Multiple sequence alignment - TraesCS6A01G377900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G377900 chr6A 100.000 5442 0 0 1 5442 599030710 599036151 0.000000e+00 10050.0
1 TraesCS6A01G377900 chr6D 91.070 2206 128 38 2372 4553 452952983 452955143 0.000000e+00 2918.0
2 TraesCS6A01G377900 chr6D 89.306 692 45 13 3 683 452950616 452951289 0.000000e+00 841.0
3 TraesCS6A01G377900 chr6D 92.871 505 23 5 1870 2366 452952447 452952946 0.000000e+00 721.0
4 TraesCS6A01G377900 chr6D 91.509 424 19 5 796 1213 452951419 452951831 7.910000e-158 568.0
5 TraesCS6A01G377900 chr6D 79.501 761 54 39 4767 5442 452955282 452956025 1.080000e-121 448.0
6 TraesCS6A01G377900 chr6D 77.400 500 44 36 1179 1676 452952009 452952441 3.280000e-57 233.0
7 TraesCS6A01G377900 chr6B 85.173 1821 139 50 1960 3744 688204413 688206138 0.000000e+00 1746.0
8 TraesCS6A01G377900 chr6B 91.042 1027 49 21 3740 4753 688206251 688207247 0.000000e+00 1347.0
9 TraesCS6A01G377900 chr6B 89.758 703 41 9 1 683 688202549 688203240 0.000000e+00 870.0
10 TraesCS6A01G377900 chr6B 86.456 443 33 15 786 1213 688203379 688203809 1.380000e-125 460.0
11 TraesCS6A01G377900 chr6B 83.333 522 34 26 4952 5442 688207410 688207909 3.010000e-117 433.0
12 TraesCS6A01G377900 chr6B 91.463 82 6 1 1746 1826 688204122 688204203 1.600000e-20 111.0
13 TraesCS6A01G377900 chr6B 94.118 51 3 0 1399 1449 688203879 688203929 1.630000e-10 78.7
14 TraesCS6A01G377900 chr5B 82.075 212 21 9 1491 1696 655980014 655979814 1.210000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G377900 chr6A 599030710 599036151 5441 False 10050.000000 10050 100.000000 1 5442 1 chr6A.!!$F1 5441
1 TraesCS6A01G377900 chr6D 452950616 452956025 5409 False 954.833333 2918 86.942833 3 5442 6 chr6D.!!$F1 5439
2 TraesCS6A01G377900 chr6B 688202549 688207909 5360 False 720.814286 1746 88.763286 1 5442 7 chr6B.!!$F1 5441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 736 0.119155 ACCTCCTCCACCTCCAATGA 59.881 55.000 0.00 0.00 0.00 2.57 F
1350 1669 0.172803 AGGCTCCGTTAACGTGCTAG 59.827 55.000 28.94 20.34 37.20 3.42 F
1479 1799 0.179094 TTTTCGTGTGCTCTGTCCGT 60.179 50.000 0.00 0.00 0.00 4.69 F
1481 1801 0.179094 TTCGTGTGCTCTGTCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60 F
1542 1862 0.322456 TGTTGGGATTCTTCAGGCGG 60.322 55.000 0.00 0.00 0.00 6.13 F
1760 2080 0.710567 GATATTGAGCATCGCGTCCG 59.289 55.000 5.77 0.00 38.61 4.79 F
1782 2102 0.779997 AAGGTTTGGGCATCTCCTGT 59.220 50.000 0.00 0.00 34.39 4.00 F
1826 2146 1.282157 GGTGGTAGAGCTGTGGGATTT 59.718 52.381 0.00 0.00 0.00 2.17 F
2640 3107 1.300931 GACCAGCTTGTCGACAGCA 60.301 57.895 29.03 14.29 0.00 4.41 F
4081 4679 0.388649 AAGAGTGCGAGCAGGTAACG 60.389 55.000 0.00 0.00 46.39 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1868 0.028770 ACAAATGCACGACACAACCG 59.971 50.000 0.00 0.00 0.00 4.44 R
2621 3088 1.300931 GCTGTCGACAAGCTGGTCA 60.301 57.895 21.19 5.72 37.66 4.02 R
3433 3909 0.469494 AACAGCCCTTTTGCCTTTGG 59.531 50.000 0.00 0.00 0.00 3.28 R
3440 3916 0.829990 ACACCCAAACAGCCCTTTTG 59.170 50.000 0.00 0.00 34.31 2.44 R
3444 3920 1.710809 AGATTACACCCAAACAGCCCT 59.289 47.619 0.00 0.00 0.00 5.19 R
3445 3921 2.215942 AGATTACACCCAAACAGCCC 57.784 50.000 0.00 0.00 0.00 5.19 R
3447 3923 3.127030 GCACTAGATTACACCCAAACAGC 59.873 47.826 0.00 0.00 0.00 4.40 R
3448 3924 4.323417 TGCACTAGATTACACCCAAACAG 58.677 43.478 0.00 0.00 0.00 3.16 R
4107 4705 0.178992 TCAGAAAAGTGTGGGCTGGG 60.179 55.000 0.00 0.00 0.00 4.45 R
5089 5764 0.103208 AACCGGATGAGATGAGACGC 59.897 55.000 9.46 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.558470 CCACATAATGACAACACGAAATGC 59.442 41.667 0.00 0.00 0.00 3.56
71 72 5.152804 CACATAATGACAACACGAAATGCA 58.847 37.500 0.00 0.00 0.00 3.96
77 78 1.111667 CAACACGAAATGCACACACG 58.888 50.000 0.00 0.00 0.00 4.49
86 88 0.737804 ATGCACACACGCACTTCAAA 59.262 45.000 0.00 0.00 46.56 2.69
88 90 0.592247 GCACACACGCACTTCAAAGG 60.592 55.000 0.00 0.00 0.00 3.11
116 118 1.209504 GATCCAACCAATCGACCAGGA 59.790 52.381 6.62 0.68 0.00 3.86
117 119 1.285280 TCCAACCAATCGACCAGGAT 58.715 50.000 6.62 0.00 0.00 3.24
118 120 1.065491 TCCAACCAATCGACCAGGATG 60.065 52.381 6.62 5.06 0.00 3.51
119 121 1.065491 CCAACCAATCGACCAGGATGA 60.065 52.381 10.28 0.00 39.69 2.92
120 122 2.421952 CCAACCAATCGACCAGGATGAT 60.422 50.000 10.28 0.00 39.69 2.45
121 123 2.615447 CAACCAATCGACCAGGATGATG 59.385 50.000 6.62 0.00 39.69 3.07
122 124 2.118679 ACCAATCGACCAGGATGATGA 58.881 47.619 6.62 0.00 39.69 2.92
123 125 2.103771 ACCAATCGACCAGGATGATGAG 59.896 50.000 6.62 0.00 39.69 2.90
124 126 2.141517 CAATCGACCAGGATGATGAGC 58.858 52.381 0.00 0.00 39.69 4.26
125 127 1.417288 ATCGACCAGGATGATGAGCA 58.583 50.000 0.00 0.00 39.69 4.26
202 204 0.259938 AATCAGGCTCCCCATCAACC 59.740 55.000 0.00 0.00 0.00 3.77
268 270 2.039418 TCTTCATACTCCACATCCCCG 58.961 52.381 0.00 0.00 0.00 5.73
313 315 0.546122 CCTGATGAACCCCCGAATCA 59.454 55.000 0.00 0.00 0.00 2.57
316 318 0.254747 GATGAACCCCCGAATCACCA 59.745 55.000 0.00 0.00 0.00 4.17
333 335 1.616921 CATTCCTCCAGGCACCCAT 59.383 57.895 0.00 0.00 34.44 4.00
342 353 1.281867 CCAGGCACCCATCTCTACAAA 59.718 52.381 0.00 0.00 0.00 2.83
344 355 3.624777 CAGGCACCCATCTCTACAAAAT 58.375 45.455 0.00 0.00 0.00 1.82
364 378 7.121020 ACAAAATCACAAGCAAAAGGAACAATT 59.879 29.630 0.00 0.00 0.00 2.32
369 383 8.177119 TCACAAGCAAAAGGAACAATTACTAT 57.823 30.769 0.00 0.00 0.00 2.12
381 395 9.449719 AGGAACAATTACTATCTAAACAAGTGG 57.550 33.333 0.00 0.00 0.00 4.00
404 418 8.242739 GTGGAGTAGTACTCTGTAAACCTAAAG 58.757 40.741 25.70 0.00 44.46 1.85
407 421 6.666980 AGTAGTACTCTGTAAACCTAAAGGGG 59.333 42.308 0.00 0.00 40.27 4.79
408 422 5.409712 AGTACTCTGTAAACCTAAAGGGGT 58.590 41.667 0.20 0.00 42.05 4.95
683 703 1.589196 GCCTCGTGTACCTCATCGC 60.589 63.158 0.00 0.00 0.00 4.58
684 704 1.065928 CCTCGTGTACCTCATCGCC 59.934 63.158 0.00 0.00 0.00 5.54
685 705 1.065928 CTCGTGTACCTCATCGCCC 59.934 63.158 0.00 0.00 0.00 6.13
686 706 2.106332 CGTGTACCTCATCGCCCC 59.894 66.667 0.00 0.00 0.00 5.80
687 707 2.504519 GTGTACCTCATCGCCCCC 59.495 66.667 0.00 0.00 0.00 5.40
688 708 3.151710 TGTACCTCATCGCCCCCG 61.152 66.667 0.00 0.00 0.00 5.73
689 709 4.603946 GTACCTCATCGCCCCCGC 62.604 72.222 0.00 0.00 0.00 6.13
707 727 4.767255 CGCCAGCACCTCCTCCAC 62.767 72.222 0.00 0.00 0.00 4.02
716 736 0.119155 ACCTCCTCCACCTCCAATGA 59.881 55.000 0.00 0.00 0.00 2.57
726 746 3.039202 CTCCAATGACGGCGGCAAC 62.039 63.158 23.82 3.90 0.00 4.17
727 747 3.361158 CCAATGACGGCGGCAACA 61.361 61.111 23.82 10.29 0.00 3.33
805 889 3.462333 CTCGCCGCCTCTCTCTTCG 62.462 68.421 0.00 0.00 0.00 3.79
813 897 1.028905 CCTCTCTCTTCGTGGGCTAG 58.971 60.000 0.00 0.00 0.00 3.42
815 899 0.323451 TCTCTCTTCGTGGGCTAGCA 60.323 55.000 18.24 0.00 0.00 3.49
844 928 3.382832 CTCGGACGAGGCCCAGTT 61.383 66.667 13.59 0.00 38.51 3.16
877 961 4.084537 CGTGGGCTGTATAAAATAGCGAAG 60.085 45.833 0.00 0.00 38.31 3.79
941 1040 1.066286 CCTCTGAACTCTGAAGCCTGG 60.066 57.143 0.00 0.00 0.00 4.45
972 1074 0.397816 AGGAAGGGGAGAGATCACCG 60.398 60.000 0.00 0.00 0.00 4.94
1161 1263 1.067582 CGGATCCGGTAAGCACCTC 59.932 63.158 26.95 0.00 43.33 3.85
1167 1269 2.675371 GGTAAGCACCTCACCCCC 59.325 66.667 0.00 0.00 42.11 5.40
1169 1271 1.002502 GTAAGCACCTCACCCCCAC 60.003 63.158 0.00 0.00 0.00 4.61
1192 1294 2.813908 ACCACGAGCCGCGAAATC 60.814 61.111 8.23 0.69 44.57 2.17
1200 1302 2.268298 GAGCCGCGAAATCTACTTTGA 58.732 47.619 8.23 0.00 0.00 2.69
1213 1315 1.818642 ACTTTGATGCTGCTCCTGTC 58.181 50.000 0.00 0.00 0.00 3.51
1214 1316 1.093159 CTTTGATGCTGCTCCTGTCC 58.907 55.000 0.00 0.00 0.00 4.02
1215 1317 0.674581 TTTGATGCTGCTCCTGTCCG 60.675 55.000 0.00 0.00 0.00 4.79
1216 1318 2.202987 GATGCTGCTCCTGTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
1217 1319 3.005539 ATGCTGCTCCTGTCCGGT 61.006 61.111 0.00 0.00 0.00 5.28
1219 1321 3.695606 GCTGCTCCTGTCCGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
1220 1322 3.023949 GCTGCTCCTGTCCGGTGAT 62.024 63.158 0.00 0.00 0.00 3.06
1221 1323 1.599047 CTGCTCCTGTCCGGTGATT 59.401 57.895 0.00 0.00 0.00 2.57
1223 1325 1.296715 GCTCCTGTCCGGTGATTGT 59.703 57.895 0.00 0.00 0.00 2.71
1224 1326 0.535335 GCTCCTGTCCGGTGATTGTA 59.465 55.000 0.00 0.00 0.00 2.41
1225 1327 1.139058 GCTCCTGTCCGGTGATTGTAT 59.861 52.381 0.00 0.00 0.00 2.29
1226 1328 2.826428 CTCCTGTCCGGTGATTGTATG 58.174 52.381 0.00 0.00 0.00 2.39
1228 1330 1.209504 CCTGTCCGGTGATTGTATGGT 59.790 52.381 0.00 0.00 0.00 3.55
1229 1331 2.355716 CCTGTCCGGTGATTGTATGGTT 60.356 50.000 0.00 0.00 0.00 3.67
