Multiple sequence alignment - TraesCS6A01G377700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G377700 chr6A 100.000 4475 0 0 1 4475 598927792 598923318 0.000000e+00 8264.0
1 TraesCS6A01G377700 chr6A 86.872 2270 234 32 1376 3598 598810409 598812661 0.000000e+00 2483.0
2 TraesCS6A01G377700 chr6A 83.880 1371 199 7 2212 3566 598860573 598861937 0.000000e+00 1288.0
3 TraesCS6A01G377700 chr6A 83.399 1265 190 12 2224 3475 598790927 598792184 0.000000e+00 1155.0
4 TraesCS6A01G377700 chr6A 78.603 1561 285 35 1940 3475 598156377 598154841 0.000000e+00 987.0
5 TraesCS6A01G377700 chr6A 99.053 528 2 1 3951 4475 578905809 578906336 0.000000e+00 944.0
6 TraesCS6A01G377700 chr6A 83.294 838 113 19 1071 1903 598157654 598156839 0.000000e+00 747.0
7 TraesCS6A01G377700 chr6A 81.524 958 126 34 973 1898 598859201 598860139 0.000000e+00 741.0
8 TraesCS6A01G377700 chr6A 82.199 573 85 11 340 906 598793686 598794247 1.130000e-130 477.0
9 TraesCS6A01G377700 chr6A 86.000 200 23 5 108 304 508181914 508182111 4.540000e-50 209.0
10 TraesCS6A01G377700 chr6A 96.970 33 1 0 939 971 598797029 598797061 6.250000e-04 56.5
11 TraesCS6A01G377700 chr6D 90.132 2118 166 21 1522 3609 452931905 452929801 0.000000e+00 2713.0
12 TraesCS6A01G377700 chr6D 85.179 1680 213 19 1925 3595 452849380 452851032 0.000000e+00 1690.0
13 TraesCS6A01G377700 chr6D 85.250 1661 220 9 1921 3565 452907189 452908840 0.000000e+00 1687.0
14 TraesCS6A01G377700 chr6D 83.583 1267 187 10 2223 3475 452841376 452842635 0.000000e+00 1168.0
15 TraesCS6A01G377700 chr6D 78.423 1585 292 36 1921 3475 452484908 452483344 0.000000e+00 987.0
16 TraesCS6A01G377700 chr6D 83.732 836 113 15 1071 1903 452485809 452484994 0.000000e+00 769.0
17 TraesCS6A01G377700 chr6D 92.803 528 38 0 1376 1903 452848803 452849330 0.000000e+00 765.0
18 TraesCS6A01G377700 chr6D 80.957 940 159 15 973 1903 452839609 452840537 0.000000e+00 726.0
19 TraesCS6A01G377700 chr6D 80.376 958 137 33 973 1900 452906198 452907134 0.000000e+00 680.0
20 TraesCS6A01G377700 chr6D 81.961 571 89 8 340 906 452844139 452844699 5.240000e-129 472.0
21 TraesCS6A01G377700 chr6D 87.164 335 24 4 1 317 452932241 452931908 3.290000e-96 363.0
22 TraesCS6A01G377700 chr6D 81.707 246 28 12 971 1205 452909861 452910100 5.910000e-44 189.0
23 TraesCS6A01G377700 chr6D 88.966 145 15 1 1063 1207 452848601 452848744 1.280000e-40 178.0
24 TraesCS6A01G377700 chr6B 87.511 2370 216 36 1264 3599 688126199 688123876 0.000000e+00 2663.0
25 TraesCS6A01G377700 chr6B 90.446 1256 109 3 2235 3479 688033490 688032235 0.000000e+00 1644.0
26 TraesCS6A01G377700 chr6B 88.121 1389 144 8 2222 3599 688064587 688063209 0.000000e+00 1631.0
27 TraesCS6A01G377700 chr6B 90.882 998 67 8 1 978 688128776 688127783 0.000000e+00 1317.0
28 TraesCS6A01G377700 chr6B 90.113 971 50 26 792 1723 688080888 688079925 0.000000e+00 1219.0
29 TraesCS6A01G377700 chr6B 83.807 1266 183 10 2224 3475 687732945 687734202 0.000000e+00 1182.0
30 TraesCS6A01G377700 chr6B 86.957 989 68 15 2 971 688081662 688080716 0.000000e+00 1055.0
31 TraesCS6A01G377700 chr6B 86.359 953 92 26 973 1903 687873607 687874543 0.000000e+00 1005.0
32 TraesCS6A01G377700 chr6B 85.430 954 105 23 892 1827 687959156 687960093 0.000000e+00 961.0
33 TraesCS6A01G377700 chr6B 84.211 836 118 12 1071 1903 687180453 687179629 0.000000e+00 800.0
34 TraesCS6A01G377700 chr6B 87.865 445 49 5 2064 2506 687790097 687790538 6.640000e-143 518.0
35 TraesCS6A01G377700 chr6B 82.160 611 78 17 1617 2197 687255264 687255873 3.110000e-136 496.0
36 TraesCS6A01G377700 chr6B 90.429 303 23 3 975 1274 688127748 688127449 1.170000e-105 394.0
37 TraesCS6A01G377700 chr6B 88.809 277 26 3 1923 2195 688033778 688033503 7.170000e-88 335.0
38 TraesCS6A01G377700 chr6B 82.906 234 34 2 1921 2154 687874618 687874845 5.870000e-49 206.0
39 TraesCS6A01G377700 chr6B 88.202 178 7 2 801 978 688034158 688033995 2.730000e-47 200.0
40 TraesCS6A01G377700 chr6B 92.405 79 2 1 975 1049 688033960 688033882 4.730000e-20 110.0
41 TraesCS6A01G377700 chr3B 99.245 530 1 1 3949 4475 816308090 816308619 0.000000e+00 953.0
42 TraesCS6A01G377700 chr2A 99.242 528 1 1 3951 4475 7839332 7838805 0.000000e+00 950.0
43 TraesCS6A01G377700 chr3A 99.057 530 2 1 3949 4475 484650246 484649717 0.000000e+00 948.0
44 TraesCS6A01G377700 chr1B 99.053 528 2 1 3951 4475 675325285 675325812 0.000000e+00 944.0
45 TraesCS6A01G377700 chr5A 98.864 528 3 1 3951 4475 453529009 453528482 0.000000e+00 939.0
46 TraesCS6A01G377700 chr5A 83.163 196 31 2 108 302 631400964 631401158 1.280000e-40 178.0
47 TraesCS6A01G377700 chr5A 81.250 96 14 3 3722 3815 603578611 603578518 1.730000e-09 75.0
48 TraesCS6A01G377700 chr4A 98.864 528 3 1 3951 4475 656557422 656557949 0.000000e+00 939.0
49 TraesCS6A01G377700 chr4A 83.673 196 29 3 108 301 81761306 81761500 9.890000e-42 182.0
50 TraesCS6A01G377700 chr2B 98.682 531 4 1 3948 4475 624284777 624284247 0.000000e+00 939.0
51 TraesCS6A01G377700 chr2B 98.864 528 1 3 3951 4475 733174296 733173771 0.000000e+00 937.0
52 TraesCS6A01G377700 chr2D 85.128 195 26 3 108 300 516627656 516627849 3.530000e-46 196.0
53 TraesCS6A01G377700 chr2D 83.838 198 27 5 108 302 312058426 312058231 2.750000e-42 183.0
54 TraesCS6A01G377700 chr7A 83.590 195 29 3 108 300 271344274 271344081 3.560000e-41 180.0
55 TraesCS6A01G377700 chr7B 80.556 108 16 4 3719 3824 512690322 512690218 1.330000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G377700 chr6A 598923318 598927792 4474 True 8264.000000 8264 100.000000 1 4475 1 chr6A.!!$R1 4474
1 TraesCS6A01G377700 chr6A 598810409 598812661 2252 False 2483.000000 2483 86.872000 1376 3598 1 chr6A.!!$F3 2222
2 TraesCS6A01G377700 chr6A 598859201 598861937 2736 False 1014.500000 1288 82.702000 973 3566 2 chr6A.!!$F5 2593
3 TraesCS6A01G377700 chr6A 578905809 578906336 527 False 944.000000 944 99.053000 3951 4475 1 chr6A.!!$F2 524
4 TraesCS6A01G377700 chr6A 598154841 598157654 2813 True 867.000000 987 80.948500 1071 3475 2 chr6A.!!$R2 2404
5 TraesCS6A01G377700 chr6A 598790927 598797061 6134 False 562.833333 1155 87.522667 340 3475 3 chr6A.!!$F4 3135
6 TraesCS6A01G377700 chr6D 452929801 452932241 2440 True 1538.000000 2713 88.648000 1 3609 2 chr6D.!!$R2 3608
7 TraesCS6A01G377700 chr6D 452483344 452485809 2465 True 878.000000 987 81.077500 1071 3475 2 chr6D.!!$R1 2404
8 TraesCS6A01G377700 chr6D 452906198 452910100 3902 False 852.000000 1687 82.444333 971 3565 3 chr6D.!!$F2 2594
9 TraesCS6A01G377700 chr6D 452839609 452851032 11423 False 833.166667 1690 85.574833 340 3595 6 chr6D.!!$F1 3255
10 TraesCS6A01G377700 chr6B 688063209 688064587 1378 True 1631.000000 1631 88.121000 2222 3599 1 chr6B.!!$R2 1377
11 TraesCS6A01G377700 chr6B 688123876 688128776 4900 True 1458.000000 2663 89.607333 1 3599 3 chr6B.!!$R5 3598
12 TraesCS6A01G377700 chr6B 687732945 687734202 1257 False 1182.000000 1182 83.807000 2224 3475 1 chr6B.!!$F2 1251
13 TraesCS6A01G377700 chr6B 688079925 688081662 1737 True 1137.000000 1219 88.535000 2 1723 2 chr6B.!!$R4 1721
