Multiple sequence alignment - TraesCS6A01G377200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G377200 chr6A 100.000 2526 0 0 1 2526 598577250 598574725 0.000000e+00 4665
1 TraesCS6A01G377200 chr6A 86.712 888 56 20 967 1818 598521079 598520218 0.000000e+00 929
2 TraesCS6A01G377200 chr6A 86.599 888 57 20 967 1818 598253780 598252919 0.000000e+00 924
3 TraesCS6A01G377200 chr6A 86.599 888 57 20 967 1818 598327064 598326203 0.000000e+00 924
4 TraesCS6A01G377200 chr6A 86.486 888 58 20 967 1818 598461148 598460287 0.000000e+00 918
5 TraesCS6A01G377200 chr6A 86.036 888 62 20 967 1818 598568867 598568006 0.000000e+00 896
6 TraesCS6A01G377200 chr6A 82.838 303 29 18 1363 1649 598207508 598207213 1.500000e-62 250
7 TraesCS6A01G377200 chr7A 96.336 655 14 2 1 645 563326698 563327352 0.000000e+00 1068
8 TraesCS6A01G377200 chr7A 96.325 653 15 1 1 644 688622924 688623576 0.000000e+00 1064
9 TraesCS6A01G377200 chr7A 96.319 652 14 2 1 643 563295687 563296337 0.000000e+00 1062
10 TraesCS6A01G377200 chr7A 95.745 658 17 3 1 647 563323132 563322475 0.000000e+00 1050
11 TraesCS6A01G377200 chr7A 94.962 655 22 3 1 645 280961540 280960887 0.000000e+00 1016
12 TraesCS6A01G377200 chr2A 96.177 654 15 2 1 644 102059157 102058504 0.000000e+00 1061
13 TraesCS6A01G377200 chr4A 95.566 654 17 6 1 644 613314634 613313983 0.000000e+00 1037
14 TraesCS6A01G377200 chr4A 95.238 651 14 6 4 645 491721511 491720869 0.000000e+00 1014
15 TraesCS6A01G377200 chr5A 97.793 589 11 1 1 589 108625068 108625654 0.000000e+00 1014
16 TraesCS6A01G377200 chr5A 87.315 473 52 6 1820 2288 331925303 331925771 3.700000e-148 534
17 TraesCS6A01G377200 chrUn 90.559 519 38 7 1823 2340 374527144 374527652 0.000000e+00 676
18 TraesCS6A01G377200 chrUn 90.366 519 39 7 1823 2340 22169473 22168965 0.000000e+00 671
19 TraesCS6A01G377200 chrUn 90.366 519 39 7 1823 2340 374528997 374529505 0.000000e+00 671
20 TraesCS6A01G377200 chrUn 89.978 449 35 6 1823 2270 336449532 336449093 2.820000e-159 571
21 TraesCS6A01G377200 chrUn 93.699 365 14 4 961 1320 341387508 341387868 2.860000e-149 538
22 TraesCS6A01G377200 chrUn 91.813 171 13 1 2357 2526 22168896 22168726 1.170000e-58 237
23 TraesCS6A01G377200 chrUn 91.813 171 13 1 2357 2526 333834537 333834707 1.170000e-58 237
24 TraesCS6A01G377200 chrUn 91.813 171 13 1 2357 2526 374527721 374527891 1.170000e-58 237
25 TraesCS6A01G377200 chrUn 91.813 171 13 1 2357 2526 374529574 374529744 1.170000e-58 237
26 TraesCS6A01G377200 chr1B 89.981 519 41 8 1823 2340 121408822 121408314 0.000000e+00 660
27 TraesCS6A01G377200 chr1B 93.567 171 8 2 2357 2526 121408245 121408077 4.170000e-63 252
28 TraesCS6A01G377200 chr1B 87.111 225 16 4 430 644 624496967 624496746 2.510000e-60 243
29 TraesCS6A01G377200 chr2B 89.484 523 35 10 1819 2340 155029795 155029292 0.000000e+00 643
30 TraesCS6A01G377200 chr2B 94.152 171 9 1 2357 2526 155029223 155029053 2.490000e-65 259
31 TraesCS6A01G377200 chr6B 80.153 917 109 38 947 1809 687413629 687412732 3.570000e-173 617
32 TraesCS6A01G377200 chr6B 88.025 476 32 8 963 1414 687372481 687372007 7.950000e-150 540
33 TraesCS6A01G377200 chr6B 83.005 659 42 28 961 1556 687367208 687366557 1.330000e-147 532
34 TraesCS6A01G377200 chr6B 86.653 472 54 7 1821 2288 240551457 240550991 4.820000e-142 514
35 TraesCS6A01G377200 chr6B 91.538 130 10 1 1540 1668 687366539 687366410 7.180000e-41 178
36 TraesCS6A01G377200 chr6B 77.885 312 36 23 1251 1537 687317799 687317496 2.010000e-36 163
37 TraesCS6A01G377200 chr6D 84.019 632 49 27 1067 1668 452623536 452622927 6.100000e-156 560
38 TraesCS6A01G377200 chr6D 83.654 624 56 28 1001 1596 452709802 452709197 1.710000e-151 545
39 TraesCS6A01G377200 chr6D 84.361 454 28 21 1251 1668 452641702 452641256 3.030000e-109 405
40 TraesCS6A01G377200 chr6D 83.459 266 30 12 1363 1618 452592919 452592658 4.200000e-58 235
41 TraesCS6A01G377200 chr1A 87.742 155 9 2 501 645 545018776 545018930 3.340000e-39 172
42 TraesCS6A01G377200 chr1D 83.200 125 10 11 1823 1943 55034329 55034446 1.240000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G377200 chr6A 598574725 598577250 2525 True 4665.00 4665 100.00000 1 2526 1 chr6A.!!$R7 2525
1 TraesCS6A01G377200 chr6A 598520218 598521079 861 True 929.00 929 86.71200 967 1818 1 chr6A.!!$R5 851
2 TraesCS6A01G377200 chr6A 598252919 598253780 861 True 924.00 924 86.59900 967 1818 1 chr6A.!!$R2 851
3 TraesCS6A01G377200 chr6A 598326203 598327064 861 True 924.00 924 86.59900 967 1818 1 chr6A.!!$R3 851
4 TraesCS6A01G377200 chr6A 598460287 598461148 861 True 918.00 918 86.48600 967 1818 1 chr6A.!!$R4 851
5 TraesCS6A01G377200 chr6A 598568006 598568867 861 True 896.00 896 86.03600 967 1818 1 chr6A.!!$R6 851
6 TraesCS6A01G377200 chr7A 563326698 563327352 654 False 1068.00 1068 96.33600 1 645 1 chr7A.!!$F2 644
7 TraesCS6A01G377200 chr7A 688622924 688623576 652 False 1064.00 1064 96.32500 1 644 1 chr7A.!!$F3 643
8 TraesCS6A01G377200 chr7A 563295687 563296337 650 False 1062.00 1062 96.31900 1 643 1 chr7A.!!$F1 642
9 TraesCS6A01G377200 chr7A 563322475 563323132 657 True 1050.00 1050 95.74500 1 647 1 chr7A.!!$R2 646
10 TraesCS6A01G377200 chr7A 280960887 280961540 653 True 1016.00 1016 94.96200 1 645 1 chr7A.!!$R1 644
11 TraesCS6A01G377200 chr2A 102058504 102059157 653 True 1061.00 1061 96.17700 1 644 1 chr2A.!!$R1 643
12 TraesCS6A01G377200 chr4A 613313983 613314634 651 True 1037.00 1037 95.56600 1 644 1 chr4A.!!$R2 643
13 TraesCS6A01G377200 chr4A 491720869 491721511 642 True 1014.00 1014 95.23800 4 645 1 chr4A.!!$R1 641
14 TraesCS6A01G377200 chr5A 108625068 108625654 586 False 1014.00 1014 97.79300 1 589 1 chr5A.!!$F1 588
15 TraesCS6A01G377200 chrUn 374527144 374529744 2600 False 455.25 676 91.13775 1823 2526 4 chrUn.!!$F3 703
16 TraesCS6A01G377200 chrUn 22168726 22169473 747 True 454.00 671 91.08950 1823 2526 2 chrUn.!!$R2 703
17 TraesCS6A01G377200 chr1B 121408077 121408822 745 True 456.00 660 91.77400 1823 2526 2 chr1B.!!$R2 703
18 TraesCS6A01G377200 chr2B 155029053 155029795 742 True 451.00 643 91.81800 1819 2526 2 chr2B.!!$R1 707
19 TraesCS6A01G377200 chr6B 687412732 687413629 897 True 617.00 617 80.15300 947 1809 1 chr6B.!!$R4 862
20 TraesCS6A01G377200 chr6B 687366410 687367208 798 True 355.00 532 87.27150 961 1668 2 chr6B.!!$R5 707
21 TraesCS6A01G377200 chr6D 452622927 452623536 609 True 560.00 560 84.01900 1067 1668 1 chr6D.!!$R2 601