1230 1332 2.936498 CTGTCCGGTGATTGTATGGTTC 59.064 50.000 0.00 0.00 0.00 3.62
1231 1333 1.931172 GTCCGGTGATTGTATGGTTCG 59.069 52.381 0.00 0.00 0.00 3.95
1232 1334 1.134640 TCCGGTGATTGTATGGTTCGG 60.135 52.381 0.00 0.00 37.82 4.30
1233 1335 1.134640 CCGGTGATTGTATGGTTCGGA 60.135 52.381 0.00 0.00 38.64 4.55
1234 1336 1.931172 CGGTGATTGTATGGTTCGGAC 59.069 52.381 0.00 0.00 0.00 4.79
1235 1337 1.931172 GGTGATTGTATGGTTCGGACG 59.069 52.381 0.00 0.00 0.00 4.79
1236 1338 1.931172 GTGATTGTATGGTTCGGACGG 59.069 52.381 0.00 0.00 0.00 4.79
1237 1339 1.134640 TGATTGTATGGTTCGGACGGG 60.135 52.381 0.00 0.00 0.00 5.28
1238 1340 0.906775 ATTGTATGGTTCGGACGGGT 59.093 50.000 0.00 0.00 0.00 5.28
1239 1341 0.247185 TTGTATGGTTCGGACGGGTC 59.753 55.000 0.00 0.00 0.00 4.46
1240 1342 1.142531 GTATGGTTCGGACGGGTCC 59.857 63.158 7.82 7.82 46.18 4.46
1252 1354 3.650950 GGGTCCTTCTGCTGGGCA 61.651 66.667 0.00 0.00 36.92 5.36
1293 1395 2.494059 CCGGATGATTTAGGCACGAAT 58.506 47.619 0.00 0.00 0.00 3.34
1294 1396 2.224079 CCGGATGATTTAGGCACGAATG 59.776 50.000 0.00 0.00 0.00 2.67
1297 1399 4.552767 CGGATGATTTAGGCACGAATGTTC 60.553 45.833 0.00 0.00 0.00 3.18
1299 1401 4.944962 TGATTTAGGCACGAATGTTCAG 57.055 40.909 0.00 0.00 0.00 3.02
1300 1402 4.574892 TGATTTAGGCACGAATGTTCAGA 58.425 39.130 0.00 0.00 0.00 3.27
1301 1403 4.391830 TGATTTAGGCACGAATGTTCAGAC 59.608 41.667 0.00 0.00 0.00 3.51
1304 1623 2.417719 AGGCACGAATGTTCAGACTTC 58.582 47.619 0.00 0.00 0.00 3.01
1310 1629 2.028112 CGAATGTTCAGACTTCAGGGGA 60.028 50.000 0.00 0.00 0.00 4.81
1314 1633 2.978978 TGTTCAGACTTCAGGGGATTGA 59.021 45.455 0.00 0.00 0.00 2.57
1320 1639 4.579340 CAGACTTCAGGGGATTGATTGATG 59.421 45.833 0.00 0.00 0.00 3.07
1324 1643 3.889815 TCAGGGGATTGATTGATGTGAC 58.110 45.455 0.00 0.00 0.00 3.67
1325 1644 3.524789 TCAGGGGATTGATTGATGTGACT 59.475 43.478 0.00 0.00 0.00 3.41
1326 1645 3.630769 CAGGGGATTGATTGATGTGACTG 59.369 47.826 0.00 0.00 0.00 3.51
1328 1647 2.032550 GGGATTGATTGATGTGACTGCG 59.967 50.000 0.00 0.00 0.00 5.18
1329 1648 2.679837 GGATTGATTGATGTGACTGCGT 59.320 45.455 0.00 0.00 0.00 5.24
1330 1649 3.486375 GGATTGATTGATGTGACTGCGTG 60.486 47.826 0.00 0.00 0.00 5.34
1331 1650 2.453983 TGATTGATGTGACTGCGTGA 57.546 45.000 0.00 0.00 0.00 4.35
1332 1651 2.340337 TGATTGATGTGACTGCGTGAG 58.660 47.619 0.00 0.00 0.00 3.51
1333 1652 1.662629 GATTGATGTGACTGCGTGAGG 59.337 52.381 0.00 0.00 0.00 3.86
1334 1653 0.950555 TTGATGTGACTGCGTGAGGC 60.951 55.000 0.00 0.00 43.96 4.70
1335 1654 1.079543 GATGTGACTGCGTGAGGCT 60.080 57.895 0.00 0.00 44.05 4.58
1338 1657 4.056125 TGACTGCGTGAGGCTCCG 62.056 66.667 12.86 15.63 44.05 4.63
1340 1659 3.575351 GACTGCGTGAGGCTCCGTT 62.575 63.158 20.94 10.10 44.05 4.44
1350 1669 0.172803 AGGCTCCGTTAACGTGCTAG 59.827 55.000 28.94 20.34 37.20 3.42
1359 1678 4.433805 CCGTTAACGTGCTAGATGTTGTTC 60.434 45.833 25.15 0.00 35.33 3.18
1361 1680 5.107607 CGTTAACGTGCTAGATGTTGTTCTT 60.108 40.000 19.75 0.00 35.33 2.52
1366 1685 4.667668 CGTGCTAGATGTTGTTCTTTCTGC 60.668 45.833 0.00 0.00 0.00 4.26
1371 1690 4.601019 AGATGTTGTTCTTTCTGCGTTTG 58.399 39.130 0.00 0.00 0.00 2.93
1374 1693 3.375610 TGTTGTTCTTTCTGCGTTTGCTA 59.624 39.130 0.00 0.00 43.34 3.49
1389 1709 2.478872 TGCTAGGACTGGGCTAGAAT 57.521 50.000 4.33 0.00 0.00 2.40
1390 1710 2.042464 TGCTAGGACTGGGCTAGAATG 58.958 52.381 4.33 0.00 0.00 2.67
1393 1713 3.257127 GCTAGGACTGGGCTAGAATGTAG 59.743 52.174 4.33 1.39 0.00 2.74
1394 1714 3.406512 AGGACTGGGCTAGAATGTAGT 57.593 47.619 4.33 0.00 0.00 2.73
1395 1715 3.034635 AGGACTGGGCTAGAATGTAGTG 58.965 50.000 4.33 0.00 0.00 2.74
1396 1716 3.031736 GGACTGGGCTAGAATGTAGTGA 58.968 50.000 4.33 0.00 0.00 3.41
1397 1717 3.643792 GGACTGGGCTAGAATGTAGTGAT 59.356 47.826 4.33 0.00 0.00 3.06
1456 1776 3.093172 TGTGTGGTGGCCTGGTGA 61.093 61.111 3.32 0.00 0.00 4.02
1460 1780 4.918360 TGGTGGCCTGGTGAGGGT 62.918 66.667 3.32 0.00 40.19 4.34
1473 1793 0.468226 TGAGGGTTTTCGTGTGCTCT 59.532 50.000 0.00 0.00 0.00 4.09
1474 1794 0.868406 GAGGGTTTTCGTGTGCTCTG 59.132 55.000 0.00 0.00 0.00 3.35
1475 1795 0.180406 AGGGTTTTCGTGTGCTCTGT 59.820 50.000 0.00 0.00 0.00 3.41
1476 1796 0.586802 GGGTTTTCGTGTGCTCTGTC 59.413 55.000 0.00 0.00 0.00 3.51
1477 1797 0.586802 GGTTTTCGTGTGCTCTGTCC 59.413 55.000 0.00 0.00 0.00 4.02
1478 1798 0.232303 GTTTTCGTGTGCTCTGTCCG 59.768 55.000 0.00 0.00 0.00 4.79
1479 1799 0.179094 TTTTCGTGTGCTCTGTCCGT 60.179 50.000 0.00 0.00 0.00 4.69
1480 1800 0.179094 TTTCGTGTGCTCTGTCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
1481 1801 0.179094 TTCGTGTGCTCTGTCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
1482 1802 0.669619 TCGTGTGCTCTGTCCGTTTA 59.330 50.000 0.00 0.00 0.00 2.01
1483 1803 1.067364 TCGTGTGCTCTGTCCGTTTAA 59.933 47.619 0.00 0.00 0.00 1.52
1484 1804 1.862201 CGTGTGCTCTGTCCGTTTAAA 59.138 47.619 0.00 0.00 0.00 1.52
1485 1805 2.478894 CGTGTGCTCTGTCCGTTTAAAT 59.521 45.455 0.00 0.00 0.00 1.40
1486 1806 3.664276 CGTGTGCTCTGTCCGTTTAAATG 60.664 47.826 0.04 0.04 0.00 2.32
1487 1807 2.811431 TGTGCTCTGTCCGTTTAAATGG 59.189 45.455 18.89 18.89 36.38 3.16
1488 1808 1.810151 TGCTCTGTCCGTTTAAATGGC 59.190 47.619 19.95 15.29 34.98 4.40
1528 1848 5.446143 TGGTGCTGTAGTTAAAATGTTGG 57.554 39.130 0.00 0.00 0.00 3.77
1530 1850 4.521256 GGTGCTGTAGTTAAAATGTTGGGA 59.479 41.667 0.00 0.00 0.00 4.37
1531 1851 5.185056 GGTGCTGTAGTTAAAATGTTGGGAT 59.815 40.000 0.00 0.00 0.00 3.85
1532 1852 6.295067 GGTGCTGTAGTTAAAATGTTGGGATT 60.295 38.462 0.00 0.00 0.00 3.01
1533 1853 6.806739 GTGCTGTAGTTAAAATGTTGGGATTC 59.193 38.462 0.00 0.00 0.00 2.52
1534 1854 6.719370 TGCTGTAGTTAAAATGTTGGGATTCT 59.281 34.615 0.00 0.00 0.00 2.40
1535 1855 7.232534 TGCTGTAGTTAAAATGTTGGGATTCTT 59.767 33.333 0.00 0.00 0.00 2.52
1536 1856 7.755373 GCTGTAGTTAAAATGTTGGGATTCTTC 59.245 37.037 0.00 0.00 0.00 2.87
1537 1857 8.698973 TGTAGTTAAAATGTTGGGATTCTTCA 57.301 30.769 0.00 0.00 0.00 3.02
1538 1858 8.792633 TGTAGTTAAAATGTTGGGATTCTTCAG 58.207 33.333 0.00 0.00 0.00 3.02
1539 1859 7.232118 AGTTAAAATGTTGGGATTCTTCAGG 57.768 36.000 0.00 0.00 0.00 3.86
1540 1860 4.541973 AAAATGTTGGGATTCTTCAGGC 57.458 40.909 0.00 0.00 0.00 4.85
1541 1861 1.755179 ATGTTGGGATTCTTCAGGCG 58.245 50.000 0.00 0.00 0.00 5.52
1542 1862 0.322456 TGTTGGGATTCTTCAGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
1543 1863 1.032114 GTTGGGATTCTTCAGGCGGG 61.032 60.000 0.00 0.00 0.00 6.13
1544 1864 2.193248 GGGATTCTTCAGGCGGGG 59.807 66.667 0.00 0.00 0.00 5.73
1545 1865 2.517166 GGATTCTTCAGGCGGGGC 60.517 66.667 0.00 0.00 0.00 5.80
1546 1866 2.592308 GATTCTTCAGGCGGGGCT 59.408 61.111 0.00 0.00 0.00 5.19
1547 1867 1.821332 GATTCTTCAGGCGGGGCTG 60.821 63.158 15.40 15.40 0.00 4.85
1548 1868 4.722700 TTCTTCAGGCGGGGCTGC 62.723 66.667 16.58 0.00 0.00 5.25
1560 1880 4.012895 GGCTGCGGTTGTGTCGTG 62.013 66.667 0.00 0.00 0.00 4.35
1575 1895 1.264020 GTCGTGCATTTGTGCTTGAGA 59.736 47.619 0.00 0.00 35.49 3.27
1584 1904 2.189594 TGTGCTTGAGATGGAACTGG 57.810 50.000 0.00 0.00 0.00 4.00
1589 1909 2.877300 GCTTGAGATGGAACTGGCTCAA 60.877 50.000 0.00 0.00 43.00 3.02
1676 1996 2.439409 CACTGCACTGGAATGGATGAA 58.561 47.619 0.00 0.00 0.00 2.57
1677 1997 2.821378 CACTGCACTGGAATGGATGAAA 59.179 45.455 0.00 0.00 0.00 2.69
1678 1998 3.446161 CACTGCACTGGAATGGATGAAAT 59.554 43.478 0.00 0.00 0.00 2.17
1683 2003 3.028850 ACTGGAATGGATGAAATGCTGG 58.971 45.455 0.00 0.00 34.76 4.85
1684 2004 1.758280 TGGAATGGATGAAATGCTGGC 59.242 47.619 0.00 0.00 34.76 4.85
1686 2006 0.748450 AATGGATGAAATGCTGGCCG 59.252 50.000 0.00 0.00 34.76 6.13
1690 2010 1.537202 GGATGAAATGCTGGCCGATAC 59.463 52.381 0.00 0.00 0.00 2.24
1691 2011 2.498167 GATGAAATGCTGGCCGATACT 58.502 47.619 0.00 0.00 0.00 2.12
1692 2012 2.418368 TGAAATGCTGGCCGATACTT 57.582 45.000 0.00 0.00 0.00 2.24
1693 2013 2.722094 TGAAATGCTGGCCGATACTTT 58.278 42.857 0.00 0.00 0.00 2.66
1694 2014 3.088532 TGAAATGCTGGCCGATACTTTT 58.911 40.909 0.00 0.00 0.00 2.27
1695 2015 3.509575 TGAAATGCTGGCCGATACTTTTT 59.490 39.130 0.00 0.00 0.00 1.94
1696 2016 3.508744 AATGCTGGCCGATACTTTTTG 57.491 42.857 0.00 0.00 0.00 2.44
1697 2017 1.904287 TGCTGGCCGATACTTTTTGT 58.096 45.000 0.00 0.00 0.00 2.83
1698 2018 3.060736 TGCTGGCCGATACTTTTTGTA 57.939 42.857 0.00 0.00 35.37 2.41
1699 2019 3.616219 TGCTGGCCGATACTTTTTGTAT 58.384 40.909 0.00 0.00 43.94 2.29
1700 2020 3.376859 TGCTGGCCGATACTTTTTGTATG 59.623 43.478 0.00 0.00 41.55 2.39
1701 2021 3.243068 GCTGGCCGATACTTTTTGTATGG 60.243 47.826 0.00 0.00 41.55 2.74
1702 2022 3.945285 CTGGCCGATACTTTTTGTATGGT 59.055 43.478 0.00 0.00 41.55 3.55