14 TraesCS6A01G377700 chr6B 687959156 687960093 937 False 961.000000 961 85.430000 892 1827 1 chr6B.!!$F4 935
15 TraesCS6A01G377700 chr6B 687179629 687180453 824 True 800.000000 800 84.211000 1071 1903 1 chr6B.!!$R1 832
16 TraesCS6A01G377700 chr6B 687873607 687874845 1238 False 605.500000 1005 84.632500 973 2154 2 chr6B.!!$F5 1181
17 TraesCS6A01G377700 chr6B 688032235 688034158 1923 True 572.250000 1644 89.965500 801 3479 4 chr6B.!!$R3 2678
18 TraesCS6A01G377700 chr6B 687255264 687255873 609 False 496.000000 496 82.160000 1617 2197 1 chr6B.!!$F1 580
19 TraesCS6A01G377700 chr3B 816308090 816308619 529 False 953.000000 953 99.245000 3949 4475 1 chr3B.!!$F1 526
20 TraesCS6A01G377700 chr2A 7838805 7839332 527 True 950.000000 950 99.242000 3951 4475 1 chr2A.!!$R1 524
21 TraesCS6A01G377700 chr3A 484649717 484650246 529 True 948.000000 948 99.057000 3949 4475 1 chr3A.!!$R1 526
22 TraesCS6A01G377700 chr1B 675325285 675325812 527 False 944.000000 944 99.053000 3951 4475 1 chr1B.!!$F1 524
23 TraesCS6A01G377700 chr5A 453528482 453529009 527 True 939.000000 939 98.864000 3951 4475 1 chr5A.!!$R1 524
24 TraesCS6A01G377700 chr4A 656557422 656557949 527 False 939.000000 939 98.864000 3951 4475 1 chr4A.!!$F2 524
25 TraesCS6A01G377700 chr2B 624284247 624284777 530 True 939.000000 939 98.682000 3948 4475 1 chr2B.!!$R1 527
26 TraesCS6A01G377700 chr2B 733173771 733174296 525 True 937.000000 937 98.864000 3951 4475 1 chr2B.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 4605 0.038983 TTGATGACGACGAAGCGGAA 60.039 50.0 0.00 0.0 35.12 4.30 F
1374 10681 0.246635 CGTTCATGTCCCTCGGAACT 59.753 55.0 0.00 0.0 37.94 3.01 F
2000 11775 0.596082 TGAAGACATCGACGAGTGCA 59.404 50.0 3.01 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 11801 0.108186 TTGTGCAGATCCCGTAGCAG 60.108 55.0 0.00 0.00 37.72 4.24 R
2631 12544 0.250989 TCCGGTGGTTGATTTGGGAC 60.251 55.0 0.00 0.00 0.00 4.46 R
3900 13833 0.110486 CCCAAGTAGCCGGGCATATT 59.890 55.0 23.09 9.27 35.09 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.665812 TCCCTAAGATTGTAACTAGCCATGT 59.334 40.000 0.00 0.00 0.00 3.21
35 36 8.807948 AAGATTGTAACTAGCCATGTGTAAAT 57.192 30.769 0.00 0.00 0.00 1.40
46 47 4.929808 GCCATGTGTAAATCCTAGATACCG 59.070 45.833 0.00 0.00 0.00 4.02
48 49 5.510690 CCATGTGTAAATCCTAGATACCGCA 60.511 44.000 0.00 0.00 0.00 5.69
84 86 5.103430 AGCCAAGAGGTTAGTCTATAGAGGT 60.103 44.000 1.64 0.00 37.19 3.85
133 152 6.531021 TCACGAGGTAGATCATCATGTACTA 58.469 40.000 0.00 0.00 30.86 1.82
169 188 7.765819 TCCACAATCGATATTATATGAGCAAGG 59.234 37.037 0.00 0.00 0.00 3.61
221 240 1.847737 ACCTGGGTAAAACTGTGTCCA 59.152 47.619 0.00 0.00 0.00 4.02
255 274 5.046878 TGTTAACCATCGTACCAAGATCACT 60.047 40.000 2.48 0.00 0.00 3.41
326 345 2.767972 TCTCCTCCACCATGACATCAT 58.232 47.619 0.00 0.00 36.96 2.45
356 4548 0.758734 CTGAAGGGGACACAGTCACA 59.241 55.000 1.48 0.00 37.77 3.58
403 4595 7.981789 AGCTATCAAAGATTTAGTTGATGACGA 59.018 33.333 8.73 0.00 42.86 4.20
413 4605 0.038983 TTGATGACGACGAAGCGGAA 60.039 50.000 0.00 0.00 35.12 4.30
427 4619 3.409026 AGCGGAAAAGATGACAGAAGT 57.591 42.857 0.00 0.00 0.00 3.01
572 4765 9.755804 CATCATACAATATGTGTCTTGTAGTCT 57.244 33.333 0.00 0.00 40.19 3.24
585 4778 5.889289 GTCTTGTAGTCTAAGTCTCTCCCAT 59.111 44.000 0.00 0.00 0.00 4.00
586 4779 7.055378 GTCTTGTAGTCTAAGTCTCTCCCATA 58.945 42.308 0.00 0.00 0.00 2.74
629 4822 3.724508 ATGAAGCTGAGATCGGTACAG 57.275 47.619 0.00 0.00 35.14 2.74
632 4825 1.686355 AGCTGAGATCGGTACAGGAG 58.314 55.000 0.00 0.00 33.00 3.69
644 4837 6.785337 TCGGTACAGGAGAGAAATATTCAA 57.215 37.500 0.00 0.00 0.00 2.69
695 4888 9.796180 AACATTGTGGGTTATTACAGTAACTTA 57.204 29.630 0.00 0.00 35.43 2.24
712 4905 8.514594 CAGTAACTTACATTGTTCATTGGTCAT 58.485 33.333 0.00 0.00 0.00 3.06
715 4908 8.816640 AACTTACATTGTTCATTGGTCATTTC 57.183 30.769 0.00 0.00 0.00 2.17
728 4922 4.877282 TGGTCATTTCGTCAAATTTTCCC 58.123 39.130 0.00 0.00 28.97 3.97
729 4923 4.342378 TGGTCATTTCGTCAAATTTTCCCA 59.658 37.500 0.00 0.00 28.97 4.37
730 4924 5.011533 TGGTCATTTCGTCAAATTTTCCCAT 59.988 36.000 0.00 0.00 28.97 4.00
733 4927 7.041440 GGTCATTTCGTCAAATTTTCCCATTTT 60.041 33.333 0.00 0.00 28.97 1.82
762 4956 5.912955 GCAAACACGCTTAAGAAAACAGTAT 59.087 36.000 6.67 0.00 0.00 2.12
763 4957 6.129457 GCAAACACGCTTAAGAAAACAGTATG 60.129 38.462 6.67 0.00 46.00 2.39
780 4974 6.791887 CAGTATGTTGAACTGTGACAATCT 57.208 37.500 0.00 1.23 39.61 2.40
781 4975 6.596703 CAGTATGTTGAACTGTGACAATCTG 58.403 40.000 0.00 7.67 39.61 2.90
782 4976 6.203530 CAGTATGTTGAACTGTGACAATCTGT 59.796 38.462 0.00 0.00 39.61 3.41
783 4977 4.880886 TGTTGAACTGTGACAATCTGTG 57.119 40.909 0.00 0.00 0.00 3.66
784 4978 4.260985 TGTTGAACTGTGACAATCTGTGT 58.739 39.130 0.00 0.00 45.74 3.72
861 5085 7.310237 GGCAATAGGCAATTGAATATTGATCCT 60.310 37.037 29.01 17.97 46.81 3.24
881 5105 3.191581 CCTCTTGACTACTTTCTGCGAGA 59.808 47.826 0.00 0.00 0.00 4.04
971 8937 1.001746 CGGTCCATCTCCATCATCCAG 59.998 57.143 0.00 0.00 0.00 3.86
1051 9074 2.125391 TGCTCATCGTGCTGCCTC 60.125 61.111 0.00 0.00 0.00 4.70
1052 9075 2.894387 GCTCATCGTGCTGCCTCC 60.894 66.667 0.00 0.00 0.00 4.30
1374 10681 0.246635 CGTTCATGTCCCTCGGAACT 59.753 55.000 0.00 0.00 37.94 3.01
1653 10986 2.078914 CACGTCGTGCCACTACGTC 61.079 63.158 22.52 3.26 45.37 4.34
1907 11249 3.040965 ACCTCGACGGTGGAGTTAA 57.959 52.632 17.23 0.00 46.80 2.01
1909 11251 2.726821 ACCTCGACGGTGGAGTTAATA 58.273 47.619 17.23 0.00 46.80 0.98
1910 11252 2.424956 ACCTCGACGGTGGAGTTAATAC 59.575 50.000 17.23 0.00 46.80 1.89
1913 11255 3.346315 TCGACGGTGGAGTTAATACTGA 58.654 45.455 0.00 0.00 33.84 3.41
1915 11257 4.400251 TCGACGGTGGAGTTAATACTGAAT 59.600 41.667 0.00 0.00 33.84 2.57
1916 11258 5.105635 TCGACGGTGGAGTTAATACTGAATT 60.106 40.000 0.00 0.00 33.84 2.17
1919 11261 6.469410 ACGGTGGAGTTAATACTGAATTTCA 58.531 36.000 0.00 0.00 33.84 2.69
1935 11355 5.588246 TGAATTTCAGTTGTGCTCTGTTACA 59.412 36.000 0.00 0.00 34.86 2.41
2000 11775 0.596082 TGAAGACATCGACGAGTGCA 59.404 50.000 3.01 0.00 0.00 4.57
2011 11792 2.476619 CGACGAGTGCAAACTGAAAGAT 59.523 45.455 0.00 0.00 37.43 2.40
2020 11801 4.462483 TGCAAACTGAAAGATGAATACCCC 59.538 41.667 0.00 0.00 37.43 4.95
2072 11861 1.549203 CTACACTTGCCAATGCCCTT 58.451 50.000 0.00 0.00 36.33 3.95
2200 12092 7.282675 TGTTGGTTCGTCCTACAATTTCTTTTA 59.717 33.333 11.94 0.00 45.76 1.52
2201 12093 7.193377 TGGTTCGTCCTACAATTTCTTTTAC 57.807 36.000 1.80 0.00 37.07 2.01
2203 12095 6.301861 GTTCGTCCTACAATTTCTTTTACGG 58.698 40.000 0.00 0.00 0.00 4.02
2244 12139 3.276857 GTTCTTCCCGGGAATCTAAACC 58.723 50.000 35.62 15.37 33.28 3.27
2258 12153 8.787852 GGGAATCTAAACCAATGATCAAGTATC 58.212 37.037 0.00 0.00 34.93 2.24
2268 12163 6.319405 CCAATGATCAAGTATCCAATGTGTCA 59.681 38.462 0.00 0.00 33.22 3.58
2269 12164 7.013942 CCAATGATCAAGTATCCAATGTGTCAT 59.986 37.037 0.00 0.00 33.22 3.06
2300 12197 0.629058 AGTGTGGGGGTGTTCTTGTT 59.371 50.000 0.00 0.00 0.00 2.83
2631 12544 0.317799 CGAGGGAGATGCTCATCCTG 59.682 60.000 6.27 0.00 38.58 3.86
2637 12550 1.487976 GAGATGCTCATCCTGTCCCAA 59.512 52.381 6.27 0.00 38.58 4.12
2736 12649 0.537188 CCAACGGCACTCTCTACCAT 59.463 55.000 0.00 0.00 0.00 3.55