22 TraesCS6A01G377200 chr6D 452709197 452709802 605 True 545.00 545 83.65400 1001 1596 1 chr6D.!!$R4 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 715 0.036765 ACAAAAGGGATGCGCGTAGA 60.037 50.0 8.43 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 4374 0.101219 GCAAATCGATTCCAGGCCAC 59.899 55.0 11.83 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.551977 CCCCACTTATAAGGTCATCCCTAAT 59.448 44.000 16.73 0.00 45.47 1.73
647 658 3.636231 CAGGACGGGCCCTGTTGA 61.636 66.667 22.43 0.00 46.62 3.18
648 659 2.852075 AGGACGGGCCCTGTTGAA 60.852 61.111 22.43 0.00 37.37 2.69
649 660 2.359975 GGACGGGCCCTGTTGAAG 60.360 66.667 22.43 4.34 0.00 3.02
650 661 2.747686 GACGGGCCCTGTTGAAGA 59.252 61.111 22.43 0.00 0.00 2.87
651 662 1.072505 GACGGGCCCTGTTGAAGAA 59.927 57.895 22.43 0.00 0.00 2.52
652 663 0.322546 GACGGGCCCTGTTGAAGAAT 60.323 55.000 22.43 0.00 0.00 2.40
653 664 0.609131 ACGGGCCCTGTTGAAGAATG 60.609 55.000 22.43 1.14 0.00 2.67
654 665 1.315257 CGGGCCCTGTTGAAGAATGG 61.315 60.000 22.43 0.00 0.00 3.16
655 666 0.972471 GGGCCCTGTTGAAGAATGGG 60.972 60.000 17.04 0.00 40.74 4.00
656 667 0.972471 GGCCCTGTTGAAGAATGGGG 60.972 60.000 0.00 0.00 38.34 4.96
657 668 0.039618 GCCCTGTTGAAGAATGGGGA 59.960 55.000 0.00 0.00 38.34 4.81
658 669 1.549950 GCCCTGTTGAAGAATGGGGAA 60.550 52.381 0.00 0.00 38.34 3.97
659 670 2.171003 CCCTGTTGAAGAATGGGGAAC 58.829 52.381 0.00 0.00 36.17 3.62
660 671 2.490718 CCCTGTTGAAGAATGGGGAACA 60.491 50.000 0.00 0.00 36.17 3.18
661 672 3.230134 CCTGTTGAAGAATGGGGAACAA 58.770 45.455 0.00 0.00 0.00 2.83
662 673 3.834231 CCTGTTGAAGAATGGGGAACAAT 59.166 43.478 0.00 0.00 0.00 2.71
663 674 4.284234 CCTGTTGAAGAATGGGGAACAATT 59.716 41.667 0.00 0.00 0.00 2.32
664 675 5.221702 CCTGTTGAAGAATGGGGAACAATTT 60.222 40.000 0.00 0.00 0.00 1.82
665 676 5.852827 TGTTGAAGAATGGGGAACAATTTC 58.147 37.500 0.00 0.00 0.00 2.17
680 691 7.230466 GAACAATTTCCATTGATGATGAAGC 57.770 36.000 1.97 0.00 42.35 3.86
681 692 6.288941 ACAATTTCCATTGATGATGAAGCA 57.711 33.333 1.97 0.00 42.35 3.91
682 693 6.703319 ACAATTTCCATTGATGATGAAGCAA 58.297 32.000 1.97 0.00 42.35 3.91
683 694 7.162761 ACAATTTCCATTGATGATGAAGCAAA 58.837 30.769 1.97 0.00 42.35 3.68
684 695 7.827236 ACAATTTCCATTGATGATGAAGCAAAT 59.173 29.630 1.97 0.00 42.35 2.32
685 696 9.320352 CAATTTCCATTGATGATGAAGCAAATA 57.680 29.630 0.00 0.00 42.35 1.40
686 697 8.882415 ATTTCCATTGATGATGAAGCAAATAC 57.118 30.769 0.00 0.00 38.03 1.89
687 698 7.407393 TTCCATTGATGATGAAGCAAATACA 57.593 32.000 0.00 0.00 38.03 2.29
688 699 7.407393 TCCATTGATGATGAAGCAAATACAA 57.593 32.000 0.00 0.00 38.03 2.41
689 700 7.838884 TCCATTGATGATGAAGCAAATACAAA 58.161 30.769 0.00 0.00 38.03 2.83
690 701 8.312564 TCCATTGATGATGAAGCAAATACAAAA 58.687 29.630 0.00 0.00 38.03 2.44
691 702 8.600625 CCATTGATGATGAAGCAAATACAAAAG 58.399 33.333 0.00 0.00 38.03 2.27
692 703 8.600625 CATTGATGATGAAGCAAATACAAAAGG 58.399 33.333 0.00 0.00 38.03 3.11
693 704 6.632909 TGATGATGAAGCAAATACAAAAGGG 58.367 36.000 0.00 0.00 0.00 3.95
694 705 6.436847 TGATGATGAAGCAAATACAAAAGGGA 59.563 34.615 0.00 0.00 0.00 4.20
695 706 6.855763 TGATGAAGCAAATACAAAAGGGAT 57.144 33.333 0.00 0.00 0.00 3.85
696 707 6.632909 TGATGAAGCAAATACAAAAGGGATG 58.367 36.000 0.00 0.00 0.00 3.51
697 708 4.819769 TGAAGCAAATACAAAAGGGATGC 58.180 39.130 0.00 0.00 0.00 3.91
698 709 3.508744 AGCAAATACAAAAGGGATGCG 57.491 42.857 0.00 0.00 37.40 4.73
699 710 1.926510 GCAAATACAAAAGGGATGCGC 59.073 47.619 0.00 0.00 0.00 6.09
700 711 2.184448 CAAATACAAAAGGGATGCGCG 58.816 47.619 0.00 0.00 0.00 6.86
701 712 1.459450 AATACAAAAGGGATGCGCGT 58.541 45.000 8.43 0.00 0.00 6.01
702 713 2.319136 ATACAAAAGGGATGCGCGTA 57.681 45.000 8.43 2.40 0.00 4.42
703 714 1.647346 TACAAAAGGGATGCGCGTAG 58.353 50.000 8.43 0.00 0.00 3.51
704 715 0.036765 ACAAAAGGGATGCGCGTAGA 60.037 50.000 8.43 0.00 0.00 2.59
705 716 1.299541 CAAAAGGGATGCGCGTAGAT 58.700 50.000 8.43 0.00 0.00 1.98
706 717 1.003545 CAAAAGGGATGCGCGTAGATG 60.004 52.381 8.43 0.00 0.00 2.90
707 718 0.178068 AAAGGGATGCGCGTAGATGT 59.822 50.000 8.43 0.00 0.00 3.06
708 719 0.178068 AAGGGATGCGCGTAGATGTT 59.822 50.000 8.43 0.00 0.00 2.71
709 720 0.530650 AGGGATGCGCGTAGATGTTG 60.531 55.000 8.43 0.00 0.00 3.33
710 721 0.529773 GGGATGCGCGTAGATGTTGA 60.530 55.000 8.43 0.00 0.00 3.18
711 722 1.502231 GGATGCGCGTAGATGTTGAT 58.498 50.000 8.43 0.00 0.00 2.57
712 723 1.457303 GGATGCGCGTAGATGTTGATC 59.543 52.381 8.43 0.00 0.00 2.92
713 724 2.127251 GATGCGCGTAGATGTTGATCA 58.873 47.619 8.43 0.00 0.00 2.92
714 725 2.003196 TGCGCGTAGATGTTGATCAA 57.997 45.000 8.43 3.38 0.00 2.57
715 726 2.549926 TGCGCGTAGATGTTGATCAAT 58.450 42.857 12.12 0.00 0.00 2.57
716 727 2.284952 TGCGCGTAGATGTTGATCAATG 59.715 45.455 12.12 0.00 0.00 2.82
717 728 2.539688 GCGCGTAGATGTTGATCAATGA 59.460 45.455 12.12 1.85 0.00 2.57
718 729 3.185188 GCGCGTAGATGTTGATCAATGAT 59.815 43.478 12.12 7.01 0.00 2.45
719 730 4.665142 GCGCGTAGATGTTGATCAATGATC 60.665 45.833 15.86 15.86 39.31 2.92
720 731 4.445385 CGCGTAGATGTTGATCAATGATCA 59.555 41.667 20.85 20.85 45.78 2.92
730 741 5.139435 TGATCAATGATCAGACGGGTATC 57.861 43.478 20.85 0.00 43.11 2.24
731 742 3.643159 TCAATGATCAGACGGGTATCG 57.357 47.619 0.09 0.00 45.88 2.92
732 743 4.321304 GATCAATGATCAGACGGGTATCGT 60.321 45.833 17.60 0.00 45.29 3.73
733 744 6.126433 GATCAATGATCAGACGGGTATCGTC 61.126 48.000 17.60 10.11 46.99 4.20
743 754 3.614159 CGGGTATCGTCGATCAAGTAA 57.386 47.619 11.82 0.00 0.00 2.24
744 755 3.552541 CGGGTATCGTCGATCAAGTAAG 58.447 50.000 11.82 0.00 0.00 2.34
745 756 3.608707 CGGGTATCGTCGATCAAGTAAGG 60.609 52.174 11.82 0.00 0.00 2.69
746 757 3.567164 GGGTATCGTCGATCAAGTAAGGA 59.433 47.826 11.82 0.00 0.00 3.36
747 758 4.037208 GGGTATCGTCGATCAAGTAAGGAA 59.963 45.833 11.82 0.00 0.00 3.36
748 759 5.278858 GGGTATCGTCGATCAAGTAAGGAAT 60.279 44.000 11.82 0.00 0.00 3.01
749 760 6.072286 GGGTATCGTCGATCAAGTAAGGAATA 60.072 42.308 11.82 0.00 0.00 1.75
750 761 7.365741 GGTATCGTCGATCAAGTAAGGAATAA 58.634 38.462 11.82 0.00 0.00 1.40
751 762 7.325579 GGTATCGTCGATCAAGTAAGGAATAAC 59.674 40.741 11.82 0.00 0.00 1.89
752 763 6.446781 TCGTCGATCAAGTAAGGAATAACT 57.553 37.500 0.00 0.00 0.00 2.24
753 764 7.558161 TCGTCGATCAAGTAAGGAATAACTA 57.442 36.000 0.00 0.00 0.00 2.24
754 765 7.412853 TCGTCGATCAAGTAAGGAATAACTAC 58.587 38.462 0.00 0.00 0.00 2.73
755 766 7.281774 TCGTCGATCAAGTAAGGAATAACTACT 59.718 37.037 0.00 0.00 0.00 2.57
756 767 8.554528 CGTCGATCAAGTAAGGAATAACTACTA 58.445 37.037 0.00 0.00 0.00 1.82
757 768 9.662545 GTCGATCAAGTAAGGAATAACTACTAC 57.337 37.037 0.00 0.00 0.00 2.73
758 769 9.624373 TCGATCAAGTAAGGAATAACTACTACT 57.376 33.333 0.00 0.00 0.00 2.57
770 781 9.242477 GGAATAACTACTACTAGTTTTAAGCCG 57.758 37.037 0.00 0.00 39.79 5.52
771 782 9.242477 GAATAACTACTACTAGTTTTAAGCCGG 57.758 37.037 0.00 0.00 39.79 6.13
