Multiple sequence alignment - TraesCS6A01G375900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G375900 chr6A 100.000 3397 0 0 1 3397 598023301 598026697 0.000000e+00 6274.0
1 TraesCS6A01G375900 chr6A 84.035 1591 161 49 1044 2588 597939986 597938443 0.000000e+00 1445.0
2 TraesCS6A01G375900 chr6A 94.007 801 46 2 2598 3397 564672573 564673372 0.000000e+00 1212.0
3 TraesCS6A01G375900 chr6A 97.059 68 2 0 91 158 598023325 598023392 7.700000e-22 115.0
4 TraesCS6A01G375900 chr6A 97.059 68 2 0 25 92 598023391 598023458 7.700000e-22 115.0
5 TraesCS6A01G375900 chr6D 86.486 1887 176 48 769 2597 452454616 452456481 0.000000e+00 1999.0
6 TraesCS6A01G375900 chr6D 85.666 1465 146 46 1043 2485 452406208 452404786 0.000000e+00 1483.0
7 TraesCS6A01G375900 chr6D 88.180 423 43 6 305 725 5732346 5731929 6.550000e-137 497.0
8 TraesCS6A01G375900 chr6D 93.750 80 5 0 117 196 452454331 452454410 1.660000e-23 121.0
9 TraesCS6A01G375900 chr6D 93.846 65 4 0 1 65 452454222 452454286 7.760000e-17 99.0
10 TraesCS6A01G375900 chr6D 97.619 42 1 0 51 92 452454331 452454372 4.700000e-09 73.1
11 TraesCS6A01G375900 chr6B 88.376 1342 96 20 724 2020 687083026 687084352 0.000000e+00 1559.0
12 TraesCS6A01G375900 chr6B 83.312 1576 158 64 1043 2588 687016763 687015263 0.000000e+00 1356.0
13 TraesCS6A01G375900 chr6B 87.124 233 25 3 2366 2597 716659873 716660101 3.360000e-65 259.0
14 TraesCS6A01G375900 chr6B 93.548 93 5 1 1 92 687082334 687082426 1.640000e-28 137.0
15 TraesCS6A01G375900 chr6B 86.916 107 13 1 91 196 687082358 687082464 5.950000e-23 119.0
16 TraesCS6A01G375900 chr6B 80.282 142 23 5 2108 2246 687084410 687084549 6.000000e-18 102.0
17 TraesCS6A01G375900 chr1A 95.137 802 38 1 2597 3397 516698653 516699454 0.000000e+00 1264.0
18 TraesCS6A01G375900 chr1A 93.943 809 47 2 2590 3397 551907247 551908054 0.000000e+00 1221.0
19 TraesCS6A01G375900 chr1A 87.983 233 23 3 2366 2597 412532163 412532391 1.550000e-68 270.0
20 TraesCS6A01G375900 chr7A 94.888 802 40 1 2597 3397 34459264 34460065 0.000000e+00 1253.0
21 TraesCS6A01G375900 chr7A 94.140 802 45 2 2597 3397 469384953 469385753 0.000000e+00 1219.0
22 TraesCS6A01G375900 chr7A 88.412 233 22 3 2366 2597 305166270 305166042 3.340000e-70 276.0
23 TraesCS6A01G375900 chr7A 86.695 233 26 3 2366 2597 714899669 714899441 1.560000e-63 254.0
24 TraesCS6A01G375900 chr7A 84.615 156 18 6 2108 2260 679333384 679333232 2.110000e-32 150.0
25 TraesCS6A01G375900 chr4A 94.410 805 44 1 2594 3397 37057879 37057075 0.000000e+00 1236.0
26 TraesCS6A01G375900 chr3A 94.264 802 44 2 2597 3397 573828865 573829665 0.000000e+00 1225.0
