Multiple sequence alignment - TraesCS6A01G379300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G379300 chr6A 100.000 7412 0 0 1 7412 600134679 600127268 0.000000e+00 13688.0
1 TraesCS6A01G379300 chr6A 99.353 7423 33 8 1 7412 600253266 600260684 0.000000e+00 13428.0
2 TraesCS6A01G379300 chr6A 98.524 271 4 0 4803 5073 544677602 544677872 5.200000e-131 479.0
3 TraesCS6A01G379300 chr6A 96.727 275 9 0 4799 5073 444277363 444277637 6.780000e-125 459.0
4 TraesCS6A01G379300 chr6A 91.156 294 22 4 4805 5095 11131364 11131656 5.390000e-106 396.0
5 TraesCS6A01G379300 chr6A 94.161 137 7 1 6657 6792 600276535 600276399 2.710000e-49 207.0
6 TraesCS6A01G379300 chr6A 81.548 168 31 0 4627 4794 97928238 97928405 1.000000e-28 139.0
7 TraesCS6A01G379300 chr6A 100.000 44 0 0 3022 3065 459426465 459426422 1.710000e-11 82.4
8 TraesCS6A01G379300 chr6B 89.634 955 71 18 1211 2156 689528087 689527152 0.000000e+00 1190.0
9 TraesCS6A01G379300 chr6B 92.857 742 46 7 5892 6630 689522845 689522108 0.000000e+00 1070.0
10 TraesCS6A01G379300 chr6B 90.070 856 35 18 311 1129 689529416 689528574 0.000000e+00 1064.0
11 TraesCS6A01G379300 chr6B 94.833 658 33 1 2152 2809 689525311 689524655 0.000000e+00 1026.0
12 TraesCS6A01G379300 chr6B 94.508 528 27 2 5371 5896 689523402 689522875 0.000000e+00 813.0
13 TraesCS6A01G379300 chr6B 92.419 554 27 3 3707 4260 689524092 689523554 0.000000e+00 776.0
14 TraesCS6A01G379300 chr6B 93.256 430 23 4 3317 3740 689524518 689524089 4.880000e-176 628.0
15 TraesCS6A01G379300 chr6B 90.813 283 15 2 10 282 689529949 689529668 1.170000e-97 368.0
16 TraesCS6A01G379300 chr6B 93.488 215 14 0 5113 5327 419835571 419835785 3.340000e-83 320.0
17 TraesCS6A01G379300 chr6B 95.395 152 6 1 6642 6792 689920382 689920231 2.670000e-59 241.0
18 TraesCS6A01G379300 chr6B 83.824 204 22 9 6864 7058 30128087 30128288 4.570000e-42 183.0
19 TraesCS6A01G379300 chr6B 79.545 220 32 10 6882 7095 659585905 659585693 2.160000e-30 145.0
20 TraesCS6A01G379300 chr6B 94.444 54 1 1 268 321 689529490 689529439 1.710000e-11 82.4
21 TraesCS6A01G379300 chr6B 97.917 48 0 1 3015 3062 717861231 717861185 1.710000e-11 82.4
22 TraesCS6A01G379300 chr6B 96.000 50 1 1 3016 3065 9973584 9973632 6.160000e-11 80.5
23 TraesCS6A01G379300 chr6B 95.918 49 2 0 3017 3065 123836803 123836851 6.160000e-11 80.5
24 TraesCS6A01G379300 chr6B 94.231 52 2 1 5326 5376 358999318 358999369 2.220000e-10 78.7
25 TraesCS6A01G379300 chr6B 89.655 58 4 2 3009 3065 66932235 66932291 1.030000e-08 73.1
26 TraesCS6A01G379300 chr6B 100.000 28 0 0 6812 6839 366739526 366739499 1.300000e-02 52.8
27 TraesCS6A01G379300 chr5D 84.640 625 80 13 6799 7412 467846329 467846948 6.360000e-170 608.0