772 783 5.003692 ACTACTACTAGTTTTAAGCCGGC 57.996 43.478 21.89 21.89 27.62 6.13
773 784 4.708909 ACTACTACTAGTTTTAAGCCGGCT 59.291 41.667 27.08 27.08 27.62 5.52
774 785 5.888161 ACTACTACTAGTTTTAAGCCGGCTA 59.112 40.000 33.07 13.32 27.62 3.93
775 786 5.866159 ACTACTAGTTTTAAGCCGGCTAT 57.134 39.130 33.07 21.81 0.00 2.97
776 787 5.840715 ACTACTAGTTTTAAGCCGGCTATC 58.159 41.667 33.07 17.66 0.00 2.08
777 788 4.748277 ACTAGTTTTAAGCCGGCTATCA 57.252 40.909 33.07 15.80 0.00 2.15
778 789 5.291905 ACTAGTTTTAAGCCGGCTATCAT 57.708 39.130 33.07 17.51 0.00 2.45
779 790 5.298347 ACTAGTTTTAAGCCGGCTATCATC 58.702 41.667 33.07 19.85 0.00 2.92
780 791 4.150897 AGTTTTAAGCCGGCTATCATCA 57.849 40.909 33.07 9.28 0.00 3.07
781 792 4.130118 AGTTTTAAGCCGGCTATCATCAG 58.870 43.478 33.07 0.00 0.00 2.90
782 793 3.838244 TTTAAGCCGGCTATCATCAGT 57.162 42.857 33.07 14.47 0.00 3.41
783 794 3.386768 TTAAGCCGGCTATCATCAGTC 57.613 47.619 33.07 0.00 0.00 3.51
784 795 1.123077 AAGCCGGCTATCATCAGTCA 58.877 50.000 33.07 0.00 0.00 3.41
785 796 1.123077 AGCCGGCTATCATCAGTCAA 58.877 50.000 31.86 0.00 0.00 3.18
786 797 1.486310 AGCCGGCTATCATCAGTCAAA 59.514 47.619 31.86 0.00 0.00 2.69
787 798 2.105477 AGCCGGCTATCATCAGTCAAAT 59.895 45.455 31.86 0.00 0.00 2.32
788 799 3.324846 AGCCGGCTATCATCAGTCAAATA 59.675 43.478 31.86 0.00 0.00 1.40
789 800 4.065088 GCCGGCTATCATCAGTCAAATAA 58.935 43.478 22.15 0.00 0.00 1.40
790 801 4.153117 GCCGGCTATCATCAGTCAAATAAG 59.847 45.833 22.15 0.00 0.00 1.73
791 802 4.153117 CCGGCTATCATCAGTCAAATAAGC 59.847 45.833 0.00 0.00 0.00 3.09
792 803 4.751600 CGGCTATCATCAGTCAAATAAGCA 59.248 41.667 0.00 0.00 0.00 3.91
793 804 5.237127 CGGCTATCATCAGTCAAATAAGCAA 59.763 40.000 0.00 0.00 0.00 3.91
794 805 6.072838 CGGCTATCATCAGTCAAATAAGCAAT 60.073 38.462 0.00 0.00 0.00 3.56
795 806 7.521099 CGGCTATCATCAGTCAAATAAGCAATT 60.521 37.037 0.00 0.00 0.00 2.32
796 807 7.594015 GGCTATCATCAGTCAAATAAGCAATTG 59.406 37.037 0.00 0.00 0.00 2.32
797 808 8.133627 GCTATCATCAGTCAAATAAGCAATTGT 58.866 33.333 7.40 0.00 0.00 2.71
798 809 9.661187 CTATCATCAGTCAAATAAGCAATTGTC 57.339 33.333 7.40 0.00 0.00 3.18
799 810 7.451501 TCATCAGTCAAATAAGCAATTGTCA 57.548 32.000 7.40 0.00 0.00 3.58
800 811 7.307694 TCATCAGTCAAATAAGCAATTGTCAC 58.692 34.615 7.40 0.00 0.00 3.67
801 812 6.882610 TCAGTCAAATAAGCAATTGTCACT 57.117 33.333 7.40 0.00 0.00 3.41
802 813 6.902341 TCAGTCAAATAAGCAATTGTCACTC 58.098 36.000 7.40 0.00 0.00 3.51
803 814 6.072508 TCAGTCAAATAAGCAATTGTCACTCC 60.073 38.462 7.40 0.00 0.00 3.85
804 815 5.183904 AGTCAAATAAGCAATTGTCACTCCC 59.816 40.000 7.40 0.00 0.00 4.30
805 816 5.183904 GTCAAATAAGCAATTGTCACTCCCT 59.816 40.000 7.40 0.00 0.00 4.20
806 817 5.774690 TCAAATAAGCAATTGTCACTCCCTT 59.225 36.000 7.40 2.66 0.00 3.95
807 818 6.945435 TCAAATAAGCAATTGTCACTCCCTTA 59.055 34.615 7.40 4.80 0.00 2.69
808 819 7.450014 TCAAATAAGCAATTGTCACTCCCTTAA 59.550 33.333 7.40 0.00 0.00 1.85
809 820 7.775053 AATAAGCAATTGTCACTCCCTTAAA 57.225 32.000 7.40 0.00 0.00 1.52
810 821 5.453567 AAGCAATTGTCACTCCCTTAAAC 57.546 39.130 7.40 0.00 0.00 2.01
811 822 3.826729 AGCAATTGTCACTCCCTTAAACC 59.173 43.478 7.40 0.00 0.00 3.27
812 823 3.826729 GCAATTGTCACTCCCTTAAACCT 59.173 43.478 7.40 0.00 0.00 3.50
813 824 4.082733 GCAATTGTCACTCCCTTAAACCTC 60.083 45.833 7.40 0.00 0.00 3.85
814 825 5.316987 CAATTGTCACTCCCTTAAACCTCT 58.683 41.667 0.00 0.00 0.00 3.69
815 826 5.584551 ATTGTCACTCCCTTAAACCTCTT 57.415 39.130 0.00 0.00 0.00 2.85
816 827 5.382664 TTGTCACTCCCTTAAACCTCTTT 57.617 39.130 0.00 0.00 0.00 2.52
817 828 5.382664 TGTCACTCCCTTAAACCTCTTTT 57.617 39.130 0.00 0.00 0.00 2.27
818 829 6.503560 TGTCACTCCCTTAAACCTCTTTTA 57.496 37.500 0.00 0.00 0.00 1.52
819 830 7.086685 TGTCACTCCCTTAAACCTCTTTTAT 57.913 36.000 0.00 0.00 29.47 1.40
820 831 7.523415 TGTCACTCCCTTAAACCTCTTTTATT 58.477 34.615 0.00 0.00 29.47 1.40
821 832 7.664318 TGTCACTCCCTTAAACCTCTTTTATTC 59.336 37.037 0.00 0.00 29.47 1.75
822 833 7.883833 GTCACTCCCTTAAACCTCTTTTATTCT 59.116 37.037 0.00 0.00 29.47 2.40
823 834 8.101419 TCACTCCCTTAAACCTCTTTTATTCTC 58.899 37.037 0.00 0.00 29.47 2.87
824 835 7.883311 CACTCCCTTAAACCTCTTTTATTCTCA 59.117 37.037 0.00 0.00 29.47 3.27
825 836 8.103935 ACTCCCTTAAACCTCTTTTATTCTCAG 58.896 37.037 0.00 0.00 29.47 3.35
826 837 8.214721 TCCCTTAAACCTCTTTTATTCTCAGA 57.785 34.615 0.00 0.00 29.47 3.27
827 838 8.665906 TCCCTTAAACCTCTTTTATTCTCAGAA 58.334 33.333 0.00 0.00 29.47 3.02
828 839 8.951243 CCCTTAAACCTCTTTTATTCTCAGAAG 58.049 37.037 0.00 0.00 29.47 2.85
829 840 8.454894 CCTTAAACCTCTTTTATTCTCAGAAGC 58.545 37.037 0.00 0.00 29.47 3.86
830 841 6.487689 AAACCTCTTTTATTCTCAGAAGCG 57.512 37.500 0.00 0.00 0.00 4.68
831 842 4.508662 ACCTCTTTTATTCTCAGAAGCGG 58.491 43.478 0.00 0.00 31.89 5.52
832 843 4.020128 ACCTCTTTTATTCTCAGAAGCGGT 60.020 41.667 0.00 0.00 33.63 5.68
833 844 5.187186 ACCTCTTTTATTCTCAGAAGCGGTA 59.813 40.000 0.00 0.00 35.94 4.02
834 845 5.751028 CCTCTTTTATTCTCAGAAGCGGTAG 59.249 44.000 0.00 0.00 0.00 3.18
835 846 5.109903 TCTTTTATTCTCAGAAGCGGTAGC 58.890 41.667 0.00 0.00 45.58 3.58
845 856 3.550656 GCGGTAGCACACACACTC 58.449 61.111 0.00 0.00 44.35 3.51
846 857 1.300620 GCGGTAGCACACACACTCA 60.301 57.895 0.00 0.00 44.35 3.41
847 858 0.670546 GCGGTAGCACACACACTCAT 60.671 55.000 0.00 0.00 44.35 2.90
848 859 1.403647 GCGGTAGCACACACACTCATA 60.404 52.381 0.00 0.00 44.35 2.15
849 860 2.259618 CGGTAGCACACACACTCATAC 58.740 52.381 0.00 0.00 0.00 2.39
850 861 2.618053 GGTAGCACACACACTCATACC 58.382 52.381 0.00 0.00 0.00 2.73
851 862 2.259618 GTAGCACACACACTCATACCG 58.740 52.381 0.00 0.00 0.00 4.02
852 863 0.670546 AGCACACACACTCATACCGC 60.671 55.000 0.00 0.00 0.00 5.68
853 864 1.635663 GCACACACACTCATACCGCC 61.636 60.000 0.00 0.00 0.00 6.13
854 865 0.320334 CACACACACTCATACCGCCA 60.320 55.000 0.00 0.00 0.00 5.69
855 866 0.320421 ACACACACTCATACCGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
856 867 0.320334 CACACACTCATACCGCCACA 60.320 55.000 0.00 0.00 0.00 4.17
857 868 0.320421 ACACACTCATACCGCCACAC 60.320 55.000 0.00 0.00 0.00 3.82
858 869 0.320334 CACACTCATACCGCCACACA 60.320 55.000 0.00 0.00 0.00 3.72
859 870 0.320421 ACACTCATACCGCCACACAC 60.320 55.000 0.00 0.00 0.00 3.82
860 871 1.019278 CACTCATACCGCCACACACC 61.019 60.000 0.00 0.00 0.00 4.16
861 872 1.449601 CTCATACCGCCACACACCC 60.450 63.158 0.00 0.00 0.00 4.61
862 873 2.817834 CATACCGCCACACACCCG 60.818 66.667 0.00 0.00 0.00 5.28
863 874 4.770874 ATACCGCCACACACCCGC 62.771 66.667 0.00 0.00 0.00 6.13
872 883 4.710695 CACACCCGCGCGTGTCTA 62.711 66.667 25.58 0.00 45.14 2.59
873 884 3.980989 ACACCCGCGCGTGTCTAA 61.981 61.111 29.95 0.00 43.50 2.10
