Multiple sequence alignment - TraesCS6A01G377600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G377600 chr6A 100.000 4647 0 0 1 4647 598858197 598862843 0.000000e+00 8582.0
1 TraesCS6A01G377600 chr6A 83.719 1253 197 5 2399 3648 598790937 598792185 0.000000e+00 1177.0
2 TraesCS6A01G377600 chr6A 81.524 958 126 34 1005 1943 598926820 598925895 0.000000e+00 741.0
3 TraesCS6A01G377600 chr6A 85.417 192 12 9 1007 1194 598883968 598884147 7.940000e-43 185.0
4 TraesCS6A01G377600 chr6A 100.000 37 0 0 933 969 598859073 598859109 8.340000e-08 69.4
5 TraesCS6A01G377600 chr6A 100.000 37 0 0 877 913 598859129 598859165 8.340000e-08 69.4
6 TraesCS6A01G377600 chr6B 91.270 1890 111 29 2042 3908 687955824 687957682 0.000000e+00 2527.0
7 TraesCS6A01G377600 chr6B 85.306 1259 172 6 2403 3653 688033488 688032235 0.000000e+00 1288.0
8 TraesCS6A01G377600 chr6B 83.617 1349 210 9 2399 3746 688064575 688063237 0.000000e+00 1256.0
9 TraesCS6A01G377600 chr6B 82.889 1350 194 17 2399 3746 688125218 688123904 0.000000e+00 1179.0
10 TraesCS6A01G377600 chr6B 82.042 1459 185 40 956 2381 687873550 687874964 0.000000e+00 1171.0
11 TraesCS6A01G377600 chr6B 85.834 953 132 1 2367 3319 687876207 687877156 0.000000e+00 1009.0
12 TraesCS6A01G377600 chr6B 82.572 1073 176 10 2679 3746 687839693 687840759 0.000000e+00 935.0
13 TraesCS6A01G377600 chr6B 86.371 609 78 5 40 646 687872539 687873144 0.000000e+00 660.0
14 TraesCS6A01G377600 chr6B 78.643 1002 146 36 1004 1965 687954802 687955775 1.850000e-168 603.0
15 TraesCS6A01G377600 chr6B 79.438 783 102 36 1008 1765 688080676 688079928 2.500000e-137 499.0
16 TraesCS6A01G377600 chr6B 77.262 884 147 34 1007 1872 687959246 687960093 1.960000e-128 470.0
17 TraesCS6A01G377600 chr6B 89.518 353 29 5 4210 4554 687958248 687958600 1.530000e-119 440.0
18 TraesCS6A01G377600 chr6B 79.251 641 97 21 1291 1922 688126199 688125586 9.300000e-112 414.0
19 TraesCS6A01G377600 chr6B 87.417 302 19 6 3906 4191 687957902 687958200 3.470000e-86 329.0
20 TraesCS6A01G377600 chr6B 89.593 221 21 2 2048 2267 688033758 688033539 3.540000e-71 279.0
21 TraesCS6A01G377600 chr6B 86.784 227 22 7 2049 2267 688125502 688125276 3.590000e-61 246.0
22 TraesCS6A01G377600 chr6B 80.665 331 42 11 984 1301 688127770 688127449 2.160000e-58 237.0
23 TraesCS6A01G377600 chr6B 86.508 126 15 2 2055 2179 687788434 687788558 2.260000e-28 137.0
24 TraesCS6A01G377600 chr6D 95.175 1513 68 4 2399 3909 452907502 452909011 0.000000e+00 2385.0
25 TraesCS6A01G377600 chr6D 84.864 1361 186 9 2387 3746 452931180 452929839 0.000000e+00 1354.0
26 TraesCS6A01G377600 chr6D 80.000 1665 269 30 2017 3677 452863463 452865067 0.000000e+00 1171.0
27 TraesCS6A01G377600 chr6D 83.280 1250 208 1 2399 3648 452841388 452842636 0.000000e+00 1149.0
28 TraesCS6A01G377600 chr6D 80.599 969 129 35 1001 1941 452906194 452907131 0.000000e+00 693.0
29 TraesCS6A01G377600 chr6D 77.092 1183 212 38 1103 2266 452485809 452484667 3.050000e-176 628.0
30 TraesCS6A01G377600 chr6D 84.354 294 42 3 1680 1971 452931792 452931501 7.610000e-73 285.0
31 TraesCS6A01G377600 chr6D 87.552 241 26 4 2029 2267 452931483 452931245 4.580000e-70 276.0
32 TraesCS6A01G377600 chr6D 79.154 331 41 17 1007 1321 452909865 452910183 2.190000e-48 204.0
33 TraesCS6A01G377600 chr6D 94.175 103 5 1 4546 4647 7569716 7569614 6.230000e-34 156.0
34 TraesCS6A01G377600 chr6D 95.385 65 3 0 3906 3970 452909184 452909248 2.290000e-18 104.0
35 TraesCS6A01G377600 chr1D 96.117 103 3 1 4546 4647 164426184 164426082 2.880000e-37 167.0
36 TraesCS6A01G377600 chr5B 94.231 104 4 2 4546 4647 697590216 697590113 1.730000e-34 158.0
37 TraesCS6A01G377600 chr5A 94.231 104 4 1 4546 4647 694556102 694555999 1.730000e-34 158.0
38 TraesCS6A01G377600 chr1B 94.175 103 4 2 4546 4647 458717245 458717144 6.230000e-34 156.0
39 TraesCS6A01G377600 chr1B 93.269 104 5 2 4546 4647 591222255 591222358 8.050000e-33 152.0
40 TraesCS6A01G377600 chr7D 94.118 102 5 1 4546 4646 182503493 182503594 2.240000e-33 154.0
41 TraesCS6A01G377600 chr4B 93.269 104 5 2 4546 4647 409504633 409504530 8.050000e-33 152.0
42 TraesCS6A01G377600 chr4A 91.818 110 7 2 4539 4647 650164303 650164411 8.050000e-33 152.0
43 TraesCS6A01G377600 chr1A 85.294 68 6 2 4487 4554 34562625 34562562 3.000000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G377600 chr6A 598858197 598862843 4646 False 2906.933333 8582 100.00000 1 4647 3 chr6A.!!$F3 4646
1 TraesCS6A01G377600 chr6A 598790937 598792185 1248 False 1177.000000 1177 83.71900 2399 3648 1 chr6A.!!$F1 1249
2 TraesCS6A01G377600 chr6A 598925895 598926820 925 True 741.000000 741 81.52400 1005 1943 1 chr6A.!!$R1 938
3 TraesCS6A01G377600 chr6B 688063237 688064575 1338 True 1256.000000 1256 83.61700 2399 3746 1 chr6B.!!$R1 1347
4 TraesCS6A01G377600 chr6B 687872539 687877156 4617 False 946.666667 1171 84.74900 40 3319 3 chr6B.!!$F3 3279
5 TraesCS6A01G377600 chr6B 687839693 687840759 1066 False 935.000000 935 82.57200 2679 3746 1 chr6B.!!$F2 1067
6 TraesCS6A01G377600 chr6B 687954802 687960093 5291 False 873.800000 2527 84.82200 1004 4554 5 chr6B.!!$F4 3550
7 TraesCS6A01G377600 chr6B 688032235 688033758 1523 True 783.500000 1288 87.44950 2048 3653 2 chr6B.!!$R3 1605
8 TraesCS6A01G377600 chr6B 688123904 688127770 3866 True 519.000000 1179 82.39725 984 3746 4 chr6B.!!$R4 2762
9 TraesCS6A01G377600 chr6B 688079928 688080676 748 True 499.000000 499 79.43800 1008 1765 1 chr6B.!!$R2 757
10 TraesCS6A01G377600 chr6D 452863463 452865067 1604 False 1171.000000 1171 80.00000 2017 3677 1 chr6D.!!$F2 1660
11 TraesCS6A01G377600 chr6D 452841388 452842636 1248 False 1149.000000 1149 83.28000 2399 3648 1 chr6D.!!$F1 1249
12 TraesCS6A01G377600 chr6D 452906194 452910183 3989 False 846.500000 2385 87.57825 1001 3970 4 chr6D.!!$F3 2969
13 TraesCS6A01G377600 chr6D 452929839 452931792 1953 True 638.333333 1354 85.59000 1680 3746 3 chr6D.!!$R3 2066
14 TraesCS6A01G377600 chr6D 452484667 452485809 1142 True 628.000000 628 77.09200 1103 2266 1 chr6D.!!$R2 1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 519 0.032540 GGGTCGACTACGTGGTGTTT 59.967 55.0 16.46 0.0 40.69 2.83 F
786 970 0.106708 GTTGAGCTGTGTGACCAGGA 59.893 55.0 0.00 0.0 32.92 3.86 F
1622 3146 0.035881 CTTGTCCTGCTCAGCTTCCA 59.964 55.0 0.00 0.0 0.00 3.53 F
1731 3261 0.317160 CGGACTGGTTCAGCTACACA 59.683 55.0 0.00 0.0 34.37 3.72 F
1766 3296 0.672401 AACCGCACCGACGAATTCAT 60.672 50.0 6.22 0.0 34.06 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 3128 0.035881 CTGGAAGCTGAGCAGGACAA 59.964 55.0 7.39 0.00 0.00 3.18 R
1731 3261 0.318762 GGTTGAGGAAGACGCTGTCT 59.681 55.0 5.54 5.54 45.64 3.41 R
3035 5877 0.317160 TTCGCCGTCTTGACATCACT 59.683 50.0 1.59 0.00 0.00 3.41 R
3445 6289 0.721718 CAACTTCCTTCATCGACGGC 59.278 55.0 0.00 0.00 0.00 5.68 R
3687 6541 2.292828 AAGGAGTCCCACCAAACATG 57.707 50.0 5.25 0.00 33.88 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.886960 GATGTTGTTTCTATTGACCTGCT 57.113 39.130 0.00 0.00 0.00 4.24
23 24 6.259550 GATGTTGTTTCTATTGACCTGCTT 57.740 37.500 0.00 0.00 0.00 3.91
24 25 6.655078 ATGTTGTTTCTATTGACCTGCTTT 57.345 33.333 0.00 0.00 0.00 3.51
25 26 5.830912 TGTTGTTTCTATTGACCTGCTTTG 58.169 37.500 0.00 0.00 0.00 2.77
26 27 5.359576 TGTTGTTTCTATTGACCTGCTTTGT 59.640 36.000 0.00 0.00 0.00 2.83
27 28 6.544197 TGTTGTTTCTATTGACCTGCTTTGTA 59.456 34.615 0.00 0.00 0.00 2.41
28 29 7.067615 TGTTGTTTCTATTGACCTGCTTTGTAA 59.932 33.333 0.00 0.00 0.00 2.41
29 30 7.202016 TGTTTCTATTGACCTGCTTTGTAAG 57.798 36.000 0.00 0.00 0.00 2.34
30 31 6.995686 TGTTTCTATTGACCTGCTTTGTAAGA 59.004 34.615 0.00 0.00 0.00 2.10
31 32 7.173218 TGTTTCTATTGACCTGCTTTGTAAGAG 59.827 37.037 0.00 0.00 0.00 2.85
32 33 6.605471 TCTATTGACCTGCTTTGTAAGAGA 57.395 37.500 0.00 0.00 0.00 3.10
33 34 7.004555 TCTATTGACCTGCTTTGTAAGAGAA 57.995 36.000 0.00 0.00 0.00 2.87
34 35 7.624549 TCTATTGACCTGCTTTGTAAGAGAAT 58.375 34.615 0.00 0.00 0.00 2.40
35 36 8.103305 TCTATTGACCTGCTTTGTAAGAGAATT 58.897 33.333 0.00 0.00 0.00 2.17
36 37 6.959639 TTGACCTGCTTTGTAAGAGAATTT 57.040 33.333 0.00 0.00 0.00 1.82
37 38 6.317789 TGACCTGCTTTGTAAGAGAATTTG 57.682 37.500 0.00 0.00 0.00 2.32
38 39 6.061441 TGACCTGCTTTGTAAGAGAATTTGA 58.939 36.000 0.00 0.00 0.00 2.69
70 71 1.243902 ATCGATTTGGCCGTTTGTGT 58.756 45.000 0.00 0.00 0.00 3.72