27 TraesCS6A01G375900 chr3A 94.030 804 47 1 2595 3397 678323933 678323130 0.000000e+00 1218.0
28 TraesCS6A01G375900 chr3A 93.890 802 47 2 2597 3397 434457961 434458761 0.000000e+00 1208.0
29 TraesCS6A01G375900 chr3A 91.872 406 27 3 1259 1663 736251651 736252051 2.290000e-156 562.0
30 TraesCS6A01G375900 chr3A 83.766 154 19 6 2108 2258 383328318 383328168 1.270000e-29 141.0
31 TraesCS6A01G375900 chrUn 92.365 406 25 3 1259 1663 306829854 306830254 1.060000e-159 573.0
32 TraesCS6A01G375900 chr3B 92.118 406 26 5 1259 1663 809102338 809102738 4.920000e-158 568.0
33 TraesCS6A01G375900 chr3B 92.079 404 23 6 1264 1663 783880986 783881384 8.230000e-156 560.0
34 TraesCS6A01G375900 chr2D 90.049 412 37 4 315 724 640367312 640367721 6.450000e-147 531.0
35 TraesCS6A01G375900 chr2D 88.729 417 40 6 311 723 10488301 10487888 1.410000e-138 503.0
36 TraesCS6A01G375900 chr2D 88.729 417 40 6 311 723 10505422 10505009 1.410000e-138 503.0
37 TraesCS6A01G375900 chr2D 88.780 410 43 3 315 723 3732212 3731805 1.820000e-137 499.0
38 TraesCS6A01G375900 chr2D 88.378 413 40 7 315 723 534306311 534306719 1.100000e-134 490.0
39 TraesCS6A01G375900 chr5A 89.242 409 38 6 315 720 428152029 428152434 1.090000e-139 507.0
40 TraesCS6A01G375900 chr5A 87.983 233 23 3 2366 2597 153397912 153397684 1.550000e-68 270.0
41 TraesCS6A01G375900 chr4D 88.729 417 39 8 311 723 509505778 509505366 1.410000e-138 503.0
42 TraesCS6A01G375900 chr7D 88.592 412 43 4 314 723 589510791 589511200 6.550000e-137 497.0
43 TraesCS6A01G375900 chr2B 87.983 233 23 3 2366 2597 159125539 159125311 1.550000e-68 270.0
44 TraesCS6A01G375900 chr5B 82.692 156 21 6 2108 2260 45761075 45760923 2.130000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G375900 chr6A 598023301 598026697 3396 False 2168.000 6274 98.039333 1 3397 3 chr6A.!!$F2 3396
1 TraesCS6A01G375900 chr6A 597938443 597939986 1543 True 1445.000 1445 84.035000 1044 2588 1 chr6A.!!$R1 1544
2 TraesCS6A01G375900 chr6A 564672573 564673372 799 False 1212.000 1212 94.007000 2598 3397 1 chr6A.!!$F1 799
3 TraesCS6A01G375900 chr6D 452404786 452406208 1422 True 1483.000 1483 85.666000 1043 2485 1 chr6D.!!$R2 1442
4 TraesCS6A01G375900 chr6D 452454222 452456481 2259 False 573.025 1999 92.925250 1 2597 4 chr6D.!!$F1 2596
5 TraesCS6A01G375900 chr6B 687015263 687016763 1500 True 1356.000 1356 83.312000 1043 2588 1 chr6B.!!$R1 1545
6 TraesCS6A01G375900 chr6B 687082334 687084549 2215 False 479.250 1559 87.280500 1 2246 4 chr6B.!!$F2 2245
7 TraesCS6A01G375900 chr1A 516698653 516699454 801 False 1264.000 1264 95.137000 2597 3397 1 chr1A.!!$F2 800