2749 12662 3.327757 TCTCTACCATTACATCCATGGCC 59.672 47.826 6.96 0.00 44.69 5.36
2793 12706 3.129502 CTCGACACCCGCCTACGA 61.130 66.667 0.00 0.00 43.93 3.43
2874 12787 1.374125 CCACGGCGATGTCAAGACA 60.374 57.895 16.62 5.24 46.44 3.41
2892 12805 0.463295 CAGCCAACATCCTGCTCGAT 60.463 55.000 0.00 0.00 31.77 3.59
2895 12808 0.107508 CCAACATCCTGCTCGATGGT 60.108 55.000 15.23 8.08 43.34 3.55
2904 12817 1.299468 GCTCGATGGTAGCCTCACG 60.299 63.158 0.00 0.00 33.73 4.35
2916 12829 1.376037 CCTCACGGCCAAAGTCTCC 60.376 63.158 2.24 0.00 0.00 3.71
2973 12886 2.611971 GGTTGAGATTGCGACACTGGTA 60.612 50.000 0.00 0.00 0.00 3.25
3141 13055 0.321653 GCCTTGTGTCCCGATTCACT 60.322 55.000 0.00 0.00 35.82 3.41
3193 13107 1.213013 CTTGACGGTCGGGTGAGAG 59.787 63.158 3.34 0.00 0.00 3.20
3211 13125 1.152525 GTAGAGATGGGCCCCGAGA 60.153 63.158 22.27 0.00 0.00 4.04
3225 13139 1.270147 CCCGAGACGTTGGAAGAAGTT 60.270 52.381 4.20 0.00 0.00 2.66
3227 13141 3.243336 CCGAGACGTTGGAAGAAGTTAG 58.757 50.000 0.00 0.00 0.00 2.34
3271 13185 0.467384 CATGATCAGGGAGGAGCGTT 59.533 55.000 0.09 0.00 0.00 4.84
3387 13307 1.280133 AGCTTGCTTGGCAGAGACATA 59.720 47.619 0.00 0.00 40.61 2.29
3414 13342 8.432110 AGCAACAACGTGATGTGAATTATATA 57.568 30.769 0.00 0.00 32.81 0.86
3475 13404 7.331193 GCAGTACATACACTTTTAGCTTGTAGT 59.669 37.037 0.00 0.00 0.00 2.73
3514 13444 7.645402 AGGGTTTTTAGTTTGTAGATTGTTCG 58.355 34.615 0.00 0.00 0.00 3.95
3523 13453 6.636850 AGTTTGTAGATTGTTCGAATGTTTGC 59.363 34.615 0.00 0.00 0.00 3.68
3536 13467 4.215399 CGAATGTTTGCTGGACTCCTTTTA 59.785 41.667 0.00 0.00 0.00 1.52
3569 13502 7.884668 CACAAATGTGTAAAGTCTTTTGTGTC 58.115 34.615 19.06 0.00 44.73 3.67
3588 13521 8.445275 TTGTGTCTAACAACAGAAATGTACAT 57.555 30.769 1.41 1.41 43.96 2.29
3590 13523 9.549078 TGTGTCTAACAACAGAAATGTACATTA 57.451 29.630 21.07 1.91 35.24 1.90
3601 13534 9.685276 ACAGAAATGTACATTAATTCCATCTGA 57.315 29.630 31.67 0.00 33.40 3.27
3606 13539 9.699410 AATGTACATTAATTCCATCTGAAAGGA 57.301 29.630 19.51 0.00 36.33 3.36
3613 13546 4.305539 TTCCATCTGAAAGGAATGCTCA 57.694 40.909 9.95 0.00 38.91 4.26
3614 13547 4.515028 TCCATCTGAAAGGAATGCTCAT 57.485 40.909 0.28 0.00 0.00 2.90
3615 13548 4.863548 TCCATCTGAAAGGAATGCTCATT 58.136 39.130 0.28 0.00 0.00 2.57
3617 13550 6.425735 TCCATCTGAAAGGAATGCTCATTAA 58.574 36.000 0.28 0.00 0.00 1.40
3618 13551 6.319658 TCCATCTGAAAGGAATGCTCATTAAC 59.680 38.462 0.28 0.00 0.00 2.01
3619 13552 6.095860 CCATCTGAAAGGAATGCTCATTAACA 59.904 38.462 0.00 0.00 0.00 2.41
3620 13553 7.363181 CCATCTGAAAGGAATGCTCATTAACAA 60.363 37.037 0.00 0.00 0.00 2.83
3621 13554 7.523293 TCTGAAAGGAATGCTCATTAACAAA 57.477 32.000 0.00 0.00 0.00 2.83
3622 13555 7.950512 TCTGAAAGGAATGCTCATTAACAAAA 58.049 30.769 0.00 0.00 0.00 2.44
3623 13556 8.084073 TCTGAAAGGAATGCTCATTAACAAAAG 58.916 33.333 0.00 0.00 0.00 2.27
3624 13557 7.950512 TGAAAGGAATGCTCATTAACAAAAGA 58.049 30.769 0.00 0.00 0.00 2.52
3625 13558 8.084073 TGAAAGGAATGCTCATTAACAAAAGAG 58.916 33.333 0.00 0.00 0.00 2.85
3626 13559 7.765695 AAGGAATGCTCATTAACAAAAGAGA 57.234 32.000 0.00 0.00 0.00 3.10
3628 13561 8.181904 AGGAATGCTCATTAACAAAAGAGAAA 57.818 30.769 0.00 0.00 0.00 2.52
3630 13563 8.866956 GGAATGCTCATTAACAAAAGAGAAATG 58.133 33.333 0.00 0.00 0.00 2.32
3634 13567 7.169645 TGCTCATTAACAAAAGAGAAATGCAAC 59.830 33.333 0.00 0.00 0.00 4.17
3635 13568 7.383300 GCTCATTAACAAAAGAGAAATGCAACT 59.617 33.333 0.00 0.00 0.00 3.16
3663 13596 8.814038 AAAATAAGAGAGAAATGTACCATGCT 57.186 30.769 0.00 0.00 0.00 3.79
3664 13597 9.905713 AAAATAAGAGAGAAATGTACCATGCTA 57.094 29.630 0.00 0.00 0.00 3.49
3665 13598 9.905713 AAATAAGAGAGAAATGTACCATGCTAA 57.094 29.630 0.00 0.00 0.00 3.09
3666 13599 9.905713 AATAAGAGAGAAATGTACCATGCTAAA 57.094 29.630 0.00 0.00 0.00 1.85
3667 13600 9.905713 ATAAGAGAGAAATGTACCATGCTAAAA 57.094 29.630 0.00 0.00 0.00 1.52
3668 13601 8.635765 AAGAGAGAAATGTACCATGCTAAAAA 57.364 30.769 0.00 0.00 0.00 1.94
3669 13602 8.273780 AGAGAGAAATGTACCATGCTAAAAAG 57.726 34.615 0.00 0.00 0.00 2.27
3670 13603 7.337942 AGAGAGAAATGTACCATGCTAAAAAGG 59.662 37.037 0.00 0.00 0.00 3.11
3671 13604 6.948309 AGAGAAATGTACCATGCTAAAAAGGT 59.052 34.615 0.00 0.00 38.14 3.50
3672 13605 6.924111 AGAAATGTACCATGCTAAAAAGGTG 58.076 36.000 0.00 0.00 35.62 4.00
3673 13606 6.493458 AGAAATGTACCATGCTAAAAAGGTGT 59.507 34.615 0.00 0.00 35.62 4.16
3674 13607 7.668052 AGAAATGTACCATGCTAAAAAGGTGTA 59.332 33.333 0.00 0.00 35.62 2.90
3675 13608 7.391148 AATGTACCATGCTAAAAAGGTGTAG 57.609 36.000 0.00 0.00 35.62 2.74
3676 13609 5.250200 TGTACCATGCTAAAAAGGTGTAGG 58.750 41.667 0.00 0.00 35.62 3.18
3677 13610 3.697166 ACCATGCTAAAAAGGTGTAGGG 58.303 45.455 0.00 0.00 32.04 3.53
3678 13611 3.023832 CCATGCTAAAAAGGTGTAGGGG 58.976 50.000 0.00 0.00 0.00 4.79
3679 13612 3.308832 CCATGCTAAAAAGGTGTAGGGGA 60.309 47.826 0.00 0.00 0.00 4.81
3680 13613 3.428413 TGCTAAAAAGGTGTAGGGGAC 57.572 47.619 0.00 0.00 0.00 4.46
3681 13614 2.712087 TGCTAAAAAGGTGTAGGGGACA 59.288 45.455 0.00 0.00 34.94 4.02
3682 13615 3.332485 TGCTAAAAAGGTGTAGGGGACAT 59.668 43.478 0.00 0.00 41.14 3.06
3683 13616 3.694566 GCTAAAAAGGTGTAGGGGACATG 59.305 47.826 0.00 0.00 41.14 3.21
3684 13617 2.215942 AAAAGGTGTAGGGGACATGC 57.784 50.000 0.00 0.00 41.14 4.06
3685 13618 1.372501 AAAGGTGTAGGGGACATGCT 58.627 50.000 0.00 0.00 41.14 3.79
3686 13619 0.912486 AAGGTGTAGGGGACATGCTC 59.088 55.000 0.00 0.00 41.14 4.26
3687 13620 0.983378 AGGTGTAGGGGACATGCTCC 60.983 60.000 0.00 0.00 41.14 4.70
3692 13625 4.056805 GGGGACATGCTCCTCAGA 57.943 61.111 12.27 0.00 39.81 3.27
3693 13626 2.300996 GGGGACATGCTCCTCAGAA 58.699 57.895 12.27 0.00 39.81 3.02
3694 13627 0.179936 GGGGACATGCTCCTCAGAAG 59.820 60.000 12.27 0.00 39.81 2.85
3695 13628 0.908198 GGGACATGCTCCTCAGAAGT 59.092 55.000 12.27 0.00 39.39 3.01
3696 13629 2.111384 GGGACATGCTCCTCAGAAGTA 58.889 52.381 12.27 0.00 39.39 2.24
3697 13630 2.159028 GGGACATGCTCCTCAGAAGTAC 60.159 54.545 12.27 0.00 39.39 2.73
3698 13631 2.159028 GGACATGCTCCTCAGAAGTACC 60.159 54.545 0.00 0.00 35.89 3.34
3699 13632 2.497675 GACATGCTCCTCAGAAGTACCA 59.502 50.000 0.00 0.00 0.00 3.25
3700 13633 3.110705 ACATGCTCCTCAGAAGTACCAT 58.889 45.455 0.00 0.00 0.00 3.55
3701 13634 4.290093 ACATGCTCCTCAGAAGTACCATA 58.710 43.478 0.00 0.00 0.00 2.74
3702 13635 4.100189 ACATGCTCCTCAGAAGTACCATAC 59.900 45.833 0.00 0.00 0.00 2.39
3703 13636 2.688446 TGCTCCTCAGAAGTACCATACG 59.312 50.000 0.00 0.00 0.00 3.06
3704 13637 2.950309 GCTCCTCAGAAGTACCATACGA 59.050 50.000 0.00 0.00 0.00 3.43
3705 13638 3.243134 GCTCCTCAGAAGTACCATACGAC 60.243 52.174 0.00 0.00 0.00 4.34
3706 13639 3.945921 CTCCTCAGAAGTACCATACGACA 59.054 47.826 0.00 0.00 0.00 4.35
3707 13640 3.945921 TCCTCAGAAGTACCATACGACAG 59.054 47.826 0.00 0.00 0.00 3.51
3708 13641 3.945921 CCTCAGAAGTACCATACGACAGA 59.054 47.826 0.00 0.00 0.00 3.41
3709 13642 4.201930 CCTCAGAAGTACCATACGACAGAC 60.202 50.000 0.00 0.00 0.00 3.51
3710 13643 4.586884 TCAGAAGTACCATACGACAGACT 58.413 43.478 0.00 0.00 0.00 3.24
3711 13644 4.634883 TCAGAAGTACCATACGACAGACTC 59.365 45.833 0.00 0.00 0.00 3.36
3712 13645 4.636648 CAGAAGTACCATACGACAGACTCT 59.363 45.833 0.00 0.00 0.00 3.24