84 85 7.390996 TGGCCGTTTGTGTTTTATTTATAGAGA 59.609 33.333 0.00 0.00 0.00 3.10
86 87 8.448615 GCCGTTTGTGTTTTATTTATAGAGAGT 58.551 33.333 0.00 0.00 0.00 3.24
109 110 6.018669 AGTGAACGTCTGTTTTGAGATCTTTC 60.019 38.462 0.00 0.00 38.78 2.62
110 111 4.974103 ACGTCTGTTTTGAGATCTTTCG 57.026 40.909 0.00 0.00 0.00 3.46
118 119 5.299279 TGTTTTGAGATCTTTCGGCTTTTCT 59.701 36.000 0.00 0.00 0.00 2.52
119 120 5.362556 TTTGAGATCTTTCGGCTTTTCTG 57.637 39.130 0.00 0.00 0.00 3.02
120 121 4.008074 TGAGATCTTTCGGCTTTTCTGT 57.992 40.909 0.00 0.00 0.00 3.41
121 122 3.748048 TGAGATCTTTCGGCTTTTCTGTG 59.252 43.478 0.00 0.00 0.00 3.66
136 137 3.536956 TCTGTGTCTTCGACCAAAGTT 57.463 42.857 0.00 0.00 0.00 2.66
142 143 6.518493 TGTGTCTTCGACCAAAGTTAAGTAT 58.482 36.000 0.00 0.00 0.00 2.12
143 144 6.987992 TGTGTCTTCGACCAAAGTTAAGTATT 59.012 34.615 0.00 0.00 0.00 1.89
158 159 7.875971 AGTTAAGTATTGAAGCAGAGTTTTGG 58.124 34.615 0.00 0.00 0.00 3.28
161 162 6.803154 AGTATTGAAGCAGAGTTTTGGTAC 57.197 37.500 0.00 0.00 0.00 3.34
182 183 9.186837 TGGTACACCTAGAGACTAATCTTTTAG 57.813 37.037 0.00 0.00 37.88 1.85
219 220 3.177884 AGGGTGAGGCCTGCAACA 61.178 61.111 12.00 0.00 37.43 3.33
243 244 9.408648 ACATAATTCAGGGGTAATTAGTGAAAG 57.591 33.333 4.48 0.00 33.53 2.62
244 245 8.850156 CATAATTCAGGGGTAATTAGTGAAAGG 58.150 37.037 4.48 0.00 33.53 3.11
252 253 5.044624 GGGTAATTAGTGAAAGGTTAGGGGT 60.045 44.000 0.00 0.00 0.00 4.95
264 265 4.390008 AGGTTAGGGGTGGGATTAATCTT 58.610 43.478 14.95 0.00 0.00 2.40
274 275 3.461831 TGGGATTAATCTTCCGTGGGAAT 59.538 43.478 14.95 0.00 41.23 3.01
278 279 5.581085 GGATTAATCTTCCGTGGGAATATCG 59.419 44.000 14.95 0.00 41.23 2.92
280 281 4.417426 AATCTTCCGTGGGAATATCGTT 57.583 40.909 0.00 0.00 41.23 3.85
283 284 3.386726 TCTTCCGTGGGAATATCGTTCAT 59.613 43.478 0.00 0.00 41.23 2.57
292 293 8.242053 CGTGGGAATATCGTTCATAAGTATAGT 58.758 37.037 0.00 0.00 0.00 2.12
293 294 9.924650 GTGGGAATATCGTTCATAAGTATAGTT 57.075 33.333 0.00 0.00 0.00 2.24
322 323 8.275015 TCAAGTAAAACAAAAGTGAGATGACA 57.725 30.769 0.00 0.00 0.00 3.58
328 330 6.713762 AACAAAAGTGAGATGACATTTCCA 57.286 33.333 3.68 0.00 0.00 3.53
358 360 6.451393 TCCATGTAAAATGGGAACTTTTTCG 58.549 36.000 4.59 0.00 43.95 3.46
378 380 0.236449 GTACGACCAAACAAAGCCGG 59.764 55.000 0.00 0.00 0.00 6.13
417 419 2.355818 GGTTGGGTGATTAGGAGGACAC 60.356 54.545 0.00 0.00 0.00 3.67
418 420 2.572104 GTTGGGTGATTAGGAGGACACT 59.428 50.000 0.00 0.00 34.28 3.55
421 423 2.188817 GGTGATTAGGAGGACACTGGT 58.811 52.381 0.00 0.00 34.28 4.00
430 432 2.930109 AGGACACTGGTATCCTCAGT 57.070 50.000 0.00 0.00 41.83 3.41
433 435 2.166664 GGACACTGGTATCCTCAGTCAC 59.833 54.545 0.00 0.00 42.87 3.67
439 441 0.466124 GTATCCTCAGTCACCAGGGC 59.534 60.000 0.00 0.00 0.00 5.19
445 447 1.673665 CAGTCACCAGGGCTCAAGC 60.674 63.158 0.00 0.00 41.14 4.01
448 450 0.957888 GTCACCAGGGCTCAAGCTTC 60.958 60.000 0.00 0.00 41.70 3.86
450 452 0.538057 CACCAGGGCTCAAGCTTCAA 60.538 55.000 0.00 0.00 41.70 2.69
460 462 4.225208 GCTCAAGCTTCAAAGTTGACATC 58.775 43.478 0.00 0.00 36.83 3.06
467 469 4.498682 GCTTCAAAGTTGACATCAGTGCTT 60.499 41.667 0.00 0.00 36.83 3.91
471 473 2.511659 AGTTGACATCAGTGCTTGCAT 58.488 42.857 0.00 0.00 0.00 3.96
509 511 0.037605 AGCTTTTGGGGTCGACTACG 60.038 55.000 16.46 0.00 41.26 3.51
510 512 0.320160 GCTTTTGGGGTCGACTACGT 60.320 55.000 16.46 0.00 40.69 3.57
517 519 0.032540 GGGTCGACTACGTGGTGTTT 59.967 55.000 16.46 0.00 40.69 2.83
528 530 1.202132 CGTGGTGTTTGTGGTGACTTG 60.202 52.381 0.00 0.00 0.00 3.16
548 550 7.335171 TGACTTGGTCAATCTCAAGATGTTATG 59.665 37.037 9.63 0.00 39.78 1.90
549 551 7.397221 ACTTGGTCAATCTCAAGATGTTATGA 58.603 34.615 9.63 0.00 41.94 2.15
552 554 6.820152 TGGTCAATCTCAAGATGTTATGACTG 59.180 38.462 16.38 1.90 38.06 3.51
577 579 4.586421 TCAGTCTATTGGAGGTGCTCATAG 59.414 45.833 0.00 0.00 31.08 2.23
579 581 3.898123 GTCTATTGGAGGTGCTCATAGGA 59.102 47.826 0.00 0.00 31.08 2.94
580 582 4.345257 GTCTATTGGAGGTGCTCATAGGAA 59.655 45.833 0.00 0.00 31.08 3.36
581 583 5.012561 GTCTATTGGAGGTGCTCATAGGAAT 59.987 44.000 0.00 0.00 31.08 3.01
582 584 3.565764 TTGGAGGTGCTCATAGGAATG 57.434 47.619 0.00 0.00 31.08 2.67
583 585 1.141657 TGGAGGTGCTCATAGGAATGC 59.858 52.381 0.00 0.00 32.76 3.56
586 588 1.210478 AGGTGCTCATAGGAATGCGTT 59.790 47.619 0.00 0.00 32.76 4.84
587 589 1.331756 GGTGCTCATAGGAATGCGTTG 59.668 52.381 0.00 0.00 32.76 4.10
588 590 2.009774 GTGCTCATAGGAATGCGTTGT 58.990 47.619 0.00 0.00 32.76 3.32
589 591 2.009051 TGCTCATAGGAATGCGTTGTG 58.991 47.619 0.00 0.00 32.76 3.33
590 592 2.009774 GCTCATAGGAATGCGTTGTGT 58.990 47.619 0.00 0.00 32.76 3.72
591 593 3.194861 GCTCATAGGAATGCGTTGTGTA 58.805 45.455 0.00 0.00 32.76 2.90
592 594 3.809832 GCTCATAGGAATGCGTTGTGTAT 59.190 43.478 0.00 0.00 32.76 2.29
597 599 1.523501 GAATGCGTTGTGTATGTGCG 58.476 50.000 0.00 0.00 0.00 5.34
606 608 5.194657 CGTTGTGTATGTGCGTTTATATGG 58.805 41.667 0.00 0.00 0.00 2.74
609 611 7.095982 CGTTGTGTATGTGCGTTTATATGGATA 60.096 37.037 0.00 0.00 0.00 2.59
613 615 8.770828 GTGTATGTGCGTTTATATGGATAAGTT 58.229 33.333 0.00 0.00 0.00 2.66
638 640 3.980238 CTCGTGTATGTGAGCAACTTC 57.020 47.619 0.00 0.00 0.00 3.01
639 641 2.324860 TCGTGTATGTGAGCAACTTCG 58.675 47.619 0.00 0.00 0.00 3.79
640 642 1.390123 CGTGTATGTGAGCAACTTCGG 59.610 52.381 0.00 0.00 0.00 4.30
641 643 2.413837 GTGTATGTGAGCAACTTCGGT 58.586 47.619 0.00 0.00 0.00 4.69
642 644 2.806244 GTGTATGTGAGCAACTTCGGTT 59.194 45.455 0.00 0.00 38.94 4.44
652 654 2.038387 AACTTCGGTTGTGCTGTTCT 57.962 45.000 0.00 0.00 36.72 3.01
653 655 1.583054 ACTTCGGTTGTGCTGTTCTC 58.417 50.000 0.00 0.00 0.00 2.87
654 656 1.139058 ACTTCGGTTGTGCTGTTCTCT 59.861 47.619 0.00 0.00 0.00 3.10
655 657 1.795286 CTTCGGTTGTGCTGTTCTCTC 59.205 52.381 0.00 0.00 0.00 3.20
656 658 0.750249 TCGGTTGTGCTGTTCTCTCA 59.250 50.000 0.00 0.00 0.00 3.27
657 659 1.138069 TCGGTTGTGCTGTTCTCTCAA 59.862 47.619 0.00 0.00 0.00 3.02
658 660 1.939934 CGGTTGTGCTGTTCTCTCAAA 59.060 47.619 0.00 0.00 0.00 2.69
659 661 2.354510 CGGTTGTGCTGTTCTCTCAAAA 59.645 45.455 0.00 0.00 0.00 2.44
660 662 3.181501 CGGTTGTGCTGTTCTCTCAAAAA 60.182 43.478 0.00 0.00 0.00 1.94
694 696 8.918961 AAAACTTCGATTGTGATGTGTTAAAA 57.081 26.923 0.00 0.00 0.00 1.52
731 747 1.149148 GAAGTTCTCCACGTGGCTTC 58.851 55.000 30.25 27.94 34.44 3.86
739 755 2.293122 CTCCACGTGGCTTCAAATTTCA 59.707 45.455 30.25 6.88 34.44 2.69
740 756 2.034053 TCCACGTGGCTTCAAATTTCAC 59.966 45.455 30.25 0.00 34.44 3.18
741 757 2.393764 CACGTGGCTTCAAATTTCACC 58.606 47.619 7.95 0.00 0.00 4.02
742 758 1.339929 ACGTGGCTTCAAATTTCACCC 59.660 47.619 0.00 0.00 0.00 4.61
743 759 1.339610 CGTGGCTTCAAATTTCACCCA 59.660 47.619 0.00 0.00 0.00 4.51
744 760 2.607771 CGTGGCTTCAAATTTCACCCAG 60.608 50.000 0.00 0.00 0.00 4.45
745 761 1.344114 TGGCTTCAAATTTCACCCAGC 59.656 47.619 0.00 0.00 0.00 4.85
746 762 1.344114 GGCTTCAAATTTCACCCAGCA 59.656 47.619 0.00 0.00 0.00 4.41
747 763 2.224257 GGCTTCAAATTTCACCCAGCAA 60.224 45.455 0.00 0.00 0.00 3.91
748 764 2.802247 GCTTCAAATTTCACCCAGCAAC 59.198 45.455 0.00 0.00 0.00 4.17
749 765 3.493176 GCTTCAAATTTCACCCAGCAACT 60.493 43.478 0.00 0.00 0.00 3.16
761 777 3.426568 GCAACTGGCTGGAGCGTC 61.427 66.667 0.00 0.00 43.26 5.19
772 956 2.600731 CTGGAGCGTCAGTAAGTTGAG 58.399 52.381 1.87 0.00 0.00 3.02
773 957 1.336887 TGGAGCGTCAGTAAGTTGAGC 60.337 52.381 0.00 0.00 0.00 4.26
777 961 1.457303 GCGTCAGTAAGTTGAGCTGTG 59.543 52.381 0.00 0.00 0.00 3.66
778 962 2.743938 CGTCAGTAAGTTGAGCTGTGT 58.256 47.619 0.00 0.00 0.00 3.72
779 963 2.472861 CGTCAGTAAGTTGAGCTGTGTG 59.527 50.000 0.00 0.00 0.00 3.82
780 964 3.717707 GTCAGTAAGTTGAGCTGTGTGA 58.282 45.455 0.00 0.00 0.00 3.58
781 965 3.491267 GTCAGTAAGTTGAGCTGTGTGAC 59.509 47.826 0.00 0.00 0.00 3.67
782 966 2.802816 CAGTAAGTTGAGCTGTGTGACC 59.197 50.000 0.00 0.00 0.00 4.02
783 967 2.434336 AGTAAGTTGAGCTGTGTGACCA 59.566 45.455 0.00 0.00 0.00 4.02
784 968 1.959042 AAGTTGAGCTGTGTGACCAG 58.041 50.000 0.00 0.00 35.49 4.00
785 969 0.107456 AGTTGAGCTGTGTGACCAGG 59.893 55.000 0.00 0.00 32.92 4.45
786 970 0.106708 GTTGAGCTGTGTGACCAGGA 59.893 55.000 0.00 0.00 32.92 3.86
787 971 0.106708 TTGAGCTGTGTGACCAGGAC 59.893 55.000 0.00 0.00 32.92 3.85
788 972 0.760567 TGAGCTGTGTGACCAGGACT 60.761 55.000 0.00 0.00 32.92 3.85
789 973 0.320247 GAGCTGTGTGACCAGGACTG 60.320 60.000 0.00 0.00 32.92 3.51
792 976 0.882042 CTGTGTGACCAGGACTGTGC 60.882 60.000 0.00 0.00 0.00 4.57