8 TraesCS6A01G375900 chr1A 551907247 551908054 807 False 1221.000 1221 93.943000 2590 3397 1 chr1A.!!$F3 807
9 TraesCS6A01G375900 chr7A 34459264 34460065 801 False 1253.000 1253 94.888000 2597 3397 1 chr7A.!!$F1 800
10 TraesCS6A01G375900 chr7A 469384953 469385753 800 False 1219.000 1219 94.140000 2597 3397 1 chr7A.!!$F2 800
11 TraesCS6A01G375900 chr4A 37057075 37057879 804 True 1236.000 1236 94.410000 2594 3397 1 chr4A.!!$R1 803
12 TraesCS6A01G375900 chr3A 573828865 573829665 800 False 1225.000 1225 94.264000 2597 3397 1 chr3A.!!$F2 800
13 TraesCS6A01G375900 chr3A 678323130 678323933 803 True 1218.000 1218 94.030000 2595 3397 1 chr3A.!!$R2 802
14 TraesCS6A01G375900 chr3A 434457961 434458761 800 False 1208.000 1208 93.890000 2597 3397 1 chr3A.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 1037 0.455633 GCAGCTCGCAATTCAAGGTG 60.456 55.0 3.64 6.22 41.79 4.00 F
2028 2588 0.250081 GGATCGACCAAGGCTCCATC 60.250 60.0 0.00 0.00 38.79 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2639 0.095417 GCAGAAATTGAGCCGTCGTC 59.905 55.000 0.00 0.0 0.00 4.2 R
3254 3898 2.025155 GGTAGCTCGACATGGAAGAGA 58.975 52.381 15.47 0.0 34.13 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.497595 AGATTCCAAATGGTCATGATGAATTG 58.502 34.615 0.00 3.19 36.34 2.32
61 62 8.996271 TCATGATGAATTGCTAATCAGTGTATC 58.004 33.333 0.00 0.00 34.02 2.24
65 66 8.743085 ATGAATTGCTAATCAGTGTATCTGTT 57.257 30.769 0.00 0.00 43.97 3.16
66 67 7.977904 TGAATTGCTAATCAGTGTATCTGTTG 58.022 34.615 0.00 0.00 43.97 3.33
67 68 5.801350 TTGCTAATCAGTGTATCTGTTGC 57.199 39.130 0.00 0.00 43.97 4.17
69 70 4.872124 TGCTAATCAGTGTATCTGTTGCTG 59.128 41.667 0.00 0.00 43.97 4.41
70 71 4.260538 GCTAATCAGTGTATCTGTTGCTGC 60.261 45.833 0.00 0.00 43.97 5.25
71 72 2.837532 TCAGTGTATCTGTTGCTGCA 57.162 45.000 0.00 0.00 43.97 4.41
72 73 3.339253 TCAGTGTATCTGTTGCTGCAT 57.661 42.857 1.84 0.00 43.97 3.96
73 74 3.678289 TCAGTGTATCTGTTGCTGCATT 58.322 40.909 1.84 0.00 43.97 3.56
74 75 4.831107 TCAGTGTATCTGTTGCTGCATTA 58.169 39.130 1.84 0.00 43.97 1.90
75 76 5.430886 TCAGTGTATCTGTTGCTGCATTAT 58.569 37.500 1.84 0.00 43.97 1.28
76 77 5.525012 TCAGTGTATCTGTTGCTGCATTATC 59.475 40.000 1.84 0.00 43.97 1.75
77 78 5.526479 CAGTGTATCTGTTGCTGCATTATCT 59.474 40.000 1.84 0.00 39.17 1.98
78 79 6.037940 CAGTGTATCTGTTGCTGCATTATCTT 59.962 38.462 1.84 0.00 39.17 2.40
79 80 7.225341 CAGTGTATCTGTTGCTGCATTATCTTA 59.775 37.037 1.84 0.00 39.17 2.10
80 81 7.935755 AGTGTATCTGTTGCTGCATTATCTTAT 59.064 33.333 1.84 0.00 0.00 1.73
81 82 8.226448 GTGTATCTGTTGCTGCATTATCTTATC 58.774 37.037 1.84 0.00 0.00 1.75