874 885 3.475774 CACCCGCGCGTGTCTAAC 61.476 66.667 29.95 0.00 0.00 2.34
875 886 3.980989 ACCCGCGCGTGTCTAACA 61.981 61.111 29.95 0.00 0.00 2.41
876 887 2.508439 CCCGCGCGTGTCTAACAT 60.508 61.111 29.95 0.00 0.00 2.71
877 888 2.098233 CCCGCGCGTGTCTAACATT 61.098 57.895 29.95 0.00 0.00 2.71
878 889 0.802994 CCCGCGCGTGTCTAACATTA 60.803 55.000 29.95 0.00 0.00 1.90
879 890 1.205657 CCGCGCGTGTCTAACATTAT 58.794 50.000 29.95 0.00 0.00 1.28
880 891 1.189446 CCGCGCGTGTCTAACATTATC 59.811 52.381 29.95 0.00 0.00 1.75
881 892 2.117137 CGCGCGTGTCTAACATTATCT 58.883 47.619 24.19 0.00 0.00 1.98
882 893 2.534349 CGCGCGTGTCTAACATTATCTT 59.466 45.455 24.19 0.00 0.00 2.40
883 894 3.599339 CGCGCGTGTCTAACATTATCTTG 60.599 47.826 24.19 0.00 0.00 3.02
884 895 3.302480 GCGCGTGTCTAACATTATCTTGG 60.302 47.826 8.43 0.00 0.00 3.61
885 896 3.302480 CGCGTGTCTAACATTATCTTGGC 60.302 47.826 0.00 0.00 0.00 4.52
886 897 3.621268 GCGTGTCTAACATTATCTTGGCA 59.379 43.478 0.00 0.00 0.00 4.92
887 898 4.260375 GCGTGTCTAACATTATCTTGGCAG 60.260 45.833 0.00 0.00 0.00 4.85
888 899 5.109210 CGTGTCTAACATTATCTTGGCAGA 58.891 41.667 0.00 0.00 0.00 4.26
889 900 5.005779 CGTGTCTAACATTATCTTGGCAGAC 59.994 44.000 0.00 0.00 34.59 3.51
890 901 5.294552 GTGTCTAACATTATCTTGGCAGACC 59.705 44.000 0.00 0.00 33.78 3.85
891 902 5.189736 TGTCTAACATTATCTTGGCAGACCT 59.810 40.000 0.00 0.00 33.78 3.85
892 903 6.116126 GTCTAACATTATCTTGGCAGACCTT 58.884 40.000 0.00 0.00 36.63 3.50
893 904 6.037610 GTCTAACATTATCTTGGCAGACCTTG 59.962 42.308 0.00 0.00 36.63 3.61
906 917 2.476619 CAGACCTTGCTAACTTGTGTCG 59.523 50.000 0.00 0.00 0.00 4.35
907 918 2.364324 AGACCTTGCTAACTTGTGTCGA 59.636 45.455 0.00 0.00 0.00 4.20
908 919 2.731976 GACCTTGCTAACTTGTGTCGAG 59.268 50.000 0.00 0.00 0.00 4.04
909 920 2.364324 ACCTTGCTAACTTGTGTCGAGA 59.636 45.455 0.00 0.00 0.00 4.04
910 921 3.006967 ACCTTGCTAACTTGTGTCGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
911 922 3.369147 CCTTGCTAACTTGTGTCGAGATG 59.631 47.826 0.00 0.00 0.00 2.90
912 923 3.660501 TGCTAACTTGTGTCGAGATGT 57.339 42.857 0.00 0.00 0.00 3.06
913 924 3.990092 TGCTAACTTGTGTCGAGATGTT 58.010 40.909 0.00 0.00 0.00 2.71
914 925 3.740832 TGCTAACTTGTGTCGAGATGTTG 59.259 43.478 8.17 2.36 0.00 3.33
915 926 3.987868 GCTAACTTGTGTCGAGATGTTGA 59.012 43.478 8.17 0.00 0.00 3.18
916 927 4.627467 GCTAACTTGTGTCGAGATGTTGAT 59.373 41.667 8.17 0.00 0.00 2.57
917 928 4.997905 AACTTGTGTCGAGATGTTGATG 57.002 40.909 0.00 0.00 0.00 3.07
918 929 2.738846 ACTTGTGTCGAGATGTTGATGC 59.261 45.455 0.00 0.00 0.00 3.91
919 930 2.749280 TGTGTCGAGATGTTGATGCT 57.251 45.000 0.00 0.00 0.00 3.79
920 931 3.044235 TGTGTCGAGATGTTGATGCTT 57.956 42.857 0.00 0.00 0.00 3.91
921 932 2.738314 TGTGTCGAGATGTTGATGCTTG 59.262 45.455 0.00 0.00 0.00 4.01
922 933 2.995939 GTGTCGAGATGTTGATGCTTGA 59.004 45.455 0.00 0.00 0.00 3.02
923 934 2.995939 TGTCGAGATGTTGATGCTTGAC 59.004 45.455 0.00 0.00 41.37 3.18
924 935 3.257393 GTCGAGATGTTGATGCTTGACT 58.743 45.455 0.00 0.00 39.10 3.41
925 936 4.082245 TGTCGAGATGTTGATGCTTGACTA 60.082 41.667 0.00 0.00 41.50 2.59
926 937 4.502282 GTCGAGATGTTGATGCTTGACTAG 59.498 45.833 0.00 0.00 39.10 2.57
927 938 4.399303 TCGAGATGTTGATGCTTGACTAGA 59.601 41.667 0.00 0.00 0.00 2.43
928 939 4.739228 CGAGATGTTGATGCTTGACTAGAG 59.261 45.833 0.00 0.00 0.00 2.43
929 940 5.449725 CGAGATGTTGATGCTTGACTAGAGA 60.450 44.000 0.00 0.00 0.00 3.10
930 941 5.659463 AGATGTTGATGCTTGACTAGAGAC 58.341 41.667 0.00 0.00 0.00 3.36
931 942 5.421693 AGATGTTGATGCTTGACTAGAGACT 59.578 40.000 0.00 0.00 0.00 3.24
932 943 5.474578 TGTTGATGCTTGACTAGAGACTT 57.525 39.130 0.00 0.00 0.00 3.01
933 944 5.858381 TGTTGATGCTTGACTAGAGACTTT 58.142 37.500 0.00 0.00 0.00 2.66
934 945 5.698089 TGTTGATGCTTGACTAGAGACTTTG 59.302 40.000 0.00 0.00 0.00 2.77
935 946 5.474578 TGATGCTTGACTAGAGACTTTGT 57.525 39.130 0.00 0.00 0.00 2.83
936 947 6.590234 TGATGCTTGACTAGAGACTTTGTA 57.410 37.500 0.00 0.00 0.00 2.41
937 948 6.993079 TGATGCTTGACTAGAGACTTTGTAA 58.007 36.000 0.00 0.00 0.00 2.41
938 949 7.615403 TGATGCTTGACTAGAGACTTTGTAAT 58.385 34.615 0.00 0.00 0.00 1.89
939 950 8.749354 TGATGCTTGACTAGAGACTTTGTAATA 58.251 33.333 0.00 0.00 0.00 0.98
940 951 9.757227 GATGCTTGACTAGAGACTTTGTAATAT 57.243 33.333 0.00 0.00 0.00 1.28
941 952 8.932945 TGCTTGACTAGAGACTTTGTAATATG 57.067 34.615 0.00 0.00 0.00 1.78
942 953 8.749354 TGCTTGACTAGAGACTTTGTAATATGA 58.251 33.333 0.00 0.00 0.00 2.15
943 954 9.026074 GCTTGACTAGAGACTTTGTAATATGAC 57.974 37.037 0.00 0.00 0.00 3.06
944 955 9.522804 CTTGACTAGAGACTTTGTAATATGACC 57.477 37.037 0.00 0.00 0.00 4.02
945 956 8.008513 TGACTAGAGACTTTGTAATATGACCC 57.991 38.462 0.00 0.00 0.00 4.46
965 976 2.544069 CCGCCTAACTAGCTAGCACTTC 60.544 54.545 20.91 6.74 0.00 3.01
998 1013 0.108186 CCCGAGCTGTGTCTGCATAA 60.108 55.000 0.00 0.00 0.00 1.90
999 1014 1.002366 CCGAGCTGTGTCTGCATAAC 58.998 55.000 0.00 0.00 0.00 1.89
1009 1034 2.616376 TGTCTGCATAACACAACACCAC 59.384 45.455 0.00 0.00 0.00 4.16
1015 1040 3.548014 GCATAACACAACACCACAGACAC 60.548 47.826 0.00 0.00 0.00 3.67
1453 1542 0.456221 CACTAGTCCGTCGAGGCAAT 59.544 55.000 0.00 0.00 40.77 3.56
1455 1544 0.872021 CTAGTCCGTCGAGGCAATGC 60.872 60.000 0.00 0.00 40.77 3.56
1456 1545 1.600511 TAGTCCGTCGAGGCAATGCA 61.601 55.000 7.79 0.00 40.77 3.96
1480 1571 1.289066 CCGAGCTTGAGACCAACGA 59.711 57.895 1.22 0.00 0.00 3.85
1483 1574 0.033504 GAGCTTGAGACCAACGACCA 59.966 55.000 0.00 0.00 0.00 4.02
1497 1588 1.529244 GACCAAGTGGCCAGCACTT 60.529 57.895 5.11 2.74 42.93 3.16
1556 1649 2.325484 TGCAGGGTGACTCTGTTTCTA 58.675 47.619 14.81 0.00 34.89 2.10
1557 1650 2.037251 TGCAGGGTGACTCTGTTTCTAC 59.963 50.000 14.81 0.00 34.89 2.59
1561 1654 3.515901 AGGGTGACTCTGTTTCTACCATC 59.484 47.826 0.00 0.00 0.00 3.51
1562 1655 3.260884 GGGTGACTCTGTTTCTACCATCA 59.739 47.826 0.00 0.00 0.00 3.07
1601 1728 2.415625 GCAGAGTACCACCGAACTAGTG 60.416 54.545 0.00 0.00 34.91 2.74
1612 1748 6.150318 CCACCGAACTAGTGCTATAATGTAG 58.850 44.000 0.00 0.00 33.75 2.74
1618 1754 7.167635 CGAACTAGTGCTATAATGTAGTGTTGG 59.832 40.741 0.00 0.00 0.00 3.77
1649 1785 3.449018 GGACTTCAGAGTGCTATCAAGGA 59.551 47.826 0.00 0.00 40.69 3.36
1719 1867 0.032815 TCTCAATGGTGCACGAACGA 59.967 50.000 11.45 7.06 0.00 3.85
1742 1891 6.086765 CGATTTTCATCTTGCACTGTTGTAAC 59.913 38.462 0.00 0.00 0.00 2.50
1749 1898 6.126568 TCTTGCACTGTTGTAACTAAAACC 57.873 37.500 0.00 0.00 0.00 3.27
1750 1899 5.648526 TCTTGCACTGTTGTAACTAAAACCA 59.351 36.000 0.00 0.00 0.00 3.67
1789 1938 0.782384 CAACCTCTCGAACGAAACGG 59.218 55.000 0.00 2.18 0.00 4.44
1793 1942 0.937699 CTCTCGAACGAAACGGTGCA 60.938 55.000 0.00 0.00 0.00 4.57