810 994 0.179240 GCGTGACAATCTGCGTCAAG 60.179 55.000 0.00 0.00 44.58 3.02
823 1007 3.131240 GCGTCAAGCGGAACATTTATT 57.869 42.857 0.00 0.00 41.69 1.40
826 1010 4.201783 GCGTCAAGCGGAACATTTATTAGT 60.202 41.667 0.00 0.00 41.69 2.24
828 1012 6.408428 CGTCAAGCGGAACATTTATTAGTAC 58.592 40.000 0.00 0.00 36.85 2.73
829 1013 6.255020 CGTCAAGCGGAACATTTATTAGTACT 59.745 38.462 0.00 0.00 36.85 2.73
830 1014 7.514747 CGTCAAGCGGAACATTTATTAGTACTC 60.515 40.741 0.00 0.00 36.85 2.59
832 1016 5.899299 AGCGGAACATTTATTAGTACTCGT 58.101 37.500 0.00 0.00 0.00 4.18
834 1018 5.174579 GCGGAACATTTATTAGTACTCGTCC 59.825 44.000 0.00 0.00 0.00 4.79
835 1019 6.267817 CGGAACATTTATTAGTACTCGTCCA 58.732 40.000 0.00 0.00 0.00 4.02
836 1020 6.921857 CGGAACATTTATTAGTACTCGTCCAT 59.078 38.462 0.00 0.00 0.00 3.41
837 1021 7.096189 CGGAACATTTATTAGTACTCGTCCATG 60.096 40.741 0.00 0.72 0.00 3.66
838 1022 7.709613 GGAACATTTATTAGTACTCGTCCATGT 59.290 37.037 0.00 1.38 0.00 3.21
840 1024 9.745880 AACATTTATTAGTACTCGTCCATGTAG 57.254 33.333 0.00 0.00 0.00 2.74
841 1025 9.128404 ACATTTATTAGTACTCGTCCATGTAGA 57.872 33.333 0.00 0.00 0.00 2.59
842 1026 9.395707 CATTTATTAGTACTCGTCCATGTAGAC 57.604 37.037 0.00 0.00 0.00 2.59
844 1028 6.621316 ATTAGTACTCGTCCATGTAGACTG 57.379 41.667 0.00 0.00 34.46 3.51
845 1029 3.280295 AGTACTCGTCCATGTAGACTGG 58.720 50.000 0.00 0.00 34.46 4.00
846 1030 2.217510 ACTCGTCCATGTAGACTGGT 57.782 50.000 0.00 0.00 35.19 4.00
847 1031 2.093106 ACTCGTCCATGTAGACTGGTC 58.907 52.381 0.00 0.00 35.19 4.02
849 1033 2.755655 CTCGTCCATGTAGACTGGTCTT 59.244 50.000 8.60 0.00 40.93 3.01
850 1034 3.945921 CTCGTCCATGTAGACTGGTCTTA 59.054 47.826 8.60 0.00 40.93 2.10
853 1037 4.438880 CGTCCATGTAGACTGGTCTTACAG 60.439 50.000 8.60 0.00 44.03 2.74
854 1038 4.023980 TCCATGTAGACTGGTCTTACAGG 58.976 47.826 8.60 11.41 42.75 4.00
856 1040 4.954202 CCATGTAGACTGGTCTTACAGGTA 59.046 45.833 8.60 0.00 42.75 3.08
857 1041 5.421056 CCATGTAGACTGGTCTTACAGGTAA 59.579 44.000 8.60 0.00 42.75 2.85
875 1083 5.023533 GGTAAGTTCATACCTCTGCATCA 57.976 43.478 0.00 0.00 41.80 3.07
876 1084 5.428253 GGTAAGTTCATACCTCTGCATCAA 58.572 41.667 0.00 0.00 41.80 2.57
877 1085 6.058183 GGTAAGTTCATACCTCTGCATCAAT 58.942 40.000 0.00 0.00 41.80 2.57
878 1086 6.203723 GGTAAGTTCATACCTCTGCATCAATC 59.796 42.308 0.00 0.00 41.80 2.67
879 1087 5.627182 AGTTCATACCTCTGCATCAATCT 57.373 39.130 0.00 0.00 0.00 2.40
880 1088 5.366460 AGTTCATACCTCTGCATCAATCTG 58.634 41.667 0.00 0.00 0.00 2.90
881 1089 3.736720 TCATACCTCTGCATCAATCTGC 58.263 45.455 0.00 0.00 42.62 4.26
882 1090 3.390311 TCATACCTCTGCATCAATCTGCT 59.610 43.478 0.00 0.00 42.75 4.24
883 1091 2.328819 ACCTCTGCATCAATCTGCTC 57.671 50.000 0.00 0.00 42.75 4.26
884 1092 1.558294 ACCTCTGCATCAATCTGCTCA 59.442 47.619 0.00 0.00 42.75 4.26
885 1093 1.941294 CCTCTGCATCAATCTGCTCAC 59.059 52.381 0.00 0.00 42.75 3.51
886 1094 2.420269 CCTCTGCATCAATCTGCTCACT 60.420 50.000 0.00 0.00 42.75 3.41
887 1095 2.867368 CTCTGCATCAATCTGCTCACTC 59.133 50.000 0.00 0.00 42.75 3.51
888 1096 1.941294 CTGCATCAATCTGCTCACTCC 59.059 52.381 0.00 0.00 42.75 3.85
889 1097 1.307097 GCATCAATCTGCTCACTCCC 58.693 55.000 0.00 0.00 39.12 4.30
890 1098 1.134159 GCATCAATCTGCTCACTCCCT 60.134 52.381 0.00 0.00 39.12 4.20
891 1099 2.836262 CATCAATCTGCTCACTCCCTC 58.164 52.381 0.00 0.00 0.00 4.30
892 1100 1.942776 TCAATCTGCTCACTCCCTCA 58.057 50.000 0.00 0.00 0.00 3.86
893 1101 1.552337 TCAATCTGCTCACTCCCTCAC 59.448 52.381 0.00 0.00 0.00 3.51
894 1102 0.534412 AATCTGCTCACTCCCTCACG 59.466 55.000 0.00 0.00 0.00 4.35
895 1103 1.326213 ATCTGCTCACTCCCTCACGG 61.326 60.000 0.00 0.00 0.00 4.94
896 1104 3.655810 CTGCTCACTCCCTCACGGC 62.656 68.421 0.00 0.00 0.00 5.68
897 1105 3.695606 GCTCACTCCCTCACGGCA 61.696 66.667 0.00 0.00 0.00 5.69
898 1106 3.023949 GCTCACTCCCTCACGGCAT 62.024 63.158 0.00 0.00 0.00 4.40
899 1107 1.599047 CTCACTCCCTCACGGCATT 59.401 57.895 0.00 0.00 0.00 3.56
900 1108 0.460987 CTCACTCCCTCACGGCATTC 60.461 60.000 0.00 0.00 0.00 2.67
901 1109 1.191489 TCACTCCCTCACGGCATTCA 61.191 55.000 0.00 0.00 0.00 2.57
902 1110 1.021390 CACTCCCTCACGGCATTCAC 61.021 60.000 0.00 0.00 0.00 3.18
903 1111 1.450312 CTCCCTCACGGCATTCACC 60.450 63.158 0.00 0.00 0.00 4.02
904 1112 1.903877 CTCCCTCACGGCATTCACCT 61.904 60.000 0.00 0.00 0.00 4.00
905 1113 1.450312 CCCTCACGGCATTCACCTC 60.450 63.158 0.00 0.00 0.00 3.85
906 1114 1.450312 CCTCACGGCATTCACCTCC 60.450 63.158 0.00 0.00 0.00 4.30
907 1115 1.296392 CTCACGGCATTCACCTCCA 59.704 57.895 0.00 0.00 0.00 3.86
910 1118 2.819595 CGGCATTCACCTCCACCG 60.820 66.667 0.00 0.00 0.00 4.94
919 1127 1.977544 ACCTCCACCGTCCTTCTCG 60.978 63.158 0.00 0.00 0.00 4.04
923 1131 1.080705 CCACCGTCCTTCTCGACAC 60.081 63.158 0.00 0.00 32.74 3.67
934 1142 0.803117 TCTCGACACGACTGGTCATC 59.197 55.000 0.00 0.00 34.97 2.92
935 1143 0.805614 CTCGACACGACTGGTCATCT 59.194 55.000 0.00 0.00 34.97 2.90
936 1144 0.521735 TCGACACGACTGGTCATCTG 59.478 55.000 0.00 0.00 34.97 2.90
937 1145 1.073216 CGACACGACTGGTCATCTGC 61.073 60.000 0.00 0.00 34.97 4.26
938 1146 0.244994 GACACGACTGGTCATCTGCT 59.755 55.000 0.00 0.00 35.36 4.24
939 1147 0.244994 ACACGACTGGTCATCTGCTC 59.755 55.000 0.00 0.00 0.00 4.26
940 1148 0.244721 CACGACTGGTCATCTGCTCA 59.755 55.000 0.00 0.00 0.00 4.26
941 1149 0.244994 ACGACTGGTCATCTGCTCAC 59.755 55.000 0.00 0.00 0.00 3.51
942 1150 0.529833 CGACTGGTCATCTGCTCACT 59.470 55.000 1.63 0.00 0.00 3.41
943 1151 1.468908 CGACTGGTCATCTGCTCACTC 60.469 57.143 1.63 0.00 0.00 3.51
944 1152 0.901124 ACTGGTCATCTGCTCACTCC 59.099 55.000 0.00 0.00 0.00 3.85
945 1153 0.177604 CTGGTCATCTGCTCACTCCC 59.822 60.000 0.00 0.00 0.00 4.30
946 1154 0.252421 TGGTCATCTGCTCACTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
947 1155 0.463620 GGTCATCTGCTCACTCCCTC 59.536 60.000 0.00 0.00 0.00 4.30
948 1156 1.189752 GTCATCTGCTCACTCCCTCA 58.810 55.000 0.00 0.00 0.00 3.86
949 1157 1.134848 GTCATCTGCTCACTCCCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
950 1158 0.179116 CATCTGCTCACTCCCTCACG 60.179 60.000 0.00 0.00 0.00 4.35
951 1159 1.326213 ATCTGCTCACTCCCTCACGG 61.326 60.000 0.00 0.00 0.00 4.94
952 1160 3.655810 CTGCTCACTCCCTCACGGC 62.656 68.421 0.00 0.00 0.00 5.68
953 1161 3.695606 GCTCACTCCCTCACGGCA 61.696 66.667 0.00 0.00 0.00 5.69
954 1162 3.023949 GCTCACTCCCTCACGGCAT 62.024 63.158 0.00 0.00 0.00 4.40
955 1163 1.599047 CTCACTCCCTCACGGCATT 59.401 57.895 0.00 0.00 0.00 3.56
956 1164 0.460987 CTCACTCCCTCACGGCATTC 60.461 60.000 0.00 0.00 0.00 2.67
957 1165 1.191489 TCACTCCCTCACGGCATTCA 61.191 55.000 0.00 0.00 0.00 2.57
958 1166 1.021390 CACTCCCTCACGGCATTCAC 61.021 60.000 0.00 0.00 0.00 3.18
967 1175 2.351276 GGCATTCACCTCCACCGT 59.649 61.111 0.00 0.00 0.00 4.83
995 1212 1.162181 CGTCCTCCTCACCGCGTATA 61.162 60.000 4.92 0.00 0.00 1.47
997 1214 1.068472 GTCCTCCTCACCGCGTATATG 60.068 57.143 4.92 0.00 0.00 1.78
999 1216 2.156917 CCTCCTCACCGCGTATATGTA 58.843 52.381 4.92 0.00 0.00 2.29
1002 1219 4.166523 CTCCTCACCGCGTATATGTAATG 58.833 47.826 4.92 0.00 0.00 1.90
1031 1255 1.072331 GAGCAACCAACCAGAGGAGAA 59.928 52.381 0.00 0.00 0.00 2.87
1047 1275 2.019984 GAGAACATGTCAAGGATGGCC 58.980 52.381 0.00 0.00 0.00 5.36
1050 1278 0.700564 ACATGTCAAGGATGGCCACT 59.299 50.000 8.16 0.00 36.29 4.00
1090 1324 2.911509 TGCATTTGCTGGTGGCGT 60.912 55.556 3.94 0.00 45.43 5.68
1155 1398 1.968017 CAGGTGCGGCAACATCACT 60.968 57.895 21.65 0.00 39.05 3.41
1329 2847 2.125673 GCTCGCGCCTACCTCAAA 60.126 61.111 0.00 0.00 0.00 2.69
1348 2866 1.755008 GCGAGGAGGGAGTGCTACT 60.755 63.158 0.00 0.00 0.00 2.57
1360 2878 2.168521 GAGTGCTACTACTCCAATGGCA 59.831 50.000 0.00 0.00 40.92 4.92
1380 2898 1.299165 CCTCGCCTATCGGAACACG 60.299 63.158 0.00 0.00 46.11 4.49
1402 2926 1.746615 CACATGTCCCTCCAAGGCG 60.747 63.158 0.00 0.00 32.73 5.52
1416 2940 4.176752 GGCGCCCCCTACCTCTTG 62.177 72.222 18.11 0.00 0.00 3.02
1480 3004 3.179939 GCTTCTTCGTCGACGGCC 61.180 66.667 35.05 14.69 40.29 6.13
1482 3006 1.153823 CTTCTTCGTCGACGGCCAT 60.154 57.895 35.05 0.00 40.29 4.40
1485 3009 3.642778 CTTCGTCGACGGCCATGGT 62.643 63.158 35.05 0.00 40.29 3.55
1487 3011 3.186047 CGTCGACGGCCATGGTTC 61.186 66.667 29.70 6.83 35.37 3.62
1503 3027 2.273179 TTCCTACGTCAGCGGCTGT 61.273 57.895 27.63 12.87 43.45 4.40
1505 3029 1.226603 CCTACGTCAGCGGCTGTAC 60.227 63.158 27.63 21.61 43.45 2.90