82 83 6.814506 ATCTGTTGCTGCATTATCTTATCC 57.185 37.500 1.84 0.00 0.00 2.59
84 85 7.066307 TCTGTTGCTGCATTATCTTATCCTA 57.934 36.000 1.84 0.00 0.00 2.94
85 86 7.508687 TCTGTTGCTGCATTATCTTATCCTAA 58.491 34.615 1.84 0.00 0.00 2.69
87 88 7.930217 TGTTGCTGCATTATCTTATCCTAAAC 58.070 34.615 1.84 0.00 0.00 2.01
88 89 7.013274 TGTTGCTGCATTATCTTATCCTAAACC 59.987 37.037 1.84 0.00 0.00 3.27
89 90 6.003950 TGCTGCATTATCTTATCCTAAACCC 58.996 40.000 0.00 0.00 0.00 4.11
90 91 6.003950 GCTGCATTATCTTATCCTAAACCCA 58.996 40.000 0.00 0.00 0.00 4.51
92 93 7.177392 GCTGCATTATCTTATCCTAAACCCATT 59.823 37.037 0.00 0.00 0.00 3.16
93 94 8.635765 TGCATTATCTTATCCTAAACCCATTC 57.364 34.615 0.00 0.00 0.00 2.67
94 95 7.669722 TGCATTATCTTATCCTAAACCCATTCC 59.330 37.037 0.00 0.00 0.00 3.01
95 96 7.669722 GCATTATCTTATCCTAAACCCATTCCA 59.330 37.037 0.00 0.00 0.00 3.53
96 97 9.586732 CATTATCTTATCCTAAACCCATTCCAA 57.413 33.333 0.00 0.00 0.00 3.53
98 99 9.640952 TTATCTTATCCTAAACCCATTCCAAAG 57.359 33.333 0.00 0.00 0.00 2.77
99 100 6.431722 TCTTATCCTAAACCCATTCCAAAGG 58.568 40.000 0.00 0.00 0.00 3.11
107 108 3.036452 CCCATTCCAAAGGGTCATGAT 57.964 47.619 0.00 0.00 40.34 2.45
108 109 2.696707 CCCATTCCAAAGGGTCATGATG 59.303 50.000 0.00 0.00 40.34 3.07
109 110 3.368248 CCATTCCAAAGGGTCATGATGT 58.632 45.455 0.00 0.00 34.93 3.06
110 111 4.535781 CCATTCCAAAGGGTCATGATGTA 58.464 43.478 0.00 0.00 34.93 2.29
111 112 5.142639 CCATTCCAAAGGGTCATGATGTAT 58.857 41.667 0.00 0.00 34.93 2.29
112 113 5.599656 CCATTCCAAAGGGTCATGATGTATT 59.400 40.000 0.00 0.00 34.93 1.89
113 114 6.461927 CCATTCCAAAGGGTCATGATGTATTG 60.462 42.308 0.00 3.19 34.93 1.90
114 115 3.953612 TCCAAAGGGTCATGATGTATTGC 59.046 43.478 0.00 0.00 34.93 3.56
115 116 3.956199 CCAAAGGGTCATGATGTATTGCT 59.044 43.478 0.00 0.00 0.00 3.91
127 128 9.428097 TCATGATGTATTGCTAATCAGTGTATC 57.572 33.333 0.00 0.00 34.02 2.24
162 163 9.014297 CATTATCTTATCCTAAACCCATCAACC 57.986 37.037 0.00 0.00 0.00 3.77
168 169 2.486592 CCTAAACCCATCAACCGTCAAC 59.513 50.000 0.00 0.00 0.00 3.18
185 186 4.156922 CGTCAACTAATATGGGCCAAAACA 59.843 41.667 11.89 0.00 0.00 2.83
192 193 4.806640 ATATGGGCCAAAACAAACTCAG 57.193 40.909 11.89 0.00 0.00 3.35
219 257 2.958355 ACAAATTGTGGTCTGGTTGGAG 59.042 45.455 0.00 0.00 0.00 3.86
229 267 1.978580 TCTGGTTGGAGAGACCTTTCC 59.021 52.381 0.03 0.03 38.04 3.13
233 271 3.204382 TGGTTGGAGAGACCTTTCCTTTT 59.796 43.478 7.91 0.00 38.04 2.27
234 272 4.215908 GGTTGGAGAGACCTTTCCTTTTT 58.784 43.478 7.91 0.00 39.86 1.94
281 743 8.785329 TTTTGTATGTGCATTCTGATGTAGTA 57.215 30.769 0.00 0.00 35.63 1.82