1818 1967 5.342866 ACCACTTCTCCTTGAGTTAGGTAT 58.657 41.667 0.00 0.00 36.63 2.73
1819 1968 6.500336 ACCACTTCTCCTTGAGTTAGGTATA 58.500 40.000 0.00 0.00 36.63 1.47
1820 1969 6.958192 ACCACTTCTCCTTGAGTTAGGTATAA 59.042 38.462 0.00 0.00 36.63 0.98
1821 1970 7.456902 ACCACTTCTCCTTGAGTTAGGTATAAA 59.543 37.037 0.00 0.00 36.63 1.40
1834 1983 0.835276 GTATAAACAGGGCCGGTCCT 59.165 55.000 25.80 25.80 37.71 3.85
1866 2015 1.449070 CCCGGGGCGAAACTAGAAC 60.449 63.158 14.71 0.00 0.00 3.01
1869 2018 1.449070 GGGGCGAAACTAGAACCCG 60.449 63.158 0.00 0.00 41.83 5.28
1883 2033 1.703513 GAACCCGGGGCCTCTTAATAT 59.296 52.381 27.92 0.00 0.00 1.28
1886 2036 2.844348 ACCCGGGGCCTCTTAATATATG 59.156 50.000 27.92 0.00 0.00 1.78
1970 2120 6.916387 GTCTCATCAAGCAATTATCAATGGTG 59.084 38.462 0.00 0.00 0.00 4.17
1978 2128 8.533965 CAAGCAATTATCAATGGTGAAATTACG 58.466 33.333 0.00 0.00 37.30 3.18
1985 2135 7.867445 ATCAATGGTGAAATTACGACAAAAC 57.133 32.000 0.00 0.00 37.30 2.43
1986 2136 6.796426 TCAATGGTGAAATTACGACAAAACA 58.204 32.000 0.00 0.00 0.00 2.83
1998 2148 4.769215 ACGACAAAACAAAGAAGCGATAC 58.231 39.130 0.00 0.00 0.00 2.24
2008 2158 5.521735 ACAAAGAAGCGATACTGATCATCAC 59.478 40.000 0.00 0.00 31.78 3.06
2078 2228 0.889994 TCATGAAGGCAAAAGCGCAT 59.110 45.000 11.47 0.00 0.00 4.73
2087 2237 1.928503 GCAAAAGCGCATGCATATGTT 59.071 42.857 22.61 0.69 46.23 2.71
2088 2238 3.114809 GCAAAAGCGCATGCATATGTTA 58.885 40.909 22.61 0.00 46.23 2.41
2099 2249 5.863935 GCATGCATATGTTATGAGAGTCGTA 59.136 40.000 14.21 0.00 36.65 3.43
2111 2261 4.193090 TGAGAGTCGTACCTTCTCAGATC 58.807 47.826 12.20 0.00 41.62 2.75
2112 2262 4.080807 TGAGAGTCGTACCTTCTCAGATCT 60.081 45.833 12.20 0.00 41.62 2.75
2113 2263 4.448210 AGAGTCGTACCTTCTCAGATCTC 58.552 47.826 0.00 0.00 0.00 2.75
2120 2270 5.536916 CGTACCTTCTCAGATCTCCCTAATT 59.463 44.000 0.00 0.00 0.00 1.40
2122 2272 4.657969 ACCTTCTCAGATCTCCCTAATTGG 59.342 45.833 0.00 0.00 0.00 3.16
2164 2314 2.113860 TCAAGCGGAAGGATCAAAGG 57.886 50.000 0.00 0.00 0.00 3.11
2193 2343 6.766467 ACCCCGACTCATAAATCTGAATAAAC 59.234 38.462 0.00 0.00 0.00 2.01
2270 2420 9.809096 TGCAACAACAAAGAAGTAAATATTGAA 57.191 25.926 0.00 0.00 0.00 2.69
2342 4361 9.729023 GTGCATATGCTATTAGAGTCATACTAG 57.271 37.037 27.13 0.00 42.66 2.57
2405 4460 1.810853 CGTGATGCTGATGCGGTCA 60.811 57.895 0.00 0.00 43.34 4.02
2414 4470 2.362503 ATGCGGTCACTCTCGGGA 60.363 61.111 0.00 0.00 0.00 5.14
2442 4498 2.754472 CCGACAAATCTGCGATGGATA 58.246 47.619 0.00 0.00 0.00 2.59
2513 4569 5.480073 TCGGTGAATCCCAGAAAAATGAATT 59.520 36.000 0.00 0.00 0.00 2.17
2517 4573 5.012871 TGAATCCCAGAAAAATGAATTGGCA 59.987 36.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.087323 ACATGACCAACTAGAAAGAGGAGA 58.913 41.667 0.00 0.00 0.00 3.71
221 222 4.221262 ACAATCAAACACATAGCAGGCAAT 59.779 37.500 0.00 0.00 0.00 3.56
636 647 0.972471 CCCATTCTTCAACAGGGCCC 60.972 60.000 16.46 16.46 31.81 5.80
656 667 6.814644 TGCTTCATCATCAATGGAAATTGTTC 59.185 34.615 0.00 0.00 35.94 3.18
657 668 6.703319 TGCTTCATCATCAATGGAAATTGTT 58.297 32.000 0.00 0.00 35.94 2.83
658 669 6.288941 TGCTTCATCATCAATGGAAATTGT 57.711 33.333 0.00 0.00 35.94 2.71
659 670 7.603963 TTTGCTTCATCATCAATGGAAATTG 57.396 32.000 0.00 0.00 35.94 2.32
660 671 9.321562 GTATTTGCTTCATCATCAATGGAAATT 57.678 29.630 0.00 0.00 35.94 1.82
661 672 8.479689 TGTATTTGCTTCATCATCAATGGAAAT 58.520 29.630 0.00 0.00 35.94 2.17
662 673 7.838884 TGTATTTGCTTCATCATCAATGGAAA 58.161 30.769 0.00 0.00 35.94 3.13
663 674 7.407393 TGTATTTGCTTCATCATCAATGGAA 57.593 32.000 0.00 0.00 35.94 3.53
664 675 7.407393 TTGTATTTGCTTCATCATCAATGGA 57.593 32.000 0.00 0.00 35.94 3.41
665 676 8.481974 TTTTGTATTTGCTTCATCATCAATGG 57.518 30.769 0.00 0.00 35.94 3.16
666 677 8.600625 CCTTTTGTATTTGCTTCATCATCAATG 58.399 33.333 0.00 0.00 36.65 2.82
667 678 7.767198 CCCTTTTGTATTTGCTTCATCATCAAT 59.233 33.333 0.00 0.00 0.00 2.57
668 679 7.039152 TCCCTTTTGTATTTGCTTCATCATCAA 60.039 33.333 0.00 0.00 0.00 2.57
669 680 6.436847 TCCCTTTTGTATTTGCTTCATCATCA 59.563 34.615 0.00 0.00 0.00 3.07
670 681 6.866480 TCCCTTTTGTATTTGCTTCATCATC 58.134 36.000 0.00 0.00 0.00 2.92
671 682 6.855763 TCCCTTTTGTATTTGCTTCATCAT 57.144 33.333 0.00 0.00 0.00 2.45
672 683 6.632909 CATCCCTTTTGTATTTGCTTCATCA 58.367 36.000 0.00 0.00 0.00 3.07
673 684 5.521372 GCATCCCTTTTGTATTTGCTTCATC 59.479 40.000 0.00 0.00 0.00 2.92
674 685 5.422145 GCATCCCTTTTGTATTTGCTTCAT 58.578 37.500 0.00 0.00 0.00 2.57
675 686 4.617995 CGCATCCCTTTTGTATTTGCTTCA 60.618 41.667 0.00 0.00 0.00 3.02
676 687 3.859386 CGCATCCCTTTTGTATTTGCTTC 59.141 43.478 0.00 0.00 0.00 3.86
677 688 3.848726 CGCATCCCTTTTGTATTTGCTT 58.151 40.909 0.00 0.00 0.00 3.91
678 689 2.417243 GCGCATCCCTTTTGTATTTGCT 60.417 45.455 0.30 0.00 0.00 3.91
679 690 1.926510 GCGCATCCCTTTTGTATTTGC 59.073 47.619 0.30 0.00 0.00 3.68
680 691 2.184448 CGCGCATCCCTTTTGTATTTG 58.816 47.619 8.75 0.00 0.00 2.32
681 692 1.816224 ACGCGCATCCCTTTTGTATTT 59.184 42.857 5.73 0.00 0.00 1.40
682 693 1.459450 ACGCGCATCCCTTTTGTATT 58.541 45.000 5.73 0.00 0.00 1.89
683 694 2.159014 TCTACGCGCATCCCTTTTGTAT 60.159 45.455 5.73 0.00 0.00 2.29
684 695 1.205179 TCTACGCGCATCCCTTTTGTA 59.795 47.619 5.73 0.00 0.00 2.41
685 696 0.036765 TCTACGCGCATCCCTTTTGT 60.037 50.000 5.73 0.00 0.00 2.83
686 697 1.003545 CATCTACGCGCATCCCTTTTG 60.004 52.381 5.73 0.00 0.00 2.44
687 698 1.299541 CATCTACGCGCATCCCTTTT 58.700 50.000 5.73 0.00 0.00 2.27
688 699 0.178068 ACATCTACGCGCATCCCTTT 59.822 50.000 5.73 0.00 0.00 3.11
689 700 0.178068 AACATCTACGCGCATCCCTT 59.822 50.000 5.73 0.00 0.00 3.95
690 701 0.530650 CAACATCTACGCGCATCCCT 60.531 55.000 5.73 0.00 0.00 4.20
691 702 0.529773 TCAACATCTACGCGCATCCC 60.530 55.000 5.73 0.00 0.00 3.85
692 703 1.457303 GATCAACATCTACGCGCATCC 59.543 52.381 5.73 0.00 0.00 3.51
693 704 2.127251 TGATCAACATCTACGCGCATC 58.873 47.619 5.73 0.00 0.00 3.91
694 705 2.223537 TGATCAACATCTACGCGCAT 57.776 45.000 5.73 0.00 0.00 4.73
695 706 2.003196 TTGATCAACATCTACGCGCA 57.997 45.000 5.73 0.00 0.00 6.09
696 707 2.539688 TCATTGATCAACATCTACGCGC 59.460 45.455 11.07 0.00 0.00 6.86
697 708 4.445385 TGATCATTGATCAACATCTACGCG 59.555 41.667 23.72 3.53 44.70 6.01
698 709 5.693555 TCTGATCATTGATCAACATCTACGC 59.306 40.000 25.29 0.00 46.51 4.42
699 710 6.129247 CGTCTGATCATTGATCAACATCTACG 60.129 42.308 25.29 24.09 46.51 3.51
700 711 6.145209 CCGTCTGATCATTGATCAACATCTAC 59.855 42.308 25.29 18.57 46.51 2.59
701 712 6.218746 CCGTCTGATCATTGATCAACATCTA 58.781 40.000 25.29 12.29 46.51 1.98
702 713 5.055144 CCGTCTGATCATTGATCAACATCT 58.945 41.667 25.29 2.84 46.51 2.90
703 714 4.212847 CCCGTCTGATCATTGATCAACATC 59.787 45.833 25.29 14.98 46.51 3.06