1510 3034 2.675423 TCAGCGGCTGTACGTCCT 60.675 61.111 27.63 0.00 35.98 3.85
1517 3041 1.301401 GCTGTACGTCCTTGTGCCA 60.301 57.895 0.00 0.00 0.00 4.92
1543 3067 4.740822 GGAACACCATGCCGGGCT 62.741 66.667 21.46 2.61 40.22 5.19
1600 3124 0.449388 CGCTGGCATCAACTTCTTCC 59.551 55.000 0.00 0.00 0.00 3.46
1604 3128 0.678048 GGCATCAACTTCTTCCGGCT 60.678 55.000 0.00 0.00 0.00 5.52
1606 3130 1.135575 GCATCAACTTCTTCCGGCTTG 60.136 52.381 0.00 0.00 0.00 4.01
1607 3131 2.154462 CATCAACTTCTTCCGGCTTGT 58.846 47.619 0.00 0.00 0.00 3.16
1613 3137 1.768684 TTCTTCCGGCTTGTCCTGCT 61.769 55.000 0.00 0.00 0.00 4.24
1616 3140 2.435586 CCGGCTTGTCCTGCTCAG 60.436 66.667 0.00 0.00 0.00 3.35
1622 3146 0.035881 CTTGTCCTGCTCAGCTTCCA 59.964 55.000 0.00 0.00 0.00 3.53
1668 3198 2.887152 GCAGGATGACACAAACTCCTTT 59.113 45.455 0.00 0.00 39.69 3.11
1676 3206 4.638421 TGACACAAACTCCTTTACCAACAG 59.362 41.667 0.00 0.00 0.00 3.16
1678 3208 3.632145 CACAAACTCCTTTACCAACAGCT 59.368 43.478 0.00 0.00 0.00 4.24
1684 3214 1.156736 CTTTACCAACAGCTCCACGG 58.843 55.000 0.00 0.00 0.00 4.94
1731 3261 0.317160 CGGACTGGTTCAGCTACACA 59.683 55.000 0.00 0.00 34.37 3.72
1761 3291 2.355363 CTCAACCGCACCGACGAA 60.355 61.111 0.00 0.00 34.06 3.85
1765 3295 1.301087 AACCGCACCGACGAATTCA 60.301 52.632 6.22 0.00 34.06 2.57
1766 3296 0.672401 AACCGCACCGACGAATTCAT 60.672 50.000 6.22 0.00 34.06 2.57
1888 3421 1.273048 GCTTCAATGTCACCAATGGCA 59.727 47.619 0.00 0.00 46.67 4.92
1957 3499 0.934901 CGACGACGGATGCATAGGTG 60.935 60.000 0.00 0.00 35.72 4.00
1971 3513 3.205338 CATAGGTGCACATTCCGATTCA 58.795 45.455 20.43 0.00 0.00 2.57
1979 3521 6.072508 GGTGCACATTCCGATTCATTATACAT 60.073 38.462 20.43 0.00 0.00 2.29
1980 3522 7.362662 GTGCACATTCCGATTCATTATACATT 58.637 34.615 13.17 0.00 0.00 2.71
1981 3523 7.862372 GTGCACATTCCGATTCATTATACATTT 59.138 33.333 13.17 0.00 0.00 2.32
1991 3533 9.553418 CGATTCATTATACATTTTCACACAACA 57.447 29.630 0.00 0.00 0.00 3.33
2040 3587 1.571919 ACTGAACTGTCGTGTTCTGC 58.428 50.000 17.46 0.00 44.35 4.26
2161 3726 3.568007 GTCTGCACAAACACAATAGGGAA 59.432 43.478 0.00 0.00 0.00 3.97
2209 3774 3.731547 TGGAGATGCCACCAGGAG 58.268 61.111 0.00 0.00 43.33 3.69
2248 3813 2.038557 TGGACAAGTTCACCTTAGCTCC 59.961 50.000 0.00 0.00 0.00 4.70
2305 3880 5.689383 TCACCTTAGCTTTGCAAACTAAG 57.311 39.130 30.26 30.26 41.57 2.18
2632 5472 3.643763 CGGGTTCAAGATATTCTCCGAG 58.356 50.000 0.00 0.00 32.58 4.63
2878 5718 2.345760 GGAGGTGCCAATGCTGGTG 61.346 63.158 0.00 0.00 45.53 4.17
2890 5730 3.887621 ATGCTGGTGTATGAGTACGTT 57.112 42.857 0.00 0.00 33.36 3.99
3070 5912 1.428448 CGAACATCCTGCTTGACGAA 58.572 50.000 0.00 0.00 0.00 3.85
3159 6002 2.790433 GACATTGGTGCAGGGAACTTA 58.210 47.619 0.00 0.00 40.21 2.24
3579 6429 2.138320 AGAGCAACAACGTGATGTGAG 58.862 47.619 0.00 0.00 32.81 3.51
3648 6499 6.934645 AGCACATACACTTTTAGCTTGTAGAA 59.065 34.615 0.00 0.00 0.00 2.10
3687 6541 7.175119 AGGCCTTTTAGTTTGTAGATTGTTCTC 59.825 37.037 0.00 0.00 33.17 2.87
3719 6575 6.004574 GTGGGACTCCTTTTTAAAGTCTGAT 58.995 40.000 4.66 0.00 39.47 2.90
3746 6602 9.474920 ACAAATGTGTAAAGTATTTTGGATGTG 57.525 29.630 0.00 0.00 40.09 3.21
3774 6630 2.859165 AAAAACTGGATCTCGCTCCA 57.141 45.000 0.00 1.96 43.09 3.86
3782 6638 0.179124 GATCTCGCTCCAGTGTCACC 60.179 60.000 0.00 0.00 0.00 4.02
3784 6648 2.523168 TCGCTCCAGTGTCACCCA 60.523 61.111 0.00 0.00 0.00 4.51
3795 6659 2.927856 TCACCCATGGGCGACACT 60.928 61.111 31.73 7.16 39.32 3.55
4073 7177 9.517609 TTGAAATGAGCAAAATTTTCCAAAATG 57.482 25.926 0.00 0.00 38.53 2.32
4077 7181 7.727331 TGAGCAAAATTTTCCAAAATGGTAG 57.273 32.000 0.00 0.00 38.53 3.18
4078 7182 7.504403 TGAGCAAAATTTTCCAAAATGGTAGA 58.496 30.769 0.00 0.00 38.53 2.59
4080 7184 7.508687 AGCAAAATTTTCCAAAATGGTAGACT 58.491 30.769 0.00 0.00 38.53 3.24
4081 7185 8.646900 AGCAAAATTTTCCAAAATGGTAGACTA 58.353 29.630 0.00 0.00 38.53 2.59
4082 7186 8.925700 GCAAAATTTTCCAAAATGGTAGACTAG 58.074 33.333 0.00 0.00 38.53 2.57
4083 7187 8.925700 CAAAATTTTCCAAAATGGTAGACTAGC 58.074 33.333 0.00 4.67 38.53 3.42
4090 7194 4.489306 AAATGGTAGACTAGCCAAGACC 57.511 45.455 9.14 0.00 38.38 3.85
4092 7196 2.897350 TGGTAGACTAGCCAAGACCAA 58.103 47.619 9.14 0.00 34.10 3.67
4096 7200 3.185880 AGACTAGCCAAGACCAACCTA 57.814 47.619 0.00 0.00 0.00 3.08
4104 7208 3.945921 GCCAAGACCAACCTACCTATTTC 59.054 47.826 0.00 0.00 0.00 2.17
4124 7228 1.548719 CCTCCCGGTTCGATATGCATA 59.451 52.381 9.27 9.27 0.00 3.14
4131 7235 3.673594 CGGTTCGATATGCATACCTCTCC 60.674 52.174 8.99 8.51 0.00 3.71
4161 7265 0.391130 CACCAGTCCACCATACACCG 60.391 60.000 0.00 0.00 0.00 4.94
4170 7274 2.355716 CCACCATACACCGAACTCCATT 60.356 50.000 0.00 0.00 0.00 3.16
4174 7278 0.981183 TACACCGAACTCCATTGCCT 59.019 50.000 0.00 0.00 0.00 4.75
4208 7312 9.833917 AGTATGCTAGTATATAGTATCTCGCAA 57.166 33.333 11.25 2.59 33.68 4.85
4231 7364 0.246086 AGCGAGCAACCAGAGAAGAG 59.754 55.000 0.00 0.00 0.00 2.85
4237 7370 1.736681 GCAACCAGAGAAGAGCATGTC 59.263 52.381 0.00 0.00 0.00 3.06
4243 7376 3.178267 CAGAGAAGAGCATGTCGAGAAC 58.822 50.000 0.00 0.00 0.00 3.01
4246 7379 0.737715 AAGAGCATGTCGAGAACGGC 60.738 55.000 0.00 0.00 44.90 5.68
4281 7414 3.245948 CTGGTCGTGCTGCACTTGC 62.246 63.158 28.04 17.59 42.50 4.01
4286 7419 2.333938 GTGCTGCACTTGCTGGTG 59.666 61.111 24.68 5.49 42.66 4.17
4289 7422 2.912624 GCTGCACTTGCTGGTGGTC 61.913 63.158 9.78 0.00 42.66 4.02
4291 7424 4.030452 GCACTTGCTGGTGGTCGC 62.030 66.667 10.58 0.00 37.65 5.19
4292 7425 3.716006 CACTTGCTGGTGGTCGCG 61.716 66.667 0.00 0.00 33.95 5.87
4294 7427 4.988598 CTTGCTGGTGGTCGCGGT 62.989 66.667 6.13 0.00 0.00 5.68
4352 8828 1.002366 GACAGCTGCGGTAACATCAG 58.998 55.000 15.27 0.00 39.16 2.90
4396 8872 3.524606 TAGGCTGCTACCGCGACC 61.525 66.667 8.23 0.00 39.65 4.79
4425 8916 2.126850 CAGCTCGAGTGCGACGAA 60.127 61.111 15.13 0.00 42.51 3.85
4428 8919 2.224885 GCTCGAGTGCGACGAATCC 61.225 63.158 15.13 0.00 42.51 3.01
4430 8921 2.099638 CGAGTGCGACGAATCCGA 59.900 61.111 0.00 0.00 40.82 4.55
4431 8922 1.298413 CGAGTGCGACGAATCCGAT 60.298 57.895 0.00 0.00 40.82 4.18
4432 8923 0.866061 CGAGTGCGACGAATCCGATT 60.866 55.000 0.00 0.00 40.82 3.34
4463 8954 2.441348 TCCGCGCCTCACCATCTA 60.441 61.111 0.00 0.00 0.00 1.98
4467 8958 2.279517 CGCCTCACCATCTACGGC 60.280 66.667 0.00 0.00 37.40 5.68
4469 8960 1.522569 GCCTCACCATCTACGGCTT 59.477 57.895 0.00 0.00 37.76 4.35
4472 8963 1.202463 CCTCACCATCTACGGCTTCAG 60.202 57.143 0.00 0.00 0.00 3.02
4476 8967 1.293924 CCATCTACGGCTTCAGCAAG 58.706 55.000 0.30 0.00 44.36 4.01
4495 8986 4.208686 GCCTAGCGTGACGGAGGG 62.209 72.222 7.25 0.00 0.00 4.30
4496 8987 2.439701 CCTAGCGTGACGGAGGGA 60.440 66.667 7.25 0.00 0.00 4.20
4497 8988 2.482333 CCTAGCGTGACGGAGGGAG 61.482 68.421 7.25 0.00 0.00 4.30
4498 8989 1.451567 CTAGCGTGACGGAGGGAGA 60.452 63.158 7.25 0.00 0.00 3.71
4499 8990 1.001764 TAGCGTGACGGAGGGAGAA 60.002 57.895 7.25 0.00 0.00 2.87
4501 8992 2.341101 GCGTGACGGAGGGAGAAGA 61.341 63.158 7.25 0.00 0.00 2.87
4502 8993 1.874345 GCGTGACGGAGGGAGAAGAA 61.874 60.000 7.25 0.00 0.00 2.52
4503 8994 0.171455 CGTGACGGAGGGAGAAGAAG 59.829 60.000 0.00 0.00 0.00 2.85
4504 8995 0.108567 GTGACGGAGGGAGAAGAAGC 60.109 60.000 0.00 0.00 0.00 3.86
4505 8996 0.251832 TGACGGAGGGAGAAGAAGCT 60.252 55.000 0.00 0.00 0.00 3.74
4506 8997 1.005569 TGACGGAGGGAGAAGAAGCTA 59.994 52.381 0.00 0.00 0.00 3.32
4507 8998 2.312390 GACGGAGGGAGAAGAAGCTAT 58.688 52.381 0.00 0.00 0.00 2.97
4511 9002 3.498841 CGGAGGGAGAAGAAGCTATAGGA 60.499 52.174 1.04 0.00 0.00 2.94
4512 9003 4.683643 GGAGGGAGAAGAAGCTATAGGAT 58.316 47.826 1.04 0.00 0.00 3.24
4513 9004 5.090845 GGAGGGAGAAGAAGCTATAGGATT 58.909 45.833 1.04 0.00 0.00 3.01
4514 9005 5.186992 GGAGGGAGAAGAAGCTATAGGATTC 59.813 48.000 1.04 0.00 40.30 2.52
4515 9006 5.721225 AGGGAGAAGAAGCTATAGGATTCA 58.279 41.667 1.04 0.00 42.22 2.57
4516 9007 6.146760 AGGGAGAAGAAGCTATAGGATTCAA 58.853 40.000 1.04 0.00 42.22 2.69
4518 9009 6.183361 GGGAGAAGAAGCTATAGGATTCAACA 60.183 42.308 1.04 0.00 42.22 3.33
4519 9010 6.704050 GGAGAAGAAGCTATAGGATTCAACAC 59.296 42.308 1.04 0.00 42.22 3.32
4522 9013 6.552445 AGAAGCTATAGGATTCAACACACT 57.448 37.500 1.04 0.00 42.22 3.55
4524 9015 7.398024 AGAAGCTATAGGATTCAACACACTTT 58.602 34.615 1.04 0.00 42.22 2.66
4525 9016 6.992063 AGCTATAGGATTCAACACACTTTG 57.008 37.500 1.04 0.00 0.00 2.77
4527 9018 7.341805 AGCTATAGGATTCAACACACTTTGAT 58.658 34.615 1.04 0.00 35.42 2.57