28 TraesCS6A01G379300 chr5D 80.982 163 19 9 6857 7009 514293919 514293759 1.310000e-22 119.0
29 TraesCS6A01G379300 chr5D 84.058 69 7 4 6880 6945 514293969 514293902 6.210000e-06 63.9
30 TraesCS6A01G379300 chr2D 83.926 647 78 15 6783 7412 620315448 620316085 4.950000e-166 595.0
31 TraesCS6A01G379300 chr2D 84.848 231 28 5 5074 5297 6194838 6195068 7.480000e-55 226.0
32 TraesCS6A01G379300 chr2D 88.596 114 13 0 7292 7405 631180243 631180130 1.000000e-28 139.0
33 TraesCS6A01G379300 chr2D 91.803 61 3 2 5327 5386 597768592 597768651 4.770000e-12 84.2
34 TraesCS6A01G379300 chr4A 87.919 447 49 1 4627 5073 43264809 43264368 8.520000e-144 521.0
35 TraesCS6A01G379300 chr4A 94.884 215 11 0 5113 5327 135320033 135320247 3.310000e-88 337.0
36 TraesCS6A01G379300 chr4A 93.488 215 14 0 5113 5327 503419211 503419425 3.340000e-83 320.0
37 TraesCS6A01G379300 chr4A 80.186 429 60 16 4479 4887 576604222 576603799 1.560000e-76 298.0
38 TraesCS6A01G379300 chr7A 81.629 626 102 10 6799 7412 686929514 686928890 2.390000e-139 507.0
39 TraesCS6A01G379300 chr7A 97.786 271 6 0 4803 5073 439154577 439154307 1.130000e-127 468.0
40 TraesCS6A01G379300 chr7A 86.061 330 33 7 4457 4776 691523905 691523579 7.120000e-90 342.0
41 TraesCS6A01G379300 chr7A 93.981 216 13 0 5112 5327 556585861 556585646 1.990000e-85 327.0
42 TraesCS6A01G379300 chr1A 96.727 275 9 0 4799 5073 309615747 309615473 6.780000e-125 459.0
43 TraesCS6A01G379300 chr1A 88.319 351 30 4 4454 4794 256514779 256515128 1.920000e-110 411.0
44 TraesCS6A01G379300 chr1A 86.040 351 30 10 4457 4794 442452338 442451994 7.070000e-95 359.0
45 TraesCS6A01G379300 chr1A 92.411 224 15 1 5106 5327 84110222 84109999 1.200000e-82 318.0
46 TraesCS6A01G379300 chr1A 100.000 47 0 0 5329 5375 488023702 488023656 3.680000e-13 87.9
47 TraesCS6A01G379300 chr1A 100.000 41 0 0 5075 5115 359242456 359242496 7.970000e-10 76.8
48 TraesCS6A01G379300 chr1A 100.000 41 0 0 5075 5115 460283303 460283343 7.970000e-10 76.8
49 TraesCS6A01G379300 chr2A 97.048 271 8 0 4803 5073 72756323 72756053 2.440000e-124 457.0
50 TraesCS6A01G379300 chr2A 96.727 275 8 1 4800 5073 733094928 733094654 2.440000e-124 457.0
51 TraesCS6A01G379300 chr2A 82.906 234 27 11 6857 7079 618114330 618114099 1.630000e-46 198.0
52 TraesCS6A01G379300 chr2A 80.606 165 29 2 4631 4794 375120927 375121089 2.810000e-24 124.0
53 TraesCS6A01G379300 chr6D 93.023 301 19 2 4770 5068 166951798 166952098 8.830000e-119 438.0
54 TraesCS6A01G379300 chr6D 92.701 137 7 3 6658 6792 453955157 453955022 2.110000e-45 195.0
55 TraesCS6A01G379300 chr6D 81.818 110 16 3 6840 6945 25448243 25448352 1.020000e-13 89.8