3713 13646 5.124138 CAGAAGTACCATACGACAGACTCTT 59.876 44.000 0.00 0.00 0.00 2.85
3714 13647 6.315642 CAGAAGTACCATACGACAGACTCTTA 59.684 42.308 0.00 0.00 0.00 2.10
3715 13648 6.883217 AGAAGTACCATACGACAGACTCTTAA 59.117 38.462 0.00 0.00 0.00 1.85
3716 13649 7.556996 AGAAGTACCATACGACAGACTCTTAAT 59.443 37.037 0.00 0.00 0.00 1.40
3717 13650 7.028926 AGTACCATACGACAGACTCTTAATG 57.971 40.000 0.00 0.00 0.00 1.90
3718 13651 6.827251 AGTACCATACGACAGACTCTTAATGA 59.173 38.462 0.00 0.00 0.00 2.57
3719 13652 6.716934 ACCATACGACAGACTCTTAATGAT 57.283 37.500 0.00 0.00 0.00 2.45
3720 13653 6.507900 ACCATACGACAGACTCTTAATGATG 58.492 40.000 0.00 0.00 0.00 3.07
3721 13654 6.321435 ACCATACGACAGACTCTTAATGATGA 59.679 38.462 0.00 0.00 0.00 2.92
3722 13655 7.147897 ACCATACGACAGACTCTTAATGATGAA 60.148 37.037 0.00 0.00 0.00 2.57
3723 13656 7.706607 CCATACGACAGACTCTTAATGATGAAA 59.293 37.037 0.00 0.00 0.00 2.69
3724 13657 9.087424 CATACGACAGACTCTTAATGATGAAAA 57.913 33.333 0.00 0.00 0.00 2.29
3725 13658 7.352719 ACGACAGACTCTTAATGATGAAAAC 57.647 36.000 0.00 0.00 0.00 2.43
3726 13659 6.929049 ACGACAGACTCTTAATGATGAAAACA 59.071 34.615 0.00 0.00 0.00 2.83
3727 13660 7.441157 ACGACAGACTCTTAATGATGAAAACAA 59.559 33.333 0.00 0.00 0.00 2.83
3728 13661 8.282592 CGACAGACTCTTAATGATGAAAACAAA 58.717 33.333 0.00 0.00 0.00 2.83
3742 13675 9.571810 TGATGAAAACAAATCTTAATTCCGATG 57.428 29.630 0.00 0.00 0.00 3.84
3743 13676 9.573133 GATGAAAACAAATCTTAATTCCGATGT 57.427 29.630 0.00 0.00 0.00 3.06
3744 13677 9.927668 ATGAAAACAAATCTTAATTCCGATGTT 57.072 25.926 0.00 0.00 0.00 2.71
3745 13678 9.757227 TGAAAACAAATCTTAATTCCGATGTTT 57.243 25.926 0.00 0.00 35.28 2.83
3747 13680 9.757227 AAAACAAATCTTAATTCCGATGTTTGA 57.243 25.926 0.00 0.00 34.59 2.69
3748 13681 9.927668 AAACAAATCTTAATTCCGATGTTTGAT 57.072 25.926 0.00 0.00 33.76 2.57
3749 13682 9.927668 AACAAATCTTAATTCCGATGTTTGATT 57.072 25.926 0.00 0.00 0.00 2.57
3750 13683 9.927668 ACAAATCTTAATTCCGATGTTTGATTT 57.072 25.926 0.00 0.00 33.61 2.17
3752 13685 9.927668 AAATCTTAATTCCGATGTTTGATTTGT 57.072 25.926 0.00 0.00 32.60 2.83
3756 13689 9.840427 CTTAATTCCGATGTTTGATTTGTAAGT 57.160 29.630 0.00 0.00 0.00 2.24
3760 13693 9.787532 ATTCCGATGTTTGATTTGTAAGTTATG 57.212 29.630 0.00 0.00 0.00 1.90
3761 13694 7.757526 TCCGATGTTTGATTTGTAAGTTATGG 58.242 34.615 0.00 0.00 0.00 2.74
3762 13695 6.472163 CCGATGTTTGATTTGTAAGTTATGGC 59.528 38.462 0.00 0.00 0.00 4.40
3763 13696 7.250569 CGATGTTTGATTTGTAAGTTATGGCT 58.749 34.615 0.00 0.00 0.00 4.75
3764 13697 7.754924 CGATGTTTGATTTGTAAGTTATGGCTT 59.245 33.333 0.00 0.00 0.00 4.35
3765 13698 9.423061 GATGTTTGATTTGTAAGTTATGGCTTT 57.577 29.630 0.00 0.00 0.00 3.51
3766 13699 9.777297 ATGTTTGATTTGTAAGTTATGGCTTTT 57.223 25.926 0.00 0.00 0.00 2.27
3767 13700 9.606631 TGTTTGATTTGTAAGTTATGGCTTTTT 57.393 25.926 0.00 0.00 0.00 1.94
3802 13735 8.992835 AAAATCTGAATTAAATGCTTCCACTC 57.007 30.769 0.00 0.00 0.00 3.51
3803 13736 6.705863 ATCTGAATTAAATGCTTCCACTCC 57.294 37.500 0.00 0.00 0.00 3.85
3804 13737 5.819991 TCTGAATTAAATGCTTCCACTCCT 58.180 37.500 0.00 0.00 0.00 3.69
3805 13738 5.649395 TCTGAATTAAATGCTTCCACTCCTG 59.351 40.000 0.00 0.00 0.00 3.86
3806 13739 5.324409 TGAATTAAATGCTTCCACTCCTGT 58.676 37.500 0.00 0.00 0.00 4.00
3807 13740 5.774690 TGAATTAAATGCTTCCACTCCTGTT 59.225 36.000 0.00 0.00 0.00 3.16
3808 13741 5.904362 ATTAAATGCTTCCACTCCTGTTC 57.096 39.130 0.00 0.00 0.00 3.18
3809 13742 2.957402 AATGCTTCCACTCCTGTTCA 57.043 45.000 0.00 0.00 0.00 3.18
3810 13743 2.191128 ATGCTTCCACTCCTGTTCAC 57.809 50.000 0.00 0.00 0.00 3.18
3811 13744 0.249868 TGCTTCCACTCCTGTTCACG 60.250 55.000 0.00 0.00 0.00 4.35
3812 13745 0.249911 GCTTCCACTCCTGTTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
3813 13746 1.502231 CTTCCACTCCTGTTCACGTG 58.498 55.000 9.94 9.94 0.00 4.49
3814 13747 0.105964 TTCCACTCCTGTTCACGTGG 59.894 55.000 17.00 0.00 46.35 4.94
3815 13748 1.301716 CCACTCCTGTTCACGTGGG 60.302 63.158 17.00 9.07 42.40 4.61
3816 13749 1.445942 CACTCCTGTTCACGTGGGT 59.554 57.895 17.00 0.00 0.00 4.51
3817 13750 0.677288 CACTCCTGTTCACGTGGGTA 59.323 55.000 17.00 0.95 0.00 3.69
3818 13751 0.677842 ACTCCTGTTCACGTGGGTAC 59.322 55.000 17.00 12.01 0.00 3.34
3819 13752 0.966920 CTCCTGTTCACGTGGGTACT 59.033 55.000 17.00 0.00 0.00 2.73
3820 13753 1.343465 CTCCTGTTCACGTGGGTACTT 59.657 52.381 17.00 0.00 0.00 2.24
3821 13754 1.764134 TCCTGTTCACGTGGGTACTTT 59.236 47.619 17.00 0.00 0.00 2.66
3822 13755 2.171027 TCCTGTTCACGTGGGTACTTTT 59.829 45.455 17.00 0.00 0.00 2.27
3823 13756 2.289547 CCTGTTCACGTGGGTACTTTTG 59.710 50.000 17.00 4.62 0.00 2.44
3824 13757 1.671845 TGTTCACGTGGGTACTTTTGC 59.328 47.619 17.00 0.00 0.00 3.68
3825 13758 1.671845 GTTCACGTGGGTACTTTTGCA 59.328 47.619 17.00 0.00 0.00 4.08
3826 13759 1.588674 TCACGTGGGTACTTTTGCAG 58.411 50.000 17.00 0.00 0.00 4.41
3827 13760 1.134340 TCACGTGGGTACTTTTGCAGT 60.134 47.619 17.00 0.00 39.87 4.40
3828 13761 1.263217 CACGTGGGTACTTTTGCAGTC 59.737 52.381 7.95 0.00 36.88 3.51
3829 13762 1.134340 ACGTGGGTACTTTTGCAGTCA 60.134 47.619 0.00 0.00 36.88 3.41
3830 13763 1.263217 CGTGGGTACTTTTGCAGTCAC 59.737 52.381 0.00 0.00 36.88 3.67
3831 13764 2.572290 GTGGGTACTTTTGCAGTCACT 58.428 47.619 0.00 0.00 36.88 3.41
3832 13765 2.949644 GTGGGTACTTTTGCAGTCACTT 59.050 45.455 0.00 0.00 36.88 3.16
3833 13766 3.380320 GTGGGTACTTTTGCAGTCACTTT 59.620 43.478 0.00 0.00 36.88 2.66
3834 13767 4.020543 TGGGTACTTTTGCAGTCACTTTT 58.979 39.130 0.00 0.00 36.88 2.27
3835 13768 5.066764 GTGGGTACTTTTGCAGTCACTTTTA 59.933 40.000 0.00 0.00 36.88 1.52
3836 13769 5.066764 TGGGTACTTTTGCAGTCACTTTTAC 59.933 40.000 0.00 0.00 36.88 2.01
3837 13770 5.298527 GGGTACTTTTGCAGTCACTTTTACT 59.701 40.000 0.00 0.00 36.88 2.24
3838 13771 6.427974 GGTACTTTTGCAGTCACTTTTACTC 58.572 40.000 0.00 0.00 36.88 2.59
3839 13772 6.260271 GGTACTTTTGCAGTCACTTTTACTCT 59.740 38.462 0.00 0.00 36.88 3.24
3840 13773 6.759497 ACTTTTGCAGTCACTTTTACTCTT 57.241 33.333 0.00 0.00 0.00 2.85
3841 13774 7.158099 ACTTTTGCAGTCACTTTTACTCTTT 57.842 32.000 0.00 0.00 0.00 2.52
3842 13775 7.602753 ACTTTTGCAGTCACTTTTACTCTTTT 58.397 30.769 0.00 0.00 0.00 2.27
3843 13776 8.088365 ACTTTTGCAGTCACTTTTACTCTTTTT 58.912 29.630 0.00 0.00 0.00 1.94
3861 13794 3.518634 TTTTTCCTGTTCAAGTGGCAC 57.481 42.857 10.29 10.29 0.00 5.01
3862 13795 2.435372 TTTCCTGTTCAAGTGGCACT 57.565 45.000 15.88 15.88 0.00 4.40
3863 13796 2.435372 TTCCTGTTCAAGTGGCACTT 57.565 45.000 26.54 26.54 39.39 3.16
3864 13797 2.435372 TCCTGTTCAAGTGGCACTTT 57.565 45.000 29.32 12.79 36.03 2.66
3865 13798 2.733956 TCCTGTTCAAGTGGCACTTTT 58.266 42.857 29.32 8.21 36.03 2.27
3866 13799 2.687935 TCCTGTTCAAGTGGCACTTTTC 59.312 45.455 29.32 20.80 36.03 2.29
3867 13800 2.689983 CCTGTTCAAGTGGCACTTTTCT 59.310 45.455 29.32 6.97 36.03 2.52
3868 13801 3.131046 CCTGTTCAAGTGGCACTTTTCTT 59.869 43.478 29.32 6.55 36.03 2.52
3869 13802 4.338118 CCTGTTCAAGTGGCACTTTTCTTA 59.662 41.667 29.32 13.99 36.03 2.10
3870 13803 5.163561 CCTGTTCAAGTGGCACTTTTCTTAA 60.164 40.000 29.32 15.36 36.03 1.85
3871 13804 6.461509 CCTGTTCAAGTGGCACTTTTCTTAAT 60.462 38.462 29.32 4.09 36.03 1.40