4528 9019 7.831193 AGCTATAGGATTCAACACACTTTGATT 59.169 33.333 1.04 0.00 35.42 2.57
4529 9020 9.109393 GCTATAGGATTCAACACACTTTGATTA 57.891 33.333 1.04 0.00 35.42 1.75
4531 9022 6.259550 AGGATTCAACACACTTTGATTAGC 57.740 37.500 0.00 0.00 35.42 3.09
4532 9023 6.006449 AGGATTCAACACACTTTGATTAGCT 58.994 36.000 0.00 0.00 35.42 3.32
4533 9024 6.150140 AGGATTCAACACACTTTGATTAGCTC 59.850 38.462 0.00 0.00 35.42 4.09
4534 9025 6.150140 GGATTCAACACACTTTGATTAGCTCT 59.850 38.462 0.00 0.00 35.42 4.09
4536 9027 4.214119 TCAACACACTTTGATTAGCTCTGC 59.786 41.667 0.00 0.00 30.29 4.26
4538 9029 2.094894 CACACTTTGATTAGCTCTGCGG 59.905 50.000 0.00 0.00 0.00 5.69
4539 9030 1.063174 CACTTTGATTAGCTCTGCGGC 59.937 52.381 0.00 0.00 0.00 6.53
4542 9033 0.536724 TTGATTAGCTCTGCGGCTGA 59.463 50.000 9.28 9.28 43.01 4.26
4543 9034 0.103755 TGATTAGCTCTGCGGCTGAG 59.896 55.000 26.67 26.67 43.01 3.35
4544 9035 0.599728 GATTAGCTCTGCGGCTGAGG 60.600 60.000 29.98 16.57 43.01 3.86
4545 9036 1.045350 ATTAGCTCTGCGGCTGAGGA 61.045 55.000 29.98 10.90 43.01 3.71
4546 9037 1.045350 TTAGCTCTGCGGCTGAGGAT 61.045 55.000 29.98 16.60 43.01 3.24
4548 9039 0.831288 AGCTCTGCGGCTGAGGATAT 60.831 55.000 29.98 6.30 41.43 1.63
4549 9040 0.891373 GCTCTGCGGCTGAGGATATA 59.109 55.000 29.98 1.26 31.52 0.86
4550 9041 1.480137 GCTCTGCGGCTGAGGATATAT 59.520 52.381 29.98 0.00 31.52 0.86
4551 9042 2.690497 GCTCTGCGGCTGAGGATATATA 59.310 50.000 29.98 0.00 31.52 0.86
4552 9043 3.490078 GCTCTGCGGCTGAGGATATATAC 60.490 52.174 29.98 12.94 31.52 1.47
4553 9044 3.696548 CTCTGCGGCTGAGGATATATACA 59.303 47.826 24.26 0.00 0.00 2.29
4555 9046 5.445964 TCTGCGGCTGAGGATATATACATA 58.554 41.667 5.38 0.00 0.00 2.29
4556 9047 5.299531 TCTGCGGCTGAGGATATATACATAC 59.700 44.000 5.38 0.00 0.00 2.39
4557 9048 4.953579 TGCGGCTGAGGATATATACATACA 59.046 41.667 0.00 0.00 0.00 2.29
4558 9049 5.598417 TGCGGCTGAGGATATATACATACAT 59.402 40.000 0.00 0.00 0.00 2.29
4559 9050 6.775629 TGCGGCTGAGGATATATACATACATA 59.224 38.462 0.00 0.00 0.00 2.29
4560 9051 7.451566 TGCGGCTGAGGATATATACATACATAT 59.548 37.037 0.00 0.00 0.00 1.78
4561 9052 8.957466 GCGGCTGAGGATATATACATACATATA 58.043 37.037 0.00 0.00 0.00 0.86
4587 9078 7.857404 ATATATTCCTACAAGCAGTGGTAGT 57.143 36.000 0.00 0.00 36.17 2.73
4589 9080 7.670605 ATATTCCTACAAGCAGTGGTAGTTA 57.329 36.000 0.00 0.00 36.17 2.24
4602 9093 1.270465 GGTAGTTACCACCACTTGCGT 60.270 52.381 3.45 0.00 45.73 5.24
4603 9094 2.486918 GTAGTTACCACCACTTGCGTT 58.513 47.619 0.00 0.00 0.00 4.84
4604 9095 2.047002 AGTTACCACCACTTGCGTTT 57.953 45.000 0.00 0.00 0.00 3.60
4606 9097 2.098443 AGTTACCACCACTTGCGTTTTG 59.902 45.455 0.00 0.00 0.00 2.44
4607 9098 1.752683 TACCACCACTTGCGTTTTGT 58.247 45.000 0.00 0.00 0.00 2.83
4608 9099 1.752683 ACCACCACTTGCGTTTTGTA 58.247 45.000 0.00 0.00 0.00 2.41
4609 9100 2.303175 ACCACCACTTGCGTTTTGTAT 58.697 42.857 0.00 0.00 0.00 2.29
4610 9101 2.034053 ACCACCACTTGCGTTTTGTATG 59.966 45.455 0.00 0.00 0.00 2.39
4611 9102 2.034053 CCACCACTTGCGTTTTGTATGT 59.966 45.455 0.00 0.00 0.00 2.29
4613 9104 3.485378 CACCACTTGCGTTTTGTATGTTG 59.515 43.478 0.00 0.00 0.00 3.33
4614 9105 3.129638 ACCACTTGCGTTTTGTATGTTGT 59.870 39.130 0.00 0.00 0.00 3.32
4615 9106 4.335874 ACCACTTGCGTTTTGTATGTTGTA 59.664 37.500 0.00 0.00 0.00 2.41
4616 9107 5.009210 ACCACTTGCGTTTTGTATGTTGTAT 59.991 36.000 0.00 0.00 0.00 2.29
4617 9108 5.341993 CCACTTGCGTTTTGTATGTTGTATG 59.658 40.000 0.00 0.00 0.00 2.39
4618 9109 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
4620 9111 7.588123 CACTTGCGTTTTGTATGTTGTATGTAA 59.412 33.333 0.00 0.00 0.00 2.41
4621 9112 8.293867 ACTTGCGTTTTGTATGTTGTATGTAAT 58.706 29.630 0.00 0.00 0.00 1.89
4622 9113 9.762062 CTTGCGTTTTGTATGTTGTATGTAATA 57.238 29.630 0.00 0.00 0.00 0.98
4624 9115 9.923786 TGCGTTTTGTATGTTGTATGTAATATC 57.076 29.630 0.00 0.00 0.00 1.63
4634 9125 8.415192 TGTTGTATGTAATATCTGTCGAAACC 57.585 34.615 0.00 0.00 0.00 3.27
4635 9126 7.221259 TGTTGTATGTAATATCTGTCGAAACCG 59.779 37.037 0.00 0.00 0.00 4.44
4636 9127 7.030075 TGTATGTAATATCTGTCGAAACCGA 57.970 36.000 0.00 0.00 0.00 4.69
4637 9128 7.136772 TGTATGTAATATCTGTCGAAACCGAG 58.863 38.462 0.00 0.00 36.66 4.63
4638 9129 5.823209 TGTAATATCTGTCGAAACCGAGA 57.177 39.130 0.00 0.00 36.66 4.04
4640 9131 4.985538 AATATCTGTCGAAACCGAGAGT 57.014 40.909 10.88 3.24 44.63 3.24
4641 9132 6.539826 TGTAATATCTGTCGAAACCGAGAGTA 59.460 38.462 10.88 4.95 44.63 2.59
4642 9133 6.636562 AATATCTGTCGAAACCGAGAGTAT 57.363 37.500 10.88 6.58 44.63 2.12
4643 9134 3.759527 TCTGTCGAAACCGAGAGTATG 57.240 47.619 10.88 0.00 44.63 2.39
4645 9136 4.256110 TCTGTCGAAACCGAGAGTATGTA 58.744 43.478 10.88 0.00 44.63 2.29
4646 9137 4.093998 TCTGTCGAAACCGAGAGTATGTAC 59.906 45.833 10.88 0.00 44.63 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.886960 AGCAGGTCAATAGAAACAACATC 57.113 39.130 0.00 0.00 0.00 3.06
1 2 6.040842 ACAAAGCAGGTCAATAGAAACAACAT 59.959 34.615 0.00 0.00 0.00 2.71
2 3 5.359576 ACAAAGCAGGTCAATAGAAACAACA 59.640 36.000 0.00 0.00 0.00 3.33
3 4 5.831997 ACAAAGCAGGTCAATAGAAACAAC 58.168 37.500 0.00 0.00 0.00 3.32
4 5 7.500892 TCTTACAAAGCAGGTCAATAGAAACAA 59.499 33.333 0.00 0.00 0.00 2.83
5 6 6.995686 TCTTACAAAGCAGGTCAATAGAAACA 59.004 34.615 0.00 0.00 0.00 2.83
6 7 7.387948 TCTCTTACAAAGCAGGTCAATAGAAAC 59.612 37.037 0.00 0.00 0.00 2.78
7 8 7.450074 TCTCTTACAAAGCAGGTCAATAGAAA 58.550 34.615 0.00 0.00 0.00 2.52
8 9 7.004555 TCTCTTACAAAGCAGGTCAATAGAA 57.995 36.000 0.00 0.00 0.00 2.10
9 10 6.605471 TCTCTTACAAAGCAGGTCAATAGA 57.395 37.500 0.00 0.00 0.00 1.98
10 11 7.856145 ATTCTCTTACAAAGCAGGTCAATAG 57.144 36.000 0.00 0.00 0.00 1.73
11 12 8.514594 CAAATTCTCTTACAAAGCAGGTCAATA 58.485 33.333 0.00 0.00 0.00 1.90
12 13 7.231317 TCAAATTCTCTTACAAAGCAGGTCAAT 59.769 33.333 0.00 0.00 0.00 2.57
13 14 6.545666 TCAAATTCTCTTACAAAGCAGGTCAA 59.454 34.615 0.00 0.00 0.00 3.18
14 15 6.061441 TCAAATTCTCTTACAAAGCAGGTCA 58.939 36.000 0.00 0.00 0.00 4.02
15 16 6.560253 TCAAATTCTCTTACAAAGCAGGTC 57.440 37.500 0.00 0.00 0.00 3.85
16 17 6.716628 TGATCAAATTCTCTTACAAAGCAGGT 59.283 34.615 0.00 0.00 0.00 4.00
17 18 7.149569 TGATCAAATTCTCTTACAAAGCAGG 57.850 36.000 0.00 0.00 0.00 4.85
18 19 8.456471 TGATGATCAAATTCTCTTACAAAGCAG 58.544 33.333 0.00 0.00 0.00 4.24
19 20 8.239314 GTGATGATCAAATTCTCTTACAAAGCA 58.761 33.333 0.00 0.00 0.00 3.91
20 21 7.699812 GGTGATGATCAAATTCTCTTACAAAGC 59.300 37.037 0.00 0.00 0.00 3.51
21 22 8.954350 AGGTGATGATCAAATTCTCTTACAAAG 58.046 33.333 0.00 0.00 0.00 2.77
22 23 8.868522 AGGTGATGATCAAATTCTCTTACAAA 57.131 30.769 0.00 0.00 0.00 2.83
23 24 8.733458 CAAGGTGATGATCAAATTCTCTTACAA 58.267 33.333 0.00 0.00 0.00 2.41
24 25 7.884877 ACAAGGTGATGATCAAATTCTCTTACA 59.115 33.333 0.00 0.00 0.00 2.41
25 26 8.273780 ACAAGGTGATGATCAAATTCTCTTAC 57.726 34.615 0.00 0.00 0.00 2.34
27 28 9.118300 GATACAAGGTGATGATCAAATTCTCTT 57.882 33.333 0.00 0.00 0.00 2.85
28 29 7.440556 CGATACAAGGTGATGATCAAATTCTCT 59.559 37.037 0.00 0.00 0.00 3.10
29 30 7.439356 TCGATACAAGGTGATGATCAAATTCTC 59.561 37.037 0.00 0.00 0.00 2.87
30 31 7.275183 TCGATACAAGGTGATGATCAAATTCT 58.725 34.615 0.00 0.00 0.00 2.40
31 32 7.482654 TCGATACAAGGTGATGATCAAATTC 57.517 36.000 0.00 0.00 0.00 2.17
32 33 8.455903 AATCGATACAAGGTGATGATCAAATT 57.544 30.769 0.00 0.00 0.00 1.82
33 34 8.347771 CAAATCGATACAAGGTGATGATCAAAT 58.652 33.333 0.00 0.00 0.00 2.32
34 35 7.201723 CCAAATCGATACAAGGTGATGATCAAA 60.202 37.037 0.00 0.00 0.00 2.69
35 36 6.260714 CCAAATCGATACAAGGTGATGATCAA 59.739 38.462 0.00 0.00 0.00 2.57
36 37 5.759763 CCAAATCGATACAAGGTGATGATCA 59.240 40.000 0.00 0.00 0.00 2.92
37 38 5.334414 GCCAAATCGATACAAGGTGATGATC 60.334 44.000 0.00 0.00 0.00 2.92
38 39 4.516698 GCCAAATCGATACAAGGTGATGAT 59.483 41.667 0.00 0.00 0.00 2.45
84 85 4.950050 AGATCTCAAAACAGACGTTCACT 58.050 39.130 0.00 0.00 32.91 3.41
86 87 5.051039 CGAAAGATCTCAAAACAGACGTTCA 60.051 40.000 0.00 0.00 32.91 3.18
90 91 3.423645 GCCGAAAGATCTCAAAACAGACG 60.424 47.826 0.00 0.00 0.00 4.18
99 100 3.748048 CACAGAAAAGCCGAAAGATCTCA 59.252 43.478 0.00 0.00 0.00 3.27
109 110 1.497991 TCGAAGACACAGAAAAGCCG 58.502 50.000 0.00 0.00 0.00 5.52
136 137 7.934665 TGTACCAAAACTCTGCTTCAATACTTA 59.065 33.333 0.00 0.00 0.00 2.24
142 143 3.630312 GGTGTACCAAAACTCTGCTTCAA 59.370 43.478 0.00 0.00 35.64 2.69
143 144 3.118038 AGGTGTACCAAAACTCTGCTTCA 60.118 43.478 3.56 0.00 38.89 3.02
182 183 5.046950 ACCCTCTCATCTCACAAGTTAACTC 60.047 44.000 8.95 0.00 0.00 3.01