56 TraesCS6A01G379300 chr6D 94.231 52 1 2 5322 5373 9574541 9574590 2.220000e-10 78.7
57 TraesCS6A01G379300 chr6D 97.778 45 1 0 3022 3066 156047569 156047525 2.220000e-10 78.7
58 TraesCS6A01G379300 chr6D 100.000 28 0 0 6812 6839 240026038 240026011 1.300000e-02 52.8
59 TraesCS6A01G379300 chr5B 90.127 314 28 3 4803 5115 429894407 429894718 8.950000e-109 405.0
60 TraesCS6A01G379300 chr5B 81.857 463 57 16 6783 7239 19555167 19555608 1.520000e-96 364.0
61 TraesCS6A01G379300 chr5B 93.396 212 14 0 5116 5327 101271057 101270846 1.550000e-81 315.0
62 TraesCS6A01G379300 chr5B 93.396 212 14 0 5116 5327 258768981 258768770 1.550000e-81 315.0
63 TraesCS6A01G379300 chr5B 91.525 59 5 0 3157 3215 266319695 266319753 1.710000e-11 82.4
64 TraesCS6A01G379300 chr5B 91.525 59 5 0 3157 3215 266338440 266338498 1.710000e-11 82.4
65 TraesCS6A01G379300 chr5B 100.000 41 0 0 5075 5115 402744007 402744047 7.970000e-10 76.8
66 TraesCS6A01G379300 chr7D 86.930 329 33 3 4458 4776 599400237 599399909 1.970000e-95 361.0
67 TraesCS6A01G379300 chr7D 85.507 69 7 3 6879 6945 579330153 579330086 1.330000e-07 69.4
68 TraesCS6A01G379300 chr3D 94.286 210 12 0 5116 5325 192259419 192259210 9.280000e-84 322.0
69 TraesCS6A01G379300 chr3D 84.337 166 23 3 2831 2995 611199664 611199827 7.700000e-35 159.0
70 TraesCS6A01G379300 chr3D 81.026 195 30 6 6864 7053 395656498 395656690 1.670000e-31 148.0
71 TraesCS6A01G379300 chr3D 83.168 101 16 1 74 173 58097407 58097507 2.850000e-14 91.6
72 TraesCS6A01G379300 chr3D 94.545 55 2 1 5331 5385 56848970 56848917 4.770000e-12 84.2
73 TraesCS6A01G379300 chr7B 85.015 327 33 12 4463 4776 678849164 678849487 1.200000e-82 318.0
74 TraesCS6A01G379300 chr7B 78.750 240 39 10 6864 7093 674079187 674078950 4.630000e-32 150.0
75 TraesCS6A01G379300 chr7B 86.792 106 12 2 69 173 627729644 627729540 4.700000e-22 117.0
76 TraesCS6A01G379300 chr7B 95.918 49 1 1 3017 3065 652980507 652980460 2.220000e-10 78.7
77 TraesCS6A01G379300 chr7B 84.416 77 12 0 69 145 438938134 438938210 7.970000e-10 76.8
78 TraesCS6A01G379300 chr7B 100.000 41 0 0 5074 5114 565918771 565918811 7.970000e-10 76.8
79 TraesCS6A01G379300 chr4B 93.023 215 15 0 5113 5327 438845133 438845347 1.550000e-81 315.0
80 TraesCS6A01G379300 chr4B 97.959 49 1 0 3017 3065 286079578 286079530 1.330000e-12 86.1
81 TraesCS6A01G379300 chr4B 97.826 46 0 1 3021 3066 10507534 10507490 2.220000e-10 78.7
82 TraesCS6A01G379300 chr4B 94.118 51 2 1 3015 3065 631442104 631442153 7.970000e-10 76.8
83 TraesCS6A01G379300 chr4B 97.368 38 1 0 3178 3215 201649381 201649418 1.730000e-06 65.8
84 TraesCS6A01G379300 chr4B 97.368 38 1 0 3178 3215 201651671 201651708 1.730000e-06 65.8
