Multiple sequence alignment - TraesCS6A01G377400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G377400 chr6A 100.000 4924 0 0 1 4924 598639269 598634346 0.000000e+00 9094.0
1 TraesCS6A01G377400 chr6D 90.232 4187 244 66 797 4919 452739962 452735877 0.000000e+00 5313.0
2 TraesCS6A01G377400 chr6B 92.338 2754 173 24 1491 4226 687556863 687554130 0.000000e+00 3882.0
3 TraesCS6A01G377400 chr6B 91.501 706 34 9 801 1498 687557573 687556886 0.000000e+00 948.0
4 TraesCS6A01G377400 chr6B 79.793 579 60 31 4378 4914 687554053 687553490 7.790000e-98 368.0
5 TraesCS6A01G377400 chr6B 93.617 188 7 4 534 718 687558194 687558009 4.860000e-70 276.0
6 TraesCS6A01G377400 chr6B 81.034 116 17 5 289 403 451279 451390 2.440000e-13 87.9
7 TraesCS6A01G377400 chr5B 84.540 511 66 13 1 504 465614151 465614655 1.230000e-135 494.0
8 TraesCS6A01G377400 chr7A 79.762 504 87 7 2 502 12763766 12763275 7.840000e-93 351.0
9 TraesCS6A01G377400 chr7A 78.723 282 59 1 132 412 59435644 59435363 2.340000e-43 187.0
10 TraesCS6A01G377400 chr1A 77.099 524 103 12 1 517 256498478 256498991 2.240000e-73 287.0
11 TraesCS6A01G377400 chr1A 76.513 413 87 9 1 409 535688492 535688086 2.980000e-52 217.0
12 TraesCS6A01G377400 chr1B 77.011 522 96 16 1 516 396681515 396681012 1.350000e-70 278.0
13 TraesCS6A01G377400 chr7D 76.417 441 78 19 67 501 458729442 458729862 1.070000e-51 215.0
14 TraesCS6A01G377400 chr3A 81.955 266 33 10 256 519 715202144 715202396 1.390000e-50 211.0
15 TraesCS6A01G377400 chr7B 75.545 413 92 8 1 409 154793869 154793462 1.400000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G377400 chr6A 598634346 598639269 4923 True 9094.0 9094 100.00000 1 4924 1 chr6A.!!$R1 4923
1 TraesCS6A01G377400 chr6D 452735877 452739962 4085 True 5313.0 5313 90.23200 797 4919 1 chr6D.!!$R1 4122
2 TraesCS6A01G377400 chr6B 687553490 687558194 4704 True 1368.5 3882 89.31225 534 4914 4 chr6B.!!$R1 4380
3 TraesCS6A01G377400 chr5B 465614151 465614655 504 False 494.0 494 84.54000 1 504 1 chr5B.!!$F1 503
4 TraesCS6A01G377400 chr1A 256498478 256498991 513 False 287.0 287 77.09900 1 517 1 chr1A.!!$F1 516
5 TraesCS6A01G377400 chr1B 396681012 396681515 503 True 278.0 278 77.01100 1 516 1 chr1B.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 325 0.623723 AAGGTGGTTGCACGGGATAT 59.376 50.0 0.00 0.0 0.00 1.63 F
1572 1998 0.325577 TCTCCCTGACAGCATGCCTA 60.326 55.0 15.66 0.0 42.53 3.93 F
2077 2504 0.389391 ACTGGACACGAGACACTTGG 59.611 55.0 0.00 0.0 0.00 3.61 F
3630 4059 0.731855 GTACGAACCCGACTCTGTGC 60.732 60.0 0.00 0.0 39.50 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 2007 0.681175 ACCAGGCCACATTTTTCTGC 59.319 50.0 5.01 0.0 0.00 4.26 R
2516 2944 0.030101 TTGCGGCGTTCAAGGAAAAG 59.970 50.0 9.37 0.0 0.00 2.27 R
3674 4103 0.244721 CCAGCACGTCTGACTCATCA 59.755 55.0 14.19 0.0 45.72 3.07 R
4675 5175 0.036952 AAGGAGTGCGTGGATCACAG 60.037 55.0 0.00 0.0 36.93 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 7.551262 AGACCATTCATGTAGCATTTAACGTAA 59.449 33.333 0.00 0.00 0.00 3.18
46 48 7.469260 ACCATTCATGTAGCATTTAACGTAAC 58.531 34.615 0.00 0.00 0.00 2.50
49 51 8.604035 CATTCATGTAGCATTTAACGTAACTCT 58.396 33.333 0.00 0.00 0.00 3.24
73 75 5.523552 TGCTCATCTCGGTTACACATTTATG 59.476 40.000 0.00 0.00 0.00 1.90
99 101 4.402474 GGAATTGGTTAACTGGGATTGAGG 59.598 45.833 5.42 0.00 0.00 3.86
104 106 4.043561 TGGTTAACTGGGATTGAGGCTAAA 59.956 41.667 5.42 0.00 0.00 1.85
136 138 6.710597 ACATATTCGTGTAGGAGTATGTGT 57.289 37.500 16.65 3.61 43.73 3.72
154 156 8.056400 AGTATGTGTATTACTTTGGGCCATTTA 58.944 33.333 7.26 0.00 0.00 1.40
209 211 8.728088 GACAAATCGTCACAAATTTTCTACAT 57.272 30.769 0.00 0.00 44.69 2.29
238 240 2.268920 GGCGTCAGCTTGGATCCA 59.731 61.111 11.44 11.44 44.37 3.41
242 244 1.473257 GCGTCAGCTTGGATCCATACA 60.473 52.381 17.06 0.00 41.01 2.29
287 290 5.337169 GGATCACAGAGAGCTTATGGATACC 60.337 48.000 0.00 0.00 31.91 2.73
321 325 0.623723 AAGGTGGTTGCACGGGATAT 59.376 50.000 0.00 0.00 0.00 1.63
330 334 4.382291 GTTGCACGGGATATATACAACCA 58.618 43.478 0.00 0.00 31.94 3.67
341 345 7.458397 GGATATATACAACCAGTTTGGATGGA 58.542 38.462 9.70 1.85 43.70 3.41
502 510 3.645268 GAGATGCAAAGCCCGGGGT 62.645 63.158 22.45 22.45 0.00 4.95
553 561 1.420430 TCCGTGTCAGGGTCTTTCTT 58.580 50.000 11.26 0.00 0.00 2.52
582 590 2.028020 CGTCAGCCCCTTATTAGGATCC 60.028 54.545 2.48 2.48 45.05 3.36
586 594 5.129650 GTCAGCCCCTTATTAGGATCCTATC 59.870 48.000 22.30 4.90 45.05 2.08
592 600 8.782927 GCCCCTTATTAGGATCCTATCTTTAAT 58.217 37.037 22.30 15.14 45.05 1.40
736 747 5.261209 TCCAATTGGAGTGTTTTTGACTG 57.739 39.130 23.63 0.00 39.78 3.51
737 748 4.952957 TCCAATTGGAGTGTTTTTGACTGA 59.047 37.500 23.63 0.00 39.78 3.41
738 749 5.043248 CCAATTGGAGTGTTTTTGACTGAC 58.957 41.667 20.50 0.00 37.39 3.51
739 750 5.163519 CCAATTGGAGTGTTTTTGACTGACT 60.164 40.000 20.50 0.00 37.39 3.41
740 751 5.757850 ATTGGAGTGTTTTTGACTGACTC 57.242 39.130 0.00 0.00 32.99 3.36
741 752 4.487714 TGGAGTGTTTTTGACTGACTCT 57.512 40.909 0.00 0.00 33.81 3.24
742 753 4.843728 TGGAGTGTTTTTGACTGACTCTT 58.156 39.130 0.00 0.00 33.81 2.85
743 754 5.253330 TGGAGTGTTTTTGACTGACTCTTT 58.747 37.500 0.00 0.00 33.81 2.52
746 757 5.942872 AGTGTTTTTGACTGACTCTTTGTG 58.057 37.500 0.00 0.00 0.00 3.33
749 1129 5.048083 TGTTTTTGACTGACTCTTTGTGCTT 60.048 36.000 0.00 0.00 0.00 3.91
754 1134 1.534595 CTGACTCTTTGTGCTTGCTCC 59.465 52.381 0.00 0.00 0.00 4.70
760 1140 0.685785 TTTGTGCTTGCTCCCCAACA 60.686 50.000 0.00 0.00 0.00 3.33