1703 2023 5.100344 TGGCCGATACTTTTTGTATGGTA 57.900 39.130 0.00 0.00 41.55 3.25
1704 2024 5.686753 TGGCCGATACTTTTTGTATGGTAT 58.313 37.500 0.00 0.00 41.55 2.73
1706 2026 5.048991 GGCCGATACTTTTTGTATGGTATGG 60.049 44.000 0.00 0.00 41.55 2.74
1717 2037 8.546083 TTTTGTATGGTATGGCCTATTGAATT 57.454 30.769 3.32 0.00 38.35 2.17
1719 2039 8.546083 TTGTATGGTATGGCCTATTGAATTTT 57.454 30.769 3.32 0.00 38.35 1.82
1721 2041 5.766150 TGGTATGGCCTATTGAATTTTCG 57.234 39.130 3.32 0.00 38.35 3.46
1724 2044 6.153680 TGGTATGGCCTATTGAATTTTCGTTT 59.846 34.615 3.32 0.00 38.35 3.60
1731 2051 4.965042 ATTGAATTTTCGTTTGCGGTTC 57.035 36.364 0.00 0.00 38.89 3.62
1732 2052 3.701532 TGAATTTTCGTTTGCGGTTCT 57.298 38.095 0.00 0.00 38.89 3.01
1733 2053 4.035278 TGAATTTTCGTTTGCGGTTCTT 57.965 36.364 0.00 0.00 38.89 2.52
1734 2054 4.425520 TGAATTTTCGTTTGCGGTTCTTT 58.574 34.783 0.00 0.00 38.89 2.52
1735 2055 4.865365 TGAATTTTCGTTTGCGGTTCTTTT 59.135 33.333 0.00 0.00 38.89 2.27
1736 2056 4.770351 ATTTTCGTTTGCGGTTCTTTTG 57.230 36.364 0.00 0.00 38.89 2.44
1737 2057 2.923605 TTCGTTTGCGGTTCTTTTGT 57.076 40.000 0.00 0.00 38.89 2.83
1738 2058 2.461897 TCGTTTGCGGTTCTTTTGTC 57.538 45.000 0.00 0.00 38.89 3.18
1740 2060 1.530236 CGTTTGCGGTTCTTTTGTCGT 60.530 47.619 0.00 0.00 0.00 4.34
1741 2061 1.843753 GTTTGCGGTTCTTTTGTCGTG 59.156 47.619 0.00 0.00 0.00 4.35
1742 2062 1.370609 TTGCGGTTCTTTTGTCGTGA 58.629 45.000 0.00 0.00 0.00 4.35
1744 2064 2.756829 TGCGGTTCTTTTGTCGTGATA 58.243 42.857 0.00 0.00 0.00 2.15
1745 2065 3.331150 TGCGGTTCTTTTGTCGTGATAT 58.669 40.909 0.00 0.00 0.00 1.63
1746 2066 3.749088 TGCGGTTCTTTTGTCGTGATATT 59.251 39.130 0.00 0.00 0.00 1.28
1747 2067 4.088648 GCGGTTCTTTTGTCGTGATATTG 58.911 43.478 0.00 0.00 0.00 1.90
1748 2068 4.142988 GCGGTTCTTTTGTCGTGATATTGA 60.143 41.667 0.00 0.00 0.00 2.57
1749 2069 5.550981 CGGTTCTTTTGTCGTGATATTGAG 58.449 41.667 0.00 0.00 0.00 3.02
1750 2070 5.324697 GGTTCTTTTGTCGTGATATTGAGC 58.675 41.667 0.00 0.00 0.00 4.26
1751 2071 5.106712 GGTTCTTTTGTCGTGATATTGAGCA 60.107 40.000 0.00 0.00 0.00 4.26
1752 2072 6.403636 GGTTCTTTTGTCGTGATATTGAGCAT 60.404 38.462 0.00 0.00 0.00 3.79
1753 2073 6.349973 TCTTTTGTCGTGATATTGAGCATC 57.650 37.500 0.00 0.00 0.00 3.91
1754 2074 4.777140 TTTGTCGTGATATTGAGCATCG 57.223 40.909 0.00 0.00 38.61 3.84
1755 2075 2.127251 TGTCGTGATATTGAGCATCGC 58.873 47.619 0.00 0.00 38.61 4.58
1756 2076 3.915097 CGTGATATTGAGCATCGCG 57.085 52.632 0.00 0.00 46.19 5.87
1757 2077 1.131771 CGTGATATTGAGCATCGCGT 58.868 50.000 5.77 0.00 46.22 6.01
1758 2078 1.123217 CGTGATATTGAGCATCGCGTC 59.877 52.381 5.77 0.00 46.22 5.19
1759 2079 1.457303 GTGATATTGAGCATCGCGTCC 59.543 52.381 5.77 0.00 38.61 4.79
1760 2080 0.710567 GATATTGAGCATCGCGTCCG 59.289 55.000 5.77 0.00 38.61 4.79
1782 2102 0.779997 AAGGTTTGGGCATCTCCTGT 59.220 50.000 0.00 0.00 34.39 4.00
1787 2107 2.489722 GTTTGGGCATCTCCTGTCTTTC 59.510 50.000 0.00 0.00 34.39 2.62
1797 2117 6.257630 GCATCTCCTGTCTTTCTTTCTCATAC 59.742 42.308 0.00 0.00 0.00 2.39
1826 2146 1.282157 GGTGGTAGAGCTGTGGGATTT 59.718 52.381 0.00 0.00 0.00 2.17
1827 2147 2.633488 GTGGTAGAGCTGTGGGATTTC 58.367 52.381 0.00 0.00 0.00 2.17
1829 2149 2.912956 TGGTAGAGCTGTGGGATTTCTT 59.087 45.455 0.00 0.00 0.00 2.52
1830 2150 3.274288 GGTAGAGCTGTGGGATTTCTTG 58.726 50.000 0.00 0.00 0.00 3.02
1831 2151 3.307762 GGTAGAGCTGTGGGATTTCTTGT 60.308 47.826 0.00 0.00 0.00 3.16
1838 2195 2.171003 GTGGGATTTCTTGTCCAAGGG 58.829 52.381 7.16 0.00 38.88 3.95
1863 2220 2.096496 CCCTTCGTTCAGCTTTAGCATG 59.904 50.000 4.33 0.00 45.16 4.06
1886 2243 4.320870 GGTTTTAGGCAGCTTGTACTGTA 58.679 43.478 0.00 0.00 39.96 2.74
1887 2244 4.758165 GGTTTTAGGCAGCTTGTACTGTAA 59.242 41.667 0.00 0.00 39.96 2.41
1900 2257 6.073276 GCTTGTACTGTAAATGTCATGTGTGA 60.073 38.462 0.00 0.00 0.00 3.58
1943 2300 6.494893 TTACCGTCTCTGGAATTTTTCATG 57.505 37.500 0.00 0.00 0.00 3.07
1949 2306 7.189512 CGTCTCTGGAATTTTTCATGATAACC 58.810 38.462 0.00 0.00 0.00 2.85
1958 2315 1.732941 TCATGATAACCGTGTGGCAC 58.267 50.000 11.55 11.55 39.70 5.01
1994 2393 1.699083 CCAAATTCCAAAAGGGGTGCT 59.301 47.619 0.00 0.00 37.22 4.40
2025 2424 6.986250 ACAGAAGGAAATTCTTTGTCCATTC 58.014 36.000 0.00 0.00 46.49 2.67
2076 2483 3.242518 CATTGTTGCTGACTTGCTGATG 58.757 45.455 0.00 0.00 0.00 3.07
2083 2490 4.074259 TGCTGACTTGCTGATGTATGTTT 58.926 39.130 0.00 0.00 0.00 2.83
2090 2497 7.042797 ACTTGCTGATGTATGTTTTGTTCTT 57.957 32.000 0.00 0.00 0.00 2.52
2326 2733 6.318900 CAGTTCAGTTGTAAGTTCCCTCTTTT 59.681 38.462 0.00 0.00 0.00 2.27
2379 2817 6.968250 GCTCTTGCTTGCTATCTTCATTATT 58.032 36.000 0.00 0.00 36.03 1.40
2389 2827 7.428020 TGCTATCTTCATTATTGATGTTTGCC 58.572 34.615 11.59 0.00 37.06 4.52
2404 2844 4.870363 TGTTTGCCTAACTGAGCATTTTC 58.130 39.130 0.00 0.00 39.11 2.29
2433 2874 5.867903 TTCAAATGGCTTTCTCCAGAAAA 57.132 34.783 3.42 0.00 42.72 2.29
2446 2887 2.848694 TCCAGAAAATCTCATGGGAGCT 59.151 45.455 0.00 0.00 41.13 4.09
2467 2908 9.394477 GGAGCTATTTTTAATTACTTAATGCCG 57.606 33.333 0.00 0.00 0.00 5.69
2487 2928 3.326747 CGGCTGAACTAATATAGTGGCC 58.673 50.000 0.00 0.00 41.74 5.36
2490 2931 5.377478 GGCTGAACTAATATAGTGGCCTTT 58.623 41.667 3.32 0.00 41.82 3.11
2508 2949 4.037446 GCCTTTGTCCATGTTGTTTCAGTA 59.963 41.667 0.00 0.00 0.00 2.74
2512 2953 7.390440 CCTTTGTCCATGTTGTTTCAGTATCTA 59.610 37.037 0.00 0.00 0.00 1.98
2514 2955 9.952030 TTTGTCCATGTTGTTTCAGTATCTATA 57.048 29.630 0.00 0.00 0.00 1.31
2552 2994 3.873361 TGACTGAATATTGTAGCTGCAGC 59.127 43.478 31.53 31.53 42.49 5.25
2570 3012 4.202161 TGCAGCGAACCTTTTTCCATAAAA 60.202 37.500 0.00 0.00 32.75 1.52
2571 3013 4.747605 GCAGCGAACCTTTTTCCATAAAAA 59.252 37.500 0.00 0.00 41.21 1.94
2600 3044 7.621796 TGTTAGAATTCCTCTTTCCCTACTTC 58.378 38.462 0.65 0.00 35.41 3.01
2601 3045 7.236847 TGTTAGAATTCCTCTTTCCCTACTTCA 59.763 37.037 0.65 0.00 35.41 3.02
2633 3100 5.824904 AATTGATGTATGACCAGCTTGTC 57.175 39.130 10.94 10.94 35.77 3.18
2640 3107 1.300931 GACCAGCTTGTCGACAGCA 60.301 57.895 29.03 14.29 0.00 4.41
2642 3109 1.301244 CCAGCTTGTCGACAGCACT 60.301 57.895 29.03 20.78 0.00 4.40
2699 3167 8.190784 GGCTTTGTATCTTACATGCAAGTAATT 58.809 33.333 14.38 8.39 39.00 1.40
2724 3192 2.567169 TCAGGGTGATGTTCCACTACAG 59.433 50.000 0.00 0.00 37.24 2.74
2769 3237 9.730705 CACATGATATTTGGAGGTATTCTACAT 57.269 33.333 0.00 0.00 35.96 2.29
2770 3238 9.730705 ACATGATATTTGGAGGTATTCTACATG 57.269 33.333 0.00 0.00 35.96 3.21
2773 3241 7.879677 TGATATTTGGAGGTATTCTACATGCAG 59.120 37.037 0.00 0.00 41.53 4.41
2774 3242 3.475566 TGGAGGTATTCTACATGCAGC 57.524 47.619 0.00 0.00 35.93 5.25
2834 3308 5.104374 GGAACATGGAAGCAATAATGTGTG 58.896 41.667 0.00 0.00 33.65 3.82
2838 3312 2.889678 TGGAAGCAATAATGTGTGCACA 59.110 40.909 17.42 17.42 46.44 4.57
2856 3330 6.488344 TGTGCACATACTGTTTATTCCTTGAA 59.512 34.615 17.42 0.00 0.00 2.69
2910 3384 5.876357 TCCTTGTAGTTAATTTCCTGCTGT 58.124 37.500 0.00 0.00 0.00 4.40
2923 3397 8.523915 AATTTCCTGCTGTCATGATATGTTTA 57.476 30.769 0.00 0.00 0.00 2.01
2965 3439 6.853279 CACATTTGTGGTTTAGCTTTATCG 57.147 37.500 2.69 0.00 42.10 2.92
2971 3445 6.476243 TGTGGTTTAGCTTTATCGAGTTTC 57.524 37.500 0.00 0.00 0.00 2.78
2974 3448 5.697633 TGGTTTAGCTTTATCGAGTTTCGTT 59.302 36.000 0.00 0.00 41.35 3.85
2978 3452 9.750882 GTTTAGCTTTATCGAGTTTCGTTTAAT 57.249 29.630 0.00 0.00 41.35 1.40
3008 3482 7.829725 TCAGTTAAAATCCACTGAAATCCATG 58.170 34.615 0.00 0.00 45.14 3.66
3014 3488 7.396540 AAATCCACTGAAATCCATGTTACTC 57.603 36.000 0.00 0.00 0.00 2.59
3018 3492 7.861629 TCCACTGAAATCCATGTTACTCTTAT 58.138 34.615 0.00 0.00 0.00 1.73
3076 3550 9.216117 ACAGTACATGTAAATACACCTTTCTTC 57.784 33.333 7.25 0.00 41.60 2.87
3089 3563 2.108250 CCTTTCTTCCTCCACCCTGAAA 59.892 50.000 0.00 0.00 0.00 2.69
3106 3580 3.753815 TGAAACATGAGCAGTTGATGGA 58.246 40.909 0.00 0.00 0.00 3.41
3145 3619 5.049060 GCGAGAGAAGCTGATTGATCTACTA 60.049 44.000 0.00 0.00 0.00 1.82
3184 3658 2.848302 GCGCATGCATAAAGTTTCAGAC 59.152 45.455 19.57 0.00 42.15 3.51
3217 3691 1.554617 AGGGTACAAATTTGCATGGGC 59.445 47.619 18.12 2.52 41.68 5.36
3242 3716 4.454678 TCTTCATCCATACAAGGTGATGC 58.545 43.478 0.00 0.00 35.65 3.91
3262 3736 6.818644 TGATGCTCTATTCCTAGTTTTGTGTC 59.181 38.462 0.00 0.00 0.00 3.67
3272 3748 7.827819 TCCTAGTTTTGTGTCGATTATTCTG 57.172 36.000 0.00 0.00 0.00 3.02
3273 3749 7.608153 TCCTAGTTTTGTGTCGATTATTCTGA 58.392 34.615 0.00 0.00 0.00 3.27
3275 3751 9.529325 CCTAGTTTTGTGTCGATTATTCTGATA 57.471 33.333 0.00 0.00 0.00 2.15
3291 3767 6.502136 TTCTGATATATACTCCTGACTGCG 57.498 41.667 0.00 0.00 0.00 5.18