85 TraesCS6A01G379300 chr4B 97.368 38 1 0 3178 3215 201652798 201652835 1.730000e-06 65.8
86 TraesCS6A01G379300 chr4B 97.368 38 1 0 3178 3215 201653942 201653979 1.730000e-06 65.8
87 TraesCS6A01G379300 chr4B 94.737 38 2 0 3178 3215 201650525 201650562 8.030000e-05 60.2
88 TraesCS6A01G379300 chr3B 86.207 232 32 0 4563 4794 813885322 813885553 1.230000e-62 252.0
89 TraesCS6A01G379300 chr3B 91.525 59 2 2 3010 3065 824185381 824185439 2.220000e-10 78.7
90 TraesCS6A01G379300 chr1D 82.039 206 25 9 6857 7053 345710616 345710818 1.650000e-36 165.0
91 TraesCS6A01G379300 chr1D 95.918 49 1 1 3017 3065 73677359 73677312 2.220000e-10 78.7
92 TraesCS6A01G379300 chr2B 80.734 218 29 8 6868 7080 690733705 690733914 2.770000e-34 158.0
93 TraesCS6A01G379300 chr2B 88.060 67 4 4 5329 5394 124110 124173 7.970000e-10 76.8
94 TraesCS6A01G379300 chr1B 78.486 251 39 11 6864 7103 482467908 482468154 4.630000e-32 150.0
95 TraesCS6A01G379300 chr1B 100.000 45 0 0 3021 3065 8935630 8935586 4.770000e-12 84.2
96 TraesCS6A01G379300 chrUn 91.525 59 5 0 3157 3215 368214340 368214282 1.710000e-11 82.4
97 TraesCS6A01G379300 chrUn 97.826 46 1 0 3020 3065 184613541 184613586 6.160000e-11 80.5
98 TraesCS6A01G379300 chrUn 97.826 46 1 0 3020 3065 202220450 202220495 6.160000e-11 80.5
99 TraesCS6A01G379300 chrUn 97.826 46 1 0 3020 3065 204468997 204469042 6.160000e-11 80.5
100 TraesCS6A01G379300 chrUn 97.826 46 1 0 3020 3065 232415121 232415076 6.160000e-11 80.5
101 TraesCS6A01G379300 chrUn 97.826 46 1 0 3020 3065 344799112 344799067 6.160000e-11 80.5
102 TraesCS6A01G379300 chrUn 94.118 51 3 0 3020 3070 45523496 45523546 2.220000e-10 78.7
103 TraesCS6A01G379300 chrUn 94.000 50 3 0 3016 3065 25041043 25040994 7.970000e-10 76.8
104 TraesCS6A01G379300 chrUn 94.000 50 2 1 3016 3065 75937480 75937432 2.870000e-09 75.0
105 TraesCS6A01G379300 chrUn 97.619 42 1 0 3024 3065 35713342 35713301 1.030000e-08 73.1
106 TraesCS6A01G379300 chrUn 93.878 49 2 1 3017 3065 100242001 100242048 1.030000e-08 73.1
107 TraesCS6A01G379300 chr3A 90.323 62 5 1 5325 5385 730013841 730013780 6.160000e-11 80.5
108 TraesCS6A01G379300 chr3A 90.323 62 5 1 5325 5385 730033686 730033625 6.160000e-11 80.5
109 TraesCS6A01G379300 chr3A 97.727 44 1 0 5075 5118 511872327 511872284 7.970000e-10 76.8
110 TraesCS6A01G379300 chr3A 89.831 59 5 1 3007 3065 572598429 572598486 2.870000e-09 75.0
111 TraesCS6A01G379300 chr3A 87.692 65 7 1 5322 5385 730461405 730461469 2.870000e-09 75.0
112 TraesCS6A01G379300 chr3A 87.692 65 7 1 5322 5385 730510391 730510455 2.870000e-09 75.0
113 TraesCS6A01G379300 chr3A 88.710 62 6 1 5325 5385 730510632 730510693 2.870000e-09 75.0