704 715 4.132336 CCCGTCTGATCATTGATCAACAT 58.868 43.478 25.29 5.84 46.51 2.71
705 716 3.055167 ACCCGTCTGATCATTGATCAACA 60.055 43.478 25.29 14.81 46.51 3.33
706 717 3.535561 ACCCGTCTGATCATTGATCAAC 58.464 45.455 25.29 22.43 46.51 3.18
707 718 3.912496 ACCCGTCTGATCATTGATCAA 57.088 42.857 25.29 11.26 46.51 2.57
708 719 4.321230 CGATACCCGTCTGATCATTGATCA 60.321 45.833 24.16 24.16 45.35 2.92
709 720 4.169508 CGATACCCGTCTGATCATTGATC 58.830 47.826 17.97 17.97 39.31 2.92
710 721 4.179926 CGATACCCGTCTGATCATTGAT 57.820 45.455 0.00 0.00 0.00 2.57
711 722 3.643159 CGATACCCGTCTGATCATTGA 57.357 47.619 0.00 0.00 0.00 2.57
723 734 3.552541 CTTACTTGATCGACGATACCCG 58.447 50.000 10.97 2.62 45.44 5.28
724 735 3.567164 TCCTTACTTGATCGACGATACCC 59.433 47.826 10.97 0.00 0.00 3.69
725 736 4.825546 TCCTTACTTGATCGACGATACC 57.174 45.455 10.97 0.00 0.00 2.73
726 737 8.074972 AGTTATTCCTTACTTGATCGACGATAC 58.925 37.037 10.97 5.42 0.00 2.24
727 738 8.162878 AGTTATTCCTTACTTGATCGACGATA 57.837 34.615 10.97 0.00 0.00 2.92
728 739 7.040473 AGTTATTCCTTACTTGATCGACGAT 57.960 36.000 10.78 10.78 0.00 3.73
729 740 6.446781 AGTTATTCCTTACTTGATCGACGA 57.553 37.500 0.00 0.00 0.00 4.20
730 741 7.416022 AGTAGTTATTCCTTACTTGATCGACG 58.584 38.462 0.00 0.00 0.00 5.12
731 742 9.662545 GTAGTAGTTATTCCTTACTTGATCGAC 57.337 37.037 0.00 0.00 0.00 4.20
732 743 9.624373 AGTAGTAGTTATTCCTTACTTGATCGA 57.376 33.333 0.00 0.00 0.00 3.59
744 755 9.242477 CGGCTTAAAACTAGTAGTAGTTATTCC 57.758 37.037 20.71 15.75 46.88 3.01
745 756 9.242477 CCGGCTTAAAACTAGTAGTAGTTATTC 57.758 37.037 20.71 10.10 46.88 1.75
746 757 7.708322 GCCGGCTTAAAACTAGTAGTAGTTATT 59.292 37.037 22.15 17.73 46.88 1.40
747 758 7.069208 AGCCGGCTTAAAACTAGTAGTAGTTAT 59.931 37.037 27.08 10.23 46.88 1.89
748 759 6.378280 AGCCGGCTTAAAACTAGTAGTAGTTA 59.622 38.462 27.08 6.19 46.88 2.24
750 761 4.708909 AGCCGGCTTAAAACTAGTAGTAGT 59.291 41.667 27.08 4.29 41.61 2.73
751 762 5.259832 AGCCGGCTTAAAACTAGTAGTAG 57.740 43.478 27.08 2.87 0.00 2.57
752 763 6.547141 TGATAGCCGGCTTAAAACTAGTAGTA 59.453 38.462 37.74 11.84 0.00 1.82
753 764 5.361857 TGATAGCCGGCTTAAAACTAGTAGT 59.638 40.000 37.74 7.37 0.00 2.73
754 765 5.839621 TGATAGCCGGCTTAAAACTAGTAG 58.160 41.667 37.74 0.00 0.00 2.57
755 766 5.857471 TGATAGCCGGCTTAAAACTAGTA 57.143 39.130 37.74 13.25 0.00 1.82
756 767 4.748277 TGATAGCCGGCTTAAAACTAGT 57.252 40.909 37.74 8.78 0.00 2.57
757 768 5.297547 TGATGATAGCCGGCTTAAAACTAG 58.702 41.667 37.74 0.00 0.00 2.57
758 769 5.163343 ACTGATGATAGCCGGCTTAAAACTA 60.163 40.000 37.74 15.94 0.00 2.24
759 770 4.130118 CTGATGATAGCCGGCTTAAAACT 58.870 43.478 37.74 14.98 0.00 2.66
760 771 3.877508 ACTGATGATAGCCGGCTTAAAAC 59.122 43.478 37.74 22.74 0.00 2.43
761 772 4.127171 GACTGATGATAGCCGGCTTAAAA 58.873 43.478 37.74 18.22 0.00 1.52
762 773 3.133901 TGACTGATGATAGCCGGCTTAAA 59.866 43.478 37.74 18.67 0.00 1.52
763 774 2.698274 TGACTGATGATAGCCGGCTTAA 59.302 45.455 37.74 19.59 0.00 1.85
764 775 2.316108 TGACTGATGATAGCCGGCTTA 58.684 47.619 37.74 21.89 0.00 3.09
765 776 1.123077 TGACTGATGATAGCCGGCTT 58.877 50.000 37.74 22.46 0.00 4.35
766 777 1.123077 TTGACTGATGATAGCCGGCT 58.877 50.000 34.85 34.85 0.00 5.52
767 778 1.953559 TTTGACTGATGATAGCCGGC 58.046 50.000 21.89 21.89 0.00 6.13
768 779 4.153117 GCTTATTTGACTGATGATAGCCGG 59.847 45.833 0.00 0.00 0.00 6.13
769 780 4.751600 TGCTTATTTGACTGATGATAGCCG 59.248 41.667 0.00 0.00 0.00 5.52
770 781 6.624352 TTGCTTATTTGACTGATGATAGCC 57.376 37.500 0.00 0.00 0.00 3.93
771 782 8.133627 ACAATTGCTTATTTGACTGATGATAGC 58.866 33.333 5.05 0.00 0.00 2.97
772 783 9.661187 GACAATTGCTTATTTGACTGATGATAG 57.339 33.333 5.05 0.00 0.00 2.08
773 784 9.176460 TGACAATTGCTTATTTGACTGATGATA 57.824 29.630 5.05 0.00 0.00 2.15
774 785 7.972277 GTGACAATTGCTTATTTGACTGATGAT 59.028 33.333 5.05 0.00 0.00 2.45
775 786 7.175467 AGTGACAATTGCTTATTTGACTGATGA 59.825 33.333 5.05 0.00 0.00 2.92
776 787 7.310664 AGTGACAATTGCTTATTTGACTGATG 58.689 34.615 5.05 0.00 0.00 3.07
777 788 7.362401 GGAGTGACAATTGCTTATTTGACTGAT 60.362 37.037 5.05 0.00 0.00 2.90
778 789 6.072508 GGAGTGACAATTGCTTATTTGACTGA 60.073 38.462 5.05 0.00 0.00 3.41
779 790 6.088824 GGAGTGACAATTGCTTATTTGACTG 58.911 40.000 5.05 0.00 0.00 3.51
780 791 5.183904 GGGAGTGACAATTGCTTATTTGACT 59.816 40.000 5.05 0.00 0.00 3.41
781 792 5.183904 AGGGAGTGACAATTGCTTATTTGAC 59.816 40.000 5.05 0.00 0.00 3.18
782 793 5.324409 AGGGAGTGACAATTGCTTATTTGA 58.676 37.500 5.05 0.00 0.00 2.69
783 794 5.649782 AGGGAGTGACAATTGCTTATTTG 57.350 39.130 5.05 0.00 0.00 2.32
784 795 7.775053 TTAAGGGAGTGACAATTGCTTATTT 57.225 32.000 5.05 0.00 0.00 1.40
785 796 7.309805 GGTTTAAGGGAGTGACAATTGCTTATT 60.310 37.037 5.05 0.00 0.00 1.40
786 797 6.152831 GGTTTAAGGGAGTGACAATTGCTTAT 59.847 38.462 5.05 0.00 0.00 1.73
787 798 5.475564 GGTTTAAGGGAGTGACAATTGCTTA 59.524 40.000 5.05 0.57 0.00 3.09
788 799 4.280929 GGTTTAAGGGAGTGACAATTGCTT 59.719 41.667 5.05 1.55 0.00 3.91
789 800 3.826729 GGTTTAAGGGAGTGACAATTGCT 59.173 43.478 5.05 0.00 0.00 3.91
790 801 3.826729 AGGTTTAAGGGAGTGACAATTGC 59.173 43.478 5.05 0.00 0.00 3.56
791 802 5.316987 AGAGGTTTAAGGGAGTGACAATTG 58.683 41.667 3.24 3.24 0.00 2.32
792 803 5.584551 AGAGGTTTAAGGGAGTGACAATT 57.415 39.130 0.00 0.00 0.00 2.32
793 804 5.584551 AAGAGGTTTAAGGGAGTGACAAT 57.415 39.130 0.00 0.00 0.00 2.71
794 805 5.382664 AAAGAGGTTTAAGGGAGTGACAA 57.617 39.130 0.00 0.00 0.00 3.18
795 806 5.382664 AAAAGAGGTTTAAGGGAGTGACA 57.617 39.130 0.00 0.00 0.00 3.58
796 807 7.883833 AGAATAAAAGAGGTTTAAGGGAGTGAC 59.116 37.037 0.00 0.00 35.33 3.67
797 808 7.985589 AGAATAAAAGAGGTTTAAGGGAGTGA 58.014 34.615 0.00 0.00 35.33 3.41
798 809 7.883311 TGAGAATAAAAGAGGTTTAAGGGAGTG 59.117 37.037 0.00 0.00 35.33 3.51
799 810 7.985589 TGAGAATAAAAGAGGTTTAAGGGAGT 58.014 34.615 0.00 0.00 35.33 3.85
800 811 8.322091 TCTGAGAATAAAAGAGGTTTAAGGGAG 58.678 37.037 0.00 0.00 35.33 4.30
801 812 8.214721 TCTGAGAATAAAAGAGGTTTAAGGGA 57.785 34.615 0.00 0.00 35.33 4.20
802 813 8.863872 TTCTGAGAATAAAAGAGGTTTAAGGG 57.136 34.615 0.00 0.00 35.33 3.95
803 814 8.454894 GCTTCTGAGAATAAAAGAGGTTTAAGG 58.545 37.037 0.00 0.00 35.33 2.69
804 815 8.171840 CGCTTCTGAGAATAAAAGAGGTTTAAG 58.828 37.037 0.00 0.00 35.33 1.85
805 816 7.119262 CCGCTTCTGAGAATAAAAGAGGTTTAA 59.881 37.037 0.00 0.00 35.33 1.52
806 817 6.594159 CCGCTTCTGAGAATAAAAGAGGTTTA 59.406 38.462 0.00 0.00 34.96 2.01
807 818 5.412904 CCGCTTCTGAGAATAAAAGAGGTTT 59.587 40.000 0.00 0.00 34.96 3.27
808 819 4.938226 CCGCTTCTGAGAATAAAAGAGGTT 59.062 41.667 0.00 0.00 34.96 3.50
809 820 4.020128 ACCGCTTCTGAGAATAAAAGAGGT 60.020 41.667 0.00 0.00 44.01 3.85
810 821 4.508662 ACCGCTTCTGAGAATAAAAGAGG 58.491 43.478 0.00 0.00 42.34 3.69