219 220 8.566109 ACCTTTCACTAATTACCCCTGAATTAT 58.434 33.333 0.00 0.00 30.41 1.28
243 244 4.447325 GGAAGATTAATCCCACCCCTAACC 60.447 50.000 11.92 0.00 0.00 2.85
244 245 4.726583 GGAAGATTAATCCCACCCCTAAC 58.273 47.826 11.92 0.00 0.00 2.34
252 253 2.483547 TCCCACGGAAGATTAATCCCA 58.516 47.619 11.92 0.00 33.13 4.37
264 265 4.342951 ACTTATGAACGATATTCCCACGGA 59.657 41.667 0.00 0.00 0.00 4.69
304 305 7.111247 TGGAAATGTCATCTCACTTTTGTTT 57.889 32.000 0.00 0.00 0.00 2.83
335 337 5.637387 CCGAAAAAGTTCCCATTTTACATGG 59.363 40.000 0.00 0.00 38.88 3.66
347 349 2.482864 TGGTCGTACCGAAAAAGTTCC 58.517 47.619 0.00 0.00 42.58 3.62
348 350 4.201802 TGTTTGGTCGTACCGAAAAAGTTC 60.202 41.667 7.91 0.00 42.97 3.01
358 360 0.236449 CGGCTTTGTTTGGTCGTACC 59.764 55.000 0.00 0.00 39.22 3.34
364 366 0.033366 GCAATCCGGCTTTGTTTGGT 59.967 50.000 15.58 0.00 0.00 3.67
369 371 1.579429 GTTCGCAATCCGGCTTTGT 59.421 52.632 15.58 0.00 37.59 2.83
378 380 0.240945 CCACTGGTTGGTTCGCAATC 59.759 55.000 0.00 0.00 41.10 2.67
405 407 4.561254 AGGATACCAGTGTCCTCCTAAT 57.439 45.455 10.07 0.00 46.49 1.73
418 420 1.622449 CCCTGGTGACTGAGGATACCA 60.622 57.143 3.20 4.98 40.67 3.25
421 423 0.339859 AGCCCTGGTGACTGAGGATA 59.660 55.000 3.20 0.00 0.00 2.59
429 431 0.957888 GAAGCTTGAGCCCTGGTGAC 60.958 60.000 2.10 0.00 43.38 3.67
430 432 1.376466 GAAGCTTGAGCCCTGGTGA 59.624 57.895 2.10 0.00 43.38 4.02
433 435 0.886563 CTTTGAAGCTTGAGCCCTGG 59.113 55.000 2.10 0.00 43.38 4.45
436 438 1.956477 TCAACTTTGAAGCTTGAGCCC 59.044 47.619 2.10 0.00 35.23 5.19
439 441 5.008415 ACTGATGTCAACTTTGAAGCTTGAG 59.992 40.000 2.10 1.24 39.21 3.02
445 447 4.825546 AGCACTGATGTCAACTTTGAAG 57.174 40.909 0.00 0.00 39.21 3.02
448 450 3.047796 GCAAGCACTGATGTCAACTTTG 58.952 45.455 0.00 0.00 0.00 2.77
450 452 2.300433 TGCAAGCACTGATGTCAACTT 58.700 42.857 0.00 0.00 0.00 2.66
476 478 7.750655 ACCCCAAAAGCTTAAAATAAATCCAA 58.249 30.769 0.00 0.00 0.00 3.53
478 480 6.533723 CGACCCCAAAAGCTTAAAATAAATCC 59.466 38.462 0.00 0.00 0.00 3.01
490 492 0.037605 CGTAGTCGACCCCAAAAGCT 60.038 55.000 13.01 0.00 39.71 3.74
496 498 2.115910 ACCACGTAGTCGACCCCA 59.884 61.111 13.01 0.00 41.61 4.96
497 499 1.809567 AACACCACGTAGTCGACCCC 61.810 60.000 13.01 1.56 41.61 4.95
509 511 1.134175 CCAAGTCACCACAAACACCAC 59.866 52.381 0.00 0.00 0.00 4.16
510 512 1.272203 ACCAAGTCACCACAAACACCA 60.272 47.619 0.00 0.00 0.00 4.17
517 519 2.437651 TGAGATTGACCAAGTCACCACA 59.562 45.455 0.00 0.00 42.60 4.17
528 530 6.238320 GCAGTCATAACATCTTGAGATTGACC 60.238 42.308 15.04 3.62 38.43 4.02
549 551 2.499289 CACCTCCAATAGACTGAGCAGT 59.501 50.000 2.20 2.20 45.84 4.40
552 554 1.484240 AGCACCTCCAATAGACTGAGC 59.516 52.381 0.00 0.00 0.00 4.26
563 565 1.141657 GCATTCCTATGAGCACCTCCA 59.858 52.381 0.00 0.00 33.37 3.86
564 566 1.875576 CGCATTCCTATGAGCACCTCC 60.876 57.143 0.00 0.00 33.37 4.30
568 570 2.009774 ACAACGCATTCCTATGAGCAC 58.990 47.619 0.00 0.00 35.25 4.40
577 579 1.790123 CGCACATACACAACGCATTCC 60.790 52.381 0.00 0.00 0.00 3.01
579 581 0.871722 ACGCACATACACAACGCATT 59.128 45.000 0.00 0.00 0.00 3.56
580 582 0.871722 AACGCACATACACAACGCAT 59.128 45.000 0.00 0.00 0.00 4.73
581 583 0.658368 AAACGCACATACACAACGCA 59.342 45.000 0.00 0.00 0.00 5.24
582 584 2.580729 TAAACGCACATACACAACGC 57.419 45.000 0.00 0.00 0.00 4.84
583 585 5.005875 TCCATATAAACGCACATACACAACG 59.994 40.000 0.00 0.00 0.00 4.10
586 588 7.929245 ACTTATCCATATAAACGCACATACACA 59.071 33.333 0.00 0.00 0.00 3.72
587 589 8.306680 ACTTATCCATATAAACGCACATACAC 57.693 34.615 0.00 0.00 0.00 2.90
588 590 8.896320 AACTTATCCATATAAACGCACATACA 57.104 30.769 0.00 0.00 0.00 2.29
592 594 8.286800 GCATAAACTTATCCATATAAACGCACA 58.713 33.333 0.00 0.00 0.00 4.57
606 608 7.694388 TCACATACACGAGCATAAACTTATC 57.306 36.000 0.00 0.00 0.00 1.75
633 635 1.940613 GAGAACAGCACAACCGAAGTT 59.059 47.619 0.00 0.00 36.33 2.66
634 636 1.139058 AGAGAACAGCACAACCGAAGT 59.861 47.619 0.00 0.00 0.00 3.01
635 637 1.795286 GAGAGAACAGCACAACCGAAG 59.205 52.381 0.00 0.00 0.00 3.79
636 638 1.138069 TGAGAGAACAGCACAACCGAA 59.862 47.619 0.00 0.00 0.00 4.30
637 639 0.750249 TGAGAGAACAGCACAACCGA 59.250 50.000 0.00 0.00 0.00 4.69
638 640 1.581934 TTGAGAGAACAGCACAACCG 58.418 50.000 0.00 0.00 0.00 4.44
639 641 4.370364 TTTTTGAGAGAACAGCACAACC 57.630 40.909 0.00 0.00 0.00 3.77
668 670 8.918961 TTTAACACATCACAATCGAAGTTTTT 57.081 26.923 0.00 0.00 0.00 1.94
669 671 8.918961 TTTTAACACATCACAATCGAAGTTTT 57.081 26.923 0.00 0.00 0.00 2.43
670 672 8.918961 TTTTTAACACATCACAATCGAAGTTT 57.081 26.923 0.00 0.00 0.00 2.66
699 701 1.141053 AGAACTTCTGTCCGGCTTTGT 59.859 47.619 0.00 0.00 0.00 2.83
700 702 1.801178 GAGAACTTCTGTCCGGCTTTG 59.199 52.381 0.00 0.00 0.00 2.77
703 705 0.832135 TGGAGAACTTCTGTCCGGCT 60.832 55.000 0.00 0.00 40.55 5.52
704 706 0.670854 GTGGAGAACTTCTGTCCGGC 60.671 60.000 0.00 0.00 40.55 6.13
709 725 0.249911 GCCACGTGGAGAACTTCTGT 60.250 55.000 38.30 0.00 37.39 3.41
744 760 3.426568 GACGCTCCAGCCAGTTGC 61.427 66.667 0.00 0.00 41.71 4.17
745 761 2.031012 TGACGCTCCAGCCAGTTG 59.969 61.111 0.00 0.00 37.91 3.16
746 762 1.185618 TACTGACGCTCCAGCCAGTT 61.186 55.000 13.56 2.29 41.49 3.16
747 763 1.185618 TTACTGACGCTCCAGCCAGT 61.186 55.000 13.07 13.07 42.95 4.00
748 764 0.459237 CTTACTGACGCTCCAGCCAG 60.459 60.000 3.94 3.94 37.68 4.85
749 765 1.185618 ACTTACTGACGCTCCAGCCA 61.186 55.000 2.61 0.00 37.68 4.75
751 767 1.071605 CAACTTACTGACGCTCCAGC 58.928 55.000 2.61 0.00 37.68 4.85
752 768 2.600731 CTCAACTTACTGACGCTCCAG 58.399 52.381 1.31 1.31 39.93 3.86
753 769 1.336887 GCTCAACTTACTGACGCTCCA 60.337 52.381 0.00 0.00 0.00 3.86
754 770 1.067495 AGCTCAACTTACTGACGCTCC 60.067 52.381 0.00 0.00 29.44 4.70
755 771 1.989165 CAGCTCAACTTACTGACGCTC 59.011 52.381 0.00 0.00 31.60 5.03
757 773 1.457303 CACAGCTCAACTTACTGACGC 59.543 52.381 0.00 0.00 35.38 5.19
759 775 3.491267 GTCACACAGCTCAACTTACTGAC 59.509 47.826 0.00 0.00 35.38 3.51
760 776 3.492656 GGTCACACAGCTCAACTTACTGA 60.493 47.826 0.00 0.00 35.38 3.41
761 777 2.802816 GGTCACACAGCTCAACTTACTG 59.197 50.000 0.00 0.00 37.45 2.74
772 956 0.882042 CACAGTCCTGGTCACACAGC 60.882 60.000 0.00 0.00 37.16 4.40
773 957 0.882042 GCACAGTCCTGGTCACACAG 60.882 60.000 0.00 0.00 38.21 3.66
777 961 1.956170 CACGCACAGTCCTGGTCAC 60.956 63.158 0.00 0.00 34.19 3.67
778 962 2.131067 TCACGCACAGTCCTGGTCA 61.131 57.895 0.00 0.00 34.19 4.02
779 963 1.664965 GTCACGCACAGTCCTGGTC 60.665 63.158 0.00 0.00 34.19 4.02
780 964 1.966901 TTGTCACGCACAGTCCTGGT 61.967 55.000 0.00 0.00 35.97 4.00
781 965 0.603707 ATTGTCACGCACAGTCCTGG 60.604 55.000 0.00 0.00 35.97 4.45
782 966 0.792640 GATTGTCACGCACAGTCCTG 59.207 55.000 0.48 0.00 36.05 3.86
783 967 0.681733 AGATTGTCACGCACAGTCCT 59.318 50.000 6.91 0.00 41.64 3.85
784 968 0.792640 CAGATTGTCACGCACAGTCC 59.207 55.000 6.91 0.00 41.64 3.85
785 969 0.164647 GCAGATTGTCACGCACAGTC 59.835 55.000 3.21 3.21 41.13 3.51
786 970 1.560004 CGCAGATTGTCACGCACAGT 61.560 55.000 0.00 0.00 35.97 3.55
787 971 1.131218 CGCAGATTGTCACGCACAG 59.869 57.895 0.00 0.00 35.97 3.66
788 972 1.556591 GACGCAGATTGTCACGCACA 61.557 55.000 0.00 0.00 36.37 4.57
789 973 1.130613 GACGCAGATTGTCACGCAC 59.869 57.895 0.00 0.00 36.37 5.34
792 976 0.179240 GCTTGACGCAGATTGTCACG 60.179 55.000 0.00 0.00 45.42 4.35
810 994 5.174579 GGACGAGTACTAATAAATGTTCCGC 59.825 44.000 0.00 0.00 0.00 5.54
817 1001 9.352191 AGTCTACATGGACGAGTACTAATAAAT 57.648 33.333 0.00 0.00 40.76 1.40
818 1002 8.618677 CAGTCTACATGGACGAGTACTAATAAA 58.381 37.037 0.00 0.00 40.76 1.40
820 1004 6.709397 CCAGTCTACATGGACGAGTACTAATA 59.291 42.308 0.00 0.00 40.51 0.98
821 1005 5.531659 CCAGTCTACATGGACGAGTACTAAT 59.468 44.000 0.00 0.00 40.51 1.73
823 1007 4.080695 ACCAGTCTACATGGACGAGTACTA 60.081 45.833 0.00 0.00 40.51 1.82
826 1010 3.054582 AGACCAGTCTACATGGACGAGTA 60.055 47.826 0.00 0.00 40.51 2.59
828 1012 2.370349 AGACCAGTCTACATGGACGAG 58.630 52.381 0.00 0.00 40.51 4.18
829 1013 2.509166 AGACCAGTCTACATGGACGA 57.491 50.000 0.00 0.00 40.51 4.20
830 1014 3.442625 TGTAAGACCAGTCTACATGGACG 59.557 47.826 0.00 0.00 40.51 4.79
832 1016 4.023980 CCTGTAAGACCAGTCTACATGGA 58.976 47.826 0.00 0.00 41.25 3.41
834 1018 6.153000 ACTTACCTGTAAGACCAGTCTACATG 59.847 42.308 20.75 6.10 43.90 3.21
835 1019 6.254522 ACTTACCTGTAAGACCAGTCTACAT 58.745 40.000 20.75 0.00 43.90 2.29