3292 3768 5.561679 TCTGATATATACTCCTGACTGCGT 58.438 41.667 0.00 0.00 0.00 5.24
3294 3770 5.561679 TGATATATACTCCTGACTGCGTCT 58.438 41.667 9.49 0.00 33.15 4.18
3306 3782 2.917971 GACTGCGTCTCATACTGTGTTC 59.082 50.000 0.00 0.00 0.00 3.18
3434 3910 3.360249 CTATGCAATAGCCAAACTGCC 57.640 47.619 0.00 0.00 40.54 4.85
3437 3913 1.690893 TGCAATAGCCAAACTGCCAAA 59.309 42.857 0.00 0.00 41.13 3.28
3640 4116 4.661222 TGCCCATCAGTTGTGAAGAATAA 58.339 39.130 0.00 0.00 35.88 1.40
3752 4345 2.038820 TCAGTCAGTTGTGATCCATGCA 59.961 45.455 0.00 0.00 34.36 3.96
3754 4347 2.153645 GTCAGTTGTGATCCATGCACA 58.846 47.619 0.00 1.03 43.89 4.57
3828 4423 4.937620 AGCTAATTCGCAGATTGACAAAGA 59.062 37.500 4.63 0.00 35.04 2.52
3829 4424 5.412594 AGCTAATTCGCAGATTGACAAAGAA 59.587 36.000 4.63 0.00 35.04 2.52
3830 4425 6.072508 AGCTAATTCGCAGATTGACAAAGAAA 60.073 34.615 4.63 0.00 35.04 2.52
3831 4426 6.250104 GCTAATTCGCAGATTGACAAAGAAAG 59.750 38.462 0.00 0.00 35.04 2.62
3912 4508 9.914834 AATGAGATTCTTGTAGTCTACTACTCT 57.085 33.333 18.44 13.02 46.74 3.24
3914 4510 9.820725 TGAGATTCTTGTAGTCTACTACTCTAC 57.179 37.037 18.44 9.01 46.74 2.59
3932 4528 5.780793 ACTCTACTTTACAATGGGTCTCACT 59.219 40.000 0.00 0.00 0.00 3.41
3949 4547 7.084486 GGTCTCACTTGAAAACACAATATTCC 58.916 38.462 0.00 0.00 0.00 3.01
4081 4679 0.388649 AAGAGTGCGAGCAGGTAACG 60.389 55.000 0.00 0.00 46.39 3.18
4083 4681 2.048503 GTGCGAGCAGGTAACGGT 60.049 61.111 0.00 0.00 46.39 4.83
4099 4697 6.649557 AGGTAACGGTTTTCAGTTCATTCTAG 59.350 38.462 0.00 0.00 46.39 2.43
4137 4738 5.630680 CCACACTTTTCTGATTGCATAACAC 59.369 40.000 0.00 0.00 0.00 3.32
4150 4751 4.385825 TGCATAACACGGAAGTTTCTTCT 58.614 39.130 8.96 0.00 46.40 2.85
4156 4760 3.637229 ACACGGAAGTTTCTTCTCAGAGA 59.363 43.478 0.00 0.00 46.40 3.10
4168 4772 2.451490 TCTCAGAGAGAAGCCACGATT 58.549 47.619 0.00 0.00 35.59 3.34
4297 4901 0.472471 TGAAGACGGCCAAGAACCTT 59.528 50.000 2.24 0.00 0.00 3.50
4301 4905 0.034896 GACGGCCAAGAACCTTCTGA 59.965 55.000 2.24 0.00 37.65 3.27
4342 4946 2.119611 TCCGAGACCAAGCTCCCA 59.880 61.111 0.00 0.00 0.00 4.37
4505 5109 6.524101 ACTCTGGAGTCTGTATCTTTCTTC 57.476 41.667 0.00 0.00 36.92 2.87
4546 5150 4.021456 TCCCTGTATACGGCAATGTATCTG 60.021 45.833 6.15 0.00 36.48 2.90
4553 5163 8.198778 TGTATACGGCAATGTATCTGTCTAAAA 58.801 33.333 0.00 0.00 36.48 1.52
4583 5197 8.819643 AACAAGTCGAGCTTAATTATCCTATC 57.180 34.615 0.00 0.00 35.27 2.08
4589 5203 6.051717 CGAGCTTAATTATCCTATCCCCATG 58.948 44.000 0.00 0.00 0.00 3.66
4600 5214 1.533187 ATCCCCATGAGGCCATTACA 58.467 50.000 5.01 0.00 0.00 2.41
4607 5221 3.956199 CCATGAGGCCATTACACTCATTT 59.044 43.478 5.01 0.00 46.64 2.32
4669 5285 8.599055 ACAGATTATACAGTGCTACATGAATG 57.401 34.615 0.00 0.00 0.00 2.67
4670 5286 7.172190 ACAGATTATACAGTGCTACATGAATGC 59.828 37.037 0.00 0.74 0.00 3.56
4671 5287 7.172019 CAGATTATACAGTGCTACATGAATGCA 59.828 37.037 0.00 3.70 0.00 3.96
4672 5288 7.881751 AGATTATACAGTGCTACATGAATGCAT 59.118 33.333 0.00 0.00 39.00 3.96
4673 5289 7.806409 TTATACAGTGCTACATGAATGCATT 57.194 32.000 12.83 12.83 39.00 3.56
4674 5290 4.627611 ACAGTGCTACATGAATGCATTC 57.372 40.909 28.83 28.83 39.00 2.67
4675 5291 3.064408 ACAGTGCTACATGAATGCATTCG 59.936 43.478 29.23 20.25 39.62 3.34
4676 5292 3.064408 CAGTGCTACATGAATGCATTCGT 59.936 43.478 29.23 27.32 39.62 3.85
4743 5359 2.088950 ATGCTGACAAATTTGCTGCC 57.911 45.000 25.86 13.75 32.60 4.85
4745 5361 0.671472 GCTGACAAATTTGCTGCCCC 60.671 55.000 18.12 1.95 0.00 5.80
4746 5362 0.680618 CTGACAAATTTGCTGCCCCA 59.319 50.000 18.12 6.07 0.00 4.96
4749 5365 2.106166 TGACAAATTTGCTGCCCCATTT 59.894 40.909 18.12 0.00 0.00 2.32
4750 5366 3.326006 TGACAAATTTGCTGCCCCATTTA 59.674 39.130 18.12 0.00 0.00 1.40
4751 5367 4.019501 TGACAAATTTGCTGCCCCATTTAT 60.020 37.500 18.12 0.00 0.00 1.40
4752 5368 4.516323 ACAAATTTGCTGCCCCATTTATC 58.484 39.130 18.12 0.00 0.00 1.75
4753 5369 4.019501 ACAAATTTGCTGCCCCATTTATCA 60.020 37.500 18.12 0.00 0.00 2.15
4754 5370 3.825143 ATTTGCTGCCCCATTTATCAC 57.175 42.857 0.00 0.00 0.00 3.06
4755 5371 1.484038 TTGCTGCCCCATTTATCACC 58.516 50.000 0.00 0.00 0.00 4.02
4756 5372 0.334335 TGCTGCCCCATTTATCACCA 59.666 50.000 0.00 0.00 0.00 4.17
4757 5373 1.035139 GCTGCCCCATTTATCACCAG 58.965 55.000 0.00 0.00 0.00 4.00
4758 5374 1.410083 GCTGCCCCATTTATCACCAGA 60.410 52.381 0.00 0.00 0.00 3.86
4759 5375 2.949963 GCTGCCCCATTTATCACCAGAA 60.950 50.000 0.00 0.00 0.00 3.02
4761 5377 3.364549 TGCCCCATTTATCACCAGAAAG 58.635 45.455 0.00 0.00 0.00 2.62
4762 5378 2.101415 GCCCCATTTATCACCAGAAAGC 59.899 50.000 0.00 0.00 0.00 3.51
4763 5379 3.364549 CCCCATTTATCACCAGAAAGCA 58.635 45.455 0.00 0.00 0.00 3.91
4764 5380 3.382546 CCCCATTTATCACCAGAAAGCAG 59.617 47.826 0.00 0.00 0.00 4.24
4765 5381 4.272489 CCCATTTATCACCAGAAAGCAGA 58.728 43.478 0.00 0.00 0.00 4.26
4766 5382 4.337555 CCCATTTATCACCAGAAAGCAGAG 59.662 45.833 0.00 0.00 0.00 3.35
4767 5383 4.946157 CCATTTATCACCAGAAAGCAGAGT 59.054 41.667 0.00 0.00 0.00 3.24
4768 5384 5.163683 CCATTTATCACCAGAAAGCAGAGTG 60.164 44.000 0.00 0.00 0.00 3.51
4769 5385 1.818642 ATCACCAGAAAGCAGAGTGC 58.181 50.000 0.00 0.00 45.46 4.40
4783 5399 0.681733 GAGTGCACCTGTCTCCTCAA 59.318 55.000 14.63 0.00 0.00 3.02
4790 5406 2.093764 CACCTGTCTCCTCAACCTCATC 60.094 54.545 0.00 0.00 0.00 2.92
4800 5416 2.237143 CTCAACCTCATCCAGCCACTTA 59.763 50.000 0.00 0.00 0.00 2.24
4808 5424 5.023533 TCATCCAGCCACTTAACTGTATC 57.976 43.478 0.00 0.00 31.76 2.24
4835 5451 6.370442 ACATTGTTAAATCTACTTACAGCGCA 59.630 34.615 11.47 0.00 0.00 6.09
4843 5459 7.588143 AATCTACTTACAGCGCATTCATATC 57.412 36.000 11.47 0.00 0.00 1.63
4848 5464 5.936372 ACTTACAGCGCATTCATATCATCAT 59.064 36.000 11.47 0.00 0.00 2.45
4854 5470 4.598062 CGCATTCATATCATCATCATGCC 58.402 43.478 0.00 0.00 33.47 4.40
4859 5475 3.625764 TCATATCATCATCATGCCATGCG 59.374 43.478 0.00 0.00 0.00 4.73
4866 5509 1.024271 ATCATGCCATGCGGTGTAAC 58.976 50.000 0.00 0.00 33.28 2.50
4891 5534 1.069771 GCGATTTTCGTCCGGTTTTCA 60.070 47.619 0.00 0.00 42.81 2.69
4902 5545 5.990996 TCGTCCGGTTTTCAGTTAATTAACT 59.009 36.000 22.49 22.49 46.76 2.24
4940 5583 0.237235 GTCAACGCGATGGAGCAAAA 59.763 50.000 15.93 0.00 36.85 2.44
4946 5589 2.550606 ACGCGATGGAGCAAAACTTTTA 59.449 40.909 15.93 0.00 36.85 1.52
4947 5590 2.908626 CGCGATGGAGCAAAACTTTTAC 59.091 45.455 0.00 0.00 36.85 2.01
4948 5591 3.242518 GCGATGGAGCAAAACTTTTACC 58.757 45.455 0.00 0.00 37.05 2.85
4950 5593 4.723248 CGATGGAGCAAAACTTTTACCTC 58.277 43.478 0.00 5.91 0.00 3.85
4975 5640 5.122519 TCCTGCGTGATCAAAGCAATTATA 58.877 37.500 22.30 8.35 40.63 0.98
4976 5641 5.764686 TCCTGCGTGATCAAAGCAATTATAT 59.235 36.000 22.30 0.00 40.63 0.86
4978 5643 6.000891 TGCGTGATCAAAGCAATTATATCC 57.999 37.500 20.60 0.00 38.01 2.59
4979 5644 5.764686 TGCGTGATCAAAGCAATTATATCCT 59.235 36.000 20.60 0.00 38.01 3.24
4980 5645 6.082338 GCGTGATCAAAGCAATTATATCCTG 58.918 40.000 16.72 0.00 0.00 3.86
4981 5646 6.082338 CGTGATCAAAGCAATTATATCCTGC 58.918 40.000 0.00 0.00 36.29 4.85
4983 5648 7.082602 GTGATCAAAGCAATTATATCCTGCTG 58.917 38.462 0.00 0.00 45.50 4.41
4986 5651 8.696043 ATCAAAGCAATTATATCCTGCTGTTA 57.304 30.769 6.82 0.00 45.50 2.41
4987 5652 7.930217 TCAAAGCAATTATATCCTGCTGTTAC 58.070 34.615 6.82 0.00 45.50 2.50
4988 5653 7.775093 TCAAAGCAATTATATCCTGCTGTTACT 59.225 33.333 6.82 0.00 45.50 2.24
4989 5654 7.736447 AAGCAATTATATCCTGCTGTTACTC 57.264 36.000 6.82 0.00 45.50 2.59
4999 5664 3.341823 CTGCTGTTACTCCTGAGCAAAT 58.658 45.455 0.00 0.00 40.80 2.32
5009 5674 4.082571 ACTCCTGAGCAAATGTGTTAATGC 60.083 41.667 0.00 0.00 39.06 3.56
5032 5697 4.378774 CTCTGATACTCCTTGATTGCCTG 58.621 47.826 0.00 0.00 0.00 4.85
5033 5698 3.776969 TCTGATACTCCTTGATTGCCTGT 59.223 43.478 0.00 0.00 0.00 4.00
5034 5699 4.225942 TCTGATACTCCTTGATTGCCTGTT 59.774 41.667 0.00 0.00 0.00 3.16
5036 5701 2.664402 ACTCCTTGATTGCCTGTTGT 57.336 45.000 0.00 0.00 0.00 3.32
5037 5702 3.788227 ACTCCTTGATTGCCTGTTGTA 57.212 42.857 0.00 0.00 0.00 2.41
5038 5703 3.412386 ACTCCTTGATTGCCTGTTGTAC 58.588 45.455 0.00 0.00 0.00 2.90
5039 5704 2.416547 CTCCTTGATTGCCTGTTGTACG 59.583 50.000 0.00 0.00 0.00 3.67
5040 5705 2.037902 TCCTTGATTGCCTGTTGTACGA 59.962 45.455 0.00 0.00 0.00 3.43
5041 5706 2.811431 CCTTGATTGCCTGTTGTACGAA 59.189 45.455 0.00 0.00 0.00 3.85
5042 5707 3.440173 CCTTGATTGCCTGTTGTACGAAT 59.560 43.478 0.00 0.00 0.00 3.34
5049 5724 1.732259 CCTGTTGTACGAATGTGCTCC 59.268 52.381 0.00 0.00 0.00 4.70
5168 5856 0.752054 ACATTTGCACACCACCCTTG 59.248 50.000 0.00 0.00 0.00 3.61
5170 5858 1.619827 CATTTGCACACCACCCTTGAT 59.380 47.619 0.00 0.00 0.00 2.57