768 1148 2.935481 CTCCCCAACAGGCCTCCA 60.935 66.667 0.00 0.00 0.00 3.86
783 1163 3.764466 CCACGAGCTCGGCCTTCT 61.764 66.667 36.93 14.88 44.95 2.85
785 1165 1.807573 CACGAGCTCGGCCTTCTTC 60.808 63.158 36.93 0.00 44.95 2.87
786 1166 2.202810 CGAGCTCGGCCTTCTTCC 60.203 66.667 28.40 0.00 35.37 3.46
787 1167 2.716017 CGAGCTCGGCCTTCTTCCT 61.716 63.158 28.40 0.00 35.37 3.36
788 1168 1.599576 GAGCTCGGCCTTCTTCCTT 59.400 57.895 0.00 0.00 0.00 3.36
789 1169 0.742635 GAGCTCGGCCTTCTTCCTTG 60.743 60.000 0.00 0.00 0.00 3.61
790 1170 2.402572 GCTCGGCCTTCTTCCTTGC 61.403 63.158 0.00 0.00 0.00 4.01
791 1171 1.746991 CTCGGCCTTCTTCCTTGCC 60.747 63.158 0.00 0.00 40.54 4.52
793 1173 2.034221 GGCCTTCTTCCTTGCCGT 59.966 61.111 0.00 0.00 33.59 5.68
794 1174 2.335712 GGCCTTCTTCCTTGCCGTG 61.336 63.158 0.00 0.00 33.59 4.94
795 1175 1.600916 GCCTTCTTCCTTGCCGTGT 60.601 57.895 0.00 0.00 0.00 4.49
796 1176 1.172812 GCCTTCTTCCTTGCCGTGTT 61.173 55.000 0.00 0.00 0.00 3.32
797 1177 1.318576 CCTTCTTCCTTGCCGTGTTT 58.681 50.000 0.00 0.00 0.00 2.83
798 1178 1.001378 CCTTCTTCCTTGCCGTGTTTG 60.001 52.381 0.00 0.00 0.00 2.93
799 1179 1.676006 CTTCTTCCTTGCCGTGTTTGT 59.324 47.619 0.00 0.00 0.00 2.83
800 1180 1.305201 TCTTCCTTGCCGTGTTTGTC 58.695 50.000 0.00 0.00 0.00 3.18
801 1181 1.134220 TCTTCCTTGCCGTGTTTGTCT 60.134 47.619 0.00 0.00 0.00 3.41
824 1204 3.226429 GAGCGAGTGACACCAGCCA 62.226 63.158 16.33 0.00 0.00 4.75
843 1223 2.202570 CCCACGTCGCGACCTAAG 60.203 66.667 31.84 20.48 0.00 2.18
847 1227 3.823330 CGTCGCGACCTAAGCCCT 61.823 66.667 31.84 0.00 0.00 5.19
853 1233 4.222847 GACCTAAGCCCTCGCCGG 62.223 72.222 0.00 0.00 34.57 6.13
871 1251 2.679996 AAATCCCCCACTTGCGCC 60.680 61.111 4.18 0.00 0.00 6.53
910 1290 2.897350 CAATCGCTCCGCCCTTCC 60.897 66.667 0.00 0.00 0.00 3.46
990 1371 2.439701 CTCCTCCACCGGCGTCTA 60.440 66.667 6.01 0.00 0.00 2.59
1060 1441 3.330720 CGCAGTTTCCCCTCCCCT 61.331 66.667 0.00 0.00 0.00 4.79
1063 1444 1.229984 CAGTTTCCCCTCCCCTCCT 60.230 63.158 0.00 0.00 0.00 3.69
1065 1446 2.040606 TTTCCCCTCCCCTCCTCG 59.959 66.667 0.00 0.00 0.00 4.63
1066 1447 2.563972 TTTCCCCTCCCCTCCTCGA 61.564 63.158 0.00 0.00 0.00 4.04
1108 1489 4.752514 GGCTACCCGTCTACATGC 57.247 61.111 0.00 0.00 0.00 4.06
1109 1490 1.299926 GGCTACCCGTCTACATGCG 60.300 63.158 0.00 0.00 0.00 4.73
1110 1491 1.949631 GCTACCCGTCTACATGCGC 60.950 63.158 0.00 0.00 0.00 6.09
1111 1492 1.435925 CTACCCGTCTACATGCGCA 59.564 57.895 14.96 14.96 0.00 6.09
1112 1493 0.595053 CTACCCGTCTACATGCGCAG 60.595 60.000 18.32 10.85 0.00 5.18
1149 1530 2.334838 CAGTTTCGTCTAGGGTTTCGG 58.665 52.381 0.00 0.00 0.00 4.30
1348 1734 3.695606 GCACCCCTGTCGCAGAGA 61.696 66.667 8.20 0.00 36.95 3.10
1365 1751 1.133407 GAGAGGCTCAACGTGTAGGAG 59.867 57.143 18.26 0.00 0.00 3.69
1370 1756 1.983972 CTCAACGTGTAGGAGCTCAC 58.016 55.000 17.19 6.65 0.00 3.51
1383 1771 3.846588 AGGAGCTCACCCTTCTTAATTGA 59.153 43.478 17.19 0.00 0.00 2.57
1384 1772 4.476479 AGGAGCTCACCCTTCTTAATTGAT 59.524 41.667 17.19 0.00 0.00 2.57
1435 1823 7.124147 CCCCTAATTGTTATCACTGGTGAATTT 59.876 37.037 7.53 0.00 43.58 1.82
1453 1845 8.954350 GGTGAATTTTGAGATGGATCCTATATG 58.046 37.037 14.23 0.00 0.00 1.78
1454 1846 8.457261 GTGAATTTTGAGATGGATCCTATATGC 58.543 37.037 14.23 0.00 0.00 3.14
1455 1847 8.388589 TGAATTTTGAGATGGATCCTATATGCT 58.611 33.333 14.23 0.97 0.00 3.79
1456 1848 9.240734 GAATTTTGAGATGGATCCTATATGCTT 57.759 33.333 14.23 0.00 0.00 3.91
1458 1850 9.678260 ATTTTGAGATGGATCCTATATGCTTAC 57.322 33.333 14.23 0.00 0.00 2.34
1562 1984 7.687941 TTTCTGAATTTATGTTCTCCCTGAC 57.312 36.000 0.00 0.00 0.00 3.51
1563 1985 6.373005 TCTGAATTTATGTTCTCCCTGACA 57.627 37.500 0.00 0.00 0.00 3.58
1568 1994 2.414994 ATGTTCTCCCTGACAGCATG 57.585 50.000 0.00 0.00 46.00 4.06
1570 1996 1.028868 GTTCTCCCTGACAGCATGCC 61.029 60.000 15.66 0.00 42.53 4.40
1572 1998 0.325577 TCTCCCTGACAGCATGCCTA 60.326 55.000 15.66 0.00 42.53 3.93
1581 2007 1.315690 CAGCATGCCTAATGGACAGG 58.684 55.000 15.66 0.00 36.71 4.00
1595 2021 1.337167 GGACAGGCAGAAAAATGTGGC 60.337 52.381 0.00 0.00 39.48 5.01
1598 2024 3.520187 GGCAGAAAAATGTGGCCTG 57.480 52.632 3.32 0.00 41.39 4.85
1600 2026 0.681175 GCAGAAAAATGTGGCCTGGT 59.319 50.000 3.32 0.00 0.00 4.00
1648 2074 6.213525 AGGTACTAAGAGGGGATTTGAATCT 58.786 40.000 3.94 0.00 36.02 2.40
1697 2123 1.266989 GTAGTGGTGTTTGCTTCTGGC 59.733 52.381 0.00 0.00 42.22 4.85
1761 2187 2.673043 GCCAATCATGTTGTGCTCAAGG 60.673 50.000 0.50 0.00 33.97 3.61
1965 2392 1.017387 CGTCCCTTTAGATGCCTTGC 58.983 55.000 0.00 0.00 0.00 4.01
1969 2396 1.747355 CCCTTTAGATGCCTTGCACTG 59.253 52.381 0.00 0.00 43.04 3.66
2048 2475 4.753516 TTCCCGCTATCTGAAATCTGAA 57.246 40.909 0.00 0.00 0.00 3.02
2077 2504 0.389391 ACTGGACACGAGACACTTGG 59.611 55.000 0.00 0.00 0.00 3.61
2191 2618 1.649664 ATGTGCATCTCTTCTGCGTC 58.350 50.000 0.00 0.00 42.62 5.19
2192 2619 0.733909 TGTGCATCTCTTCTGCGTCG 60.734 55.000 0.00 0.00 42.62 5.12
2270 2697 2.029623 GTATGGCGTTCTCCTCCACTA 58.970 52.381 0.00 0.00 31.94 2.74
2273 2700 1.480954 TGGCGTTCTCCTCCACTAATC 59.519 52.381 0.00 0.00 0.00 1.75
2276 2703 3.596214 GCGTTCTCCTCCACTAATCAAA 58.404 45.455 0.00 0.00 0.00 2.69
2451 2879 6.604795 AGGGATGAAAGTGACTGGAATATTTG 59.395 38.462 0.00 0.00 0.00 2.32
2481 2909 5.069648 TCCCATATGAGCTACTTCTGAAGTG 59.930 44.000 28.46 19.70 42.84 3.16
2516 2944 3.988379 TCAGTTGTCAAATGCCTTGTC 57.012 42.857 8.14 0.00 36.34 3.18
2529 2957 2.357637 TGCCTTGTCTTTTCCTTGAACG 59.642 45.455 0.00 0.00 0.00 3.95