836 1020 5.638133 ACTTACCTGTAAGACCAGTCTACA 58.362 41.667 20.75 5.56 43.90 2.74
837 1021 6.208204 TGAACTTACCTGTAAGACCAGTCTAC 59.792 42.308 20.75 1.40 43.90 2.59
838 1022 6.309357 TGAACTTACCTGTAAGACCAGTCTA 58.691 40.000 20.75 0.02 43.90 2.59
840 1024 5.464030 TGAACTTACCTGTAAGACCAGTC 57.536 43.478 20.75 11.08 43.90 3.51
841 1025 6.070938 GGTATGAACTTACCTGTAAGACCAGT 60.071 42.308 20.75 10.99 43.90 4.00
842 1026 6.338937 GGTATGAACTTACCTGTAAGACCAG 58.661 44.000 20.75 0.00 43.90 4.00
853 1037 5.023533 TGATGCAGAGGTATGAACTTACC 57.976 43.478 8.30 8.30 41.73 2.85
854 1038 6.989169 AGATTGATGCAGAGGTATGAACTTAC 59.011 38.462 0.00 0.00 0.00 2.34
856 1040 5.821470 CAGATTGATGCAGAGGTATGAACTT 59.179 40.000 0.00 0.00 0.00 2.66
857 1041 5.366460 CAGATTGATGCAGAGGTATGAACT 58.634 41.667 0.00 0.00 0.00 3.01
870 1078 1.134159 AGGGAGTGAGCAGATTGATGC 60.134 52.381 0.00 0.00 46.88 3.91
871 1079 2.169978 TGAGGGAGTGAGCAGATTGATG 59.830 50.000 0.00 0.00 0.00 3.07
872 1080 2.170187 GTGAGGGAGTGAGCAGATTGAT 59.830 50.000 0.00 0.00 0.00 2.57
874 1082 1.738365 CGTGAGGGAGTGAGCAGATTG 60.738 57.143 0.00 0.00 0.00 2.67
875 1083 0.534412 CGTGAGGGAGTGAGCAGATT 59.466 55.000 0.00 0.00 0.00 2.40
876 1084 2.197250 CGTGAGGGAGTGAGCAGAT 58.803 57.895 0.00 0.00 0.00 2.90
877 1085 3.686760 CGTGAGGGAGTGAGCAGA 58.313 61.111 0.00 0.00 0.00 4.26
889 1097 1.021390 GTGGAGGTGAATGCCGTGAG 61.021 60.000 0.00 0.00 0.00 3.51
890 1098 1.003839 GTGGAGGTGAATGCCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
891 1099 2.040544 GGTGGAGGTGAATGCCGTG 61.041 63.158 0.00 0.00 0.00 4.94
892 1100 2.351276 GGTGGAGGTGAATGCCGT 59.649 61.111 0.00 0.00 0.00 5.68
893 1101 2.819595 CGGTGGAGGTGAATGCCG 60.820 66.667 0.00 0.00 0.00 5.69
894 1102 1.745489 GACGGTGGAGGTGAATGCC 60.745 63.158 0.00 0.00 0.00 4.40
895 1103 1.745489 GGACGGTGGAGGTGAATGC 60.745 63.158 0.00 0.00 0.00 3.56
896 1104 0.324943 AAGGACGGTGGAGGTGAATG 59.675 55.000 0.00 0.00 0.00 2.67
897 1105 0.613777 GAAGGACGGTGGAGGTGAAT 59.386 55.000 0.00 0.00 0.00 2.57
898 1106 0.471211 AGAAGGACGGTGGAGGTGAA 60.471 55.000 0.00 0.00 0.00 3.18
899 1107 0.898789 GAGAAGGACGGTGGAGGTGA 60.899 60.000 0.00 0.00 0.00 4.02
900 1108 1.592223 GAGAAGGACGGTGGAGGTG 59.408 63.158 0.00 0.00 0.00 4.00
901 1109 1.977544 CGAGAAGGACGGTGGAGGT 60.978 63.158 0.00 0.00 0.00 3.85
902 1110 1.677966 TCGAGAAGGACGGTGGAGG 60.678 63.158 0.00 0.00 0.00 4.30
903 1111 1.241990 TGTCGAGAAGGACGGTGGAG 61.242 60.000 0.00 0.00 39.83 3.86
904 1112 1.228337 TGTCGAGAAGGACGGTGGA 60.228 57.895 0.00 0.00 39.83 4.02
905 1113 1.080705 GTGTCGAGAAGGACGGTGG 60.081 63.158 0.00 0.00 39.83 4.61
906 1114 1.442184 CGTGTCGAGAAGGACGGTG 60.442 63.158 0.00 0.00 39.83 4.94
907 1115 1.598962 TCGTGTCGAGAAGGACGGT 60.599 57.895 0.00 0.00 39.83 4.83
910 1118 0.109689 CCAGTCGTGTCGAGAAGGAC 60.110 60.000 11.18 11.18 36.23 3.85
919 1127 0.244994 AGCAGATGACCAGTCGTGTC 59.755 55.000 0.00 0.00 0.00 3.67
923 1131 0.529833 AGTGAGCAGATGACCAGTCG 59.470 55.000 0.00 0.00 0.00 4.18
945 1153 1.021390 GTGGAGGTGAATGCCGTGAG 61.021 60.000 0.00 0.00 0.00 3.51
946 1154 1.003839 GTGGAGGTGAATGCCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
947 1155 2.040544 GGTGGAGGTGAATGCCGTG 61.041 63.158 0.00 0.00 0.00 4.94
948 1156 2.351276 GGTGGAGGTGAATGCCGT 59.649 61.111 0.00 0.00 0.00 5.68
949 1157 2.819595 CGGTGGAGGTGAATGCCG 60.820 66.667 0.00 0.00 0.00 5.69
950 1158 1.745489 GACGGTGGAGGTGAATGCC 60.745 63.158 0.00 0.00 0.00 4.40
951 1159 2.100631 CGACGGTGGAGGTGAATGC 61.101 63.158 0.00 0.00 0.00 3.56
952 1160 1.447838 CCGACGGTGGAGGTGAATG 60.448 63.158 5.48 0.00 0.00 2.67
953 1161 1.885163 GACCGACGGTGGAGGTGAAT 61.885 60.000 27.26 0.00 38.57 2.57
954 1162 2.522436 ACCGACGGTGGAGGTGAA 60.522 61.111 21.02 0.00 36.81 3.18
955 1163 2.987547 GACCGACGGTGGAGGTGA 60.988 66.667 27.26 0.00 38.57 4.02
956 1164 4.065281 GGACCGACGGTGGAGGTG 62.065 72.222 27.26 0.00 38.57 4.00
957 1165 3.899545 ATGGACCGACGGTGGAGGT 62.900 63.158 27.26 0.00 41.63 3.85
958 1166 3.075005 ATGGACCGACGGTGGAGG 61.075 66.667 27.26 0.00 35.25 4.30
967 1175 1.453379 GAGGAGGACGATGGACCGA 60.453 63.158 0.00 0.00 32.90 4.69
995 1212 1.482182 TGCTCTGCTCCGACATTACAT 59.518 47.619 0.00 0.00 0.00 2.29
997 1214 1.661112 GTTGCTCTGCTCCGACATTAC 59.339 52.381 0.00 0.00 0.00 1.89
999 1216 0.674895 GGTTGCTCTGCTCCGACATT 60.675 55.000 0.00 0.00 0.00 2.71
1002 1219 1.301716 TTGGTTGCTCTGCTCCGAC 60.302 57.895 0.00 0.00 0.00 4.79
1031 1255 0.700564 AGTGGCCATCCTTGACATGT 59.299 50.000 9.72 0.00 0.00 3.21
1047 1275 3.733380 CGATCAGGAGAAGCAGTACAGTG 60.733 52.174 0.00 0.00 0.00 3.66
1050 1278 2.164422 CACGATCAGGAGAAGCAGTACA 59.836 50.000 0.00 0.00 0.00 2.90
1254 1512 0.108992 TGTAATGGACGACGGTGAGC 60.109 55.000 0.00 0.00 0.00 4.26
1267 1525 1.312371 CCCAGGCGGTGGTTGTAATG 61.312 60.000 3.23 0.00 46.37 1.90
1314 2832 2.125673 GCTTTGAGGTAGGCGCGA 60.126 61.111 12.10 0.00 0.00 5.87
1329 2847 1.755008 GTAGCACTCCCTCCTCGCT 60.755 63.158 0.00 0.00 36.72 4.93
1348 2866 1.522092 CGAGGCTGCCATTGGAGTA 59.478 57.895 22.65 0.00 0.00 2.59
1369 2887 2.028839 ACATGTGGTTCGTGTTCCGATA 60.029 45.455 0.00 0.00 46.75 2.92
1371 2889 0.105224 ACATGTGGTTCGTGTTCCGA 59.895 50.000 0.00 0.00 42.88 4.55
1380 2898 1.614317 CCTTGGAGGGACATGTGGTTC 60.614 57.143 1.15 0.00 0.00 3.62
1382 2906 2.078452 CCTTGGAGGGACATGTGGT 58.922 57.895 1.15 0.00 0.00 4.16
1384 2908 1.746615 CGCCTTGGAGGGACATGTG 60.747 63.158 1.15 0.00 35.37 3.21
1402 2926 1.957765 GACGACAAGAGGTAGGGGGC 61.958 65.000 0.00 0.00 0.00 5.80
1416 2940 2.315386 GCGGTTCTTGGTGGACGAC 61.315 63.158 0.00 0.00 0.00 4.34
1457 2981 1.014564 GTCGACGAAGAAGCCAAGGG 61.015 60.000 0.00 0.00 0.00 3.95
1461 2985 2.257371 CCGTCGACGAAGAAGCCA 59.743 61.111 37.65 0.00 43.02 4.75
1480 3004 0.806102 CCGCTGACGTAGGAACCATG 60.806 60.000 0.00 0.00 37.70 3.66
1482 3006 2.967397 CCGCTGACGTAGGAACCA 59.033 61.111 0.00 0.00 37.70 3.67
1485 3009 0.961857 TACAGCCGCTGACGTAGGAA 60.962 55.000 27.12 0.00 37.70 3.36
1487 3011 1.226603 GTACAGCCGCTGACGTAGG 60.227 63.158 27.12 0.00 37.70 3.18
1503 3027 2.345991 GGCTGGCACAAGGACGTA 59.654 61.111 0.00 0.00 38.70 3.57
1505 3029 4.988598 ACGGCTGGCACAAGGACG 62.989 66.667 1.08 0.00 38.70 4.79
1584 3108 0.960364 GCCGGAAGAAGTTGATGCCA 60.960 55.000 5.05 0.00 0.00 4.92
1600 3124 3.123620 GCTGAGCAGGACAAGCCG 61.124 66.667 0.00 0.00 43.43 5.52
1604 3128 0.035881 CTGGAAGCTGAGCAGGACAA 59.964 55.000 7.39 0.00 0.00 3.18
1606 3130 4.613929 CTGGAAGCTGAGCAGGAC 57.386 61.111 7.39 0.00 0.00 3.85
1641 3165 4.489771 GTGTCATCCTGCCCCCGG 62.490 72.222 0.00 0.00 0.00 5.73
1642 3166 2.762969 TTTGTGTCATCCTGCCCCCG 62.763 60.000 0.00 0.00 0.00 5.73
1643 3167 1.076549 TTTGTGTCATCCTGCCCCC 59.923 57.895 0.00 0.00 0.00 5.40
1658 3182 3.253432 GGAGCTGTTGGTAAAGGAGTTTG 59.747 47.826 0.00 0.00 0.00 2.93
1659 3183 3.117663 TGGAGCTGTTGGTAAAGGAGTTT 60.118 43.478 0.00 0.00 0.00 2.66
1660 3184 2.441750 TGGAGCTGTTGGTAAAGGAGTT 59.558 45.455 0.00 0.00 0.00 3.01
1661 3185 2.054799 TGGAGCTGTTGGTAAAGGAGT 58.945 47.619 0.00 0.00 0.00 3.85
1668 3198 2.345991 GCCGTGGAGCTGTTGGTA 59.654 61.111 0.00 0.00 0.00 3.25
1731 3261 0.318762 GGTTGAGGAAGACGCTGTCT 59.681 55.000 5.54 5.54 45.64 3.41
1761 3291 1.823295 CACGAGGGGGACGATGAAT 59.177 57.895 0.00 0.00 34.70 2.57
1765 3295 3.148279 GAGCACGAGGGGGACGAT 61.148 66.667 0.00 0.00 34.70 3.73
1957 3499 8.801715 AAAATGTATAATGAATCGGAATGTGC 57.198 30.769 0.00 0.00 0.00 4.57
1965 3507 9.553418 TGTTGTGTGAAAATGTATAATGAATCG 57.447 29.630 0.00 0.00 0.00 3.34
1971 3513 8.522003 TGCTGATGTTGTGTGAAAATGTATAAT 58.478 29.630 0.00 0.00 0.00 1.28
1979 3521 9.755804 TTATTATTTGCTGATGTTGTGTGAAAA 57.244 25.926 0.00 0.00 0.00 2.29
1980 3522 9.926158 ATTATTATTTGCTGATGTTGTGTGAAA 57.074 25.926 0.00 0.00 0.00 2.69
2010 3552 3.188048 CGACAGTTCAGTACTTCGGTAGT 59.812 47.826 4.79 0.00 41.04 2.73
2040 3587 7.496920 TGATCAGGCAAATCACAAATCTACTAG 59.503 37.037 0.00 0.00 0.00 2.57
2091 3648 0.388520 TGGCACTCGTCGATGTCTTG 60.389 55.000 4.21 1.91 0.00 3.02
2161 3726 0.332632 AGGGCATTGGCATGTGTAGT 59.667 50.000 12.70 0.00 43.71 2.73
2248 3813 6.701432 AGAAATTACCTGTAACGACTTTCG 57.299 37.500 0.00 0.00 46.93 3.46
2336 3911 7.165485 TGCAAAGCTAAGGTGAACTAGATAAA 58.835 34.615 0.00 0.00 0.00 1.40
2393 5229 9.494271 TGCATCATTAGTTTAGATATCCAAGAC 57.506 33.333 0.00 0.00 0.00 3.01
2632 5472 1.226831 CGCCTTCTCGAGCTCTTCC 60.227 63.158 12.85 0.00 0.00 3.46