282 744 7.770801 TTGTATGTGCATTCTGATGTAGTAC 57.229 36.000 0.00 0.00 35.63 2.73
283 745 7.112452 TGTATGTGCATTCTGATGTAGTACT 57.888 36.000 0.00 0.00 35.63 2.73
284 746 6.980397 TGTATGTGCATTCTGATGTAGTACTG 59.020 38.462 5.39 0.00 35.63 2.74
285 747 4.758688 TGTGCATTCTGATGTAGTACTGG 58.241 43.478 5.39 0.00 35.63 4.00
286 748 4.222810 TGTGCATTCTGATGTAGTACTGGT 59.777 41.667 5.39 0.00 35.63 4.00
295 757 8.997621 TCTGATGTAGTACTGGTAAAACATTC 57.002 34.615 5.39 2.11 0.00 2.67
305 767 7.296628 ACTGGTAAAACATTCTTAAATGCCA 57.703 32.000 0.00 0.00 45.16 4.92
314 776 4.712122 TTCTTAAATGCCAACGGAATCC 57.288 40.909 0.00 0.00 0.00 3.01
315 777 6.237343 CATTCTTAAATGCCAACGGAATCCG 61.237 44.000 21.40 21.40 43.18 4.18
316 778 8.328575 CATTCTTAAATGCCAACGGAATCCGA 62.329 42.308 29.91 5.45 41.61 4.55
317 779 9.692820 CATTCTTAAATGCCAACGGAATCCGAA 62.693 40.741 29.91 7.38 41.61 4.30
333 795 8.851960 GGAATCCGAAAATACCAAATAAAGAC 57.148 34.615 0.00 0.00 0.00 3.01
334 796 8.463607 GGAATCCGAAAATACCAAATAAAGACA 58.536 33.333 0.00 0.00 0.00 3.41
335 797 9.503427 GAATCCGAAAATACCAAATAAAGACAG 57.497 33.333 0.00 0.00 0.00 3.51
336 798 8.801882 ATCCGAAAATACCAAATAAAGACAGA 57.198 30.769 0.00 0.00 0.00 3.41
337 799 8.263940 TCCGAAAATACCAAATAAAGACAGAG 57.736 34.615 0.00 0.00 0.00 3.35
338 800 6.967199 CCGAAAATACCAAATAAAGACAGAGC 59.033 38.462 0.00 0.00 0.00 4.09
339 801 7.148239 CCGAAAATACCAAATAAAGACAGAGCT 60.148 37.037 0.00 0.00 0.00 4.09
340 802 7.905493 CGAAAATACCAAATAAAGACAGAGCTC 59.095 37.037 5.27 5.27 0.00 4.09
341 803 7.631717 AAATACCAAATAAAGACAGAGCTCC 57.368 36.000 10.93 0.00 0.00 4.70
342 804 4.640771 ACCAAATAAAGACAGAGCTCCA 57.359 40.909 10.93 0.00 0.00 3.86
343 805 5.184892 ACCAAATAAAGACAGAGCTCCAT 57.815 39.130 10.93 0.00 0.00 3.41
344 806 4.946157 ACCAAATAAAGACAGAGCTCCATG 59.054 41.667 10.93 5.69 0.00 3.66
345 807 4.337555 CCAAATAAAGACAGAGCTCCATGG 59.662 45.833 10.93 4.97 0.00 3.66
346 808 5.188434 CAAATAAAGACAGAGCTCCATGGA 58.812 41.667 15.27 15.27 0.00 3.41
347 809 4.686191 ATAAAGACAGAGCTCCATGGAG 57.314 45.455 33.73 33.73 44.56 3.86
348 810 1.202330 AAGACAGAGCTCCATGGAGG 58.798 55.000 36.92 24.67 42.19 4.30
349 811 1.145819 GACAGAGCTCCATGGAGGC 59.854 63.158 36.92 28.76 42.19 4.70
350 812 2.322638 GACAGAGCTCCATGGAGGCC 62.323 65.000 36.92 23.97 42.19 5.19
351 813 2.071262 CAGAGCTCCATGGAGGCCT 61.071 63.158 36.92 27.78 42.19 5.19
352 814 1.307691 AGAGCTCCATGGAGGCCTT 60.308 57.895 36.92 19.35 42.19 4.35
353 815 0.918310 AGAGCTCCATGGAGGCCTTT 60.918 55.000 36.92 21.53 42.19 3.11
354 816 0.839946 GAGCTCCATGGAGGCCTTTA 59.160 55.000 36.92 4.58 42.19 1.85