2562 2990 6.872628 ACCTTTATGCATGTGTCTATGATG 57.127 37.500 10.16 0.00 0.00 3.07
2629 3057 7.876896 GTTTGGTCAAAACTTAAAAGTGTCA 57.123 32.000 0.00 0.00 44.10 3.58
2635 3063 8.592155 GGTCAAAACTTAAAAGTGTCATTGTTC 58.408 33.333 0.00 0.84 39.66 3.18
2643 3071 4.419522 AAGTGTCATTGTTCGTAATGCC 57.580 40.909 0.00 0.00 37.83 4.40
2657 3085 4.279671 TCGTAATGCCATTGTTTGTTTCCT 59.720 37.500 0.00 0.00 0.00 3.36
2665 3093 6.375736 TGCCATTGTTTGTTTCCTCGAATATA 59.624 34.615 0.00 0.00 0.00 0.86
2709 3137 2.498885 TCTGTCTGACATGCTGCATACT 59.501 45.455 15.78 3.09 0.00 2.12
2727 3156 3.728385 ACTTTCCATCTTAAGCTGCCT 57.272 42.857 0.59 0.00 0.00 4.75
2736 3165 4.796110 TCTTAAGCTGCCTATTTCCCAT 57.204 40.909 0.00 0.00 0.00 4.00
2813 3242 1.612726 CCAGGAGTTTCAAGCAGAGGG 60.613 57.143 0.00 0.00 0.00 4.30
2817 3246 2.147150 GAGTTTCAAGCAGAGGGACAC 58.853 52.381 0.00 0.00 0.00 3.67
3080 3509 3.701040 CCTCCAAAAATGGACCACCTATG 59.299 47.826 0.00 0.00 37.04 2.23
3096 3525 4.516698 CACCTATGTCTTTGACAAGCAACT 59.483 41.667 4.46 0.00 45.96 3.16
3101 3530 1.330521 TCTTTGACAAGCAACTCACGC 59.669 47.619 0.00 0.00 35.91 5.34
3164 3593 9.397280 GAGATTGTAGAGCTATTTAAAAGGGTT 57.603 33.333 0.00 0.00 0.00 4.11
3227 3656 2.299326 AGCCTGAACCTGCAAAATCT 57.701 45.000 0.00 0.00 0.00 2.40
3248 3677 1.002544 CAGGGTGAGAAGGGAAGTGTC 59.997 57.143 0.00 0.00 0.00 3.67
3274 3703 3.708631 TCCCTTCTTAATCTGCTCAGGAG 59.291 47.826 0.00 0.00 0.00 3.69
3317 3746 3.257393 GAAGAGCAGCGATGAGAAAGAA 58.743 45.455 4.02 0.00 0.00 2.52
3397 3826 0.806884 TTTGGCACGAAGAACGACGT 60.807 50.000 0.00 0.00 45.77 4.34
3485 3914 1.427753 CCTGTCCCTGGGGTTAAGTTT 59.572 52.381 14.00 0.00 36.47 2.66
3506 3935 4.365514 TCAGCTTGTTACCAATCCAGAA 57.634 40.909 0.00 0.00 0.00 3.02
3630 4059 0.731855 GTACGAACCCGACTCTGTGC 60.732 60.000 0.00 0.00 39.50 4.57
3644 4073 1.273606 TCTGTGCTAGCACCAGAAGAC 59.726 52.381 37.90 16.69 45.63 3.01
3656 4085 2.026822 ACCAGAAGACGCATCTTTGGAT 60.027 45.455 22.10 9.92 45.60 3.41
3674 4103 6.713762 TTGGATGACTTTGTTGTTTCAGAT 57.286 33.333 0.00 0.00 0.00 2.90
3680 4109 6.962686 TGACTTTGTTGTTTCAGATGATGAG 58.037 36.000 0.00 0.00 39.68 2.90
3696 4125 0.244721 TGAGTCAGACGTGCTGGATG 59.755 55.000 12.89 0.00 44.98 3.51
3707 4136 1.153086 GCTGGATGCCGATGAACCT 60.153 57.895 0.00 0.00 35.15 3.50
3725 4154 4.408182 ACCTGAAGATTATCTGGAACCG 57.592 45.455 4.37 0.00 39.95 4.44
3736 4165 1.628340 TCTGGAACCGTTGGATGATGT 59.372 47.619 0.00 0.00 0.00 3.06
3737 4166 2.009774 CTGGAACCGTTGGATGATGTC 58.990 52.381 0.00 0.00 0.00 3.06
3740 4169 1.659098 GAACCGTTGGATGATGTCGAC 59.341 52.381 9.11 9.11 0.00 4.20
3744 4173 1.731098 CGTTGGATGATGTCGACGACA 60.731 52.381 30.90 30.90 46.90 4.35
3757 4186 2.033424 TCGACGACATTCCAGATAGCAG 59.967 50.000 0.00 0.00 0.00 4.24
3759 4188 1.135046 CGACATTCCAGATAGCAGCG 58.865 55.000 0.00 0.00 0.00 5.18
3766 4195 1.370437 CAGATAGCAGCGCATCCCT 59.630 57.895 11.47 1.93 0.00 4.20
3839 4268 0.539669 TCAAGGTCACGGAGCTGAGA 60.540 55.000 0.00 5.72 39.62 3.27
3851 4280 1.519013 GCTGAGAGAGCTGGCGAAG 60.519 63.158 0.00 0.00 45.21 3.79
3888 4317 3.491792 GGGCTACTCGAAGATGAAGAAGG 60.492 52.174 0.00 0.00 33.89 3.46
3935 4364 3.785859 TCCTGATCCGCTGGTGGC 61.786 66.667 0.00 0.00 36.96 5.01
4034 4466 0.969149 CCAAGACCAGGCCCTTTTTC 59.031 55.000 0.00 0.00 0.00 2.29
4086 4519 1.632046 TTTTCTCCGTTCATCGCCGC 61.632 55.000 0.00 0.00 38.35 6.53
4087 4520 4.508128 TCTCCGTTCATCGCCGCC 62.508 66.667 0.00 0.00 38.35 6.13
4114 4554 2.899900 TCTGTTGCTGTCATGTCCTAGT 59.100 45.455 0.00 0.00 0.00 2.57
4118 4558 4.202357 TGTTGCTGTCATGTCCTAGTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
4132 4572 7.822822 TGTCCTAGTTTCTTTAGTTGATTAGCC 59.177 37.037 0.00 0.00 0.00 3.93
4145 4585 2.693591 TGATTAGCCGGACTCTGTTAGG 59.306 50.000 5.05 0.00 0.00 2.69
4156 4596 5.522824 CGGACTCTGTTAGGGTTAAATAAGC 59.477 44.000 0.00 0.00 0.00 3.09
4194 4638 1.374125 GGGGCATTTGTTTCCGTGC 60.374 57.895 0.00 0.00 36.88 5.34
4196 4640 0.667184 GGGCATTTGTTTCCGTGCTG 60.667 55.000 0.00 0.00 37.70 4.41
4200 4644 2.920647 GCATTTGTTTCCGTGCTGTACC 60.921 50.000 0.00 0.00 34.85 3.34
4205 4649 3.583276 TTCCGTGCTGTACCGCTGG 62.583 63.158 10.75 11.82 0.00 4.85
4221 4667 0.537143 CTGGTGTTGTAGGCAAGGCA 60.537 55.000 0.00 0.00 34.94 4.75
4252 4698 0.179108 CCTCCTCGATTCGGTTGGTC 60.179 60.000 6.18 0.00 0.00 4.02
4273 4723 1.612469 CTCGTCAGTGAGCGTGCAAG 61.612 60.000 12.62 0.00 0.00 4.01
4311 4770 6.346598 CGTTGATACTGTTCTGATTTCGTTGT 60.347 38.462 0.00 0.00 0.00 3.32
4312 4771 6.466308 TGATACTGTTCTGATTTCGTTGTG 57.534 37.500 0.00 0.00 0.00 3.33
4313 4772 3.609103 ACTGTTCTGATTTCGTTGTGC 57.391 42.857 0.00 0.00 0.00 4.57
4315 4774 3.248602 ACTGTTCTGATTTCGTTGTGCTC 59.751 43.478 0.00 0.00 0.00 4.26
4316 4775 2.220824 TGTTCTGATTTCGTTGTGCTCG 59.779 45.455 0.00 0.00 0.00 5.03
4317 4776 2.148916 TCTGATTTCGTTGTGCTCGT 57.851 45.000 0.00 0.00 0.00 4.18
4318 4777 3.291809 TCTGATTTCGTTGTGCTCGTA 57.708 42.857 0.00 0.00 0.00 3.43
4319 4778 3.845178 TCTGATTTCGTTGTGCTCGTAT 58.155 40.909 0.00 0.00 0.00 3.06
4321 4780 3.580731 TGATTTCGTTGTGCTCGTATCA 58.419 40.909 0.00 0.00 32.85 2.15
4322 4781 3.612423 TGATTTCGTTGTGCTCGTATCAG 59.388 43.478 0.00 0.00 32.22 2.90
4323 4782 2.717580 TTCGTTGTGCTCGTATCAGT 57.282 45.000 0.00 0.00 0.00 3.41
4324 4783 2.257974 TCGTTGTGCTCGTATCAGTC 57.742 50.000 0.00 0.00 0.00 3.51
4326 4785 2.228103 TCGTTGTGCTCGTATCAGTCTT 59.772 45.455 0.00 0.00 0.00 3.01