3872 13805 7.255451 CCTGTTCAAGTGGCACTTTTCTTAATA 60.255 37.037 29.32 14.96 36.03 0.98
3873 13806 8.177119 TGTTCAAGTGGCACTTTTCTTAATAT 57.823 30.769 29.32 2.48 36.03 1.28
3874 13807 8.081633 TGTTCAAGTGGCACTTTTCTTAATATG 58.918 33.333 29.32 15.25 36.03 1.78
3875 13808 7.156876 TCAAGTGGCACTTTTCTTAATATGG 57.843 36.000 29.32 13.85 36.03 2.74
3876 13809 6.945435 TCAAGTGGCACTTTTCTTAATATGGA 59.055 34.615 29.32 15.84 36.03 3.41
3877 13810 7.615365 TCAAGTGGCACTTTTCTTAATATGGAT 59.385 33.333 29.32 0.49 36.03 3.41
3878 13811 7.961326 AGTGGCACTTTTCTTAATATGGATT 57.039 32.000 15.88 0.00 0.00 3.01
3879 13812 8.000780 AGTGGCACTTTTCTTAATATGGATTC 57.999 34.615 15.88 0.00 0.00 2.52
3880 13813 6.912591 GTGGCACTTTTCTTAATATGGATTCG 59.087 38.462 11.13 0.00 0.00 3.34
3881 13814 6.039270 TGGCACTTTTCTTAATATGGATTCGG 59.961 38.462 0.00 0.00 0.00 4.30
3882 13815 5.915196 GCACTTTTCTTAATATGGATTCGGC 59.085 40.000 0.00 0.00 0.00 5.54
3883 13816 6.459573 GCACTTTTCTTAATATGGATTCGGCA 60.460 38.462 0.00 0.00 0.00 5.69
3884 13817 7.134815 CACTTTTCTTAATATGGATTCGGCAG 58.865 38.462 0.00 0.00 0.00 4.85
3885 13818 6.263168 ACTTTTCTTAATATGGATTCGGCAGG 59.737 38.462 0.00 0.00 0.00 4.85
3886 13819 4.286297 TCTTAATATGGATTCGGCAGGG 57.714 45.455 0.00 0.00 0.00 4.45
3887 13820 2.489938 TAATATGGATTCGGCAGGGC 57.510 50.000 0.00 0.00 0.00 5.19
3888 13821 0.478072 AATATGGATTCGGCAGGGCA 59.522 50.000 0.00 0.00 0.00 5.36
3889 13822 0.478072 ATATGGATTCGGCAGGGCAA 59.522 50.000 0.00 0.00 0.00 4.52
3890 13823 0.257328 TATGGATTCGGCAGGGCAAA 59.743 50.000 0.00 0.00 0.00 3.68
3891 13824 1.322538 ATGGATTCGGCAGGGCAAAC 61.323 55.000 0.00 0.00 0.00 2.93
3892 13825 1.678970 GGATTCGGCAGGGCAAACT 60.679 57.895 0.00 0.00 0.00 2.66
3893 13826 0.393808 GGATTCGGCAGGGCAAACTA 60.394 55.000 0.00 0.00 0.00 2.24
3894 13827 1.680338 GATTCGGCAGGGCAAACTAT 58.320 50.000 0.00 0.00 0.00 2.12
3895 13828 2.024414 GATTCGGCAGGGCAAACTATT 58.976 47.619 0.00 0.00 0.00 1.73
3896 13829 1.917872 TTCGGCAGGGCAAACTATTT 58.082 45.000 0.00 0.00 0.00 1.40
3897 13830 1.917872 TCGGCAGGGCAAACTATTTT 58.082 45.000 0.00 0.00 0.00 1.82
3898 13831 1.816224 TCGGCAGGGCAAACTATTTTC 59.184 47.619 0.00 0.00 0.00 2.29
3899 13832 1.543802 CGGCAGGGCAAACTATTTTCA 59.456 47.619 0.00 0.00 0.00 2.69
3900 13833 2.029470 CGGCAGGGCAAACTATTTTCAA 60.029 45.455 0.00 0.00 0.00 2.69
3901 13834 3.553922 CGGCAGGGCAAACTATTTTCAAA 60.554 43.478 0.00 0.00 0.00 2.69
3902 13835 4.578871 GGCAGGGCAAACTATTTTCAAAT 58.421 39.130 0.00 0.00 0.00 2.32
3903 13836 5.623368 CGGCAGGGCAAACTATTTTCAAATA 60.623 40.000 0.00 0.00 0.00 1.40
3904 13837 6.348498 GGCAGGGCAAACTATTTTCAAATAT 58.652 36.000 0.00 0.00 31.03 1.28
3905 13838 6.258507 GGCAGGGCAAACTATTTTCAAATATG 59.741 38.462 0.00 0.00 31.03 1.78
3906 13839 6.238184 GCAGGGCAAACTATTTTCAAATATGC 60.238 38.462 7.43 7.43 35.34 3.14
3907 13840 6.258507 CAGGGCAAACTATTTTCAAATATGCC 59.741 38.462 18.94 18.94 45.26 4.40
3908 13841 6.603237 GGCAAACTATTTTCAAATATGCCC 57.397 37.500 17.48 6.61 42.84 5.36
3909 13842 5.234116 GGCAAACTATTTTCAAATATGCCCG 59.766 40.000 17.48 1.17 42.84 6.13
3910 13843 5.234116 GCAAACTATTTTCAAATATGCCCGG 59.766 40.000 0.00 0.00 32.37 5.73
3911 13844 4.584327 ACTATTTTCAAATATGCCCGGC 57.416 40.909 1.04 1.04 31.03 6.13
3912 13845 4.215109 ACTATTTTCAAATATGCCCGGCT 58.785 39.130 11.61 0.00 31.03 5.52
3913 13846 5.381757 ACTATTTTCAAATATGCCCGGCTA 58.618 37.500 11.61 0.96 31.03 3.93
3914 13847 4.584327 ATTTTCAAATATGCCCGGCTAC 57.416 40.909 11.61 0.00 0.00 3.58
3915 13848 3.290948 TTTCAAATATGCCCGGCTACT 57.709 42.857 11.61 0.00 0.00 2.57
3916 13849 3.290948 TTCAAATATGCCCGGCTACTT 57.709 42.857 11.61 0.00 0.00 2.24
3917 13850 2.571212 TCAAATATGCCCGGCTACTTG 58.429 47.619 11.61 9.00 0.00 3.16
3918 13851 1.608590 CAAATATGCCCGGCTACTTGG 59.391 52.381 11.61 0.00 0.00 3.61
3924 13857 2.183555 CCGGCTACTTGGGACGTC 59.816 66.667 7.13 7.13 0.00 4.34
3925 13858 2.348888 CCGGCTACTTGGGACGTCT 61.349 63.158 16.46 0.00 0.00 4.18
3926 13859 1.033746 CCGGCTACTTGGGACGTCTA 61.034 60.000 16.46 1.96 0.00 2.59
3927 13860 0.381089 CGGCTACTTGGGACGTCTAG 59.619 60.000 16.46 12.61 0.00 2.43
3928 13861 1.472188 GGCTACTTGGGACGTCTAGT 58.528 55.000 16.46 17.32 0.00 2.57
3929 13862 1.134560 GGCTACTTGGGACGTCTAGTG 59.865 57.143 16.46 11.48 0.00 2.74
3930 13863 2.089980 GCTACTTGGGACGTCTAGTGA 58.910 52.381 16.46 5.60 0.00 3.41
3931 13864 2.097791 GCTACTTGGGACGTCTAGTGAG 59.902 54.545 16.46 13.61 0.00 3.51
3932 13865 2.289592 ACTTGGGACGTCTAGTGAGT 57.710 50.000 16.46 9.68 0.00 3.41
3933 13866 3.430042 ACTTGGGACGTCTAGTGAGTA 57.570 47.619 16.46 0.00 0.00 2.59
3934 13867 3.759581 ACTTGGGACGTCTAGTGAGTAA 58.240 45.455 16.46 0.00 0.00 2.24
3935 13868 4.147321 ACTTGGGACGTCTAGTGAGTAAA 58.853 43.478 16.46 0.00 0.00 2.01
3936 13869 4.771054 ACTTGGGACGTCTAGTGAGTAAAT 59.229 41.667 16.46 0.00 0.00 1.40
3937 13870 4.713824 TGGGACGTCTAGTGAGTAAATG 57.286 45.455 16.46 0.00 0.00 2.32
3938 13871 3.446161 TGGGACGTCTAGTGAGTAAATGG 59.554 47.826 16.46 0.00 0.00 3.16
3939 13872 3.445857 GGACGTCTAGTGAGTAAATGGC 58.554 50.000 16.46 0.00 0.00 4.40
3940 13873 3.445857 GACGTCTAGTGAGTAAATGGCC 58.554 50.000 8.70 0.00 0.00 5.36
3941 13874 2.829720 ACGTCTAGTGAGTAAATGGCCA 59.170 45.455 8.56 8.56 0.00 5.36
3942 13875 3.187700 CGTCTAGTGAGTAAATGGCCAC 58.812 50.000 8.16 0.00 0.00 5.01
3943 13876 3.119101 CGTCTAGTGAGTAAATGGCCACT 60.119 47.826 8.16 0.00 41.98 4.00
3944 13877 4.620803 CGTCTAGTGAGTAAATGGCCACTT 60.621 45.833 8.16 5.94 40.07 3.16
3945 13878 4.631813 GTCTAGTGAGTAAATGGCCACTTG 59.368 45.833 8.16 0.00 40.07 3.16
3946 13879 2.162681 AGTGAGTAAATGGCCACTTGC 58.837 47.619 8.16 7.45 36.57 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.617530 GCGATGCGGTATCTAGGATTTACA 60.618 45.833 4.58 0.00 33.44 2.41
35 36 0.251209 AGGCGATGCGGTATCTAGGA 60.251 55.000 4.58 0.00 33.44 2.94
84 86 3.896888 TCTCCTAAACCCTTGAACGTGTA 59.103 43.478 0.00 0.00 0.00 2.90
133 152 4.916041 ATCGATTGTGGATGGGATACAT 57.084 40.909 0.00 0.00 44.18 2.29
169 188 4.133013 TCGAAGAGGTAAAACCCTATGC 57.867 45.455 0.00 0.00 39.75 3.14
199 218 3.293337 GGACACAGTTTTACCCAGGTTT 58.707 45.455 0.00 0.00 0.00 3.27
221 240 6.820152 GGTACGATGGTTAACAGGAAGTAAAT 59.180 38.462 8.10 0.00 0.00 1.40
326 345 3.049674 CCTTCAGGCGCGCTTCAA 61.050 61.111 32.29 16.59 0.00 2.69
356 4548 0.617820 ATGGGTCGACACTTAGGGCT 60.618 55.000 20.37 0.00 0.00 5.19
403 4595 2.069273 CTGTCATCTTTTCCGCTTCGT 58.931 47.619 0.00 0.00 0.00 3.85
413 4605 4.712476 AGTCTTGCACTTCTGTCATCTTT 58.288 39.130 0.00 0.00 26.56 2.52
427 4619 3.565482 GTGAGTGGATTTGAAGTCTTGCA 59.435 43.478 0.00 0.00 0.00 4.08
558 4751 5.706369 GGAGAGACTTAGACTACAAGACACA 59.294 44.000 0.00 0.00 0.00 3.72
610 4803 1.751351 CCTGTACCGATCTCAGCTTCA 59.249 52.381 0.00 0.00 0.00 3.02
617 4810 6.827586 ATATTTCTCTCCTGTACCGATCTC 57.172 41.667 0.00 0.00 0.00 2.75
644 4837 6.960542 TCCTTAGGTGAGAAATAGAGAAACCT 59.039 38.462 0.00 0.00 39.75 3.50
658 4851 3.244911 ACCCACAATGTTCCTTAGGTGAG 60.245 47.826 0.00 0.00 0.00 3.51
695 4888 5.009510 TGACGAAATGACCAATGAACAATGT 59.990 36.000 0.00 0.00 0.00 2.71