5203 5906 1.395826 CCCAGCCTCGTCCTCCTTAG 61.396 65.000 0.00 0.00 0.00 2.18
5213 5916 3.462579 TCGTCCTCCTTAGTCTAATCCCT 59.537 47.826 0.00 0.00 0.00 4.20
5256 5959 4.954118 TCCACGTGGGGAGCCAGT 62.954 66.667 33.40 0.00 37.22 4.00
5258 5961 3.625897 CACGTGGGGAGCCAGTCA 61.626 66.667 7.95 0.00 0.00 3.41
5259 5962 3.314331 ACGTGGGGAGCCAGTCAG 61.314 66.667 0.00 0.00 0.00 3.51
5260 5963 3.314331 CGTGGGGAGCCAGTCAGT 61.314 66.667 0.00 0.00 0.00 3.41
5261 5964 2.348998 GTGGGGAGCCAGTCAGTG 59.651 66.667 0.00 0.00 0.00 3.66
5262 5965 2.122413 TGGGGAGCCAGTCAGTGT 60.122 61.111 0.00 0.00 0.00 3.55
5277 5997 3.311110 TGTGCAGGGACGGTCTCC 61.311 66.667 3.95 5.99 38.55 3.71
5310 6030 1.549170 GATTATATCGCCGTCCTGGGT 59.451 52.381 0.00 0.00 38.63 4.51
5311 6031 1.416243 TTATATCGCCGTCCTGGGTT 58.584 50.000 0.00 0.00 38.63 4.11
5312 6032 0.963962 TATATCGCCGTCCTGGGTTC 59.036 55.000 0.00 0.00 38.63 3.62
5313 6033 1.755393 ATATCGCCGTCCTGGGTTCC 61.755 60.000 0.00 0.00 38.63 3.62
5314 6034 2.866523 TATCGCCGTCCTGGGTTCCT 62.867 60.000 0.00 0.00 38.63 3.36
5315 6035 4.760047 CGCCGTCCTGGGTTCCTG 62.760 72.222 0.00 0.00 38.63 3.86
5316 6036 4.410400 GCCGTCCTGGGTTCCTGG 62.410 72.222 3.78 3.78 42.93 4.45
5360 6080 1.004679 GGGTTCGCCGGTTAACTGA 60.005 57.895 16.27 1.51 38.45 3.41
5418 6139 1.446272 CTCTCGGAACCAACGGCTC 60.446 63.158 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.833650 TGAATGTTTACCCCGAGTGAGTA 59.166 43.478 0.00 0.00 0.00 2.59
70 71 0.592247 GCCTTTGAAGTGCGTGTGTG 60.592 55.000 0.00 0.00 0.00 3.82
71 72 1.724582 GGCCTTTGAAGTGCGTGTGT 61.725 55.000 0.00 0.00 0.00 3.72
77 78 1.279271 TCTAGGAGGCCTTTGAAGTGC 59.721 52.381 6.77 0.00 34.61 4.40
86 88 0.343372 TGGTTGGATCTAGGAGGCCT 59.657 55.000 3.86 3.86 37.71 5.19
88 90 2.548920 CGATTGGTTGGATCTAGGAGGC 60.549 54.545 0.00 0.00 0.00 4.70
116 118 3.881688 GTCAGGTATGCTTTGCTCATCAT 59.118 43.478 0.00 0.00 0.00 2.45
117 119 3.273434 GTCAGGTATGCTTTGCTCATCA 58.727 45.455 0.00 0.00 0.00 3.07
118 120 3.064545 GTGTCAGGTATGCTTTGCTCATC 59.935 47.826 0.00 0.00 0.00 2.92
119 121 3.012518 GTGTCAGGTATGCTTTGCTCAT 58.987 45.455 0.00 0.00 0.00 2.90
120 122 2.426522 GTGTCAGGTATGCTTTGCTCA 58.573 47.619 0.00 0.00 0.00 4.26
121 123 1.394917 CGTGTCAGGTATGCTTTGCTC 59.605 52.381 0.00 0.00 0.00 4.26
122 124 1.442769 CGTGTCAGGTATGCTTTGCT 58.557 50.000 0.00 0.00 0.00 3.91
123 125 0.179189 GCGTGTCAGGTATGCTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
124 126 0.447801 GGCGTGTCAGGTATGCTTTG 59.552 55.000 0.00 0.00 0.00 2.77
125 127 1.019278 CGGCGTGTCAGGTATGCTTT 61.019 55.000 0.00 0.00 0.00 3.51
175 177 0.827368 GGGAGCCTGATTTCGAGTCT 59.173 55.000 2.24 0.00 0.00 3.24
202 204 1.518056 TTCTGAAGCCTGCCTTTGCG 61.518 55.000 0.00 0.00 41.78 4.85
268 270 2.115291 GGAGCCGTTTGATCAGGGC 61.115 63.158 20.71 20.71 46.35 5.19
289 291 2.124695 GGGGTTCATCAGGCGACC 60.125 66.667 0.00 0.00 0.00 4.79
313 315 2.616458 GGGTGCCTGGAGGAATGGT 61.616 63.158 0.00 0.00 37.39 3.55
316 318 0.625683 AGATGGGTGCCTGGAGGAAT 60.626 55.000 0.00 0.00 37.39 3.01
333 335 6.545666 TCCTTTTGCTTGTGATTTTGTAGAGA 59.454 34.615 0.00 0.00 0.00 3.10
342 353 7.500141 AGTAATTGTTCCTTTTGCTTGTGATT 58.500 30.769 0.00 0.00 0.00 2.57
344 355 6.463995 AGTAATTGTTCCTTTTGCTTGTGA 57.536 33.333 0.00 0.00 0.00 3.58
369 383 7.002879 ACAGAGTACTACTCCACTTGTTTAGA 58.997 38.462 11.94 0.00 46.18 2.10
380 394 7.147932 CCCTTTAGGTTTACAGAGTACTACTCC 60.148 44.444 11.94 0.00 46.18 3.85
381 395 7.147932 CCCCTTTAGGTTTACAGAGTACTACTC 60.148 44.444 8.02 8.02 45.38 2.59
690 710 4.767255 GTGGAGGAGGTGCTGGCG 62.767 72.222 0.00 0.00 0.00 5.69
691 711 4.416738 GGTGGAGGAGGTGCTGGC 62.417 72.222 0.00 0.00 0.00 4.85
692 712 2.608988 AGGTGGAGGAGGTGCTGG 60.609 66.667 0.00 0.00 0.00 4.85
693 713 2.664081 GGAGGTGGAGGAGGTGCTG 61.664 68.421 0.00 0.00 0.00 4.41
694 714 2.284995 GGAGGTGGAGGAGGTGCT 60.285 66.667 0.00 0.00 0.00 4.40
695 715 1.566298 ATTGGAGGTGGAGGAGGTGC 61.566 60.000 0.00 0.00 0.00 5.01
696 716 0.254178 CATTGGAGGTGGAGGAGGTG 59.746 60.000 0.00 0.00 0.00 4.00
697 717 0.119155 TCATTGGAGGTGGAGGAGGT 59.881 55.000 0.00 0.00 0.00 3.85
698 718 0.543749 GTCATTGGAGGTGGAGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
699 719 0.176680 CGTCATTGGAGGTGGAGGAG 59.823 60.000 0.00 0.00 0.00 3.69
700 720 1.264749 CCGTCATTGGAGGTGGAGGA 61.265 60.000 0.00 0.00 0.00 3.71
701 721 1.221840 CCGTCATTGGAGGTGGAGG 59.778 63.158 0.00 0.00 0.00 4.30
702 722 1.450312 GCCGTCATTGGAGGTGGAG 60.450 63.158 1.45 0.00 0.00 3.86
703 723 2.668632 GCCGTCATTGGAGGTGGA 59.331 61.111 1.45 0.00 0.00 4.02
704 724 2.819595 CGCCGTCATTGGAGGTGG 60.820 66.667 4.62 0.00 32.29 4.61
705 725 2.819595 CCGCCGTCATTGGAGGTG 60.820 66.667 0.00 5.32 43.38 4.00
757 779 1.455959 CCGTGGGGTTTGGTGGAAA 60.456 57.895 0.00 0.00 0.00 3.13
758 780 2.196229 CCGTGGGGTTTGGTGGAA 59.804 61.111 0.00 0.00 0.00 3.53
759 781 3.892162 CCCGTGGGGTTTGGTGGA 61.892 66.667 0.00 0.00 38.25 4.02
791 872 2.492090 CCACGAAGAGAGAGGCGG 59.508 66.667 0.00 0.00 0.00 6.13
793 874 1.038130 TAGCCCACGAAGAGAGAGGC 61.038 60.000 0.00 0.00 40.79 4.70
805 889 2.751837 GCCCAACTGCTAGCCCAC 60.752 66.667 13.29 0.00 0.00 4.61
832 916 1.079127 CGAATCAACTGGGCCTCGT 60.079 57.895 4.53 0.00 0.00 4.18
844 928 1.815003 CAGCCCACGATGCGAATCA 60.815 57.895 3.80 0.00 0.00 2.57
941 1040 2.776913 CCTTCCTCTCCGCTCCGTC 61.777 68.421 0.00 0.00 0.00 4.79
986 1088 2.525381 CCATCTCCCCTCCCCTCG 60.525 72.222 0.00 0.00 0.00 4.63
987 1089 2.851588 GCCATCTCCCCTCCCCTC 60.852 72.222 0.00 0.00 0.00 4.30
988 1090 4.523282 GGCCATCTCCCCTCCCCT 62.523 72.222 0.00 0.00 0.00 4.79
991 1093 4.880426 TCCGGCCATCTCCCCTCC 62.880 72.222 2.24 0.00 0.00 4.30
992 1094 3.237741 CTCCGGCCATCTCCCCTC 61.238 72.222 2.24 0.00 0.00 4.30
993 1095 4.888325 CCTCCGGCCATCTCCCCT 62.888 72.222 2.24 0.00 0.00 4.79
994 1096 4.880426 TCCTCCGGCCATCTCCCC 62.880 72.222 2.24 0.00 0.00 4.81
995 1097 3.237741 CTCCTCCGGCCATCTCCC 61.238 72.222 2.24 0.00 0.00 4.30
1011 1113 1.156322 TCCTCCTCCACCCTTCCTCT 61.156 60.000 0.00 0.00 0.00 3.69
1173 1275 3.583276 ATTTCGCGGCTCGTGGTGA 62.583 57.895 6.13 0.00 37.97 4.02
1174 1276 3.083600 GATTTCGCGGCTCGTGGTG 62.084 63.158 6.13 0.00 37.97 4.17
1192 1294 2.935201 GACAGGAGCAGCATCAAAGTAG 59.065 50.000 0.00 0.00 0.00 2.57
1200 1302 3.005539 ACCGGACAGGAGCAGCAT 61.006 61.111 9.46 0.00 45.00 3.79
1213 1315 1.134640 TCCGAACCATACAATCACCGG 60.135 52.381 0.00 0.00 37.29 5.28
1214 1316 1.931172 GTCCGAACCATACAATCACCG 59.069 52.381 0.00 0.00 0.00 4.94
1215 1317 1.931172 CGTCCGAACCATACAATCACC 59.069 52.381 0.00 0.00 0.00 4.02
1216 1318 1.931172 CCGTCCGAACCATACAATCAC 59.069 52.381 0.00 0.00 0.00 3.06
1217 1319 1.134640 CCCGTCCGAACCATACAATCA 60.135 52.381 0.00 0.00 0.00 2.57
1219 1321 0.906775 ACCCGTCCGAACCATACAAT 59.093 50.000 0.00 0.00 0.00 2.71
1220 1322 0.247185 GACCCGTCCGAACCATACAA 59.753 55.000 0.00 0.00 0.00 2.41
1221 1323 1.606885 GGACCCGTCCGAACCATACA 61.607 60.000 0.00 0.00 40.36 2.29
1223 1325 3.619938 GGACCCGTCCGAACCATA 58.380 61.111 0.00 0.00 40.36 2.74
1232 1334 2.266055 CCAGCAGAAGGACCCGTC 59.734 66.667 0.00 0.00 0.00 4.79
1233 1335 3.322466 CCCAGCAGAAGGACCCGT 61.322 66.667 0.00 0.00 0.00 5.28
1234 1336 4.785453 GCCCAGCAGAAGGACCCG 62.785 72.222 0.00 0.00 0.00 5.28
1235 1337 3.650950 TGCCCAGCAGAAGGACCC 61.651 66.667 0.00 0.00 33.32 4.46
1236 1338 2.360475 GTGCCCAGCAGAAGGACC 60.360 66.667 0.00 0.00 40.08 4.46
1237 1339 2.360475 GGTGCCCAGCAGAAGGAC 60.360 66.667 0.00 0.00 40.08 3.85
1238 1340 2.156098 AAGGTGCCCAGCAGAAGGA 61.156 57.895 0.00 0.00 40.08 3.36
1239 1341 1.975407 CAAGGTGCCCAGCAGAAGG 60.975 63.158 0.00 0.00 40.08 3.46
1240 1342 1.228367 ACAAGGTGCCCAGCAGAAG 60.228 57.895 0.00 0.00 40.08 2.85
1241 1343 1.529010 CACAAGGTGCCCAGCAGAA 60.529 57.895 0.00 0.00 40.08 3.02
1242 1344 2.113774 CACAAGGTGCCCAGCAGA 59.886 61.111 0.00 0.00 40.08 4.26
1243 1345 2.987547 CCACAAGGTGCCCAGCAG 60.988 66.667 0.00 0.00 40.08 4.24
1245 1347 4.982701 AGCCACAAGGTGCCCAGC 62.983 66.667 0.00 0.00 37.19 4.85
1246 1348 2.203538 AAGCCACAAGGTGCCCAG 60.204 61.111 0.00 0.00 37.19 4.45
1247 1349 2.521465 CAAGCCACAAGGTGCCCA 60.521 61.111 0.00 0.00 37.19 5.36
1252 1354 1.303643 GCTAGGCAAGCCACAAGGT 60.304 57.895 14.40 0.00 46.25 3.50
1276 1378 5.294306 TCTGAACATTCGTGCCTAAATCATC 59.706 40.000 0.00 0.00 0.00 2.92
1290 1392 3.703001 TCCCCTGAAGTCTGAACATTC 57.297 47.619 0.00 0.00 0.00 2.67
1293 1395 2.978978 TCAATCCCCTGAAGTCTGAACA 59.021 45.455 0.00 0.00 0.00 3.18
1294 1396 3.703001 TCAATCCCCTGAAGTCTGAAC 57.297 47.619 0.00 0.00 0.00 3.18