4328 4787 2.544480 TGTGCTCGTATCAGTCTTCG 57.456 50.000 0.00 0.00 0.00 3.79
4330 4789 1.132643 GTGCTCGTATCAGTCTTCGGT 59.867 52.381 0.00 0.00 0.00 4.69
4331 4790 1.132453 TGCTCGTATCAGTCTTCGGTG 59.868 52.381 0.00 0.00 0.00 4.94
4332 4791 1.828832 CTCGTATCAGTCTTCGGTGC 58.171 55.000 0.00 0.00 0.00 5.01
4334 4793 1.749063 TCGTATCAGTCTTCGGTGCAT 59.251 47.619 0.00 0.00 0.00 3.96
4335 4794 2.120232 CGTATCAGTCTTCGGTGCATC 58.880 52.381 0.00 0.00 0.00 3.91
4336 4795 2.223595 CGTATCAGTCTTCGGTGCATCT 60.224 50.000 0.00 0.00 0.00 2.90
4337 4796 3.003378 CGTATCAGTCTTCGGTGCATCTA 59.997 47.826 0.00 0.00 0.00 1.98
4338 4797 4.497507 CGTATCAGTCTTCGGTGCATCTAA 60.498 45.833 0.00 0.00 0.00 2.10
4339 4798 3.232213 TCAGTCTTCGGTGCATCTAAC 57.768 47.619 0.00 0.00 0.00 2.34
4340 4799 2.560981 TCAGTCTTCGGTGCATCTAACA 59.439 45.455 0.00 0.00 0.00 2.41
4341 4800 2.668457 CAGTCTTCGGTGCATCTAACAC 59.332 50.000 0.00 0.00 37.31 3.32
4342 4801 1.654105 GTCTTCGGTGCATCTAACACG 59.346 52.381 0.00 0.00 38.98 4.49
4343 4802 0.999406 CTTCGGTGCATCTAACACGG 59.001 55.000 0.00 0.00 38.98 4.94
4344 4803 0.319083 TTCGGTGCATCTAACACGGT 59.681 50.000 0.00 0.00 38.98 4.83
4345 4804 0.108992 TCGGTGCATCTAACACGGTC 60.109 55.000 0.00 0.00 38.98 4.79
4346 4805 0.108804 CGGTGCATCTAACACGGTCT 60.109 55.000 0.00 0.00 38.98 3.85
4347 4806 1.359848 GGTGCATCTAACACGGTCTG 58.640 55.000 0.00 0.00 38.98 3.51
4348 4807 1.359848 GTGCATCTAACACGGTCTGG 58.640 55.000 0.00 0.00 0.00 3.86
4349 4808 1.067142 GTGCATCTAACACGGTCTGGA 60.067 52.381 0.00 0.00 0.00 3.86
4350 4809 1.831106 TGCATCTAACACGGTCTGGAT 59.169 47.619 0.00 0.00 0.00 3.41
4351 4810 2.205074 GCATCTAACACGGTCTGGATG 58.795 52.381 8.10 8.10 35.21 3.51
4352 4811 2.205074 CATCTAACACGGTCTGGATGC 58.795 52.381 0.00 0.00 0.00 3.91
4353 4812 1.262417 TCTAACACGGTCTGGATGCA 58.738 50.000 0.00 0.00 0.00 3.96
4354 4813 1.831106 TCTAACACGGTCTGGATGCAT 59.169 47.619 0.00 0.00 0.00 3.96
4355 4814 1.935873 CTAACACGGTCTGGATGCATG 59.064 52.381 2.46 0.00 0.00 4.06
4356 4815 1.308069 AACACGGTCTGGATGCATGC 61.308 55.000 11.82 11.82 0.00 4.06
4357 4816 1.450848 CACGGTCTGGATGCATGCT 60.451 57.895 20.33 4.11 0.00 3.79
4358 4817 1.450848 ACGGTCTGGATGCATGCTG 60.451 57.895 20.33 18.38 0.00 4.41
4359 4818 2.831366 CGGTCTGGATGCATGCTGC 61.831 63.158 20.33 13.70 45.29 5.25
4360 4819 2.487532 GGTCTGGATGCATGCTGCC 61.488 63.158 20.33 19.38 44.23 4.85
4361 4820 1.751544 GTCTGGATGCATGCTGCCA 60.752 57.895 24.16 24.16 44.23 4.92
4362 4821 1.107538 GTCTGGATGCATGCTGCCAT 61.108 55.000 25.34 9.87 44.23 4.40
4363 4822 0.822121 TCTGGATGCATGCTGCCATC 60.822 55.000 25.34 16.96 44.23 3.51
4415 4877 3.751698 GGATATGAAAAGGATACCGGCAC 59.248 47.826 0.00 0.00 37.17 5.01
4417 4879 2.871096 TGAAAAGGATACCGGCACTT 57.129 45.000 0.00 0.00 37.17 3.16
4422 4884 0.469917 AGGATACCGGCACTTCATGG 59.530 55.000 0.00 0.00 37.17 3.66
4423 4885 0.468226 GGATACCGGCACTTCATGGA 59.532 55.000 0.00 0.00 0.00 3.41
4424 4886 1.072331 GGATACCGGCACTTCATGGAT 59.928 52.381 0.00 0.00 0.00 3.41
4432 4894 3.554934 GGCACTTCATGGATCATGGTAA 58.445 45.455 7.88 0.00 41.66 2.85
4442 4904 4.401022 TGGATCATGGTAATTCCTGATGC 58.599 43.478 0.00 13.68 39.73 3.91
4472 4936 3.567164 CCTTTCTTTTTCTCTGCAGCAGA 59.433 43.478 23.98 23.98 38.25 4.26
4557 5040 4.333633 CTTTCCTCGTGATGAAGAAAGC 57.666 45.455 11.56 0.00 44.14 3.51
4560 5043 3.738982 TCCTCGTGATGAAGAAAGCAAA 58.261 40.909 0.00 0.00 0.00 3.68
4561 5044 3.748048 TCCTCGTGATGAAGAAAGCAAAG 59.252 43.478 0.00 0.00 0.00 2.77
4562 5045 3.486584 CTCGTGATGAAGAAAGCAAAGC 58.513 45.455 0.00 0.00 0.00 3.51
4565 5048 4.022935 TCGTGATGAAGAAAGCAAAGCAAT 60.023 37.500 0.00 0.00 0.00 3.56
4566 5049 4.089493 CGTGATGAAGAAAGCAAAGCAATG 59.911 41.667 0.00 0.00 0.00 2.82
4567 5050 4.387862 GTGATGAAGAAAGCAAAGCAATGG 59.612 41.667 0.00 0.00 0.00 3.16
4568 5051 4.281435 TGATGAAGAAAGCAAAGCAATGGA 59.719 37.500 0.00 0.00 0.00 3.41
4569 5052 4.247267 TGAAGAAAGCAAAGCAATGGAG 57.753 40.909 0.00 0.00 0.00 3.86
4570 5053 3.638160 TGAAGAAAGCAAAGCAATGGAGT 59.362 39.130 0.00 0.00 0.00 3.85
4572 5055 2.227388 AGAAAGCAAAGCAATGGAGTCG 59.773 45.455 0.00 0.00 0.00 4.18
4575 5058 1.741706 AGCAAAGCAATGGAGTCGATG 59.258 47.619 0.00 0.00 0.00 3.84
4576 5059 1.202222 GCAAAGCAATGGAGTCGATGG 60.202 52.381 0.00 0.00 0.00 3.51
4577 5060 1.098050 AAAGCAATGGAGTCGATGGC 58.902 50.000 6.39 6.39 0.00 4.40
4578 5061 0.749454 AAGCAATGGAGTCGATGGCC 60.749 55.000 10.64 0.00 0.00 5.36
4588 5071 2.279120 CGATGGCCTCGTCAGCTC 60.279 66.667 3.32 0.00 42.56 4.09
4589 5072 2.895680 GATGGCCTCGTCAGCTCA 59.104 61.111 3.32 0.00 0.00 4.26
4591 5074 1.954362 GATGGCCTCGTCAGCTCAGT 61.954 60.000 3.32 0.00 0.00 3.41
4592 5075 1.954362 ATGGCCTCGTCAGCTCAGTC 61.954 60.000 3.32 0.00 0.00 3.51
4593 5076 2.202544 GCCTCGTCAGCTCAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
4594 5077 2.202544 CCTCGTCAGCTCAGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
4595 5078 2.563427 CTCGTCAGCTCAGTCGCA 59.437 61.111 0.00 0.00 0.00 5.10
4597 5080 2.193865 CTCGTCAGCTCAGTCGCAGT 62.194 60.000 0.00 0.00 0.00 4.40
4631 5121 0.595095 CTTCTGTTCCTTGTGCTGGC 59.405 55.000 0.00 0.00 0.00 4.85
4632 5122 0.823356 TTCTGTTCCTTGTGCTGGCC 60.823 55.000 0.00 0.00 0.00 5.36
4658 5148 3.187842 CGCCAAGGTAAGGAAGTAAACAC 59.812 47.826 0.00 0.00 0.00 3.32
4659 5149 3.187842 GCCAAGGTAAGGAAGTAAACACG 59.812 47.826 0.00 0.00 0.00 4.49
4660 5150 3.187842 CCAAGGTAAGGAAGTAAACACGC 59.812 47.826 0.00 0.00 0.00 5.34