733 4927 6.807230 TGTTTTCTTAAGCGTGTTTGCTAAAA 59.193 30.769 0.00 0.00 46.60 1.52
762 4956 4.260985 ACACAGATTGTCACAGTTCAACA 58.739 39.130 0.00 0.00 29.79 3.33
763 4957 4.882671 ACACAGATTGTCACAGTTCAAC 57.117 40.909 0.00 0.00 29.79 3.18
774 4968 3.544684 TGTTCAGCTTGACACAGATTGT 58.455 40.909 0.00 0.00 43.10 2.71
775 4969 4.761235 ATGTTCAGCTTGACACAGATTG 57.239 40.909 1.24 0.00 0.00 2.67
776 4970 6.000219 ACTAATGTTCAGCTTGACACAGATT 59.000 36.000 12.89 3.71 0.00 2.40
777 4971 5.555017 ACTAATGTTCAGCTTGACACAGAT 58.445 37.500 12.89 1.41 0.00 2.90
778 4972 4.960938 ACTAATGTTCAGCTTGACACAGA 58.039 39.130 12.89 0.00 0.00 3.41
779 4973 6.619446 GCTTACTAATGTTCAGCTTGACACAG 60.619 42.308 1.24 5.06 31.99 3.66
780 4974 5.179368 GCTTACTAATGTTCAGCTTGACACA 59.821 40.000 1.24 3.46 31.99 3.72
781 4975 5.179368 TGCTTACTAATGTTCAGCTTGACAC 59.821 40.000 1.24 0.00 34.33 3.67
782 4976 5.304778 TGCTTACTAATGTTCAGCTTGACA 58.695 37.500 1.69 1.69 34.33 3.58
783 4977 5.639506 TCTGCTTACTAATGTTCAGCTTGAC 59.360 40.000 0.00 0.00 34.33 3.18
784 4978 5.793817 TCTGCTTACTAATGTTCAGCTTGA 58.206 37.500 0.00 0.00 34.33 3.02
785 4979 6.314648 TCATCTGCTTACTAATGTTCAGCTTG 59.685 38.462 0.00 0.00 34.33 4.01
786 4980 6.409704 TCATCTGCTTACTAATGTTCAGCTT 58.590 36.000 0.00 0.00 34.33 3.74
787 4981 5.982356 TCATCTGCTTACTAATGTTCAGCT 58.018 37.500 0.00 0.00 34.33 4.24
788 4982 5.814705 ACTCATCTGCTTACTAATGTTCAGC 59.185 40.000 0.00 0.00 34.01 4.26
789 4983 7.547019 TCAACTCATCTGCTTACTAATGTTCAG 59.453 37.037 0.00 0.00 0.00 3.02
790 4984 7.331934 GTCAACTCATCTGCTTACTAATGTTCA 59.668 37.037 0.00 0.00 0.00 3.18
861 5085 4.547532 GTTCTCGCAGAAAGTAGTCAAGA 58.452 43.478 0.96 0.00 35.75 3.02
881 5105 2.629656 GCTGGTCTTGCATGGCGTT 61.630 57.895 0.00 0.00 0.00 4.84
890 5114 0.595095 GCTTGACTTGGCTGGTCTTG 59.405 55.000 10.58 5.81 35.04 3.02
971 8937 2.669569 TTGGTTGCTCTGCTCCGC 60.670 61.111 0.00 0.00 0.00 5.54
1374 10681 2.652590 GACGAGAAGAGGTAAGGGCTA 58.347 52.381 0.00 0.00 0.00 3.93
1913 11255 6.449635 TTGTAACAGAGCACAACTGAAATT 57.550 33.333 0.00 0.00 38.55 1.82
1961 11736 4.043750 TCAGTTTGCAAAGCGATTTCAAG 58.956 39.130 13.26 0.00 29.71 3.02
2000 11775 4.706962 GCAGGGGTATTCATCTTTCAGTTT 59.293 41.667 0.00 0.00 0.00 2.66
2011 11792 3.348347 GATCCCGTAGCAGGGGTATTCA 61.348 54.545 11.32 0.00 46.98 2.57
2020 11801 0.108186 TTGTGCAGATCCCGTAGCAG 60.108 55.000 0.00 0.00 37.72 4.24
2072 11861 1.899437 GCATCTCCACTTGTCCCGGA 61.899 60.000 0.73 0.00 0.00 5.14
2200 12092 5.544176 ACATCATCTGTAAATAGGATCCCGT 59.456 40.000 8.55 0.00 35.91 5.28
2201 12093 6.042638 ACATCATCTGTAAATAGGATCCCG 57.957 41.667 8.55 0.00 35.91 5.14
2203 12095 9.213799 GAAGAACATCATCTGTAAATAGGATCC 57.786 37.037 2.48 2.48 36.98 3.36
2244 12139 7.324354 TGACACATTGGATACTTGATCATTG 57.676 36.000 0.00 0.00 36.12 2.82
2258 12153 4.141642 TGACTCCTGGATATGACACATTGG 60.142 45.833 0.00 0.00 0.00 3.16
2268 12163 2.402564 CCCACACTGACTCCTGGATAT 58.597 52.381 0.00 0.00 0.00 1.63
2269 12164 1.622449 CCCCACACTGACTCCTGGATA 60.622 57.143 0.00 0.00 0.00 2.59
2300 12197 2.426522 GCCAGAAGCACATGAACACTA 58.573 47.619 0.00 0.00 42.97 2.74
2434 12342 4.843728 TCTGAGAATATTTTGAACCCGCT 58.156 39.130 0.00 0.00 0.00 5.52
2564 12476 5.190330 TCCATCATCTTGGACTTCTTGATGA 59.810 40.000 11.23 0.00 44.69 2.92
2631 12544 0.250989 TCCGGTGGTTGATTTGGGAC 60.251 55.000 0.00 0.00 0.00 4.46
2637 12550 0.947180 CGACGTTCCGGTGGTTGATT 60.947 55.000 0.00 0.00 0.00 2.57
2736 12649 1.227527 CTCGCGGCCATGGATGTAA 60.228 57.895 18.40 0.00 0.00 2.41
2793 12706 4.587189 GCCGACTCCGCCGCTATT 62.587 66.667 0.00 0.00 0.00 1.73
2812 12725 2.100631 GCATGTACGACAGCGCCTT 61.101 57.895 2.29 0.00 42.48 4.35
2874 12787 0.463295 CATCGAGCAGGATGTTGGCT 60.463 55.000 8.41 0.00 39.15 4.75
2916 12829 2.183300 TTCGATGCCCCGAAGTCG 59.817 61.111 6.23 0.00 42.74 4.18
3193 13107 1.152525 TCTCGGGGCCCATCTCTAC 60.153 63.158 26.86 2.37 0.00 2.59
3211 13125 2.490991 GTGCCTAACTTCTTCCAACGT 58.509 47.619 0.00 0.00 0.00 3.99
3271 13185 1.000394 TGCAACTTCCTTCATCGACGA 60.000 47.619 0.00 0.00 0.00 4.20
3351 13271 4.115199 CTTTGCCCCTCCTCCGGG 62.115 72.222 0.00 0.00 44.20 5.73
3387 13307 2.238942 TCACATCACGTTGTTGCTCT 57.761 45.000 0.00 0.00 0.00 4.09
3431 13360 1.340405 TGCCCTCTTCAAGATTGAGCC 60.340 52.381 0.00 0.00 38.61 4.70
3435 13364 3.942829 TGTACTGCCCTCTTCAAGATTG 58.057 45.455 0.00 0.00 0.00 2.67
3436 13365 4.851639 ATGTACTGCCCTCTTCAAGATT 57.148 40.909 0.00 0.00 0.00 2.40
3483 13412 6.891388 TCTACAAACTAAAAACCCTCACAGA 58.109 36.000 0.00 0.00 0.00 3.41
3488 13418 7.801783 CGAACAATCTACAAACTAAAAACCCTC 59.198 37.037 0.00 0.00 0.00 4.30
3514 13444 4.590850 AAAAGGAGTCCAGCAAACATTC 57.409 40.909 12.86 0.00 0.00 2.67
3523 13453 4.448060 GTGTCGACTTTAAAAGGAGTCCAG 59.552 45.833 17.92 0.74 39.23 3.86
3593 13526 4.515028 ATGAGCATTCCTTTCAGATGGA 57.485 40.909 0.00 0.00 0.00 3.41
3594 13527 6.095860 TGTTAATGAGCATTCCTTTCAGATGG 59.904 38.462 0.00 0.00 32.50 3.51
3596 13529 7.707624 TTGTTAATGAGCATTCCTTTCAGAT 57.292 32.000 0.00 0.00 32.50 2.90
3597 13530 7.523293 TTTGTTAATGAGCATTCCTTTCAGA 57.477 32.000 0.00 0.00 32.50 3.27
3601 13534 8.181904 TCTCTTTTGTTAATGAGCATTCCTTT 57.818 30.769 0.00 0.00 36.18 3.11
3602 13535 7.765695 TCTCTTTTGTTAATGAGCATTCCTT 57.234 32.000 0.00 0.00 36.18 3.36
3603 13536 7.765695 TTCTCTTTTGTTAATGAGCATTCCT 57.234 32.000 0.00 0.00 36.18 3.36
3604 13537 8.866956 CATTTCTCTTTTGTTAATGAGCATTCC 58.133 33.333 0.00 0.00 36.18 3.01
3605 13538 8.378421 GCATTTCTCTTTTGTTAATGAGCATTC 58.622 33.333 0.00 0.00 36.18 2.67
3606 13539 7.874016 TGCATTTCTCTTTTGTTAATGAGCATT 59.126 29.630 0.97 0.97 36.18 3.56
3607 13540 7.380536 TGCATTTCTCTTTTGTTAATGAGCAT 58.619 30.769 0.00 0.00 36.18 3.79
3608 13541 6.747125 TGCATTTCTCTTTTGTTAATGAGCA 58.253 32.000 0.00 0.00 36.18 4.26
3610 13543 8.807667 AGTTGCATTTCTCTTTTGTTAATGAG 57.192 30.769 0.00 0.00 37.06 2.90
3654 13587 4.638865 CCCTACACCTTTTTAGCATGGTAC 59.361 45.833 3.60 0.00 0.00 3.34
3656 13589 3.563479 CCCCTACACCTTTTTAGCATGGT 60.563 47.826 1.62 1.62 0.00 3.55
3657 13590 3.023832 CCCCTACACCTTTTTAGCATGG 58.976 50.000 0.00 0.00 0.00 3.66
3659 13592 3.332485 TGTCCCCTACACCTTTTTAGCAT 59.668 43.478 0.00 0.00 31.43 3.79
3660 13593 2.712087 TGTCCCCTACACCTTTTTAGCA 59.288 45.455 0.00 0.00 31.43 3.49
3661 13594 3.428413 TGTCCCCTACACCTTTTTAGC 57.572 47.619 0.00 0.00 31.43 3.09
3662 13595 3.694566 GCATGTCCCCTACACCTTTTTAG 59.305 47.826 0.00 0.00 42.09 1.85
3663 13596 3.332485 AGCATGTCCCCTACACCTTTTTA 59.668 43.478 0.00 0.00 42.09 1.52
3664 13597 2.110011 AGCATGTCCCCTACACCTTTTT 59.890 45.455 0.00 0.00 42.09 1.94
3665 13598 1.710809 AGCATGTCCCCTACACCTTTT 59.289 47.619 0.00 0.00 42.09 2.27
3666 13599 1.282157 GAGCATGTCCCCTACACCTTT 59.718 52.381 0.00 0.00 42.09 3.11
3667 13600 0.912486 GAGCATGTCCCCTACACCTT 59.088 55.000 0.00 0.00 42.09 3.50
3668 13601 0.983378 GGAGCATGTCCCCTACACCT 60.983 60.000 0.00 0.00 42.09 4.00
3669 13602 1.527370 GGAGCATGTCCCCTACACC 59.473 63.158 0.00 0.00 42.09 4.16
3678 13611 2.497675 TGGTACTTCTGAGGAGCATGTC 59.502 50.000 0.00 0.00 39.26 3.06
3679 13612 2.540383 TGGTACTTCTGAGGAGCATGT 58.460 47.619 0.00 0.00 39.26 3.21