355 817 1.423161 GAGCTCCATGGAGGCCTTTAT 59.577 52.381 36.92 16.48 42.19 1.40
356 818 1.855599 AGCTCCATGGAGGCCTTTATT 59.144 47.619 36.92 13.75 42.19 1.40
357 819 2.245806 AGCTCCATGGAGGCCTTTATTT 59.754 45.455 36.92 13.14 42.19 1.40
358 820 2.363359 GCTCCATGGAGGCCTTTATTTG 59.637 50.000 36.92 13.51 42.19 2.32
359 821 3.902218 CTCCATGGAGGCCTTTATTTGA 58.098 45.455 31.14 3.17 38.51 2.69
360 822 4.280819 CTCCATGGAGGCCTTTATTTGAA 58.719 43.478 31.14 0.00 38.51 2.69
361 823 4.682563 TCCATGGAGGCCTTTATTTGAAA 58.317 39.130 11.44 0.00 37.29 2.69
362 824 5.090139 TCCATGGAGGCCTTTATTTGAAAA 58.910 37.500 11.44 0.00 37.29 2.29
363 825 5.046663 TCCATGGAGGCCTTTATTTGAAAAC 60.047 40.000 11.44 0.00 37.29 2.43
364 826 5.046376 CCATGGAGGCCTTTATTTGAAAACT 60.046 40.000 6.77 0.00 0.00 2.66
365 827 6.466812 CATGGAGGCCTTTATTTGAAAACTT 58.533 36.000 6.77 0.00 0.00 2.66
366 828 6.096673 TGGAGGCCTTTATTTGAAAACTTC 57.903 37.500 6.77 0.00 0.00 3.01
367 829 5.600484 TGGAGGCCTTTATTTGAAAACTTCA 59.400 36.000 6.77 0.00 38.04 3.02
444 906 8.993121 AGCTAGATACATAATTTACATGTGTGC 58.007 33.333 9.11 0.00 37.22 4.57
445 907 8.773645 GCTAGATACATAATTTACATGTGTGCA 58.226 33.333 9.11 0.00 37.22 4.57
455 917 6.841443 TTTACATGTGTGCAAATTTTCTGG 57.159 33.333 9.11 0.00 0.00 3.86
456 918 4.405116 ACATGTGTGCAAATTTTCTGGT 57.595 36.364 0.00 0.00 0.00 4.00
457 919 4.370917 ACATGTGTGCAAATTTTCTGGTC 58.629 39.130 0.00 0.00 0.00 4.02
458 920 3.077229 TGTGTGCAAATTTTCTGGTCG 57.923 42.857 0.00 0.00 0.00 4.79
459 921 2.685388 TGTGTGCAAATTTTCTGGTCGA 59.315 40.909 0.00 0.00 0.00 4.20
460 922 3.129462 TGTGTGCAAATTTTCTGGTCGAA 59.871 39.130 0.00 0.00 0.00 3.71
461 923 4.109050 GTGTGCAAATTTTCTGGTCGAAA 58.891 39.130 0.00 0.00 39.76 3.46
462 924 4.744631 GTGTGCAAATTTTCTGGTCGAAAT 59.255 37.500 0.00 0.00 41.04 2.17
463 925 5.918011 GTGTGCAAATTTTCTGGTCGAAATA 59.082 36.000 0.00 0.00 41.04 1.40
464 926 5.918011 TGTGCAAATTTTCTGGTCGAAATAC 59.082 36.000 0.00 0.00 41.04 1.89
465 927 5.918011 GTGCAAATTTTCTGGTCGAAATACA 59.082 36.000 0.00 0.00 41.04 2.29
466 928 6.586082 GTGCAAATTTTCTGGTCGAAATACAT 59.414 34.615 0.00 0.00 41.04 2.29
467 929 7.116233 GTGCAAATTTTCTGGTCGAAATACATT 59.884 33.333 0.00 0.00 41.04 2.71
468 930 8.300286 TGCAAATTTTCTGGTCGAAATACATTA 58.700 29.630 0.00 0.00 41.04 1.90
469 931 9.134734 GCAAATTTTCTGGTCGAAATACATTAA 57.865 29.630 0.00 0.00 41.04 1.40
475 937 9.619316 TTTCTGGTCGAAATACATTAAAATGTG 57.381 29.630 16.68 2.02 41.65 3.21
510 972 9.967346 AAAAAGACAAATCTAGGACTTTTTAGC 57.033 29.630 13.53 0.00 41.99 3.09
511 973 8.691661 AAAGACAAATCTAGGACTTTTTAGCA 57.308 30.769 0.00 0.00 33.57 3.49