4661 5151 3.756933 AGGTAAGGAAGTAAACACGCA 57.243 42.857 0.00 0.00 0.00 5.24
4662 5152 4.281898 AGGTAAGGAAGTAAACACGCAT 57.718 40.909 0.00 0.00 0.00 4.73
4663 5153 5.410355 AGGTAAGGAAGTAAACACGCATA 57.590 39.130 0.00 0.00 0.00 3.14
4664 5154 5.416947 AGGTAAGGAAGTAAACACGCATAG 58.583 41.667 0.00 0.00 0.00 2.23
4687 5187 1.812922 CTCAGCCTGTGATCCACGC 60.813 63.158 0.00 0.00 37.14 5.34
4688 5188 2.046988 CAGCCTGTGATCCACGCA 60.047 61.111 0.00 0.00 37.14 5.24
4695 5197 0.320683 TGTGATCCACGCACTCCTTG 60.321 55.000 0.00 0.00 37.14 3.61
4704 5206 0.463295 CGCACTCCTTGATCCATGCT 60.463 55.000 0.00 0.00 0.00 3.79
4706 5208 1.676746 CACTCCTTGATCCATGCTGG 58.323 55.000 0.00 0.00 39.43 4.85
4712 5214 2.286872 CTTGATCCATGCTGGTGTCTC 58.713 52.381 0.00 0.00 39.03 3.36
4722 5224 1.233019 CTGGTGTCTCTGCTTTGGTG 58.767 55.000 0.00 0.00 0.00 4.17
4748 5252 4.570663 CCGTCGGATCTGGGCGAC 62.571 72.222 4.91 14.11 0.00 5.19
4766 5270 1.373435 CTGGACGGTTAGTTGGCCA 59.627 57.895 0.00 0.00 0.00 5.36
4797 5303 2.507992 CTGCTTCCTCGTCCTGCG 60.508 66.667 0.00 0.00 43.01 5.18
4835 5346 2.429058 CTGGCTGGCTGTGTCTGT 59.571 61.111 2.00 0.00 0.00 3.41
4837 5348 2.387476 CTGGCTGGCTGTGTCTGTGA 62.387 60.000 2.00 0.00 0.00 3.58
4840 5351 0.948141 GCTGGCTGTGTCTGTGACTC 60.948 60.000 0.00 0.00 33.15 3.36
4844 5357 1.336702 GGCTGTGTCTGTGACTCTCTG 60.337 57.143 0.00 0.00 33.15 3.35
4856 5369 1.137086 GACTCTCTGTGTGTGTGGTGT 59.863 52.381 0.00 0.00 0.00 4.16
4892 5405 0.385390 CTGCCCCATTTTGATACGGC 59.615 55.000 0.00 0.00 36.91 5.68
4919 5432 0.249489 GTGCATGGTACCCTCTAGCG 60.249 60.000 10.07 0.00 0.00 4.26
4920 5433 1.367840 GCATGGTACCCTCTAGCGG 59.632 63.158 10.07 0.00 0.00 5.52
4921 5434 1.367840 CATGGTACCCTCTAGCGGC 59.632 63.158 10.07 0.00 0.00 6.53
4922 5435 1.075525 ATGGTACCCTCTAGCGGCA 60.076 57.895 10.07 0.00 0.00 5.69
4923 5436 1.115930 ATGGTACCCTCTAGCGGCAG 61.116 60.000 10.07 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 5.880332 ACGTTAAATGCTACATGAATGGTCT 59.120 36.000 0.00 0.00 0.00 3.85
45 47 2.164624 GTGTAACCGAGATGAGCAGAGT 59.835 50.000 0.00 0.00 0.00 3.24
46 48 2.164422 TGTGTAACCGAGATGAGCAGAG 59.836 50.000 0.00 0.00 34.36 3.35
49 51 3.610040 AATGTGTAACCGAGATGAGCA 57.390 42.857 0.00 0.00 34.36 4.26
73 75 3.163616 TCCCAGTTAACCAATTCCCAC 57.836 47.619 0.88 0.00 0.00 4.61
99 101 3.363178 GAATATGTGCCGCAGTTTTAGC 58.637 45.455 0.00 0.00 0.00 3.09
104 106 0.726827 CACGAATATGTGCCGCAGTT 59.273 50.000 0.00 0.00 32.31 3.16
136 138 8.602472 ACAATTCTAAATGGCCCAAAGTAATA 57.398 30.769 0.00 0.00 0.00 0.98
154 156 4.529377 AGGCAACATCATTCCAACAATTCT 59.471 37.500 0.00 0.00 41.41 2.40
206 208 4.442706 CTGACGCCCTAAAGATAACATGT 58.557 43.478 0.00 0.00 0.00 3.21
209 211 2.500098 AGCTGACGCCCTAAAGATAACA 59.500 45.455 0.00 0.00 36.60 2.41
242 244 4.165950 TCCACATGGCTAAGTAATGACCAT 59.834 41.667 0.00 0.00 41.79 3.55
254 256 2.697229 CTCTCTGTGATCCACATGGCTA 59.303 50.000 0.00 0.00 43.71 3.93
271 273 2.610727 GCACCGGTATCCATAAGCTCTC 60.611 54.545 6.87 0.00 0.00 3.20
272 274 1.344763 GCACCGGTATCCATAAGCTCT 59.655 52.381 6.87 0.00 0.00 4.09
301 305 0.402504 TATCCCGTGCAACCACCTTT 59.597 50.000 0.00 0.00 38.79 3.11
302 306 0.623723 ATATCCCGTGCAACCACCTT 59.376 50.000 0.00 0.00 38.79 3.50
305 309 3.997762 TGTATATATCCCGTGCAACCAC 58.002 45.455 0.00 0.00 38.62 4.16
321 325 4.538490 ACCTCCATCCAAACTGGTTGTATA 59.462 41.667 4.52 0.00 39.03 1.47
376 380 2.014128 CCACAACCGGCGAAAATAGAT 58.986 47.619 9.30 0.00 0.00 1.98
418 422 9.457436 AACAAGGTCTCTAAAAGTCTTACAAAA 57.543 29.630 0.00 0.00 0.00 2.44
433 437 1.344763 CAGGTTCCGAACAAGGTCTCT 59.655 52.381 13.23 0.00 0.00 3.10
526 534 4.918588 AGACCCTGACACGGATTATTTTT 58.081 39.130 0.00 0.00 0.00 1.94
527 535 4.569719 AGACCCTGACACGGATTATTTT 57.430 40.909 0.00 0.00 0.00 1.82
528 536 4.569719 AAGACCCTGACACGGATTATTT 57.430 40.909 0.00 0.00 0.00 1.40
529 537 4.225267 AGAAAGACCCTGACACGGATTATT 59.775 41.667 0.00 0.00 0.00 1.40
530 538 3.775316 AGAAAGACCCTGACACGGATTAT 59.225 43.478 0.00 0.00 0.00 1.28
531 539 3.170717 AGAAAGACCCTGACACGGATTA 58.829 45.455 0.00 0.00 0.00 1.75
532 540 1.978580 AGAAAGACCCTGACACGGATT 59.021 47.619 0.00 0.00 0.00 3.01
553 561 3.395630 GGGGCTGACGTTCCCTAA 58.604 61.111 17.38 0.00 42.25 2.69
709 720 3.541242 AAACACTCCAATTGGATCCCA 57.459 42.857 27.20 5.10 44.46 4.37
712 723 5.922544 CAGTCAAAAACACTCCAATTGGATC 59.077 40.000 27.20 8.03 44.46 3.36
713 724 5.598005 TCAGTCAAAAACACTCCAATTGGAT 59.402 36.000 27.20 14.52 44.46 3.41
714 725 4.952957 TCAGTCAAAAACACTCCAATTGGA 59.047 37.500 25.53 25.53 43.08 3.53
716 727 5.894807 AGTCAGTCAAAAACACTCCAATTG 58.105 37.500 0.00 0.00 0.00 2.32
717 728 5.888161 AGAGTCAGTCAAAAACACTCCAATT 59.112 36.000 0.00 0.00 33.45 2.32
718 729 5.440610 AGAGTCAGTCAAAAACACTCCAAT 58.559 37.500 0.00 0.00 33.45 3.16
720 731 4.487714 AGAGTCAGTCAAAAACACTCCA 57.512 40.909 0.00 0.00 33.45 3.86
721 732 5.123979 ACAAAGAGTCAGTCAAAAACACTCC 59.876 40.000 0.00 0.00 33.45 3.85
722 733 6.024049 CACAAAGAGTCAGTCAAAAACACTC 58.976 40.000 0.00 0.00 33.26 3.51
725 736 4.458989 AGCACAAAGAGTCAGTCAAAAACA 59.541 37.500 0.00 0.00 0.00 2.83
726 737 4.986622 AGCACAAAGAGTCAGTCAAAAAC 58.013 39.130 0.00 0.00 0.00 2.43
728 739 4.675146 GCAAGCACAAAGAGTCAGTCAAAA 60.675 41.667 0.00 0.00 0.00 2.44
732 743 2.216898 AGCAAGCACAAAGAGTCAGTC 58.783 47.619 0.00 0.00 0.00 3.51
733 744 2.216898 GAGCAAGCACAAAGAGTCAGT 58.783 47.619 0.00 0.00 0.00 3.41
734 745 1.534595 GGAGCAAGCACAAAGAGTCAG 59.465 52.381 0.00 0.00 0.00 3.51