3683 13616 2.950309 TCGTATGGTACTTCTGAGGAGC 59.050 50.000 0.00 0.00 34.69 4.70
3684 13617 3.945921 TGTCGTATGGTACTTCTGAGGAG 59.054 47.826 0.00 0.00 0.00 3.69
3685 13618 3.945921 CTGTCGTATGGTACTTCTGAGGA 59.054 47.826 0.00 0.00 0.00 3.71
3686 13619 3.945921 TCTGTCGTATGGTACTTCTGAGG 59.054 47.826 0.00 0.00 0.00 3.86
3687 13620 4.636648 AGTCTGTCGTATGGTACTTCTGAG 59.363 45.833 0.00 0.00 0.00 3.35
3688 13621 4.586884 AGTCTGTCGTATGGTACTTCTGA 58.413 43.478 0.00 0.00 0.00 3.27
3689 13622 4.636648 AGAGTCTGTCGTATGGTACTTCTG 59.363 45.833 0.00 0.00 0.00 3.02
3690 13623 4.846040 AGAGTCTGTCGTATGGTACTTCT 58.154 43.478 0.00 0.00 0.00 2.85
3691 13624 5.564048 AAGAGTCTGTCGTATGGTACTTC 57.436 43.478 0.00 0.00 0.00 3.01
3692 13625 7.338703 TCATTAAGAGTCTGTCGTATGGTACTT 59.661 37.037 0.00 0.00 0.00 2.24
3693 13626 6.827251 TCATTAAGAGTCTGTCGTATGGTACT 59.173 38.462 0.00 0.00 0.00 2.73
3694 13627 7.024340 TCATTAAGAGTCTGTCGTATGGTAC 57.976 40.000 0.00 0.00 0.00 3.34
3695 13628 7.501225 TCATCATTAAGAGTCTGTCGTATGGTA 59.499 37.037 0.00 0.00 0.00 3.25
3696 13629 6.321435 TCATCATTAAGAGTCTGTCGTATGGT 59.679 38.462 0.00 0.00 0.00 3.55
3697 13630 6.739112 TCATCATTAAGAGTCTGTCGTATGG 58.261 40.000 0.00 0.00 0.00 2.74
3698 13631 8.634475 TTTCATCATTAAGAGTCTGTCGTATG 57.366 34.615 0.00 0.00 0.00 2.39
3699 13632 9.088512 GTTTTCATCATTAAGAGTCTGTCGTAT 57.911 33.333 0.00 0.00 0.00 3.06
3700 13633 8.085909 TGTTTTCATCATTAAGAGTCTGTCGTA 58.914 33.333 0.00 0.00 0.00 3.43
3701 13634 6.929049 TGTTTTCATCATTAAGAGTCTGTCGT 59.071 34.615 0.00 0.00 0.00 4.34
3702 13635 7.351414 TGTTTTCATCATTAAGAGTCTGTCG 57.649 36.000 0.00 0.00 0.00 4.35
3716 13649 9.571810 CATCGGAATTAAGATTTGTTTTCATCA 57.428 29.630 0.00 0.00 0.00 3.07
3717 13650 9.573133 ACATCGGAATTAAGATTTGTTTTCATC 57.427 29.630 0.00 0.00 0.00 2.92
3718 13651 9.927668 AACATCGGAATTAAGATTTGTTTTCAT 57.072 25.926 0.00 0.00 0.00 2.57
3719 13652 9.757227 AAACATCGGAATTAAGATTTGTTTTCA 57.243 25.926 7.80 0.00 32.58 2.69
3721 13654 9.757227 TCAAACATCGGAATTAAGATTTGTTTT 57.243 25.926 9.68 0.68 33.48 2.43
3722 13655 9.927668 ATCAAACATCGGAATTAAGATTTGTTT 57.072 25.926 7.80 7.80 34.90 2.83
3723 13656 9.927668 AATCAAACATCGGAATTAAGATTTGTT 57.072 25.926 0.00 0.00 28.61 2.83
3724 13657 9.927668 AAATCAAACATCGGAATTAAGATTTGT 57.072 25.926 0.00 0.00 33.44 2.83
3726 13659 9.927668 ACAAATCAAACATCGGAATTAAGATTT 57.072 25.926 0.00 0.00 34.57 2.17
3730 13663 9.840427 ACTTACAAATCAAACATCGGAATTAAG 57.160 29.630 0.00 0.00 0.00 1.85
3734 13667 9.787532 CATAACTTACAAATCAAACATCGGAAT 57.212 29.630 0.00 0.00 0.00 3.01
3735 13668 8.240682 CCATAACTTACAAATCAAACATCGGAA 58.759 33.333 0.00 0.00 0.00 4.30
3736 13669 7.627513 GCCATAACTTACAAATCAAACATCGGA 60.628 37.037 0.00 0.00 0.00 4.55
3737 13670 6.472163 GCCATAACTTACAAATCAAACATCGG 59.528 38.462 0.00 0.00 0.00 4.18
3738 13671 7.250569 AGCCATAACTTACAAATCAAACATCG 58.749 34.615 0.00 0.00 0.00 3.84
3739 13672 8.986477 AAGCCATAACTTACAAATCAAACATC 57.014 30.769 0.00 0.00 0.00 3.06
3740 13673 9.777297 AAAAGCCATAACTTACAAATCAAACAT 57.223 25.926 0.00 0.00 0.00 2.71
3741 13674 9.606631 AAAAAGCCATAACTTACAAATCAAACA 57.393 25.926 0.00 0.00 0.00 2.83
3777 13710 8.037166 GGAGTGGAAGCATTTAATTCAGATTTT 58.963 33.333 0.00 0.00 0.00 1.82
3778 13711 7.398332 AGGAGTGGAAGCATTTAATTCAGATTT 59.602 33.333 0.00 0.00 0.00 2.17
3779 13712 6.894103 AGGAGTGGAAGCATTTAATTCAGATT 59.106 34.615 0.00 0.00 0.00 2.40
3780 13713 6.320672 CAGGAGTGGAAGCATTTAATTCAGAT 59.679 38.462 0.00 0.00 0.00 2.90
3781 13714 5.649395 CAGGAGTGGAAGCATTTAATTCAGA 59.351 40.000 0.00 0.00 0.00 3.27
3782 13715 5.416952 ACAGGAGTGGAAGCATTTAATTCAG 59.583 40.000 0.00 0.00 0.00 3.02
3783 13716 5.324409 ACAGGAGTGGAAGCATTTAATTCA 58.676 37.500 0.00 0.00 0.00 2.57
3784 13717 5.904362 ACAGGAGTGGAAGCATTTAATTC 57.096 39.130 0.00 0.00 0.00 2.17
3785 13718 5.774690 TGAACAGGAGTGGAAGCATTTAATT 59.225 36.000 0.00 0.00 0.00 1.40
3786 13719 5.183904 GTGAACAGGAGTGGAAGCATTTAAT 59.816 40.000 0.00 0.00 0.00 1.40
3787 13720 4.518970 GTGAACAGGAGTGGAAGCATTTAA 59.481 41.667 0.00 0.00 0.00 1.52
3788 13721 4.072131 GTGAACAGGAGTGGAAGCATTTA 58.928 43.478 0.00 0.00 0.00 1.40
3789 13722 2.887152 GTGAACAGGAGTGGAAGCATTT 59.113 45.455 0.00 0.00 0.00 2.32
3790 13723 2.508526 GTGAACAGGAGTGGAAGCATT 58.491 47.619 0.00 0.00 0.00 3.56
3791 13724 1.609061 CGTGAACAGGAGTGGAAGCAT 60.609 52.381 0.00 0.00 0.00 3.79
3792 13725 0.249868 CGTGAACAGGAGTGGAAGCA 60.250 55.000 0.00 0.00 0.00 3.91
3793 13726 0.249911 ACGTGAACAGGAGTGGAAGC 60.250 55.000 0.00 0.00 0.00 3.86
3794 13727 1.502231 CACGTGAACAGGAGTGGAAG 58.498 55.000 10.90 0.00 0.00 3.46
3795 13728 3.678921 CACGTGAACAGGAGTGGAA 57.321 52.632 10.90 0.00 0.00 3.53
3797 13730 4.361253 CCACGTGAACAGGAGTGG 57.639 61.111 19.30 0.00 46.52 4.00
3798 13731 0.677288 TACCCACGTGAACAGGAGTG 59.323 55.000 19.30 0.00 0.00 3.51
3799 13732 0.677842 GTACCCACGTGAACAGGAGT 59.322 55.000 19.30 5.07 0.00 3.85
3800 13733 0.966920 AGTACCCACGTGAACAGGAG 59.033 55.000 19.30 0.00 0.00 3.69
3801 13734 1.416243 AAGTACCCACGTGAACAGGA 58.584 50.000 19.30 0.00 0.00 3.86
3802 13735 2.249844 AAAGTACCCACGTGAACAGG 57.750 50.000 19.30 12.27 0.00 4.00
3803 13736 2.286772 GCAAAAGTACCCACGTGAACAG 60.287 50.000 19.30 5.19 0.00 3.16
3804 13737 1.671845 GCAAAAGTACCCACGTGAACA 59.328 47.619 19.30 0.00 0.00 3.18
3805 13738 1.671845 TGCAAAAGTACCCACGTGAAC 59.328 47.619 19.30 12.09 0.00 3.18
3806 13739 1.944024 CTGCAAAAGTACCCACGTGAA 59.056 47.619 19.30 0.00 0.00 3.18
3807 13740 1.134340 ACTGCAAAAGTACCCACGTGA 60.134 47.619 19.30 0.00 37.36 4.35
3808 13741 1.263217 GACTGCAAAAGTACCCACGTG 59.737 52.381 9.08 9.08 40.07 4.49
3809 13742 1.134340 TGACTGCAAAAGTACCCACGT 60.134 47.619 0.00 0.00 40.07 4.49
3810 13743 1.263217 GTGACTGCAAAAGTACCCACG 59.737 52.381 0.00 0.00 40.07 4.94
3811 13744 2.572290 AGTGACTGCAAAAGTACCCAC 58.428 47.619 0.00 0.00 40.07 4.61
3812 13745 3.290948 AAGTGACTGCAAAAGTACCCA 57.709 42.857 0.00 0.00 40.07 4.51
3813 13746 4.649088 AAAAGTGACTGCAAAAGTACCC 57.351 40.909 0.00 0.00 40.07 3.69
3814 13747 6.260271 AGAGTAAAAGTGACTGCAAAAGTACC 59.740 38.462 0.00 0.00 40.07 3.34
3815 13748 7.247929 AGAGTAAAAGTGACTGCAAAAGTAC 57.752 36.000 0.00 0.00 40.07 2.73
3816 13749 7.859325 AAGAGTAAAAGTGACTGCAAAAGTA 57.141 32.000 0.00 0.00 40.07 2.24
3817 13750 6.759497 AAGAGTAAAAGTGACTGCAAAAGT 57.241 33.333 0.00 0.00 43.85 2.66
3818 13751 8.466086 AAAAAGAGTAAAAGTGACTGCAAAAG 57.534 30.769 0.00 0.00 0.00 2.27
3841 13774 3.096092 AGTGCCACTTGAACAGGAAAAA 58.904 40.909 0.00 0.00 0.00 1.94
3842 13775 2.733956 AGTGCCACTTGAACAGGAAAA 58.266 42.857 0.00 0.00 0.00 2.29
3843 13776 2.435372 AGTGCCACTTGAACAGGAAA 57.565 45.000 0.00 0.00 0.00 3.13
3844 13777 2.435372 AAGTGCCACTTGAACAGGAA 57.565 45.000 9.77 0.00 37.00 3.36
3845 13778 2.435372 AAAGTGCCACTTGAACAGGA 57.565 45.000 11.51 0.00 38.66 3.86
3846 13779 2.689983 AGAAAAGTGCCACTTGAACAGG 59.310 45.455 11.51 0.00 38.66 4.00
3847 13780 4.376340 AAGAAAAGTGCCACTTGAACAG 57.624 40.909 11.51 0.00 38.66 3.16
3848 13781 5.906113 TTAAGAAAAGTGCCACTTGAACA 57.094 34.783 11.51 0.00 38.66 3.18