512 974 8.870075 AAGACAAATCTAGGACTTTTTAGCAT 57.130 30.769 0.00 0.00 33.57 3.79
513 975 9.959721 AAGACAAATCTAGGACTTTTTAGCATA 57.040 29.630 0.00 0.00 33.57 3.14
516 978 9.686683 ACAAATCTAGGACTTTTTAGCATATGT 57.313 29.630 4.29 0.00 0.00 2.29
520 982 9.988815 ATCTAGGACTTTTTAGCATATGTACTG 57.011 33.333 4.29 0.00 0.00 2.74
521 983 8.978472 TCTAGGACTTTTTAGCATATGTACTGT 58.022 33.333 4.29 0.00 0.00 3.55
522 984 9.601217 CTAGGACTTTTTAGCATATGTACTGTT 57.399 33.333 4.29 0.00 0.00 3.16
523 985 8.494016 AGGACTTTTTAGCATATGTACTGTTC 57.506 34.615 4.29 0.00 0.00 3.18
524 986 8.100791 AGGACTTTTTAGCATATGTACTGTTCA 58.899 33.333 4.29 0.00 0.00 3.18
525 987 8.893727 GGACTTTTTAGCATATGTACTGTTCAT 58.106 33.333 4.29 5.26 0.00 2.57
526 988 9.922305 GACTTTTTAGCATATGTACTGTTCATC 57.078 33.333 4.29 0.00 0.00 2.92
527 989 9.672673 ACTTTTTAGCATATGTACTGTTCATCT 57.327 29.630 4.29 0.00 0.00 2.90
530 992 9.665719 TTTTAGCATATGTACTGTTCATCTTCA 57.334 29.630 4.29 0.00 0.00 3.02
531 993 9.665719 TTTAGCATATGTACTGTTCATCTTCAA 57.334 29.630 4.29 0.00 0.00 2.69
532 994 9.665719 TTAGCATATGTACTGTTCATCTTCAAA 57.334 29.630 4.29 0.00 0.00 2.69
533 995 8.206325 AGCATATGTACTGTTCATCTTCAAAG 57.794 34.615 4.29 0.00 0.00 2.77
534 996 7.826252 AGCATATGTACTGTTCATCTTCAAAGT 59.174 33.333 4.29 0.00 0.00 2.66
535 997 8.119226 GCATATGTACTGTTCATCTTCAAAGTC 58.881 37.037 4.29 0.00 0.00 3.01
536 998 9.376075 CATATGTACTGTTCATCTTCAAAGTCT 57.624 33.333 3.04 0.00 0.00 3.24
537 999 7.664082 ATGTACTGTTCATCTTCAAAGTCTG 57.336 36.000 0.00 0.00 0.00 3.51
538 1000 6.582636 TGTACTGTTCATCTTCAAAGTCTGT 58.417 36.000 0.00 0.00 0.00 3.41
539 1001 5.998454 ACTGTTCATCTTCAAAGTCTGTG 57.002 39.130 0.00 0.00 0.00 3.66
540 1002 5.674525 ACTGTTCATCTTCAAAGTCTGTGA 58.325 37.500 0.00 0.00 0.00 3.58
541 1003 6.294473 ACTGTTCATCTTCAAAGTCTGTGAT 58.706 36.000 0.00 0.00 0.00 3.06
542 1004 6.769822 ACTGTTCATCTTCAAAGTCTGTGATT 59.230 34.615 0.00 0.00 0.00 2.57
543 1005 7.284034 ACTGTTCATCTTCAAAGTCTGTGATTT 59.716 33.333 0.00 0.00 0.00 2.17
544 1006 7.999679 TGTTCATCTTCAAAGTCTGTGATTTT 58.000 30.769 0.00 0.00 0.00 1.82
545 1007 9.119418 TGTTCATCTTCAAAGTCTGTGATTTTA 57.881 29.630 0.00 0.00 0.00 1.52
546 1008 9.387123 GTTCATCTTCAAAGTCTGTGATTTTAC 57.613 33.333 0.00 0.00 0.00 2.01
547 1009 8.908786 TCATCTTCAAAGTCTGTGATTTTACT 57.091 30.769 0.00 0.00 0.00 2.24
548 1010 9.342308 TCATCTTCAAAGTCTGTGATTTTACTT 57.658 29.630 0.00 0.00 33.72 2.24
549 1011 9.956720 CATCTTCAAAGTCTGTGATTTTACTTT 57.043 29.630 0.00 0.00 41.56 2.66
573 1035 4.779819 GCAGCTCGCAATTCAAGG 57.220 55.556 3.64 0.00 41.79 3.61