736 747 0.877743 GGGAGCAAGCACAAAGAGTC 59.122 55.000 0.00 0.00 0.00 3.36
737 748 0.538287 GGGGAGCAAGCACAAAGAGT 60.538 55.000 0.00 0.00 0.00 3.24
738 749 0.538057 TGGGGAGCAAGCACAAAGAG 60.538 55.000 0.00 0.00 0.00 2.85
739 750 0.106268 TTGGGGAGCAAGCACAAAGA 60.106 50.000 0.00 0.00 0.00 2.52
740 751 0.032540 GTTGGGGAGCAAGCACAAAG 59.967 55.000 0.00 0.00 0.00 2.77
741 752 0.685785 TGTTGGGGAGCAAGCACAAA 60.686 50.000 0.00 0.00 0.00 2.83
742 753 1.076412 TGTTGGGGAGCAAGCACAA 60.076 52.632 0.00 0.00 0.00 3.33
743 754 1.529010 CTGTTGGGGAGCAAGCACA 60.529 57.895 0.00 0.00 0.00 4.57
746 757 3.376918 GCCTGTTGGGGAGCAAGC 61.377 66.667 0.00 0.00 35.12 4.01
749 1129 3.650950 GAGGCCTGTTGGGGAGCA 61.651 66.667 12.00 0.00 35.12 4.26
754 1134 3.612247 CTCGTGGAGGCCTGTTGGG 62.612 68.421 12.00 0.00 38.36 4.12
768 1148 2.574399 GAAGAAGGCCGAGCTCGT 59.426 61.111 32.41 16.01 37.74 4.18
783 1163 1.305201 GAGACAAACACGGCAAGGAA 58.695 50.000 0.00 0.00 0.00 3.36
785 1165 0.817634 TGGAGACAAACACGGCAAGG 60.818 55.000 0.00 0.00 37.44 3.61
786 1166 0.307760 GTGGAGACAAACACGGCAAG 59.692 55.000 0.00 0.00 46.06 4.01
787 1167 2.399856 GTGGAGACAAACACGGCAA 58.600 52.632 0.00 0.00 46.06 4.52
788 1168 4.134623 GTGGAGACAAACACGGCA 57.865 55.556 0.00 0.00 46.06 5.69
792 1172 0.596600 TCGCTCGTGGAGACAAACAC 60.597 55.000 0.00 0.00 46.06 3.32
793 1173 0.318699 CTCGCTCGTGGAGACAAACA 60.319 55.000 0.00 0.00 46.06 2.83
794 1174 0.318784 ACTCGCTCGTGGAGACAAAC 60.319 55.000 9.11 0.00 46.06 2.93
795 1175 0.318699 CACTCGCTCGTGGAGACAAA 60.319 55.000 9.11 0.00 46.06 2.83
796 1176 1.170290 TCACTCGCTCGTGGAGACAA 61.170 55.000 9.11 0.00 46.06 3.18
797 1177 1.599797 TCACTCGCTCGTGGAGACA 60.600 57.895 9.11 0.00 35.63 3.41
798 1178 1.154188 GTCACTCGCTCGTGGAGAC 60.154 63.158 9.11 1.21 35.63 3.36
799 1179 1.599797 TGTCACTCGCTCGTGGAGA 60.600 57.895 9.11 0.00 35.63 3.71
800 1180 1.442857 GTGTCACTCGCTCGTGGAG 60.443 63.158 0.00 2.66 35.63 3.86
801 1181 2.643272 GTGTCACTCGCTCGTGGA 59.357 61.111 0.00 0.00 35.63 4.02
847 1227 4.104183 GTGGGGGATTTCCGGCGA 62.104 66.667 9.30 0.00 36.71 5.54
853 1233 2.710902 GGCGCAAGTGGGGGATTTC 61.711 63.158 10.83 0.00 41.68 2.17
871 1251 3.059051 GGTAGCCGTAACTGATAGAGTCG 60.059 52.174 0.00 0.00 31.73 4.18
910 1290 1.405105 CGCTGAGAAGAGAGGAGAAGG 59.595 57.143 0.00 0.00 0.00 3.46
912 1292 1.468985 CCGCTGAGAAGAGAGGAGAA 58.531 55.000 0.00 0.00 35.00 2.87
990 1371 3.550431 CCGGTCATGCCTCGGGAT 61.550 66.667 11.60 0.00 40.07 3.85
1042 1423 4.426313 GGGGAGGGGAAACTGCGG 62.426 72.222 0.00 0.00 0.00 5.69
1044 1425 2.677848 GAGGGGAGGGGAAACTGC 59.322 66.667 0.00 0.00 0.00 4.40
1050 1431 3.752167 GTCGAGGAGGGGAGGGGA 61.752 72.222 0.00 0.00 0.00 4.81
1077 1458 1.844289 TAGCCGGAAACAGTGGGGT 60.844 57.895 5.05 0.00 0.00 4.95
1116 1497 3.600898 AAACTGGACCCTACGGCGC 62.601 63.158 6.90 0.00 0.00 6.53
1117 1498 1.447314 GAAACTGGACCCTACGGCG 60.447 63.158 4.80 4.80 0.00 6.46
1348 1734 1.592223 GCTCCTACACGTTGAGCCT 59.408 57.895 12.68 0.00 44.45 4.58
1365 1751 3.067320 GCCATCAATTAAGAAGGGTGAGC 59.933 47.826 0.00 0.00 0.00 4.26
1370 1756 5.595542 TGATTCTGCCATCAATTAAGAAGGG 59.404 40.000 0.00 0.00 29.81 3.95
1383 1771 2.551032 CGCACATGTATGATTCTGCCAT 59.449 45.455 0.00 0.00 0.00 4.40
1384 1772 1.941975 CGCACATGTATGATTCTGCCA 59.058 47.619 0.00 0.00 0.00 4.92
1435 1823 6.156949 GGGTAAGCATATAGGATCCATCTCAA 59.843 42.308 15.82 0.00 0.00 3.02
1522 1944 8.767478 AATTCAGAAATGCTCCAACATAAAAG 57.233 30.769 0.00 0.00 0.00 2.27
1526 1948 8.970020 ACATAAATTCAGAAATGCTCCAACATA 58.030 29.630 0.00 0.00 0.00 2.29
1562 1984 1.315690 CCTGTCCATTAGGCATGCTG 58.684 55.000 18.92 7.71 33.74 4.41
1563 1985 3.815133 CCTGTCCATTAGGCATGCT 57.185 52.632 18.92 6.26 33.74 3.79
1570 1996 5.404946 CACATTTTTCTGCCTGTCCATTAG 58.595 41.667 0.00 0.00 0.00 1.73
1572 1998 3.007182 CCACATTTTTCTGCCTGTCCATT 59.993 43.478 0.00 0.00 0.00 3.16
1581 2007 0.681175 ACCAGGCCACATTTTTCTGC 59.319 50.000 5.01 0.00 0.00 4.26
1582 2008 3.473923 AAACCAGGCCACATTTTTCTG 57.526 42.857 5.01 0.00 0.00 3.02
1595 2021 3.426615 TGGTTATTGCAGGTAAACCAGG 58.573 45.455 15.94 0.00 44.84 4.45
1597 2023 3.158676 GGTGGTTATTGCAGGTAAACCA 58.841 45.455 15.94 15.94 46.88 3.67
1598 2024 3.427573 AGGTGGTTATTGCAGGTAAACC 58.572 45.455 12.21 12.21 41.45 3.27
1600 2026 3.244630 ACGAGGTGGTTATTGCAGGTAAA 60.245 43.478 0.00 0.00 0.00 2.01
1629 2055 9.859152 AAGAAATAGATTCAAATCCCCTCTTAG 57.141 33.333 0.00 0.00 40.72 2.18
1648 2074 7.623999 AGCTGAGGAATGAGGATAAGAAATA 57.376 36.000 0.00 0.00 0.00 1.40
1697 2123 3.066342 CAGCTCAACTTGCATAATCTGGG 59.934 47.826 0.00 0.00 0.00 4.45
1734 2160 5.771165 TGAGCACAACATGATTGGCATATAT 59.229 36.000 0.00 0.00 34.82 0.86
1761 2187 5.835257 ACATGGCAAATTGATATACACTGC 58.165 37.500 0.00 0.00 0.00 4.40
1965 2392 1.930251 TCCAGGAAGAGAGGACAGTG 58.070 55.000 0.00 0.00 0.00 3.66
1969 2396 3.103742 AGTCAATCCAGGAAGAGAGGAC 58.896 50.000 0.00 0.00 33.57 3.85
2048 2475 2.936498 CTCGTGTCCAGTTTGAACAAGT 59.064 45.455 0.00 0.00 0.00 3.16
2191 2618 4.992688 TGCATCCTAATTAAAGCCAAACG 58.007 39.130 0.00 0.00 0.00 3.60
2192 2619 8.143835 ACATATGCATCCTAATTAAAGCCAAAC 58.856 33.333 0.19 0.00 0.00 2.93
2292 2719 1.404391 GCCTGTCGGTCGATCTCTAAA 59.596 52.381 0.00 0.00 0.00 1.85
2382 2809 6.305272 AGAGGAGTGTATCACAACATGAAT 57.695 37.500 0.00 0.00 41.93 2.57
2420 2848 5.014123 TCCAGTCACTTTCATCCCTAAATGT 59.986 40.000 0.00 0.00 0.00 2.71