811 822 5.233263 GCTACCGCTTCTGAGAATAAAAGAG 59.767 44.000 0.00 0.00 0.00 2.85
812 823 5.109903 GCTACCGCTTCTGAGAATAAAAGA 58.890 41.667 0.00 0.00 0.00 2.52
813 824 4.870426 TGCTACCGCTTCTGAGAATAAAAG 59.130 41.667 0.00 0.00 36.97 2.27
814 825 4.630069 GTGCTACCGCTTCTGAGAATAAAA 59.370 41.667 0.00 0.00 36.97 1.52
815 826 4.181578 GTGCTACCGCTTCTGAGAATAAA 58.818 43.478 0.00 0.00 36.97 1.40
816 827 3.194755 TGTGCTACCGCTTCTGAGAATAA 59.805 43.478 0.00 0.00 36.97 1.40
817 828 2.758423 TGTGCTACCGCTTCTGAGAATA 59.242 45.455 0.00 0.00 36.97 1.75
818 829 1.550524 TGTGCTACCGCTTCTGAGAAT 59.449 47.619 0.00 0.00 36.97 2.40
819 830 0.966179 TGTGCTACCGCTTCTGAGAA 59.034 50.000 0.00 0.00 36.97 2.87
820 831 0.243907 GTGTGCTACCGCTTCTGAGA 59.756 55.000 0.00 0.00 36.97 3.27
821 832 0.038251 TGTGTGCTACCGCTTCTGAG 60.038 55.000 0.00 0.00 36.97 3.35
822 833 0.319555 GTGTGTGCTACCGCTTCTGA 60.320 55.000 0.00 0.00 36.97 3.27
823 834 0.599991 TGTGTGTGCTACCGCTTCTG 60.600 55.000 0.00 0.00 36.97 3.02
824 835 0.600255 GTGTGTGTGCTACCGCTTCT 60.600 55.000 0.00 0.00 36.97 2.85
825 836 0.600255 AGTGTGTGTGCTACCGCTTC 60.600 55.000 0.00 0.00 36.97 3.86
826 837 0.600255 GAGTGTGTGTGCTACCGCTT 60.600 55.000 0.00 0.00 36.97 4.68
827 838 1.006102 GAGTGTGTGTGCTACCGCT 60.006 57.895 0.00 0.00 36.97 5.52
828 839 0.670546 ATGAGTGTGTGTGCTACCGC 60.671 55.000 0.00 0.00 0.00 5.68
829 840 2.259618 GTATGAGTGTGTGTGCTACCG 58.740 52.381 0.00 0.00 0.00 4.02
830 841 2.618053 GGTATGAGTGTGTGTGCTACC 58.382 52.381 0.00 0.00 0.00 3.18
831 842 2.259618 CGGTATGAGTGTGTGTGCTAC 58.740 52.381 0.00 0.00 0.00 3.58
832 843 1.403647 GCGGTATGAGTGTGTGTGCTA 60.404 52.381 0.00 0.00 0.00 3.49
833 844 0.670546 GCGGTATGAGTGTGTGTGCT 60.671 55.000 0.00 0.00 0.00 4.40
834 845 1.635663 GGCGGTATGAGTGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
835 846 0.320334 TGGCGGTATGAGTGTGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
836 847 0.320421 GTGGCGGTATGAGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
837 848 0.320334 TGTGGCGGTATGAGTGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
838 849 0.320421 GTGTGGCGGTATGAGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
839 850 0.320334 TGTGTGGCGGTATGAGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
840 851 0.320421 GTGTGTGGCGGTATGAGTGT 60.320 55.000 0.00 0.00 0.00 3.55
841 852 1.019278 GGTGTGTGGCGGTATGAGTG 61.019 60.000 0.00 0.00 0.00 3.51
842 853 1.295423 GGTGTGTGGCGGTATGAGT 59.705 57.895 0.00 0.00 0.00 3.41
843 854 1.449601 GGGTGTGTGGCGGTATGAG 60.450 63.158 0.00 0.00 0.00 2.90
844 855 2.666207 GGGTGTGTGGCGGTATGA 59.334 61.111 0.00 0.00 0.00 2.15
845 856 2.817834 CGGGTGTGTGGCGGTATG 60.818 66.667 0.00 0.00 0.00 2.39
846 857 4.770874 GCGGGTGTGTGGCGGTAT 62.771 66.667 0.00 0.00 0.00 2.73
857 868 3.475774 GTTAGACACGCGCGGGTG 61.476 66.667 42.89 42.89 43.54 4.61
858 869 2.775032 AATGTTAGACACGCGCGGGT 62.775 55.000 41.11 41.11 0.00 5.28
859 870 0.802994 TAATGTTAGACACGCGCGGG 60.803 55.000 33.55 33.55 0.00 6.13
860 871 1.189446 GATAATGTTAGACACGCGCGG 59.811 52.381 35.22 24.36 0.00 6.46
861 872 2.117137 AGATAATGTTAGACACGCGCG 58.883 47.619 30.96 30.96 0.00 6.86
862 873 3.302480 CCAAGATAATGTTAGACACGCGC 60.302 47.826 5.73 0.00 0.00 6.86
863 874 3.302480 GCCAAGATAATGTTAGACACGCG 60.302 47.826 3.53 3.53 0.00 6.01
864 875 3.621268 TGCCAAGATAATGTTAGACACGC 59.379 43.478 0.00 0.00 0.00 5.34
865 876 5.005779 GTCTGCCAAGATAATGTTAGACACG 59.994 44.000 0.00 0.00 34.31 4.49
866 877 5.294552 GGTCTGCCAAGATAATGTTAGACAC 59.705 44.000 0.00 0.00 35.11 3.67
867 878 5.189736 AGGTCTGCCAAGATAATGTTAGACA 59.810 40.000 0.00 0.00 35.11 3.41
868 879 5.675538 AGGTCTGCCAAGATAATGTTAGAC 58.324 41.667 0.00 0.00 37.19 2.59
869 880 5.957771 AGGTCTGCCAAGATAATGTTAGA 57.042 39.130 0.00 0.00 37.19 2.10
870 881 5.220931 GCAAGGTCTGCCAAGATAATGTTAG 60.221 44.000 0.00 0.00 46.13 2.34
871 882 4.640201 GCAAGGTCTGCCAAGATAATGTTA 59.360 41.667 0.00 0.00 46.13 2.41
872 883 3.445096 GCAAGGTCTGCCAAGATAATGTT 59.555 43.478 0.00 0.00 46.13 2.71
873 884 3.019564 GCAAGGTCTGCCAAGATAATGT 58.980 45.455 0.00 0.00 46.13 2.71
874 885 3.705043 GCAAGGTCTGCCAAGATAATG 57.295 47.619 0.00 0.00 46.13 1.90
885 896 2.476619 CGACACAAGTTAGCAAGGTCTG 59.523 50.000 0.00 0.00 0.00 3.51
886 897 2.364324 TCGACACAAGTTAGCAAGGTCT 59.636 45.455 0.00 0.00 0.00 3.85
887 898 2.731976 CTCGACACAAGTTAGCAAGGTC 59.268 50.000 0.00 0.00 0.00 3.85
888 899 2.364324 TCTCGACACAAGTTAGCAAGGT 59.636 45.455 0.00 0.00 0.00 3.50
889 900 3.026630 TCTCGACACAAGTTAGCAAGG 57.973 47.619 0.00 0.00 0.00 3.61
890 901 3.990469 ACATCTCGACACAAGTTAGCAAG 59.010 43.478 0.00 0.00 0.00 4.01
891 902 3.990092 ACATCTCGACACAAGTTAGCAA 58.010 40.909 0.00 0.00 0.00 3.91
892 903 3.660501 ACATCTCGACACAAGTTAGCA 57.339 42.857 0.00 0.00 0.00 3.49
893 904 3.987868 TCAACATCTCGACACAAGTTAGC 59.012 43.478 0.00 0.00 0.00 3.09
894 905 5.445142 GCATCAACATCTCGACACAAGTTAG 60.445 44.000 0.00 0.00 0.00 2.34
895 906 4.388773 GCATCAACATCTCGACACAAGTTA 59.611 41.667 0.00 0.00 0.00 2.24
896 907 3.187227 GCATCAACATCTCGACACAAGTT 59.813 43.478 0.00 0.00 0.00 2.66
897 908 2.738846 GCATCAACATCTCGACACAAGT 59.261 45.455 0.00 0.00 0.00 3.16
898 909 2.998670 AGCATCAACATCTCGACACAAG 59.001 45.455 0.00 0.00 0.00 3.16
899 910 3.044235 AGCATCAACATCTCGACACAA 57.956 42.857 0.00 0.00 0.00 3.33
900 911 2.738314 CAAGCATCAACATCTCGACACA 59.262 45.455 0.00 0.00 0.00 3.72
901 912 2.995939 TCAAGCATCAACATCTCGACAC 59.004 45.455 0.00 0.00 0.00 3.67
902 913 2.995939 GTCAAGCATCAACATCTCGACA 59.004 45.455 0.00 0.00 0.00 4.35
903 914 3.257393 AGTCAAGCATCAACATCTCGAC 58.743 45.455 0.00 0.00 0.00 4.20
904 915 3.599730 AGTCAAGCATCAACATCTCGA 57.400 42.857 0.00 0.00 0.00 4.04
905 916 4.676546 TCTAGTCAAGCATCAACATCTCG 58.323 43.478 0.00 0.00 0.00 4.04
906 917 5.748152 GTCTCTAGTCAAGCATCAACATCTC 59.252 44.000 0.00 0.00 0.00 2.75
907 918 5.421693 AGTCTCTAGTCAAGCATCAACATCT 59.578 40.000 0.00 0.00 0.00 2.90
908 919 5.659463 AGTCTCTAGTCAAGCATCAACATC 58.341 41.667 0.00 0.00 0.00 3.06
909 920 5.674052 AGTCTCTAGTCAAGCATCAACAT 57.326 39.130 0.00 0.00 0.00 2.71
910 921 5.474578 AAGTCTCTAGTCAAGCATCAACA 57.525 39.130 0.00 0.00 0.00 3.33
911 922 5.698545 ACAAAGTCTCTAGTCAAGCATCAAC 59.301 40.000 0.00 0.00 0.00 3.18
912 923 5.858381 ACAAAGTCTCTAGTCAAGCATCAA 58.142 37.500 0.00 0.00 0.00 2.57
913 924 5.474578 ACAAAGTCTCTAGTCAAGCATCA 57.525 39.130 0.00 0.00 0.00 3.07
914 925 9.757227 ATATTACAAAGTCTCTAGTCAAGCATC 57.243 33.333 0.00 0.00 0.00 3.91
915 926 9.539825 CATATTACAAAGTCTCTAGTCAAGCAT 57.460 33.333 0.00 0.00 0.00 3.79