3849 13782 7.542130 CCATATTAAGAAAAGTGCCACTTGAAC 59.458 37.037 11.51 5.90 38.66 3.18
3850 13783 7.450014 TCCATATTAAGAAAAGTGCCACTTGAA 59.550 33.333 11.51 1.69 38.66 2.69
3851 13784 6.945435 TCCATATTAAGAAAAGTGCCACTTGA 59.055 34.615 11.51 0.00 38.66 3.02
3852 13785 7.156876 TCCATATTAAGAAAAGTGCCACTTG 57.843 36.000 11.51 0.00 38.66 3.16
3853 13786 7.961326 ATCCATATTAAGAAAAGTGCCACTT 57.039 32.000 3.74 3.74 40.80 3.16
3854 13787 7.201732 CGAATCCATATTAAGAAAAGTGCCACT 60.202 37.037 0.00 0.00 0.00 4.00
3855 13788 6.912591 CGAATCCATATTAAGAAAAGTGCCAC 59.087 38.462 0.00 0.00 0.00 5.01
3856 13789 6.039270 CCGAATCCATATTAAGAAAAGTGCCA 59.961 38.462 0.00 0.00 0.00 4.92
3857 13790 6.438763 CCGAATCCATATTAAGAAAAGTGCC 58.561 40.000 0.00 0.00 0.00 5.01
3858 13791 5.915196 GCCGAATCCATATTAAGAAAAGTGC 59.085 40.000 0.00 0.00 0.00 4.40
3859 13792 7.026631 TGCCGAATCCATATTAAGAAAAGTG 57.973 36.000 0.00 0.00 0.00 3.16
3860 13793 6.263168 CCTGCCGAATCCATATTAAGAAAAGT 59.737 38.462 0.00 0.00 0.00 2.66
3861 13794 6.294176 CCCTGCCGAATCCATATTAAGAAAAG 60.294 42.308 0.00 0.00 0.00 2.27
3862 13795 5.534654 CCCTGCCGAATCCATATTAAGAAAA 59.465 40.000 0.00 0.00 0.00 2.29
3863 13796 5.070001 CCCTGCCGAATCCATATTAAGAAA 58.930 41.667 0.00 0.00 0.00 2.52
3864 13797 4.651778 CCCTGCCGAATCCATATTAAGAA 58.348 43.478 0.00 0.00 0.00 2.52
3865 13798 3.559171 GCCCTGCCGAATCCATATTAAGA 60.559 47.826 0.00 0.00 0.00 2.10
3866 13799 2.749621 GCCCTGCCGAATCCATATTAAG 59.250 50.000 0.00 0.00 0.00 1.85
3867 13800 2.107378 TGCCCTGCCGAATCCATATTAA 59.893 45.455 0.00 0.00 0.00 1.40
3868 13801 1.702401 TGCCCTGCCGAATCCATATTA 59.298 47.619 0.00 0.00 0.00 0.98
3869 13802 0.478072 TGCCCTGCCGAATCCATATT 59.522 50.000 0.00 0.00 0.00 1.28
3870 13803 0.478072 TTGCCCTGCCGAATCCATAT 59.522 50.000 0.00 0.00 0.00 1.78
3871 13804 0.257328 TTTGCCCTGCCGAATCCATA 59.743 50.000 0.00 0.00 0.00 2.74
3872 13805 1.000233 TTTGCCCTGCCGAATCCAT 60.000 52.632 0.00 0.00 0.00 3.41
3873 13806 1.976474 GTTTGCCCTGCCGAATCCA 60.976 57.895 0.00 0.00 0.00 3.41
3874 13807 0.393808 TAGTTTGCCCTGCCGAATCC 60.394 55.000 0.00 0.00 0.00 3.01
3875 13808 1.680338 ATAGTTTGCCCTGCCGAATC 58.320 50.000 0.00 0.00 0.00 2.52
3876 13809 2.143876 AATAGTTTGCCCTGCCGAAT 57.856 45.000 0.00 0.00 0.00 3.34
3877 13810 1.917872 AAATAGTTTGCCCTGCCGAA 58.082 45.000 0.00 0.00 0.00 4.30
3878 13811 1.816224 GAAAATAGTTTGCCCTGCCGA 59.184 47.619 0.00 0.00 0.00 5.54
3879 13812 1.543802 TGAAAATAGTTTGCCCTGCCG 59.456 47.619 0.00 0.00 0.00 5.69
3880 13813 3.676291 TTGAAAATAGTTTGCCCTGCC 57.324 42.857 0.00 0.00 0.00 4.85
3881 13814 6.238184 GCATATTTGAAAATAGTTTGCCCTGC 60.238 38.462 0.00 4.33 34.62 4.85
3882 13815 6.258507 GGCATATTTGAAAATAGTTTGCCCTG 59.741 38.462 19.34 6.21 42.84 4.45
3883 13816 6.348498 GGCATATTTGAAAATAGTTTGCCCT 58.652 36.000 19.34 0.00 42.84 5.19
3884 13817 6.603237 GGCATATTTGAAAATAGTTTGCCC 57.397 37.500 19.34 8.70 42.84 5.36
3885 13818 5.234116 CGGGCATATTTGAAAATAGTTTGCC 59.766 40.000 20.73 20.73 45.26 4.52
3886 13819 5.234116 CCGGGCATATTTGAAAATAGTTTGC 59.766 40.000 0.00 9.73 35.34 3.68
3887 13820 5.234116 GCCGGGCATATTTGAAAATAGTTTG 59.766 40.000 15.62 0.00 34.62 2.93
3888 13821 5.128663 AGCCGGGCATATTTGAAAATAGTTT 59.871 36.000 23.09 0.00 34.62 2.66
3889 13822 4.649218 AGCCGGGCATATTTGAAAATAGTT 59.351 37.500 23.09 0.00 34.62 2.24
3890 13823 4.215109 AGCCGGGCATATTTGAAAATAGT 58.785 39.130 23.09 0.00 34.62 2.12
3891 13824 4.853924 AGCCGGGCATATTTGAAAATAG 57.146 40.909 23.09 0.00 34.62 1.73
3892 13825 5.381757 AGTAGCCGGGCATATTTGAAAATA 58.618 37.500 23.09 0.00 35.52 1.40
3893 13826 4.215109 AGTAGCCGGGCATATTTGAAAAT 58.785 39.130 23.09 0.00 0.00 1.82
3894 13827 3.626930 AGTAGCCGGGCATATTTGAAAA 58.373 40.909 23.09 0.00 0.00 2.29
3895 13828 3.290948 AGTAGCCGGGCATATTTGAAA 57.709 42.857 23.09 0.00 0.00 2.69
3896 13829 2.948979 CAAGTAGCCGGGCATATTTGAA 59.051 45.455 23.09 0.00 0.00 2.69
3897 13830 2.571212 CAAGTAGCCGGGCATATTTGA 58.429 47.619 23.09 0.00 0.00 2.69
3898 13831 1.608590 CCAAGTAGCCGGGCATATTTG 59.391 52.381 23.09 19.87 0.00 2.32
3899 13832 1.478654 CCCAAGTAGCCGGGCATATTT 60.479 52.381 23.09 10.52 35.09 1.40
3900 13833 0.110486 CCCAAGTAGCCGGGCATATT 59.890 55.000 23.09 9.27 35.09 1.28
3901 13834 0.766674 TCCCAAGTAGCCGGGCATAT 60.767 55.000 23.09 2.67 42.75 1.78
3902 13835 1.383386 TCCCAAGTAGCCGGGCATA 60.383 57.895 23.09 7.92 42.75 3.14
3903 13836 2.690881 TCCCAAGTAGCCGGGCAT 60.691 61.111 23.09 8.98 42.75 4.40
3904 13837 3.712907 GTCCCAAGTAGCCGGGCA 61.713 66.667 23.09 4.27 42.75 5.36
3905 13838 4.832608 CGTCCCAAGTAGCCGGGC 62.833 72.222 12.11 12.11 42.75 6.13
3906 13839 3.366739 GACGTCCCAAGTAGCCGGG 62.367 68.421 3.51 0.00 44.60 5.73
3907 13840 1.033746 TAGACGTCCCAAGTAGCCGG 61.034 60.000 13.01 0.00 0.00 6.13
3908 13841 0.381089 CTAGACGTCCCAAGTAGCCG 59.619 60.000 13.01 0.00 0.00 5.52
3909 13842 1.134560 CACTAGACGTCCCAAGTAGCC 59.865 57.143 13.01 0.00 0.00 3.93
3910 13843 2.089980 TCACTAGACGTCCCAAGTAGC 58.910 52.381 13.01 0.00 0.00 3.58
3911 13844 3.345414 ACTCACTAGACGTCCCAAGTAG 58.655 50.000 13.01 9.49 0.00 2.57
3912 13845 3.430042 ACTCACTAGACGTCCCAAGTA 57.570 47.619 13.01 0.00 0.00 2.24
3913 13846 2.289592 ACTCACTAGACGTCCCAAGT 57.710 50.000 13.01 10.84 0.00 3.16
3914 13847 4.778534 TTTACTCACTAGACGTCCCAAG 57.221 45.455 13.01 10.16 0.00 3.61
3915 13848 4.081862 CCATTTACTCACTAGACGTCCCAA 60.082 45.833 13.01 0.00 0.00 4.12
3916 13849 3.446161 CCATTTACTCACTAGACGTCCCA 59.554 47.826 13.01 0.00 0.00 4.37
3917 13850 3.737355 GCCATTTACTCACTAGACGTCCC 60.737 52.174 13.01 0.00 0.00 4.46
3918 13851 3.445857 GCCATTTACTCACTAGACGTCC 58.554 50.000 13.01 0.00 0.00 4.79
3919 13852 3.119245 TGGCCATTTACTCACTAGACGTC 60.119 47.826 7.70 7.70 0.00 4.34
3920 13853 2.829720 TGGCCATTTACTCACTAGACGT 59.170 45.455 0.00 0.00 0.00 4.34
3921 13854 3.119101 AGTGGCCATTTACTCACTAGACG 60.119 47.826 9.72 0.00 38.52 4.18
3922 13855 4.473477 AGTGGCCATTTACTCACTAGAC 57.527 45.455 9.72 0.00 38.52 2.59
3923 13856 4.832248 CAAGTGGCCATTTACTCACTAGA 58.168 43.478 13.82 0.00 39.26 2.43
3924 13857 3.375299 GCAAGTGGCCATTTACTCACTAG 59.625 47.826 13.82 0.00 39.26 2.57
3925 13858 3.009033 AGCAAGTGGCCATTTACTCACTA 59.991 43.478 13.82 0.00 46.50 2.74
3926 13859 2.162681 GCAAGTGGCCATTTACTCACT 58.837 47.619 13.82 0.00 41.59 3.41
3927 13860 2.162681 AGCAAGTGGCCATTTACTCAC 58.837 47.619 13.82 1.55 46.50 3.51
3928 13861 2.584835 AGCAAGTGGCCATTTACTCA 57.415 45.000 13.82 0.00 46.50 3.41
3929 13862 3.610911 ACTAGCAAGTGGCCATTTACTC 58.389 45.455 16.44 7.78 46.50 2.59
3930 13863 3.721087 ACTAGCAAGTGGCCATTTACT 57.279 42.857 17.05 17.05 46.50 2.24
3941 13874 7.042335 ACGCTTATTATCTTTCACTAGCAAGT 58.958 34.615 0.00 0.00 35.91 3.16
3942 13875 7.470289 ACGCTTATTATCTTTCACTAGCAAG 57.530 36.000 0.00 0.00 0.00 4.01
3943 13876 7.011109 GGAACGCTTATTATCTTTCACTAGCAA 59.989 37.037 0.00 0.00 0.00 3.91
3944 13877 6.479001 GGAACGCTTATTATCTTTCACTAGCA 59.521 38.462 0.00 0.00 0.00 3.49
3945 13878 6.702282 AGGAACGCTTATTATCTTTCACTAGC 59.298 38.462 0.00 0.00 0.00 3.42
3946 13879 9.182933 GTAGGAACGCTTATTATCTTTCACTAG 57.817 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.