2426 2854 5.983333 ATATTCCAGTCACTTTCATCCCT 57.017 39.130 0.00 0.00 0.00 4.20
2451 2879 8.150945 TCAGAAGTAGCTCATATGGGAAATAAC 58.849 37.037 6.82 0.00 0.00 1.89
2471 2899 4.518211 AGAAAATGGACTGCACTTCAGAAG 59.482 41.667 8.77 8.77 45.72 2.85
2481 2909 4.936891 ACAACTGAAAGAAAATGGACTGC 58.063 39.130 0.00 0.00 37.43 4.40
2516 2944 0.030101 TTGCGGCGTTCAAGGAAAAG 59.970 50.000 9.37 0.00 0.00 2.27
2562 2990 2.288395 CCACATGGGCAAAACTCACTTC 60.288 50.000 0.00 0.00 0.00 3.01
2608 3036 7.607250 ACAATGACACTTTTAAGTTTTGACCA 58.393 30.769 0.00 0.00 37.08 4.02
2628 3056 5.404968 ACAAACAATGGCATTACGAACAATG 59.595 36.000 13.23 0.15 38.65 2.82
2629 3057 5.537188 ACAAACAATGGCATTACGAACAAT 58.463 33.333 13.23 0.00 0.00 2.71
2635 3063 4.555262 AGGAAACAAACAATGGCATTACG 58.445 39.130 13.23 4.12 0.00 3.18
2643 3071 9.787532 ACATTATATTCGAGGAAACAAACAATG 57.212 29.630 0.00 0.00 0.00 2.82
2687 3115 2.025589 ATGCAGCATGTCAGACAGAG 57.974 50.000 7.23 5.46 39.31 3.35
2709 3137 5.594317 GGAAATAGGCAGCTTAAGATGGAAA 59.406 40.000 21.48 0.00 31.02 3.13
2727 3156 4.229582 AGCTTGGTGGACTAATGGGAAATA 59.770 41.667 0.00 0.00 0.00 1.40
2736 3165 2.708861 TGGAAGAAGCTTGGTGGACTAA 59.291 45.455 2.10 0.00 0.00 2.24
2817 3246 4.214971 GCAATTGCCATGATAGACAGGTAG 59.785 45.833 20.06 0.00 34.31 3.18
3080 3509 2.851008 GCGTGAGTTGCTTGTCAAAGAC 60.851 50.000 0.00 0.00 36.26 3.01
3096 3525 3.582242 ATGTTGCATGGGGGCGTGA 62.582 57.895 0.00 0.00 36.28 4.35
3101 3530 1.380785 AGCTGATGTTGCATGGGGG 60.381 57.895 0.00 0.00 0.00 5.40
3182 3611 1.000396 CTCCCTGCCTTTTCCCCTG 60.000 63.158 0.00 0.00 0.00 4.45
3227 3656 1.352083 CACTTCCCTTCTCACCCTGA 58.648 55.000 0.00 0.00 0.00 3.86
3248 3677 4.697514 TGAGCAGATTAAGAAGGGAATCG 58.302 43.478 0.00 0.00 37.19 3.34
3274 3703 1.332686 GTTTTTGGTCCACCGAGTGTC 59.667 52.381 0.00 0.00 39.43 3.67
3317 3746 6.479006 TCTCCATGTCTGATCAAAATTCTGT 58.521 36.000 0.00 0.00 0.00 3.41
3397 3826 2.034687 GCTTCTGCCCTTCCTGCA 59.965 61.111 0.00 0.00 37.17 4.41
3506 3935 3.857309 GACAGGCTTGGCACCAGCT 62.857 63.158 10.74 0.00 41.70 4.24
3630 4059 1.135915 AGATGCGTCTTCTGGTGCTAG 59.864 52.381 1.48 0.00 0.00 3.42
3651 4080 6.320926 TCATCTGAAACAACAAAGTCATCCAA 59.679 34.615 0.00 0.00 0.00 3.53
3656 4085 6.543465 ACTCATCATCTGAAACAACAAAGTCA 59.457 34.615 0.00 0.00 32.14 3.41
3668 4097 3.674410 GCACGTCTGACTCATCATCTGAA 60.674 47.826 6.21 0.00 33.22 3.02
3674 4103 0.244721 CCAGCACGTCTGACTCATCA 59.755 55.000 14.19 0.00 45.72 3.07
3680 4109 3.479370 GCATCCAGCACGTCTGAC 58.521 61.111 14.19 0.00 45.72 3.51
3696 4125 4.450419 CAGATAATCTTCAGGTTCATCGGC 59.550 45.833 0.00 0.00 0.00 5.54
3707 4136 4.224147 TCCAACGGTTCCAGATAATCTTCA 59.776 41.667 0.00 0.00 0.00 3.02
3725 4154 1.990799 TGTCGTCGACATCATCCAAC 58.009 50.000 23.70 0.00 37.67 3.77
3736 4165 2.021457 TGCTATCTGGAATGTCGTCGA 58.979 47.619 0.00 0.00 0.00 4.20
3737 4166 2.389059 CTGCTATCTGGAATGTCGTCG 58.611 52.381 0.00 0.00 0.00 5.12
3740 4169 1.135046 CGCTGCTATCTGGAATGTCG 58.865 55.000 0.00 0.00 0.00 4.35
3744 4173 1.610102 GGATGCGCTGCTATCTGGAAT 60.610 52.381 9.73 0.00 0.00 3.01
3747 4176 1.670406 GGGATGCGCTGCTATCTGG 60.670 63.158 9.73 0.00 0.00 3.86
3766 4195 4.160329 ACTACCTTCCAGACTGTCATCAA 58.840 43.478 10.88 0.00 0.00 2.57
3839 4268 1.653094 CTCGAGACTTCGCCAGCTCT 61.653 60.000 6.58 0.00 46.28 4.09
3851 4280 2.419739 GCCCCTGAGTCCTCGAGAC 61.420 68.421 15.71 10.33 46.71 3.36
3857 4286 1.076632 CGAGTAGCCCCTGAGTCCT 60.077 63.158 0.00 0.00 0.00 3.85
3916 4345 2.202797 CACCAGCGGATCAGGACG 60.203 66.667 0.00 0.00 0.00 4.79
3989 4421 1.153429 GGAATGGAGGGTCGTTCGG 60.153 63.158 0.00 0.00 34.43 4.30
4034 4466 8.547967 TTGCTCATTTACAACTTTCTACCTAG 57.452 34.615 0.00 0.00 0.00 3.02
4086 4519 2.434884 ACAGCAACAGATCCGCGG 60.435 61.111 22.12 22.12 0.00 6.46
4087 4520 1.086067 ATGACAGCAACAGATCCGCG 61.086 55.000 0.00 0.00 0.00 6.46
4088 4521 0.376152 CATGACAGCAACAGATCCGC 59.624 55.000 0.00 0.00 0.00 5.54
4089 4522 1.662629 GACATGACAGCAACAGATCCG 59.337 52.381 0.00 0.00 0.00 4.18
4091 4524 2.983229 AGGACATGACAGCAACAGATC 58.017 47.619 0.00 0.00 0.00 2.75
4092 4525 3.517100 ACTAGGACATGACAGCAACAGAT 59.483 43.478 0.00 0.00 0.00 2.90
4093 4526 2.899900 ACTAGGACATGACAGCAACAGA 59.100 45.455 0.00 0.00 0.00 3.41
4096 4536 4.319177 AGAAACTAGGACATGACAGCAAC 58.681 43.478 0.00 0.00 0.00 4.17
4114 4554 5.801380 AGTCCGGCTAATCAACTAAAGAAA 58.199 37.500 0.00 0.00 0.00 2.52
4118 4558 4.222145 ACAGAGTCCGGCTAATCAACTAAA 59.778 41.667 0.00 0.00 0.00 1.85
4132 4572 5.522824 GCTTATTTAACCCTAACAGAGTCCG 59.477 44.000 0.00 0.00 0.00 4.79
4156 4596 0.593128 AGCACGGCTTACAGCTTTTG 59.407 50.000 0.00 0.00 41.99 2.44
4194 4638 1.671850 CCTACAACACCAGCGGTACAG 60.672 57.143 0.00 0.00 32.11 2.74
4196 4640 1.017701 GCCTACAACACCAGCGGTAC 61.018 60.000 0.00 0.00 32.11 3.34
4200 4644 1.577328 CCTTGCCTACAACACCAGCG 61.577 60.000 0.00 0.00 0.00 5.18
4205 4649 2.162681 AGATTGCCTTGCCTACAACAC 58.837 47.619 0.00 0.00 0.00 3.32
4228 4674 0.535797 ACCGAATCGAGGAGGGAAAC 59.464 55.000 3.36 0.00 0.00 2.78
4279 4729 0.246635 AACAGTATCAACGAGCCGCT 59.753 50.000 0.00 0.00 0.00 5.52
4281 4731 1.920574 CAGAACAGTATCAACGAGCCG 59.079 52.381 0.00 0.00 0.00 5.52
4311 4770 1.132453 CACCGAAGACTGATACGAGCA 59.868 52.381 0.00 0.00 0.00 4.26
4312 4771 1.828832 CACCGAAGACTGATACGAGC 58.171 55.000 0.00 0.00 0.00 5.03
4313 4772 1.132453 TGCACCGAAGACTGATACGAG 59.868 52.381 0.00 0.00 0.00 4.18
4315 4774 2.120232 GATGCACCGAAGACTGATACG 58.880 52.381 0.00 0.00 0.00 3.06