114 TraesCS6A01G379300 chr4D 97.778 45 1 0 3021 3065 84128961 84128917 2.220000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G379300 chr6A 600127268 600134679 7411 True 13688.000000 13688 100.000000 1 7412 1 chr6A.!!$R2 7411
1 TraesCS6A01G379300 chr6A 600253266 600260684 7418 False 13428.000000 13428 99.353000 1 7412 1 chr6A.!!$F5 7411
2 TraesCS6A01G379300 chr6B 689522108 689529949 7841 True 779.711111 1190 92.537111 10 6630 9 chr6B.!!$R5 6620
3 TraesCS6A01G379300 chr5D 467846329 467846948 619 False 608.000000 608 84.640000 6799 7412 1 chr5D.!!$F1 613
4 TraesCS6A01G379300 chr2D 620315448 620316085 637 False 595.000000 595 83.926000 6783 7412 1 chr2D.!!$F3 629
5 TraesCS6A01G379300 chr7A 686928890 686929514 624 True 507.000000 507 81.629000 6799 7412 1 chr7A.!!$R3 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2487 5030 7.227314 TGAGGCTTTATATATGCTTGTTGTGAG 59.773 37.037 0.00 0.0 0.0 3.51 F
3017 5560 2.303600 ACATCCAGTTAACAACCCGCTA 59.696 45.455 8.61 0.0 0.0 4.26 F
4745 7333 3.198635 CCACCACTCACCATCTATCTTGT 59.801 47.826 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4498 7085 8.234546 GCTCAGACTTATAAAATGGAAAAACGA 58.765 33.333 0.00 0.0 0.00 3.85 R
4801 7389 0.178932 ACTCCCACTGTGGCTAGTCA 60.179 55.000 21.47 0.0 35.79 3.41 R
6960 9594 7.630242 ATTTCTCGATTCATACCACAAACAT 57.370 32.000 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2487 5030 7.227314 TGAGGCTTTATATATGCTTGTTGTGAG 59.773 37.037 0.00 0.00 0.00 3.51
2770 5313 6.500684 ACATTCAATTCTGTTAATGCGACT 57.499 33.333 0.00 0.00 33.57 4.18
2871 5414 3.490348 CCCTCATGGTCACACTTTTCTT 58.510 45.455 0.00 0.00 0.00 2.52
3011 5554 7.801783 GCTAACTAACAACATCCAGTTAACAAC 59.198 37.037 8.61 0.00 38.74 3.32
3017 5560 2.303600 ACATCCAGTTAACAACCCGCTA 59.696 45.455 8.61 0.00 0.00 4.26
3037 5580 4.083696 GCTAGCTACATACTCTCTCCGTTC 60.084 50.000 7.70 0.00 0.00 3.95
3051 5594 5.422331 TCTCTCCGTTCCAAAATAGATGACT 59.578 40.000 0.00 0.00 0.00 3.41
3052 5595 5.661458 TCTCCGTTCCAAAATAGATGACTC 58.339 41.667 0.00 0.00 0.00 3.36
3053 5596 5.186992 TCTCCGTTCCAAAATAGATGACTCA 59.813 40.000 0.00 0.00 0.00 3.41
3054 5597 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3055 5598 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3057 5600 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3059 5602 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3060 5603 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3061 5604 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3062 5605 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4343 6930 6.512903 GCTTGTTTTTACTACTTTTCGCTCCT 60.513 38.462 0.00 0.00 0.00 3.69