916 927 8.749354 TCATATTACAAAGTCTCTAGTCAAGCA 58.251 33.333 0.00 0.00 0.00 3.91
917 928 9.026074 GTCATATTACAAAGTCTCTAGTCAAGC 57.974 37.037 0.00 0.00 0.00 4.01
918 929 9.522804 GGTCATATTACAAAGTCTCTAGTCAAG 57.477 37.037 0.00 0.00 0.00 3.02
919 930 8.475639 GGGTCATATTACAAAGTCTCTAGTCAA 58.524 37.037 0.00 0.00 0.00 3.18
920 931 7.201794 CGGGTCATATTACAAAGTCTCTAGTCA 60.202 40.741 0.00 0.00 0.00 3.41
921 932 7.140048 CGGGTCATATTACAAAGTCTCTAGTC 58.860 42.308 0.00 0.00 0.00 2.59
922 933 6.461231 GCGGGTCATATTACAAAGTCTCTAGT 60.461 42.308 0.00 0.00 0.00 2.57
923 934 5.921408 GCGGGTCATATTACAAAGTCTCTAG 59.079 44.000 0.00 0.00 0.00 2.43
924 935 5.221382 GGCGGGTCATATTACAAAGTCTCTA 60.221 44.000 0.00 0.00 0.00 2.43
925 936 4.443034 GGCGGGTCATATTACAAAGTCTCT 60.443 45.833 0.00 0.00 0.00 3.10
926 937 3.808174 GGCGGGTCATATTACAAAGTCTC 59.192 47.826 0.00 0.00 0.00 3.36
927 938 3.454812 AGGCGGGTCATATTACAAAGTCT 59.545 43.478 0.00 0.00 0.00 3.24
928 939 3.805207 AGGCGGGTCATATTACAAAGTC 58.195 45.455 0.00 0.00 0.00 3.01
929 940 3.926058 AGGCGGGTCATATTACAAAGT 57.074 42.857 0.00 0.00 0.00 2.66
930 941 5.365619 AGTTAGGCGGGTCATATTACAAAG 58.634 41.667 0.00 0.00 0.00 2.77
931 942 5.362105 AGTTAGGCGGGTCATATTACAAA 57.638 39.130 0.00 0.00 0.00 2.83
932 943 5.510179 GCTAGTTAGGCGGGTCATATTACAA 60.510 44.000 0.00 0.00 0.00 2.41
933 944 4.021719 GCTAGTTAGGCGGGTCATATTACA 60.022 45.833 0.00 0.00 0.00 2.41
934 945 4.220163 AGCTAGTTAGGCGGGTCATATTAC 59.780 45.833 0.00 0.00 34.52 1.89
935 946 4.413760 AGCTAGTTAGGCGGGTCATATTA 58.586 43.478 0.00 0.00 34.52 0.98
936 947 3.240302 AGCTAGTTAGGCGGGTCATATT 58.760 45.455 0.00 0.00 34.52 1.28
937 948 2.890814 AGCTAGTTAGGCGGGTCATAT 58.109 47.619 0.00 0.00 34.52 1.78
938 949 2.376695 AGCTAGTTAGGCGGGTCATA 57.623 50.000 0.00 0.00 34.52 2.15
939 950 2.240279 CTAGCTAGTTAGGCGGGTCAT 58.760 52.381 12.92 0.00 34.52 3.06
940 951 1.688772 CTAGCTAGTTAGGCGGGTCA 58.311 55.000 12.92 0.00 34.52 4.02
941 952 0.314618 GCTAGCTAGTTAGGCGGGTC 59.685 60.000 21.62 0.00 34.52 4.46
942 953 0.396695 TGCTAGCTAGTTAGGCGGGT 60.397 55.000 21.62 0.00 34.52 5.28
943 954 0.032267 GTGCTAGCTAGTTAGGCGGG 59.968 60.000 21.62 0.00 34.52 6.13
944 955 1.033574 AGTGCTAGCTAGTTAGGCGG 58.966 55.000 21.62 0.00 34.52 6.13
945 956 2.733517 GAAGTGCTAGCTAGTTAGGCG 58.266 52.381 21.62 0.00 34.52 5.52
965 976 2.950309 AGCTCGGGGTGTATATATAGCG 59.050 50.000 3.05 0.00 34.01 4.26
998 1013 1.277842 TCTGTGTCTGTGGTGTTGTGT 59.722 47.619 0.00 0.00 0.00 3.72
999 1014 2.022764 TCTGTGTCTGTGGTGTTGTG 57.977 50.000 0.00 0.00 0.00 3.33
1009 1034 1.000618 TGCTCTGCTCTTCTGTGTCTG 59.999 52.381 0.00 0.00 0.00 3.51
1015 1040 0.321387 TTGGCTGCTCTGCTCTTCTG 60.321 55.000 0.00 0.00 0.00 3.02
1453 1542 3.436924 CAAGCTCGGCTGCATGCA 61.437 61.111 21.29 21.29 45.15 3.96
1455 1544 1.449070 TCTCAAGCTCGGCTGCATG 60.449 57.895 0.50 0.00 39.62 4.06
1456 1545 1.449246 GTCTCAAGCTCGGCTGCAT 60.449 57.895 0.50 0.00 39.62 3.96
1556 1649 6.529084 TTTTATACCCCTGATGATGATGGT 57.471 37.500 0.00 0.00 0.00 3.55
1557 1650 5.416952 GCTTTTATACCCCTGATGATGATGG 59.583 44.000 0.00 0.00 0.00 3.51
1561 1654 5.624159 TCTGCTTTTATACCCCTGATGATG 58.376 41.667 0.00 0.00 0.00 3.07
1562 1655 5.370880 ACTCTGCTTTTATACCCCTGATGAT 59.629 40.000 0.00 0.00 0.00 2.45
1601 1728 7.417612 CAACATTCCCAACACTACATTATAGC 58.582 38.462 0.00 0.00 0.00 2.97
1612 1748 1.995376 AGTCCCAACATTCCCAACAC 58.005 50.000 0.00 0.00 0.00 3.32
1618 1754 3.077359 CACTCTGAAGTCCCAACATTCC 58.923 50.000 0.00 0.00 31.71 3.01
1703 1851 2.330231 AAATCGTTCGTGCACCATTG 57.670 45.000 12.15 0.00 0.00 2.82
1719 1867 7.042797 AGTTACAACAGTGCAAGATGAAAAT 57.957 32.000 4.94 0.00 0.00 1.82
1767 1916 2.466846 GTTTCGTTCGAGAGGTTGTCA 58.533 47.619 0.00 0.00 0.00 3.58
1771 1920 0.386838 ACCGTTTCGTTCGAGAGGTT 59.613 50.000 10.60 0.00 0.00 3.50
1789 1938 2.291741 CTCAAGGAGAAGTGGTTTGCAC 59.708 50.000 0.00 0.00 0.00 4.57
1793 1942 4.412528 ACCTAACTCAAGGAGAAGTGGTTT 59.587 41.667 0.00 0.00 39.15 3.27
1818 1967 3.074281 CAGGACCGGCCCTGTTTA 58.926 61.111 27.51 0.00 46.62 2.01
1834 1983 2.358619 CGGGCCCCCAAAATCTCA 59.641 61.111 18.66 0.00 35.37 3.27
1863 2012 1.134228 TATTAAGAGGCCCCGGGTTC 58.866 55.000 21.85 14.10 0.00 3.62
1866 2015 2.844348 ACATATATTAAGAGGCCCCGGG 59.156 50.000 15.80 15.80 0.00 5.73
1869 2018 9.700831 AATTTGATACATATATTAAGAGGCCCC 57.299 33.333 0.00 0.00 0.00 5.80
1930 2080 9.645059 GCTTGATGAGACACAATTAGCTATATA 57.355 33.333 0.00 0.00 0.00 0.86
1931 2081 8.152898 TGCTTGATGAGACACAATTAGCTATAT 58.847 33.333 0.00 0.00 33.41 0.86
1935 2085 4.582869 TGCTTGATGAGACACAATTAGCT 58.417 39.130 0.00 0.00 33.41 3.32
1970 2120 6.412653 TCGCTTCTTTGTTTTGTCGTAATTTC 59.587 34.615 0.00 0.00 0.00 2.17
1978 2128 5.985781 TCAGTATCGCTTCTTTGTTTTGTC 58.014 37.500 0.00 0.00 0.00 3.18
1985 2135 5.752472 AGTGATGATCAGTATCGCTTCTTTG 59.248 40.000 0.00 0.00 41.27 2.77
1986 2136 5.911752 AGTGATGATCAGTATCGCTTCTTT 58.088 37.500 0.00 0.00 41.27 2.52
2063 2213 0.738412 ATGCATGCGCTTTTGCCTTC 60.738 50.000 21.78 2.40 43.93 3.46
2078 2228 5.535030 AGGTACGACTCTCATAACATATGCA 59.465 40.000 1.58 0.00 0.00 3.96
2087 2237 5.354842 TCTGAGAAGGTACGACTCTCATA 57.645 43.478 16.17 9.64 36.92 2.15
2088 2238 4.223556 TCTGAGAAGGTACGACTCTCAT 57.776 45.455 16.17 0.00 36.92 2.90
2099 2249 4.657969 CCAATTAGGGAGATCTGAGAAGGT 59.342 45.833 0.00 0.00 0.00 3.50
2111 2261 9.525826 AAGAAATATAATCAGCCAATTAGGGAG 57.474 33.333 0.00 0.00 38.09 4.30
2112 2262 9.520515 GAAGAAATATAATCAGCCAATTAGGGA 57.479 33.333 0.00 0.00 38.09 4.20
2113 2263 8.743714 GGAAGAAATATAATCAGCCAATTAGGG 58.256 37.037 0.00 0.00 38.09 3.53
2120 2270 9.507329 GATACTTGGAAGAAATATAATCAGCCA 57.493 33.333 0.00 0.00 0.00 4.75
2151 2301 1.186200 GGTTGCCCTTTGATCCTTCC 58.814 55.000 0.00 0.00 0.00 3.46
2164 2314 1.947456 GATTTATGAGTCGGGGTTGCC 59.053 52.381 0.00 0.00 0.00 4.52
2193 2343 6.992123 TGGACATGGTTTAGCAGTAGATATTG 59.008 38.462 0.00 0.00 0.00 1.90
2202 2352 7.099266 TGATTAATTGGACATGGTTTAGCAG 57.901 36.000 0.00 0.00 0.00 4.24
2231 2381 3.007723 TGTTGTTGCAATATGGCCATTGT 59.992 39.130 26.37 10.75 38.04 2.71
2291 2441 4.977963 CCGTTTTGCCATGATGATTGATAC 59.022 41.667 0.00 0.00 0.00 2.24
2342 4361 2.555199 CAGGCCACATAACTAGCAGAC 58.445 52.381 5.01 0.00 0.00 3.51
2346 4365 2.710096 TTCCAGGCCACATAACTAGC 57.290 50.000 5.01 0.00 0.00 3.42
2355 4374 0.101219 GCAAATCGATTCCAGGCCAC 59.899 55.000 11.83 0.00 0.00 5.01
2389 4444 0.460811 GAGTGACCGCATCAGCATCA 60.461 55.000 0.00 0.00 42.27 3.07
2414 4470 2.012673 GCAGATTTGTCGGCTCTCAAT 58.987 47.619 0.00 0.00 0.00 2.57
2486 4542 3.712016 TTTTCTGGGATTCACCGATCA 57.288 42.857 0.00 0.00 40.11 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.