1297 1399 4.226427 TCAATCAATCCCCTGAAGTCTG 57.774 45.455 0.00 0.00 0.00 3.51
1299 1401 4.337555 CACATCAATCAATCCCCTGAAGTC 59.662 45.833 0.00 0.00 0.00 3.01
1300 1402 4.018141 TCACATCAATCAATCCCCTGAAGT 60.018 41.667 0.00 0.00 0.00 3.01
1301 1403 4.337555 GTCACATCAATCAATCCCCTGAAG 59.662 45.833 0.00 0.00 0.00 3.02
1304 1623 3.630769 CAGTCACATCAATCAATCCCCTG 59.369 47.826 0.00 0.00 0.00 4.45
1310 1629 3.337358 TCACGCAGTCACATCAATCAAT 58.663 40.909 0.00 0.00 41.61 2.57
1314 1633 1.730501 CCTCACGCAGTCACATCAAT 58.269 50.000 0.00 0.00 41.61 2.57
1320 1639 2.433318 GGAGCCTCACGCAGTCAC 60.433 66.667 0.00 0.00 41.61 3.67
1324 1643 1.080093 TTAACGGAGCCTCACGCAG 60.080 57.895 0.00 0.00 41.38 5.18
1325 1644 1.373748 GTTAACGGAGCCTCACGCA 60.374 57.895 0.00 0.00 41.38 5.24
1326 1645 2.442188 CGTTAACGGAGCCTCACGC 61.442 63.158 20.24 0.00 35.37 5.34
1328 1647 1.623973 GCACGTTAACGGAGCCTCAC 61.624 60.000 29.81 7.80 44.95 3.51
1329 1648 1.373748 GCACGTTAACGGAGCCTCA 60.374 57.895 29.81 0.00 44.95 3.86
1330 1649 0.171903 TAGCACGTTAACGGAGCCTC 59.828 55.000 30.88 15.62 44.95 4.70
1331 1650 0.172803 CTAGCACGTTAACGGAGCCT 59.827 55.000 30.88 23.28 44.95 4.58
1332 1651 0.171903 TCTAGCACGTTAACGGAGCC 59.828 55.000 30.88 19.34 44.95 4.70
1333 1652 1.852895 CATCTAGCACGTTAACGGAGC 59.147 52.381 29.81 29.28 44.95 4.70
1334 1653 3.146618 ACATCTAGCACGTTAACGGAG 57.853 47.619 29.81 22.23 44.95 4.63
1335 1654 3.247442 CAACATCTAGCACGTTAACGGA 58.753 45.455 29.81 17.83 44.95 4.69
1338 1657 5.840940 AGAACAACATCTAGCACGTTAAC 57.159 39.130 0.00 0.00 0.00 2.01
1340 1659 6.145534 CAGAAAGAACAACATCTAGCACGTTA 59.854 38.462 0.00 0.00 0.00 3.18
1350 1669 3.180387 GCAAACGCAGAAAGAACAACATC 59.820 43.478 0.00 0.00 0.00 3.06
1359 1678 2.158449 CAGTCCTAGCAAACGCAGAAAG 59.842 50.000 0.00 0.00 0.00 2.62
1361 1680 1.608025 CCAGTCCTAGCAAACGCAGAA 60.608 52.381 0.00 0.00 0.00 3.02
1366 1685 0.535335 TAGCCCAGTCCTAGCAAACG 59.465 55.000 0.00 0.00 0.00 3.60
1371 1690 2.043227 ACATTCTAGCCCAGTCCTAGC 58.957 52.381 0.00 0.00 33.83 3.42
1374 1693 3.034635 CACTACATTCTAGCCCAGTCCT 58.965 50.000 0.00 0.00 0.00 3.85
1389 1709 6.539173 ACCAAATTACAGACCAATCACTACA 58.461 36.000 0.00 0.00 0.00 2.74
1390 1710 7.040686 ACAACCAAATTACAGACCAATCACTAC 60.041 37.037 0.00 0.00 0.00 2.73
1393 1713 6.084326 ACAACCAAATTACAGACCAATCAC 57.916 37.500 0.00 0.00 0.00 3.06
1394 1714 6.511416 CAACAACCAAATTACAGACCAATCA 58.489 36.000 0.00 0.00 0.00 2.57
1395 1715 5.405269 GCAACAACCAAATTACAGACCAATC 59.595 40.000 0.00 0.00 0.00 2.67
1396 1716 5.296748 GCAACAACCAAATTACAGACCAAT 58.703 37.500 0.00 0.00 0.00 3.16
1397 1717 4.442192 GGCAACAACCAAATTACAGACCAA 60.442 41.667 0.00 0.00 0.00 3.67
1456 1776 0.180406 ACAGAGCACACGAAAACCCT 59.820 50.000 0.00 0.00 0.00 4.34
1460 1780 0.179094 ACGGACAGAGCACACGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
1473 1793 2.224670 ACAGAGGCCATTTAAACGGACA 60.225 45.455 9.20 0.00 29.93 4.02
1474 1794 2.433436 ACAGAGGCCATTTAAACGGAC 58.567 47.619 5.01 0.00 0.00 4.79
1475 1795 2.871096 ACAGAGGCCATTTAAACGGA 57.129 45.000 5.01 0.00 0.00 4.69
1476 1796 3.934457 AAACAGAGGCCATTTAAACGG 57.066 42.857 5.01 0.00 0.00 4.44
1477 1797 4.865776 TCAAAACAGAGGCCATTTAAACG 58.134 39.130 5.01 0.00 0.00 3.60
1503 1823 6.586082 CCAACATTTTAACTACAGCACCATTC 59.414 38.462 0.00 0.00 0.00 2.67
1508 1828 5.699097 TCCCAACATTTTAACTACAGCAC 57.301 39.130 0.00 0.00 0.00 4.40
1528 1848 2.517166 GCCCCGCCTGAAGAATCC 60.517 66.667 0.00 0.00 0.00 3.01
1530 1850 2.273449 CAGCCCCGCCTGAAGAAT 59.727 61.111 0.00 0.00 34.77 2.40
1531 1851 4.722700 GCAGCCCCGCCTGAAGAA 62.723 66.667 0.00 0.00 34.77 2.52
1543 1863 4.012895 CACGACACAACCGCAGCC 62.013 66.667 0.00 0.00 0.00 4.85
1544 1864 4.666532 GCACGACACAACCGCAGC 62.667 66.667 0.00 0.00 0.00 5.25
1545 1865 2.116736 AATGCACGACACAACCGCAG 62.117 55.000 0.00 0.00 35.79 5.18
1546 1866 1.719725 AAATGCACGACACAACCGCA 61.720 50.000 0.00 0.00 36.95 5.69
1547 1867 1.008995 AAATGCACGACACAACCGC 60.009 52.632 0.00 0.00 0.00 5.68
1548 1868 0.028770 ACAAATGCACGACACAACCG 59.971 50.000 0.00 0.00 0.00 4.44
1549 1869 1.476074 CACAAATGCACGACACAACC 58.524 50.000 0.00 0.00 0.00 3.77
1575 1895 5.894298 TCATACTATTGAGCCAGTTCCAT 57.106 39.130 0.00 0.00 0.00 3.41
1584 1904 6.368791 TCACAGTTGTGTTCATACTATTGAGC 59.631 38.462 11.66 0.00 45.76 4.26
1589 1909 5.639506 GTGCTCACAGTTGTGTTCATACTAT 59.360 40.000 11.66 0.00 45.76 2.12
1641 1961 0.804989 CAGTGCCCTTTTCGATCACC 59.195 55.000 0.00 0.00 0.00 4.02
1643 1963 0.250684 TGCAGTGCCCTTTTCGATCA 60.251 50.000 13.72 0.00 0.00 2.92
1644 1964 0.169009 GTGCAGTGCCCTTTTCGATC 59.831 55.000 13.72 0.00 0.00 3.69
1646 1966 1.148273 AGTGCAGTGCCCTTTTCGA 59.852 52.632 13.72 0.00 0.00 3.71
1647 1967 1.283793 CAGTGCAGTGCCCTTTTCG 59.716 57.895 13.72 0.00 0.00 3.46
1648 1968 0.823356 TCCAGTGCAGTGCCCTTTTC 60.823 55.000 16.47 0.00 0.00 2.29
1676 1996 2.825532 ACAAAAAGTATCGGCCAGCATT 59.174 40.909 2.24 0.00 0.00 3.56
1677 1997 2.446435 ACAAAAAGTATCGGCCAGCAT 58.554 42.857 2.24 0.00 0.00 3.79
1678 1998 1.904287 ACAAAAAGTATCGGCCAGCA 58.096 45.000 2.24 0.00 0.00 4.41
1683 2003 5.562113 GCCATACCATACAAAAAGTATCGGC 60.562 44.000 0.00 0.00 41.47 5.54
1684 2004 5.048991 GGCCATACCATACAAAAAGTATCGG 60.049 44.000 0.00 0.00 41.47 4.18
1686 2006 8.863872 ATAGGCCATACCATACAAAAAGTATC 57.136 34.615 5.01 0.00 41.47 2.24
1690 2010 7.581213 TCAATAGGCCATACCATACAAAAAG 57.419 36.000 5.01 0.00 43.14 2.27
1691 2011 7.962995 TTCAATAGGCCATACCATACAAAAA 57.037 32.000 5.01 0.00 43.14 1.94
1692 2012 8.546083 AATTCAATAGGCCATACCATACAAAA 57.454 30.769 5.01 0.00 43.14 2.44
1693 2013 8.546083 AAATTCAATAGGCCATACCATACAAA 57.454 30.769 5.01 0.00 43.14 2.83
1694 2014 8.546083 AAAATTCAATAGGCCATACCATACAA 57.454 30.769 5.01 0.00 43.14 2.41
1695 2015 7.040755 CGAAAATTCAATAGGCCATACCATACA 60.041 37.037 5.01 0.00 43.14 2.29
1696 2016 7.040686 ACGAAAATTCAATAGGCCATACCATAC 60.041 37.037 5.01 0.00 43.14 2.39
1697 2017 7.001674 ACGAAAATTCAATAGGCCATACCATA 58.998 34.615 5.01 0.00 43.14 2.74
1698 2018 5.833131 ACGAAAATTCAATAGGCCATACCAT 59.167 36.000 5.01 0.00 43.14 3.55
1699 2019 5.197451 ACGAAAATTCAATAGGCCATACCA 58.803 37.500 5.01 0.00 43.14 3.25
1700 2020 5.767816 ACGAAAATTCAATAGGCCATACC 57.232 39.130 5.01 0.00 39.61 2.73
1701 2021 6.019881 GCAAACGAAAATTCAATAGGCCATAC 60.020 38.462 5.01 0.00 0.00 2.39
1702 2022 6.039616 GCAAACGAAAATTCAATAGGCCATA 58.960 36.000 5.01 0.00 0.00 2.74
1703 2023 4.869861 GCAAACGAAAATTCAATAGGCCAT 59.130 37.500 5.01 0.00 0.00 4.40
1704 2024 4.241681 GCAAACGAAAATTCAATAGGCCA 58.758 39.130 5.01 0.00 0.00 5.36
1706 2026 3.303229 CCGCAAACGAAAATTCAATAGGC 59.697 43.478 0.00 0.00 43.93 3.93
1717 2037 3.172824 GACAAAAGAACCGCAAACGAAA 58.827 40.909 0.00 0.00 43.93 3.46
1719 2039 1.267632 CGACAAAAGAACCGCAAACGA 60.268 47.619 0.00 0.00 43.93 3.85
1721 2041 1.843753 CACGACAAAAGAACCGCAAAC 59.156 47.619 0.00 0.00 0.00 2.93
1724 2044 1.588674 ATCACGACAAAAGAACCGCA 58.411 45.000 0.00 0.00 0.00 5.69
1731 2051 5.193216 CGATGCTCAATATCACGACAAAAG 58.807 41.667 0.00 0.00 0.00 2.27
1732 2052 4.494035 GCGATGCTCAATATCACGACAAAA 60.494 41.667 0.00 0.00 0.00 2.44
1733 2053 3.001228 GCGATGCTCAATATCACGACAAA 59.999 43.478 0.00 0.00 0.00 2.83
1734 2054 2.539688 GCGATGCTCAATATCACGACAA 59.460 45.455 0.00 0.00 0.00 3.18
1735 2055 2.127251 GCGATGCTCAATATCACGACA 58.873 47.619 0.00 0.00 0.00 4.35
1736 2056 1.123217 CGCGATGCTCAATATCACGAC 59.877 52.381 0.00 0.00 33.31 4.34
1737 2057 1.269051 ACGCGATGCTCAATATCACGA 60.269 47.619 15.93 0.00 34.67 4.35
1738 2058 1.123217 GACGCGATGCTCAATATCACG 59.877 52.381 15.93 0.00 36.48 4.35
1740 2060 1.783284 GGACGCGATGCTCAATATCA 58.217 50.000 15.93 0.00 0.00 2.15
1741 2061 0.710567 CGGACGCGATGCTCAATATC 59.289 55.000 15.93 0.00 0.00 1.63
1742 2062 0.032130 ACGGACGCGATGCTCAATAT 59.968 50.000 15.93 0.00 0.00 1.28
1744 2064 1.878522 GACGGACGCGATGCTCAAT 60.879 57.895 15.93 0.00 0.00 2.57
1745 2065 2.506217 GACGGACGCGATGCTCAA 60.506 61.111 15.93 0.00 0.00 3.02
1746 2066 3.275832 TTGACGGACGCGATGCTCA 62.276 57.895 15.93 5.07 0.00 4.26
1747 2067 2.506217 TTGACGGACGCGATGCTC 60.506 61.111 15.93 0.00 0.00 4.26
1748 2068 2.507102 CTTGACGGACGCGATGCT 60.507 61.111 15.93 0.00 0.00 3.79
1749 2069 3.554692 CCTTGACGGACGCGATGC 61.555 66.667 15.93 0.85 33.16 3.91
1750 2070 1.289109 AAACCTTGACGGACGCGATG 61.289 55.000 15.93 3.95 36.31 3.84
1751 2071 1.005394 AAACCTTGACGGACGCGAT 60.005 52.632 15.93 0.00 36.31 4.58
1752 2072 1.952133 CAAACCTTGACGGACGCGA 60.952 57.895 15.93 0.00 36.31 5.87