4472 7059 8.209802 TGTTAATTAGTACTCCCTTCTTTCCA 57.790 34.615 0.00 0.00 0.00 3.53
4745 7333 3.198635 CCACCACTCACCATCTATCTTGT 59.801 47.826 0.00 0.00 0.00 3.16
4801 7389 4.288887 CAGAAAAGAGGTAGTACCCCCTTT 59.711 45.833 22.18 22.18 40.79 3.11
5073 7661 4.093743 TGTTACTCTCCATTGTGGCTAGA 58.906 43.478 0.00 0.00 37.47 2.43
5240 7828 4.180817 CGAACTGACCACTGCATGTTATA 58.819 43.478 0.00 0.00 0.00 0.98
5276 7864 4.261801 AGTCATTAAAAGCATACACGCCT 58.738 39.130 0.00 0.00 0.00 5.52
5365 7953 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2487 5030 4.331992 GGAGCCGTTTCTTAGTCCAATAAC 59.668 45.833 0.00 0.0 0.00 1.89
2823 5366 8.958060 TGGAGAAAATATGTAGCCTCTAGTAT 57.042 34.615 0.00 0.0 0.00 2.12
3011 5554 2.745281 GAGAGAGTATGTAGCTAGCGGG 59.255 54.545 9.55 0.0 0.00 6.13
3017 5560 3.215975 GGAACGGAGAGAGTATGTAGCT 58.784 50.000 0.00 0.0 0.00 3.32
3037 5580 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.0 40.00 3.28
3051 5594 4.159135 GTCCCGAGGATAGTACAAAGTTGA 59.841 45.833 0.00 0.0 32.73 3.18
3052 5595 4.159879 AGTCCCGAGGATAGTACAAAGTTG 59.840 45.833 0.00 0.0 32.73 3.16
3053 5596 4.351127 AGTCCCGAGGATAGTACAAAGTT 58.649 43.478 0.00 0.0 32.73 2.66
3054 5597 3.978610 AGTCCCGAGGATAGTACAAAGT 58.021 45.455 0.00 0.0 32.73 2.66
3055 5598 4.683832 CAAGTCCCGAGGATAGTACAAAG 58.316 47.826 0.00 0.0 32.73 2.77
3057 5600 2.429610 GCAAGTCCCGAGGATAGTACAA 59.570 50.000 0.00 0.0 32.73 2.41
3059 5602 1.001597 CGCAAGTCCCGAGGATAGTAC 60.002 57.143 0.00 0.0 32.73 2.73
3060 5603 1.315690 CGCAAGTCCCGAGGATAGTA 58.684 55.000 0.00 0.0 32.73 1.82
3061 5604 2.017559 GCGCAAGTCCCGAGGATAGT 62.018 60.000 0.30 0.0 41.68 2.12
3062 5605 1.300233 GCGCAAGTCCCGAGGATAG 60.300 63.158 0.30 0.0 41.68 2.08
4498 7085 8.234546 GCTCAGACTTATAAAATGGAAAAACGA 58.765 33.333 0.00 0.0 0.00 3.85
4499 7086 8.237267 AGCTCAGACTTATAAAATGGAAAAACG 58.763 33.333 0.00 0.0 0.00 3.60
4500 7087 9.561270 GAGCTCAGACTTATAAAATGGAAAAAC 57.439 33.333 9.40 0.0 0.00 2.43
4501 7088 9.520515 AGAGCTCAGACTTATAAAATGGAAAAA 57.479 29.630 17.77 0.0 0.00 1.94
4745 7333 6.071391 GGGCTCAATTTGTAAATCTCTCCAAA 60.071 38.462 0.00 0.0 0.00 3.28
4801 7389 0.178932 ACTCCCACTGTGGCTAGTCA 60.179 55.000 21.47 0.0 35.79 3.41
4873 7461 8.006298 ACAACTATCTCTCTCCTCATTAACTG 57.994 38.462 0.00 0.0 0.00 3.16
4916 7504 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.0 45.03 2.74
5240 7828 8.515414 GCTTTTAATGACTTGAGACTACCAAAT 58.485 33.333 0.00 0.0 0.00 2.32
5276 7864 6.962182 AGGAATCAACCAATAAGAGATGTGA 58.038 36.000 0.00 0.0 0.00 3.58
5429 8017 2.042979 AGGGGCCTTGAAGCATTTTCTA 59.957 45.455 0.84 0.0 0.00 2.10
6960 9594 7.630242 ATTTCTCGATTCATACCACAAACAT 57.370 32.000 0.00 0.0 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.