2878 5718 3.936453 TGCCATTGGAAACGTACTCATAC 59.064 43.478 6.95 0.00 0.00 2.39
2890 5730 0.623723 GGTAGAGGGTGCCATTGGAA 59.376 55.000 6.95 0.00 0.00 3.53
3035 5877 0.317160 TTCGCCGTCTTGACATCACT 59.683 50.000 1.59 0.00 0.00 3.41
3070 5912 2.024414 GTGACTTTGGCAGTGAGGTTT 58.976 47.619 0.00 0.00 35.01 3.27
3445 6289 0.721718 CAACTTCCTTCATCGACGGC 59.278 55.000 0.00 0.00 0.00 5.68
3579 6429 5.019498 CGTCATGCGGTTTGAACTTATAAC 58.981 41.667 2.16 0.00 36.85 1.89
3655 6509 2.365293 ACAAACTAAAAGGCCTTGCAGG 59.635 45.455 21.33 12.19 38.80 4.85
3656 6510 3.733443 ACAAACTAAAAGGCCTTGCAG 57.267 42.857 21.33 20.57 0.00 4.41
3687 6541 2.292828 AAGGAGTCCCACCAAACATG 57.707 50.000 5.25 0.00 33.88 3.21
3782 6638 0.532862 GTATCCAGTGTCGCCCATGG 60.533 60.000 4.14 4.14 0.00 3.66
3784 6648 1.131638 ATGTATCCAGTGTCGCCCAT 58.868 50.000 0.00 0.00 0.00 4.00
3795 6659 6.378710 TGAAACGTGTTTGAAATGTATCCA 57.621 33.333 2.15 0.00 32.11 3.41
3858 6724 3.658757 TGGCAACTTCACAAATAAGCC 57.341 42.857 0.00 0.00 41.15 4.35
4022 7113 6.406370 AGACCGATTACACTCATTTCATGAA 58.594 36.000 3.38 3.38 39.11 2.57
4023 7114 5.977635 AGACCGATTACACTCATTTCATGA 58.022 37.500 0.00 0.00 37.76 3.07
4024 7115 6.668541 AAGACCGATTACACTCATTTCATG 57.331 37.500 0.00 0.00 0.00 3.07
4037 7137 6.567687 TTTGCTCATTTCAAAGACCGATTA 57.432 33.333 0.00 0.00 0.00 1.75
4073 7177 2.093606 GGTTGGTCTTGGCTAGTCTACC 60.094 54.545 0.00 1.52 0.00 3.18
4077 7181 2.093606 GGTAGGTTGGTCTTGGCTAGTC 60.094 54.545 0.00 0.00 0.00 2.59
4078 7182 1.907255 GGTAGGTTGGTCTTGGCTAGT 59.093 52.381 0.00 0.00 0.00 2.57
4080 7184 2.337359 AGGTAGGTTGGTCTTGGCTA 57.663 50.000 0.00 0.00 0.00 3.93
4081 7185 2.337359 TAGGTAGGTTGGTCTTGGCT 57.663 50.000 0.00 0.00 0.00 4.75
4082 7186 3.646736 AATAGGTAGGTTGGTCTTGGC 57.353 47.619 0.00 0.00 0.00 4.52
4083 7187 4.227527 AGGAAATAGGTAGGTTGGTCTTGG 59.772 45.833 0.00 0.00 0.00 3.61
4090 7194 3.470645 CGGGAGGAAATAGGTAGGTTG 57.529 52.381 0.00 0.00 0.00 3.77
4124 7228 2.183679 GTGATGGAGTTCAGGAGAGGT 58.816 52.381 0.00 0.00 0.00 3.85
4131 7235 1.625315 TGGACTGGTGATGGAGTTCAG 59.375 52.381 0.00 0.00 0.00 3.02
4161 7265 1.599542 GCATACGAGGCAATGGAGTTC 59.400 52.381 0.00 0.00 0.00 3.01
4170 7274 3.289128 GCATACTGCATACGAGGCA 57.711 52.632 0.00 0.00 44.26 4.75
4205 7309 2.180131 CTGGTTGCTCGCTCTGTTGC 62.180 60.000 0.00 0.00 0.00 4.17
4206 7310 0.601046 TCTGGTTGCTCGCTCTGTTG 60.601 55.000 0.00 0.00 0.00 3.33
4208 7312 1.181741 TCTCTGGTTGCTCGCTCTGT 61.182 55.000 0.00 0.00 0.00 3.41
4215 7348 2.008329 CATGCTCTTCTCTGGTTGCTC 58.992 52.381 0.00 0.00 0.00 4.26
4231 7364 2.506217 TCGCCGTTCTCGACATGC 60.506 61.111 0.00 0.00 39.71 4.06
4246 7379 2.874780 GCAGCAGTACGACGGTCG 60.875 66.667 27.33 27.33 46.93 4.79
4251 7384 1.801913 CGACCAGCAGCAGTACGAC 60.802 63.158 0.00 0.00 0.00 4.34
4252 7385 2.265904 ACGACCAGCAGCAGTACGA 61.266 57.895 0.00 0.00 0.00 3.43
4260 7393 3.720193 GTGCAGCACGACCAGCAG 61.720 66.667 10.47 0.00 37.72 4.24
4338 8814 1.421410 GGACGCTGATGTTACCGCAG 61.421 60.000 0.00 0.00 0.00 5.18
4344 8820 1.117150 GGTAGGGGACGCTGATGTTA 58.883 55.000 0.00 0.00 0.00 2.41
4352 8828 3.846430 CGAAGGGGTAGGGGACGC 61.846 72.222 0.00 0.00 40.26 5.19
4379 8855 3.524606 GGTCGCGGTAGCAGCCTA 61.525 66.667 6.13 0.00 45.49 3.93
4467 8958 3.096791 GCTAGGCGCTTGCTGAAG 58.903 61.111 7.64 0.00 39.13 3.02
4482 8973 2.282958 TTCTCCCTCCGTCACGCT 60.283 61.111 0.00 0.00 0.00 5.07
4486 8977 0.251832 AGCTTCTTCTCCCTCCGTCA 60.252 55.000 0.00 0.00 0.00 4.35
4488 8979 2.463047 ATAGCTTCTTCTCCCTCCGT 57.537 50.000 0.00 0.00 0.00 4.69
4490 8981 4.120946 TCCTATAGCTTCTTCTCCCTCC 57.879 50.000 0.00 0.00 0.00 4.30
4491 8982 5.777732 TGAATCCTATAGCTTCTTCTCCCTC 59.222 44.000 0.00 0.00 0.00 4.30
4492 8983 5.721225 TGAATCCTATAGCTTCTTCTCCCT 58.279 41.667 0.00 0.00 0.00 4.20
4493 8984 6.183361 TGTTGAATCCTATAGCTTCTTCTCCC 60.183 42.308 0.00 0.00 0.00 4.30
4494 8985 6.704050 GTGTTGAATCCTATAGCTTCTTCTCC 59.296 42.308 0.00 2.30 0.00 3.71
4495 8986 7.223777 GTGTGTTGAATCCTATAGCTTCTTCTC 59.776 40.741 0.00 8.03 0.00 2.87
4496 8987 7.044798 GTGTGTTGAATCCTATAGCTTCTTCT 58.955 38.462 0.00 0.00 0.00 2.85
4497 8988 7.044798 AGTGTGTTGAATCCTATAGCTTCTTC 58.955 38.462 0.00 5.42 0.00 2.87
4498 8989 6.951971 AGTGTGTTGAATCCTATAGCTTCTT 58.048 36.000 0.00 0.00 0.00 2.52
4499 8990 6.552445 AGTGTGTTGAATCCTATAGCTTCT 57.448 37.500 0.00 0.00 0.00 2.85
4501 8992 7.168219 TCAAAGTGTGTTGAATCCTATAGCTT 58.832 34.615 0.00 0.00 34.59 3.74
4502 8993 6.711277 TCAAAGTGTGTTGAATCCTATAGCT 58.289 36.000 0.00 0.00 34.59 3.32
4503 8994 6.985188 TCAAAGTGTGTTGAATCCTATAGC 57.015 37.500 0.00 0.00 34.59 2.97
4505 8996 9.109393 GCTAATCAAAGTGTGTTGAATCCTATA 57.891 33.333 0.00 0.00 40.76 1.31
4506 8997 7.831193 AGCTAATCAAAGTGTGTTGAATCCTAT 59.169 33.333 0.00 0.00 40.76 2.57
4507 8998 7.168219 AGCTAATCAAAGTGTGTTGAATCCTA 58.832 34.615 0.00 0.00 40.76 2.94
4511 9002 6.569226 GCAGAGCTAATCAAAGTGTGTTGAAT 60.569 38.462 0.00 0.00 40.76 2.57
4512 9003 5.277974 GCAGAGCTAATCAAAGTGTGTTGAA 60.278 40.000 0.00 0.00 40.76 2.69
4513 9004 4.214119 GCAGAGCTAATCAAAGTGTGTTGA 59.786 41.667 0.00 0.00 41.59 3.18
4514 9005 4.470462 GCAGAGCTAATCAAAGTGTGTTG 58.530 43.478 0.00 0.00 0.00 3.33
4515 9006 3.187227 CGCAGAGCTAATCAAAGTGTGTT 59.813 43.478 0.00 0.00 0.00 3.32
4516 9007 2.738846 CGCAGAGCTAATCAAAGTGTGT 59.261 45.455 0.00 0.00 0.00 3.72
4518 9009 2.350522 CCGCAGAGCTAATCAAAGTGT 58.649 47.619 0.00 0.00 0.00 3.55
4519 9010 1.063174 GCCGCAGAGCTAATCAAAGTG 59.937 52.381 0.00 0.00 0.00 3.16
4522 9013 1.066215 TCAGCCGCAGAGCTAATCAAA 60.066 47.619 0.00 0.00 42.61 2.69
4524 9015 0.103755 CTCAGCCGCAGAGCTAATCA 59.896 55.000 0.00 0.00 42.61 2.57
4525 9016 0.599728 CCTCAGCCGCAGAGCTAATC 60.600 60.000 7.26 0.00 42.61 1.75
4527 9018 1.045350 ATCCTCAGCCGCAGAGCTAA 61.045 55.000 7.26 0.00 42.61 3.09
4528 9019 0.178990 TATCCTCAGCCGCAGAGCTA 60.179 55.000 7.26 0.00 42.61 3.32
4529 9020 0.831288 ATATCCTCAGCCGCAGAGCT 60.831 55.000 7.26 0.00 46.45 4.09
4531 9022 3.696548 TGTATATATCCTCAGCCGCAGAG 59.303 47.826 5.82 5.82 0.00 3.35
4532 9023 3.697166 TGTATATATCCTCAGCCGCAGA 58.303 45.455 0.00 0.00 0.00 4.26
4533 9024 4.662468 ATGTATATATCCTCAGCCGCAG 57.338 45.455 0.00 0.00 0.00 5.18
4534 9025 4.953579 TGTATGTATATATCCTCAGCCGCA 59.046 41.667 0.00 0.00 0.00 5.69
4561 9052 9.548631 ACTACCACTGCTTGTAGGAATATATAT 57.451 33.333 0.00 0.00 38.98 0.86
4563 9054 7.857404 ACTACCACTGCTTGTAGGAATATAT 57.143 36.000 0.00 0.00 38.98 0.86
4564 9055 7.670605 AACTACCACTGCTTGTAGGAATATA 57.329 36.000 0.00 0.00 38.98 0.86
4565 9056 6.561519 AACTACCACTGCTTGTAGGAATAT 57.438 37.500 0.00 0.00 38.98 1.28
4567 9058 4.910458 AACTACCACTGCTTGTAGGAAT 57.090 40.909 0.00 0.00 38.98 3.01
4568 9059 4.020839 GGTAACTACCACTGCTTGTAGGAA 60.021 45.833 0.80 0.00 45.73 3.36
4569 9060 3.512724 GGTAACTACCACTGCTTGTAGGA 59.487 47.826 0.80 0.00 45.73 2.94
4582 9073 1.435577 CGCAAGTGGTGGTAACTACC 58.564 55.000 0.00 0.00 46.62 3.18
4598 9089 9.923786 GATATTACATACAACATACAAAACGCA 57.076 29.630 0.00 0.00 0.00 5.24
4608 9099 9.042008 GGTTTCGACAGATATTACATACAACAT 57.958 33.333 0.00 0.00 0.00 2.71
4609 9100 7.221259 CGGTTTCGACAGATATTACATACAACA 59.779 37.037 0.00 0.00 39.00 3.33
4610 9101 7.433131 TCGGTTTCGACAGATATTACATACAAC 59.567 37.037 0.00 0.00 40.88 3.32
4611 9102 7.482474 TCGGTTTCGACAGATATTACATACAA 58.518 34.615 0.00 0.00 40.88 2.41
4613 9104 7.358066 TCTCGGTTTCGACAGATATTACATAC 58.642 38.462 0.00 0.00 40.88 2.39
4614 9105 7.228108 ACTCTCGGTTTCGACAGATATTACATA 59.772 37.037 0.00 0.00 40.88 2.29
4615 9106 6.039493 ACTCTCGGTTTCGACAGATATTACAT 59.961 38.462 0.00 0.00 40.88 2.29
4616 9107 5.356190 ACTCTCGGTTTCGACAGATATTACA 59.644 40.000 0.00 0.00 40.88 2.41
4617 9108 5.819059 ACTCTCGGTTTCGACAGATATTAC 58.181 41.667 0.00 0.00 40.88 1.89
4618 9109 7.228108 ACATACTCTCGGTTTCGACAGATATTA 59.772 37.037 0.00 0.00 40.88 0.98
4620 9111 5.531659 ACATACTCTCGGTTTCGACAGATAT 59.468 40.000 0.00 0.00 40.88 1.63
4621 9112 4.880120 ACATACTCTCGGTTTCGACAGATA 59.120 41.667 0.00 0.00 40.88 1.98
4622 9113 3.695060 ACATACTCTCGGTTTCGACAGAT 59.305 43.478 0.00 0.00 40.88 2.90
4623 9114 3.079578 ACATACTCTCGGTTTCGACAGA 58.920 45.455 0.00 0.00 40.88 3.41
4624 9115 3.489180 ACATACTCTCGGTTTCGACAG 57.511 47.619 0.00 0.00 40.88 3.51
4625 9116 4.346734 GTACATACTCTCGGTTTCGACA 57.653 45.455 0.00 0.00 40.88 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.