1753 2073 2.549282 CAAACCTTGACGGACGCG 59.451 61.111 3.53 3.53 36.31 6.01
1754 2074 2.613506 CCCAAACCTTGACGGACGC 61.614 63.158 0.00 0.00 36.31 5.19
1755 2075 2.613506 GCCCAAACCTTGACGGACG 61.614 63.158 0.00 0.00 36.31 4.79
1756 2076 0.893727 ATGCCCAAACCTTGACGGAC 60.894 55.000 0.00 0.00 36.31 4.79
1757 2077 0.608035 GATGCCCAAACCTTGACGGA 60.608 55.000 0.00 0.00 36.31 4.69
1758 2078 0.609131 AGATGCCCAAACCTTGACGG 60.609 55.000 0.00 0.00 39.35 4.79
1759 2079 0.804989 GAGATGCCCAAACCTTGACG 59.195 55.000 0.00 0.00 0.00 4.35
1760 2080 1.177401 GGAGATGCCCAAACCTTGAC 58.823 55.000 0.00 0.00 0.00 3.18
1782 2102 8.378565 ACCTTCAATCTGTATGAGAAAGAAAGA 58.621 33.333 0.00 0.00 33.12 2.52
1787 2107 6.176183 ACCACCTTCAATCTGTATGAGAAAG 58.824 40.000 0.00 0.00 33.12 2.62
1797 2117 3.055530 ACAGCTCTACCACCTTCAATCTG 60.056 47.826 0.00 0.00 0.00 2.90
1826 2146 1.691219 GGGCATCCCTTGGACAAGA 59.309 57.895 13.35 0.00 41.34 3.02
1827 2147 4.344237 GGGCATCCCTTGGACAAG 57.656 61.111 5.09 5.09 41.34 3.16
1838 2195 1.168714 AAAGCTGAACGAAGGGCATC 58.831 50.000 0.00 0.00 0.00 3.91
1847 2204 1.453155 ACCCATGCTAAAGCTGAACG 58.547 50.000 3.26 0.00 42.66 3.95
1863 2220 2.488153 CAGTACAAGCTGCCTAAAACCC 59.512 50.000 0.00 0.00 0.00 4.11
1909 2266 5.659525 TCCAGAGACGGTAATCTCCAATAAA 59.340 40.000 0.00 0.00 45.43 1.40
1910 2267 5.205821 TCCAGAGACGGTAATCTCCAATAA 58.794 41.667 0.00 0.00 45.43 1.40
1925 2282 7.148239 ACGGTTATCATGAAAAATTCCAGAGAC 60.148 37.037 0.00 0.00 0.00 3.36
1943 2300 0.321298 ACTGGTGCCACACGGTTATC 60.321 55.000 0.00 0.00 34.83 1.75
1949 2306 0.802222 CGATCTACTGGTGCCACACG 60.802 60.000 0.00 0.00 34.83 4.49
1958 2315 2.820059 TTGGCATAGCGATCTACTGG 57.180 50.000 0.00 0.00 0.00 4.00
1994 2393 6.267471 ACAAAGAATTTCCTTCTGTTATGGCA 59.733 34.615 0.00 0.00 43.60 4.92
2025 2424 5.451908 ACACGTGTTTGCAGATTAATTCAG 58.548 37.500 17.22 0.00 0.00 3.02
2076 2483 9.994432 CTCATCCAAGATAAGAACAAAACATAC 57.006 33.333 0.00 0.00 0.00 2.39
2083 2490 9.383519 GACATTACTCATCCAAGATAAGAACAA 57.616 33.333 0.00 0.00 0.00 2.83
2090 2497 9.421399 TGTAGAAGACATTACTCATCCAAGATA 57.579 33.333 0.00 0.00 31.20 1.98
2368 2775 9.193806 AGTTAGGCAAACATCAATAATGAAGAT 57.806 29.630 4.26 0.00 40.83 2.40
2375 2813 5.709631 TGCTCAGTTAGGCAAACATCAATAA 59.290 36.000 4.26 0.00 40.83 1.40
2379 2817 3.138884 TGCTCAGTTAGGCAAACATCA 57.861 42.857 4.26 0.00 40.83 3.07
2389 2827 9.950680 TTGAAAAGTAAGAAAATGCTCAGTTAG 57.049 29.630 0.00 0.00 0.00 2.34
2404 2844 6.748132 TGGAGAAAGCCATTTGAAAAGTAAG 58.252 36.000 0.00 0.00 31.66 2.34
2446 2887 8.904834 TCAGCCGGCATTAAGTAATTAAAAATA 58.095 29.630 31.54 0.00 0.00 1.40
2457 2898 3.343941 TTAGTTCAGCCGGCATTAAGT 57.656 42.857 31.54 22.50 0.00 2.24
2458 2899 6.874134 ACTATATTAGTTCAGCCGGCATTAAG 59.126 38.462 31.54 12.80 34.86 1.85
2467 2908 4.625607 AGGCCACTATATTAGTTCAGCC 57.374 45.455 5.01 10.19 42.74 4.85
2487 2928 7.206981 AGATACTGAAACAACATGGACAAAG 57.793 36.000 0.00 0.00 0.00 2.77
2490 2931 8.977412 TCTATAGATACTGAAACAACATGGACA 58.023 33.333 0.00 0.00 0.00 4.02
2508 2949 9.989296 AGTCAAGCACCTAGAATATCTATAGAT 57.011 33.333 18.99 18.99 38.51 1.98
2512 2953 8.484214 TTCAGTCAAGCACCTAGAATATCTAT 57.516 34.615 0.00 0.00 0.00 1.98
2514 2955 6.798427 TTCAGTCAAGCACCTAGAATATCT 57.202 37.500 0.00 0.00 0.00 1.98
2518 2959 7.341805 ACAATATTCAGTCAAGCACCTAGAAT 58.658 34.615 0.00 0.00 0.00 2.40
2570 3012 7.298374 AGGGAAAGAGGAATTCTAACAACTTT 58.702 34.615 5.23 8.15 34.14 2.66
2571 3013 6.853490 AGGGAAAGAGGAATTCTAACAACTT 58.147 36.000 5.23 0.56 34.14 2.66
2572 3014 6.455690 AGGGAAAGAGGAATTCTAACAACT 57.544 37.500 5.23 0.00 34.14 3.16
2610 3077 5.523552 CGACAAGCTGGTCATACATCAATTA 59.476 40.000 21.19 0.00 37.66 1.40
2613 3080 3.056179 TCGACAAGCTGGTCATACATCAA 60.056 43.478 21.19 0.00 37.66 2.57
2618 3085 2.263077 CTGTCGACAAGCTGGTCATAC 58.737 52.381 21.19 17.30 37.66 2.39
2621 3088 1.300931 GCTGTCGACAAGCTGGTCA 60.301 57.895 21.19 5.72 37.66 4.02
2628 3095 3.908382 GCATAAAAAGTGCTGTCGACAAG 59.092 43.478 20.49 14.27 39.45 3.16
2633 3100 2.233355 CACGCATAAAAAGTGCTGTCG 58.767 47.619 0.00 0.00 40.37 4.35
2640 3107 6.920758 TGACAAATAAAGCACGCATAAAAAGT 59.079 30.769 0.00 0.00 0.00 2.66
2642 3109 7.142021 TCTGACAAATAAAGCACGCATAAAAA 58.858 30.769 0.00 0.00 0.00 1.94
2699 3167 2.711009 AGTGGAACATCACCCTGAGAAA 59.289 45.455 0.00 0.00 44.52 2.52
2702 3170 2.567169 TGTAGTGGAACATCACCCTGAG 59.433 50.000 0.00 0.00 44.52 3.35
2724 3192 1.435408 GCTCAGCAGAGAAATCGCCC 61.435 60.000 10.77 0.00 44.98 6.13
2770 3238 1.743958 GGGATATGATGAGCATGCTGC 59.256 52.381 28.27 16.92 45.46 5.25
2773 3241 6.710597 AATAATGGGATATGATGAGCATGC 57.289 37.500 10.51 10.51 37.87 4.06
2774 3242 8.063200 ACAAATAATGGGATATGATGAGCATG 57.937 34.615 0.00 0.00 37.87 4.06
2803 3277 4.458256 TGCTTCCATGTTCCATCCATAT 57.542 40.909 0.00 0.00 0.00 1.78
2815 3289 3.861113 GTGCACACATTATTGCTTCCATG 59.139 43.478 13.17 0.00 39.62 3.66
2816 3290 3.510753 TGTGCACACATTATTGCTTCCAT 59.489 39.130 17.42 0.00 39.62 3.41
2817 3291 2.889678 TGTGCACACATTATTGCTTCCA 59.110 40.909 17.42 0.00 39.62 3.53
2818 3292 3.574284 TGTGCACACATTATTGCTTCC 57.426 42.857 17.42 0.00 39.62 3.46
2888 3362 5.705441 TGACAGCAGGAAATTAACTACAAGG 59.295 40.000 0.00 0.00 0.00 3.61
2890 3364 6.939730 TCATGACAGCAGGAAATTAACTACAA 59.060 34.615 0.00 0.00 30.92 2.41
2897 3371 8.523915 AAACATATCATGACAGCAGGAAATTA 57.476 30.769 0.00 0.00 38.44 1.40
2944 3418 6.842163 ACTCGATAAAGCTAAACCACAAATG 58.158 36.000 0.00 0.00 0.00 2.32
2949 3423 5.119743 ACGAAACTCGATAAAGCTAAACCAC 59.880 40.000 2.59 0.00 43.74 4.16
2958 3432 9.836739 GAGATGATTAAACGAAACTCGATAAAG 57.163 33.333 2.59 0.00 43.74 1.85
2971 3445 9.490663 GTGGATTTTAACTGAGATGATTAAACG 57.509 33.333 0.00 0.00 29.76 3.60
2974 3448 9.958180 TCAGTGGATTTTAACTGAGATGATTAA 57.042 29.630 1.50 0.00 45.97 1.40
3033 3507 9.935682 CATGTACTGTCAATAACATCAATTACC 57.064 33.333 0.00 0.00 37.23 2.85
3076 3550 1.952367 GCTCATGTTTCAGGGTGGAGG 60.952 57.143 0.00 0.00 0.00 4.30
3089 3563 3.079578 CAACTCCATCAACTGCTCATGT 58.920 45.455 0.00 0.00 0.00 3.21
3106 3580 2.428890 CTCTCGCCTAACAGGATCAACT 59.571 50.000 0.00 0.00 37.67 3.16
3145 3619 2.486982 GCGCCATTGCAGATCAATATCT 59.513 45.455 0.00 0.00 43.21 1.98
3217 3691 5.102953 TCACCTTGTATGGATGAAGAAGG 57.897 43.478 0.00 0.00 36.76 3.46
3242 3716 9.751542 ATAATCGACACAAAACTAGGAATAGAG 57.248 33.333 0.00 0.00 0.00 2.43
3291 3767 5.779922 TGGTACAAGAACACAGTATGAGAC 58.220 41.667 0.00 0.00 34.82 3.36
3433 3909 0.469494 AACAGCCCTTTTGCCTTTGG 59.531 50.000 0.00 0.00 0.00 3.28
3434 3910 1.941975 CAAACAGCCCTTTTGCCTTTG 59.058 47.619 0.00 0.00 0.00 2.77
3437 3913 1.410050 CCCAAACAGCCCTTTTGCCT 61.410 55.000 0.00 0.00 33.37 4.75
3440 3916 0.829990 ACACCCAAACAGCCCTTTTG 59.170 50.000 0.00 0.00 34.31 2.44
3441 3917 2.463047 TACACCCAAACAGCCCTTTT 57.537 45.000 0.00 0.00 0.00 2.27
3442 3918 2.463047 TTACACCCAAACAGCCCTTT 57.537 45.000 0.00 0.00 0.00 3.11
3443 3919 2.110011 AGATTACACCCAAACAGCCCTT 59.890 45.455 0.00 0.00 0.00 3.95
3444 3920 1.710809 AGATTACACCCAAACAGCCCT 59.289 47.619 0.00 0.00 0.00 5.19
3445 3921 2.215942 AGATTACACCCAAACAGCCC 57.784 50.000 0.00 0.00 0.00 5.19
3446 3922 3.689649 CACTAGATTACACCCAAACAGCC 59.310 47.826 0.00 0.00 0.00 4.85
3447 3923 3.127030 GCACTAGATTACACCCAAACAGC 59.873 47.826 0.00 0.00 0.00 4.40
3448 3924 4.323417 TGCACTAGATTACACCCAAACAG 58.677 43.478 0.00 0.00 0.00 3.16
3591 4067 5.500645 AGTGAGTAAAGTTGTTTCTTGGC 57.499 39.130 0.00 0.00 0.00 4.52
3640 4116 7.264294 AGAGTCCTTCCAATGAAGTTTCTAT 57.736 36.000 2.03 0.00 45.45 1.98
3752 4345 4.408276 ACTCGTCACCTGGCTATATATGT 58.592 43.478 0.00 0.00 0.00 2.29
3754 4347 4.663334 TGACTCGTCACCTGGCTATATAT 58.337 43.478 0.00 0.00 34.14 0.86
3831 4426 9.220767 CCTCTGAATAAACTGGCTATATAAACC 57.779 37.037 0.00 0.00 0.00 3.27
3907 4503 6.952358 AGTGAGACCCATTGTAAAGTAGAGTA 59.048 38.462 0.00 0.00 0.00 2.59
3908 4504 5.780793 AGTGAGACCCATTGTAAAGTAGAGT 59.219 40.000 0.00 0.00 0.00 3.24
3909 4505 6.287589 AGTGAGACCCATTGTAAAGTAGAG 57.712 41.667 0.00 0.00 0.00 2.43
3910 4506 6.269077 TCAAGTGAGACCCATTGTAAAGTAGA 59.731 38.462 0.00 0.00 0.00 2.59
3911 4507 6.464222 TCAAGTGAGACCCATTGTAAAGTAG 58.536 40.000 0.00 0.00 0.00 2.57
3912 4508 6.428083 TCAAGTGAGACCCATTGTAAAGTA 57.572 37.500 0.00 0.00 0.00 2.24
3913 4509 5.304686 TCAAGTGAGACCCATTGTAAAGT 57.695 39.130 0.00 0.00 0.00 2.66
3914 4510 6.633500 TTTCAAGTGAGACCCATTGTAAAG 57.367 37.500 0.00 0.00 0.00 1.85
3921 4517 3.897239 TGTGTTTTCAAGTGAGACCCAT 58.103 40.909 0.00 0.00 0.00 4.00