4316 4775 3.444703 AGATGCACCGAAGACTGATAC 57.555 47.619 0.00 0.00 0.00 2.24
4317 4776 4.401202 TGTTAGATGCACCGAAGACTGATA 59.599 41.667 0.00 0.00 0.00 2.15
4318 4777 3.195610 TGTTAGATGCACCGAAGACTGAT 59.804 43.478 0.00 0.00 0.00 2.90
4319 4778 2.560981 TGTTAGATGCACCGAAGACTGA 59.439 45.455 0.00 0.00 0.00 3.41
4321 4780 2.671351 CGTGTTAGATGCACCGAAGACT 60.671 50.000 0.00 0.00 33.61 3.24
4322 4781 1.654105 CGTGTTAGATGCACCGAAGAC 59.346 52.381 0.00 0.00 33.61 3.01
4323 4782 1.403647 CCGTGTTAGATGCACCGAAGA 60.404 52.381 0.00 0.00 33.61 2.87
4324 4783 0.999406 CCGTGTTAGATGCACCGAAG 59.001 55.000 0.00 0.00 33.61 3.79
4326 4785 0.108992 GACCGTGTTAGATGCACCGA 60.109 55.000 0.00 0.00 33.61 4.69
4328 4787 1.359848 CAGACCGTGTTAGATGCACC 58.640 55.000 0.00 0.00 33.61 5.01
4330 4789 1.262417 TCCAGACCGTGTTAGATGCA 58.738 50.000 0.00 0.00 0.00 3.96
4331 4790 2.205074 CATCCAGACCGTGTTAGATGC 58.795 52.381 0.00 0.00 0.00 3.91
4332 4791 2.205074 GCATCCAGACCGTGTTAGATG 58.795 52.381 0.00 0.00 35.36 2.90
4334 4793 1.262417 TGCATCCAGACCGTGTTAGA 58.738 50.000 0.00 0.00 0.00 2.10
4335 4794 1.935873 CATGCATCCAGACCGTGTTAG 59.064 52.381 0.00 0.00 0.00 2.34
4336 4795 2.011548 GCATGCATCCAGACCGTGTTA 61.012 52.381 14.21 0.00 0.00 2.41
4337 4796 1.308069 GCATGCATCCAGACCGTGTT 61.308 55.000 14.21 0.00 0.00 3.32
4338 4797 1.746615 GCATGCATCCAGACCGTGT 60.747 57.895 14.21 0.00 0.00 4.49
4339 4798 1.450848 AGCATGCATCCAGACCGTG 60.451 57.895 21.98 0.00 0.00 4.94
4340 4799 1.450848 CAGCATGCATCCAGACCGT 60.451 57.895 21.98 0.00 0.00 4.83
4341 4800 3.417601 CAGCATGCATCCAGACCG 58.582 61.111 21.98 0.00 0.00 4.79
4352 4811 2.520982 CCAGGGGATGGCAGCATG 60.521 66.667 4.64 0.00 43.83 4.06
4410 4872 0.949397 CCATGATCCATGAAGTGCCG 59.051 55.000 8.38 0.00 43.81 5.69
4415 4877 6.301486 TCAGGAATTACCATGATCCATGAAG 58.699 40.000 8.38 0.00 43.81 3.02
4417 4879 5.910355 TCAGGAATTACCATGATCCATGA 57.090 39.130 8.38 0.00 43.81 3.07
4422 4884 4.660168 AGGCATCAGGAATTACCATGATC 58.340 43.478 0.00 0.00 42.04 2.92
4423 4885 4.736611 AGGCATCAGGAATTACCATGAT 57.263 40.909 0.00 0.00 42.04 2.45
4424 4886 4.524802 AAGGCATCAGGAATTACCATGA 57.475 40.909 0.00 0.00 42.04 3.07
4432 4894 4.328118 AAGGAGAAAAGGCATCAGGAAT 57.672 40.909 0.00 0.00 0.00 3.01
4442 4904 6.183360 TGCAGAGAAAAAGAAAGGAGAAAAGG 60.183 38.462 0.00 0.00 0.00 3.11
4528 5007 1.302033 CACGAGGAAAGCTGCAGGT 60.302 57.895 13.85 13.85 0.00 4.00
4540 5023 3.669023 GCTTTGCTTTCTTCATCACGAGG 60.669 47.826 0.00 0.00 0.00 4.63
4557 5040 1.202222 GCCATCGACTCCATTGCTTTG 60.202 52.381 0.00 0.00 0.00 2.77
4560 5043 1.153086 GGCCATCGACTCCATTGCT 60.153 57.895 0.00 0.00 0.00 3.91
4561 5044 1.153086 AGGCCATCGACTCCATTGC 60.153 57.895 5.01 0.00 0.00 3.56
4562 5045 2.997899 GAGGCCATCGACTCCATTG 58.002 57.895 5.01 0.00 0.00 2.82
4572 5055 1.227205 CTGAGCTGACGAGGCCATC 60.227 63.158 5.01 0.00 0.00 3.51
4575 5058 2.183046 GACTGAGCTGACGAGGCC 59.817 66.667 0.00 0.00 0.00 5.19
4576 5059 2.202544 CGACTGAGCTGACGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
4577 5060 2.202544 GCGACTGAGCTGACGAGG 60.203 66.667 0.00 0.00 0.00 4.63
4578 5061 1.513800 CTGCGACTGAGCTGACGAG 60.514 63.158 0.00 0.00 38.16 4.18
4581 5064 1.445238 GGACTGCGACTGAGCTGAC 60.445 63.158 0.00 7.04 39.04 3.51
4583 5066 0.390866 AATGGACTGCGACTGAGCTG 60.391 55.000 0.00 5.59 41.08 4.24
4584 5067 1.186200 TAATGGACTGCGACTGAGCT 58.814 50.000 0.00 0.00 38.13 4.09
4587 5070 3.885724 TCAATAATGGACTGCGACTGA 57.114 42.857 0.00 0.00 0.00 3.41
4588 5071 3.183172 CGATCAATAATGGACTGCGACTG 59.817 47.826 0.00 0.00 0.00 3.51
4589 5072 3.384668 CGATCAATAATGGACTGCGACT 58.615 45.455 0.00 0.00 0.00 4.18
4591 5074 2.754472 CCGATCAATAATGGACTGCGA 58.246 47.619 0.00 0.00 0.00 5.10
4592 5075 1.195448 GCCGATCAATAATGGACTGCG 59.805 52.381 0.00 0.00 0.00 5.18
4593 5076 2.498167 AGCCGATCAATAATGGACTGC 58.502 47.619 0.00 0.00 0.00 4.40
4594 5077 4.212847 CAGAAGCCGATCAATAATGGACTG 59.787 45.833 0.00 0.00 0.00 3.51
4595 5078 4.141620 ACAGAAGCCGATCAATAATGGACT 60.142 41.667 0.00 0.00 0.00 3.85
4597 5080 4.422073 ACAGAAGCCGATCAATAATGGA 57.578 40.909 0.00 0.00 0.00 3.41
4632 5122 3.615509 TTCCTTACCTTGGCGGCCG 62.616 63.158 24.05 24.05 35.61 6.13
4638 5128 3.187842 GCGTGTTTACTTCCTTACCTTGG 59.812 47.826 0.00 0.00 0.00 3.61
4640 5130 4.075963 TGCGTGTTTACTTCCTTACCTT 57.924 40.909 0.00 0.00 0.00 3.50
4648 5138 3.927142 AGTGAGCTATGCGTGTTTACTTC 59.073 43.478 0.00 0.00 0.00 3.01
4675 5175 0.036952 AAGGAGTGCGTGGATCACAG 60.037 55.000 0.00 0.00 36.93 3.66
4704 5206 0.546122 ACACCAAAGCAGAGACACCA 59.454 50.000 0.00 0.00 0.00 4.17
4706 5208 1.869767 CAGACACCAAAGCAGAGACAC 59.130 52.381 0.00 0.00 0.00 3.67
4712 5214 1.604593 CCCCCAGACACCAAAGCAG 60.605 63.158 0.00 0.00 0.00 4.24
4736 5239 2.501610 GTCCAGTCGCCCAGATCC 59.498 66.667 0.00 0.00 0.00 3.36
4748 5252 0.673644 CTGGCCAACTAACCGTCCAG 60.674 60.000 7.01 0.00 35.68 3.86
4766 5270 4.008933 GCAGGGGCACGTGAGACT 62.009 66.667 22.23 10.17 40.72 3.24
4831 5342 2.099756 CACACACACAGAGAGTCACAGA 59.900 50.000 0.00 0.00 0.00 3.41
4835 5346 1.136891 CACCACACACACAGAGAGTCA 59.863 52.381 0.00 0.00 0.00 3.41
4837 5348 1.134699 CACACCACACACACAGAGAGT 60.135 52.381 0.00 0.00 0.00 3.24
4840 5351 1.935873 CTTCACACCACACACACAGAG 59.064 52.381 0.00 0.00 0.00 3.35
4844 5357 0.098728 GTGCTTCACACCACACACAC 59.901 55.000 0.00 0.00 44.02 3.82
4856 5369 2.489329 GGCAGCTTTAATCAGTGCTTCA 59.511 45.455 0.00 0.00 34.46 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.