.00 35.67 2.71
2243 2437 9.632807 GGCACTAAATTAGTATCACTAGATCTG 57.367 37.037 5.18 0.00 37.23 2.90
2244 2438 9.368416 TGGCACTAAATTAGTATCACTAGATCT 57.632 33.333 5.23 0.00 37.23 2.75
2251 2445 9.612620 GCATTTATGGCACTAAATTAGTATCAC 57.387 33.333 5.23 0.00 37.23 3.06
2252 2446 9.573166 AGCATTTATGGCACTAAATTAGTATCA 57.427 29.630 5.23 7.55 37.23 2.15
2253 2447 9.831737 CAGCATTTATGGCACTAAATTAGTATC 57.168 33.333 5.23 2.20 37.23 2.24
2254 2448 8.299570 GCAGCATTTATGGCACTAAATTAGTAT 58.700 33.333 5.23 0.00 37.23 2.12
2255 2449 7.502226 AGCAGCATTTATGGCACTAAATTAGTA 59.498 33.333 5.23 0.00 37.23 1.82
2256 2450 6.322201 AGCAGCATTTATGGCACTAAATTAGT 59.678 34.615 0.00 0.00 40.28 2.24
2257 2451 6.742109 AGCAGCATTTATGGCACTAAATTAG 58.258 36.000 0.00 0.00 30.68 1.73
2258 2452 6.713762 AGCAGCATTTATGGCACTAAATTA 57.286 33.333 0.00 0.00 30.68 1.40
2259 2453 5.603170 AGCAGCATTTATGGCACTAAATT 57.397 34.783 0.00 0.00 30.68 1.82
2260 2454 5.829924 AGTAGCAGCATTTATGGCACTAAAT 59.170 36.000 0.00 0.00 32.76 1.40
2261 2455 5.192927 AGTAGCAGCATTTATGGCACTAAA 58.807 37.500 0.00 0.00 0.00 1.85
2262 2456 4.780815 AGTAGCAGCATTTATGGCACTAA 58.219 39.130 0.00 0.00 0.00 2.24
2263 2457 4.422073 AGTAGCAGCATTTATGGCACTA 57.578 40.909 0.00 0.00 0.00 2.74
2264 2458 3.287867 AGTAGCAGCATTTATGGCACT 57.712 42.857 0.00 0.00 0.00 4.40
2265 2459 4.376340 AAAGTAGCAGCATTTATGGCAC 57.624 40.909 0.00 0.00 0.00 5.01
2266 2460 4.142182 GGAAAAGTAGCAGCATTTATGGCA 60.142 41.667 0.00 0.00 0.00 4.92
2267 2461 4.363138 GGAAAAGTAGCAGCATTTATGGC 58.637 43.478 0.00 0.00 0.00 4.40
2268 2462 4.646492 AGGGAAAAGTAGCAGCATTTATGG 59.354 41.667 0.00 0.00 0.00 2.74
2269 2463 5.841957 AGGGAAAAGTAGCAGCATTTATG 57.158 39.130 0.00 0.00 0.00 1.90
2270 2464 9.640952 TTTATAGGGAAAAGTAGCAGCATTTAT 57.359 29.630 0.00 0.00 0.00 1.40
2271 2465 9.120538 CTTTATAGGGAAAAGTAGCAGCATTTA 57.879 33.333 0.00 0.00 0.00 1.40
2272 2466 7.615757 ACTTTATAGGGAAAAGTAGCAGCATTT 59.384 33.333 0.00 0.00 43.54 2.32
2273 2467 7.119387 ACTTTATAGGGAAAAGTAGCAGCATT 58.881 34.615 0.00 0.00 43.54 3.56
2274 2468 6.663734 ACTTTATAGGGAAAAGTAGCAGCAT 58.336 36.000 0.00 0.00 43.54 3.79
2275 2469 6.062258 ACTTTATAGGGAAAAGTAGCAGCA 57.938 37.500 0.00 0.00 43.54 4.41
2276 2470 9.945904 ATATACTTTATAGGGAAAAGTAGCAGC 57.054 33.333 12.39 0.00 46.81 5.25
2286 2480 8.272173 GCCAAGGCATATATACTTTATAGGGAA 58.728 37.037 6.14 0.00 41.49 3.97
2287 2481 7.627697 AGCCAAGGCATATATACTTTATAGGGA 59.372 37.037 14.40 0.00 44.88 4.20
2288 2482 7.806180 AGCCAAGGCATATATACTTTATAGGG 58.194 38.462 14.40 0.95 44.88 3.53
2289 2483 8.709308 AGAGCCAAGGCATATATACTTTATAGG 58.291 37.037 14.40 1.22 44.88 2.57
2290 2484 9.757227 GAGAGCCAAGGCATATATACTTTATAG 57.243 37.037 14.40 0.00 44.88 1.31
2291 2485 8.705594 GGAGAGCCAAGGCATATATACTTTATA 58.294 37.037 14.40 0.00 44.88 0.98
2292 2486 7.182749 TGGAGAGCCAAGGCATATATACTTTAT 59.817 37.037 14.40 0.00 42.49 1.40
2293 2487 6.500400 TGGAGAGCCAAGGCATATATACTTTA 59.500 38.462 14.40 0.00 42.49 1.85
2294 2488 5.310594 TGGAGAGCCAAGGCATATATACTTT 59.689 40.000 14.40 0.00 42.49 2.66
2295 2489 4.846367 TGGAGAGCCAAGGCATATATACTT 59.154 41.667 14.40 0.00 42.49 2.24
2296 2490 4.429505 TGGAGAGCCAAGGCATATATACT 58.570 43.478 14.40 1.02 42.49 2.12
2297 2491 4.826274 TGGAGAGCCAAGGCATATATAC 57.174 45.455 14.40 0.00 42.49 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.