3932 4528 7.976734 ACAAACTTCGGAATATTGTGTTTTCAA 59.023 29.630 15.99 0.00 33.29 2.69
3973 4571 4.290093 AGAGTACCTGTATTGGCATCAGA 58.710 43.478 13.68 0.00 0.00 3.27
3974 4572 4.679373 AGAGTACCTGTATTGGCATCAG 57.321 45.455 0.00 0.00 0.00 2.90
3975 4573 5.661312 AGTAAGAGTACCTGTATTGGCATCA 59.339 40.000 0.00 0.00 0.00 3.07
4107 4705 0.178992 TCAGAAAAGTGTGGGCTGGG 60.179 55.000 0.00 0.00 0.00 4.45
4108 4706 1.915141 ATCAGAAAAGTGTGGGCTGG 58.085 50.000 0.00 0.00 0.00 4.85
4137 4738 4.775058 TCTCTCTGAGAAGAAACTTCCG 57.225 45.455 8.95 0.00 35.59 4.30
4150 4751 1.895798 ACAATCGTGGCTTCTCTCTGA 59.104 47.619 0.00 0.00 0.00 3.27
4156 4760 1.736032 GCGTAGACAATCGTGGCTTCT 60.736 52.381 0.00 0.00 42.06 2.85
4297 4901 0.608308 ATGACTCCACGACCGTCAGA 60.608 55.000 0.00 0.00 40.56 3.27
4301 4905 2.970639 CCATGACTCCACGACCGT 59.029 61.111 0.00 0.00 0.00 4.83
4342 4946 3.423154 CGCGCGGGCTCTTTCTTT 61.423 61.111 24.84 0.00 36.88 2.52
4505 5109 3.201708 AGGGATGGATGAGGAACAGAAAG 59.798 47.826 0.00 0.00 0.00 2.62
4553 5163 8.021396 GGATAATTAAGCTCGACTTGTTTGTTT 58.979 33.333 9.58 0.00 39.58 2.83
4583 5197 0.552848 AGTGTAATGGCCTCATGGGG 59.447 55.000 7.48 7.48 33.18 4.96
4607 5221 3.367992 TGAGAACGCGGTACAGTAAAA 57.632 42.857 12.47 0.00 0.00 1.52
4611 5225 0.956633 TCTTGAGAACGCGGTACAGT 59.043 50.000 12.47 0.00 0.00 3.55
4612 5226 2.279582 ATCTTGAGAACGCGGTACAG 57.720 50.000 12.47 0.00 0.00 2.74
4613 5227 2.230508 AGAATCTTGAGAACGCGGTACA 59.769 45.455 12.47 5.04 0.00 2.90
4614 5228 2.853003 GAGAATCTTGAGAACGCGGTAC 59.147 50.000 12.47 1.81 0.00 3.34
4616 5230 1.272490 TGAGAATCTTGAGAACGCGGT 59.728 47.619 12.47 1.91 34.92 5.68
4618 5232 3.443037 AGATGAGAATCTTGAGAACGCG 58.557 45.455 3.53 3.53 34.92 6.01
4619 5233 6.893958 TTTAGATGAGAATCTTGAGAACGC 57.106 37.500 0.00 0.00 34.92 4.84
4669 5285 6.546395 ACTGAAATACTGAATGAACGAATGC 58.454 36.000 0.00 0.00 0.00 3.56
4670 5286 7.182761 GGACTGAAATACTGAATGAACGAATG 58.817 38.462 0.00 0.00 0.00 2.67
4671 5287 6.316390 GGGACTGAAATACTGAATGAACGAAT 59.684 38.462 0.00 0.00 0.00 3.34
4672 5288 5.642063 GGGACTGAAATACTGAATGAACGAA 59.358 40.000 0.00 0.00 0.00 3.85
4673 5289 5.046591 AGGGACTGAAATACTGAATGAACGA 60.047 40.000 0.00 0.00 37.18 3.85
4674 5290 5.178797 AGGGACTGAAATACTGAATGAACG 58.821 41.667 0.00 0.00 37.18 3.95
4743 5359 4.272489 TCTGCTTTCTGGTGATAAATGGG 58.728 43.478 0.00 0.00 0.00 4.00
4745 5361 5.675575 GCACTCTGCTTTCTGGTGATAAATG 60.676 44.000 0.00 0.00 40.96 2.32
4746 5362 4.397417 GCACTCTGCTTTCTGGTGATAAAT 59.603 41.667 0.00 0.00 40.96 1.40
4749 5365 2.302733 TGCACTCTGCTTTCTGGTGATA 59.697 45.455 0.00 0.00 45.31 2.15
4750 5366 1.072806 TGCACTCTGCTTTCTGGTGAT 59.927 47.619 0.00 0.00 45.31 3.06
4751 5367 0.469494 TGCACTCTGCTTTCTGGTGA 59.531 50.000 0.00 0.00 45.31 4.02
4752 5368 0.590195 GTGCACTCTGCTTTCTGGTG 59.410 55.000 10.32 0.00 45.31 4.17
4753 5369 0.536006 GGTGCACTCTGCTTTCTGGT 60.536 55.000 17.98 0.00 45.31 4.00
4754 5370 0.250640 AGGTGCACTCTGCTTTCTGG 60.251 55.000 17.98 0.00 45.31 3.86
4755 5371 0.873054 CAGGTGCACTCTGCTTTCTG 59.127 55.000 17.98 8.87 45.31 3.02
4756 5372 0.471617 ACAGGTGCACTCTGCTTTCT 59.528 50.000 25.86 8.35 45.31 2.52
4757 5373 0.871057 GACAGGTGCACTCTGCTTTC 59.129 55.000 25.86 16.66 45.31 2.62
4758 5374 0.471617 AGACAGGTGCACTCTGCTTT 59.528 50.000 25.86 13.23 45.31 3.51
4759 5375 0.034616 GAGACAGGTGCACTCTGCTT 59.965 55.000 25.86 17.83 45.31 3.91
4761 5377 1.375268 GGAGACAGGTGCACTCTGC 60.375 63.158 25.86 18.67 45.29 4.26
4762 5378 0.246086 GAGGAGACAGGTGCACTCTG 59.754 60.000 24.89 24.89 38.16 3.35
4763 5379 0.178950 TGAGGAGACAGGTGCACTCT 60.179 55.000 17.98 11.97 0.00 3.24
4764 5380 0.681733 TTGAGGAGACAGGTGCACTC 59.318 55.000 17.98 6.64 0.00 3.51
4765 5381 0.394565 GTTGAGGAGACAGGTGCACT 59.605 55.000 17.98 0.00 0.00 4.40
4766 5382 0.603975 GGTTGAGGAGACAGGTGCAC 60.604 60.000 8.80 8.80 0.00 4.57
4767 5383 0.764369 AGGTTGAGGAGACAGGTGCA 60.764 55.000 0.00 0.00 0.00 4.57
4768 5384 0.036858 GAGGTTGAGGAGACAGGTGC 60.037 60.000 0.00 0.00 0.00 5.01
4769 5385 1.342074 TGAGGTTGAGGAGACAGGTG 58.658 55.000 0.00 0.00 0.00 4.00
4770 5386 2.183679 GATGAGGTTGAGGAGACAGGT 58.816 52.381 0.00 0.00 0.00 4.00
4783 5399 2.026822 CAGTTAAGTGGCTGGATGAGGT 60.027 50.000 2.05 0.00 0.00 3.85
4790 5406 4.323417 TGTTGATACAGTTAAGTGGCTGG 58.677 43.478 14.69 0.00 37.07 4.85
4808 5424 7.216317 GCGCTGTAAGTAGATTTAACAATGTTG 59.784 37.037 9.15 0.00 35.30 3.33
4835 5451 5.221048 CGCATGGCATGATGATGATATGAAT 60.221 40.000 30.69 0.00 31.24 2.57
4843 5459 0.039527 CACCGCATGGCATGATGATG 60.040 55.000 30.69 15.20 39.70 3.07
4848 5464 1.029408 GGTTACACCGCATGGCATGA 61.029 55.000 30.69 5.90 39.70 3.07
4859 5475 0.876399 AAAATCGCCGTGGTTACACC 59.124 50.000 0.00 0.00 44.86 4.16
4866 5509 2.782615 GGACGAAAATCGCCGTGG 59.217 61.111 0.00 0.00 45.12 4.94
4867 5510 2.394136 CGGACGAAAATCGCCGTG 59.606 61.111 19.81 2.45 46.39 4.94
4874 5517 5.754543 TTAACTGAAAACCGGACGAAAAT 57.245 34.783 9.46 0.00 0.00 1.82
4891 5534 4.736473 AGTGGTTGCCCAGTTAATTAACT 58.264 39.130 22.49 22.49 46.76 2.24
4902 5545 0.178992 CAAGGAAGAGTGGTTGCCCA 60.179 55.000 0.00 0.00 38.87 5.36
4920 5563 0.882484 TTTGCTCCATCGCGTTGACA 60.882 50.000 18.44 10.41 0.00 3.58
4940 5583 2.301870 TCACGCAGGATGAGGTAAAAGT 59.698 45.455 0.00 0.00 41.60 2.66
4946 5589 0.904649 TTGATCACGCAGGATGAGGT 59.095 50.000 0.00 0.00 41.60 3.85
4947 5590 1.938577 CTTTGATCACGCAGGATGAGG 59.061 52.381 0.00 0.00 41.60 3.86
4948 5591 1.329906 GCTTTGATCACGCAGGATGAG 59.670 52.381 10.47 0.00 43.55 2.90
4950 5593 1.089112 TGCTTTGATCACGCAGGATG 58.911 50.000 13.32 0.00 40.87 3.51
4975 5640 1.484240 GCTCAGGAGTAACAGCAGGAT 59.516 52.381 0.00 0.00 0.00 3.24
4976 5641 0.898320 GCTCAGGAGTAACAGCAGGA 59.102 55.000 0.00 0.00 0.00 3.86
4978 5643 2.462456 TTGCTCAGGAGTAACAGCAG 57.538 50.000 0.00 0.00 42.66 4.24
4979 5644 2.928801 TTTGCTCAGGAGTAACAGCA 57.071 45.000 0.00 0.00 40.13 4.41
4980 5645 3.077359 ACATTTGCTCAGGAGTAACAGC 58.923 45.455 0.00 0.00 32.83 4.40
4981 5646 4.067896 ACACATTTGCTCAGGAGTAACAG 58.932 43.478 0.00 0.00 32.83 3.16
4982 5647 4.085357 ACACATTTGCTCAGGAGTAACA 57.915 40.909 0.00 0.00 32.83 2.41
4983 5648 6.554334 TTAACACATTTGCTCAGGAGTAAC 57.446 37.500 0.00 0.00 32.83 2.50
4986 5651 4.082571 GCATTAACACATTTGCTCAGGAGT 60.083 41.667 0.00 0.00 32.41 3.85
4987 5652 4.418392 GCATTAACACATTTGCTCAGGAG 58.582 43.478 0.00 0.00 32.41 3.69
4988 5653 3.193267 GGCATTAACACATTTGCTCAGGA 59.807 43.478 0.00 0.00 35.46 3.86
4989 5654 3.194116 AGGCATTAACACATTTGCTCAGG 59.806 43.478 0.00 0.00 35.46 3.86
4999 5664 4.716784 AGGAGTATCAGAGGCATTAACACA 59.283 41.667 0.00 0.00 36.25 3.72
5009 5674 3.390639 AGGCAATCAAGGAGTATCAGAGG 59.609 47.826 0.00 0.00 36.25 3.69
5087 5762 1.356979 CGGATGAGATGAGACGCGT 59.643 57.895 13.85 13.85 0.00 6.01
5088 5763 1.371022 CCGGATGAGATGAGACGCG 60.371 63.158 3.53 3.53 0.00 6.01
5089 5764 0.103208 AACCGGATGAGATGAGACGC 59.897 55.000 9.46 0.00 0.00 5.19
5168 5856 4.164413 AGGCTGGGTTAGTTAGAAAGGATC 59.836 45.833 0.00 0.00 0.00 3.36
5170 5858 3.518303 GAGGCTGGGTTAGTTAGAAAGGA 59.482 47.826 0.00 0.00 0.00 3.36
5203 5906 7.369607 GTCGGATTAAGTTAGAGGGATTAGAC 58.630 42.308 0.00 0.00 0.00 2.59
5213 5916 3.181507 CGTCACGGTCGGATTAAGTTAGA 60.182 47.826 0.00 0.00 0.00 2.10
5244 5947 2.348998 CACTGACTGGCTCCCCAC 59.651 66.667 0.00 0.00 35.79 4.61
5249 5952 1.670406 CCTGCACACTGACTGGCTC 60.670 63.158 0.00 0.00 0.00 4.70
5253 5956 1.665916 CGTCCCTGCACACTGACTG 60.666 63.158 0.00 0.00 0.00 3.51
5255 5958 2.357517 CCGTCCCTGCACACTGAC 60.358 66.667 0.00 0.00 0.00 3.51
5256 5959 2.842462 ACCGTCCCTGCACACTGA 60.842 61.111 0.00 0.00 0.00 3.41
5258 5961 2.524394 AGACCGTCCCTGCACACT 60.524 61.111 0.00 0.00 0.00 3.55
5259 5962 2.048127 GAGACCGTCCCTGCACAC 60.048 66.667 0.00 0.00 0.00 3.82
5260 5963 3.311110 GGAGACCGTCCCTGCACA 61.311 66.667 0.00 0.00 39.88 4.57
5261 5964 4.436998 CGGAGACCGTCCCTGCAC 62.437 72.222 1.80 0.00 43.47 4.57
5310 6030 1.003580 GAGGTCAATGTCAGCCAGGAA 59.996 52.381 0.00 0.00 0.00 3.36
5311 6031 0.615331 GAGGTCAATGTCAGCCAGGA 59.385 55.000 0.00 0.00 0.00 3.86
5312 6032 0.325933 TGAGGTCAATGTCAGCCAGG 59.674 55.000 0.00 0.00 0.00 4.45
5313 6033 1.002888 AGTGAGGTCAATGTCAGCCAG 59.997 52.381 0.00 0.00 0.00 4.85
5314 6034 1.059098 AGTGAGGTCAATGTCAGCCA 58.941 50.000 0.00 0.00 0.00 4.75
5315 6035 3.334583 TTAGTGAGGTCAATGTCAGCC 57.665 47.619 0.00 0.00 0.00 4.85
5316 6036 4.331168 GTGATTAGTGAGGTCAATGTCAGC 59.669 45.833 0.00 0.00 0.00 4.26
5360 6080 0.179103 CGCCGATTAGTAAACCCCGT 60.179 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.