574 1036 1.878775 GCAGCTCGCAATTCAAGGT 59.121 52.632 3.64 0.00 41.79 3.50
575 1037 0.455633 GCAGCTCGCAATTCAAGGTG 60.456 55.000 3.64 6.22 41.79 4.00
576 1038 0.877071 CAGCTCGCAATTCAAGGTGT 59.123 50.000 0.00 0.00 34.62 4.16
577 1039 1.267806 CAGCTCGCAATTCAAGGTGTT 59.732 47.619 0.00 0.00 34.62 3.32
578 1040 1.956477 AGCTCGCAATTCAAGGTGTTT 59.044 42.857 0.00 0.00 0.00 2.83
579 1041 2.030805 AGCTCGCAATTCAAGGTGTTTC 60.031 45.455 0.00 0.00 0.00 2.78
580 1042 2.287547 GCTCGCAATTCAAGGTGTTTCA 60.288 45.455 0.00 0.00 0.00 2.69
581 1043 3.612479 GCTCGCAATTCAAGGTGTTTCAT 60.612 43.478 0.00 0.00 0.00 2.57
582 1044 3.899734 TCGCAATTCAAGGTGTTTCATG 58.100 40.909 0.00 0.00 0.00 3.07
583 1045 2.409378 CGCAATTCAAGGTGTTTCATGC 59.591 45.455 0.00 0.00 0.00 4.06
584 1046 3.656559 GCAATTCAAGGTGTTTCATGCT 58.343 40.909 0.00 0.00 0.00 3.79
585 1047 3.430895 GCAATTCAAGGTGTTTCATGCTG 59.569 43.478 0.00 0.00 0.00 4.41
586 1048 4.796946 GCAATTCAAGGTGTTTCATGCTGA 60.797 41.667 0.00 0.00 0.00 4.26
587 1049 5.291178 CAATTCAAGGTGTTTCATGCTGAA 58.709 37.500 0.00 0.00 34.03 3.02
588 1050 4.998671 TTCAAGGTGTTTCATGCTGAAA 57.001 36.364 7.09 7.09 43.37 2.69
589 1051 4.998671 TCAAGGTGTTTCATGCTGAAAA 57.001 36.364 11.33 2.90 46.53 2.29
590 1052 5.534207 TCAAGGTGTTTCATGCTGAAAAT 57.466 34.783 11.33 0.00 46.53 1.82
591 1053 5.916318 TCAAGGTGTTTCATGCTGAAAATT 58.084 33.333 11.33 4.48 46.53 1.82
592 1054 6.347696 TCAAGGTGTTTCATGCTGAAAATTT 58.652 32.000 11.33 0.00 46.53 1.82
593 1055 6.822676 TCAAGGTGTTTCATGCTGAAAATTTT 59.177 30.769 2.28 2.28 46.53 1.82
594 1056 6.849588 AGGTGTTTCATGCTGAAAATTTTC 57.150 33.333 21.60 21.60 46.53 2.29
595 1057 6.347696 AGGTGTTTCATGCTGAAAATTTTCA 58.652 32.000 27.39 27.39 46.53 2.69
596 1058 6.258507 AGGTGTTTCATGCTGAAAATTTTCAC 59.741 34.615 26.01 21.69 46.53 3.18
597 1059 6.036953 GGTGTTTCATGCTGAAAATTTTCACA 59.963 34.615 26.01 25.37 46.53 3.58
598 1060 6.901357 GTGTTTCATGCTGAAAATTTTCACAC 59.099 34.615 26.01 23.20 46.53 3.82
599 1061 6.592994 TGTTTCATGCTGAAAATTTTCACACA 59.407 30.769 26.01 24.76 46.53 3.72
600 1062 7.280428 TGTTTCATGCTGAAAATTTTCACACAT 59.720 29.630 26.01 25.60 46.53 3.21
601 1063 8.763356 GTTTCATGCTGAAAATTTTCACACATA 58.237 29.630 27.90 18.65 46.53 2.29
602 1064 7.872163 TCATGCTGAAAATTTTCACACATAC 57.128 32.000 27.90 16.56 41.88 2.39
603 1065 7.432059 TCATGCTGAAAATTTTCACACATACA 58.568 30.769 27.90 20.29 41.88 2.29
604 1066 7.381948 TCATGCTGAAAATTTTCACACATACAC 59.618 33.333 27.90 14.47 41.88 2.90
605 1067 6.804677 TGCTGAAAATTTTCACACATACACT 58.195 32.000 26.01 0.00 41.88 3.55
606 1068 7.264221 TGCTGAAAATTTTCACACATACACTT 58.736 30.769 26.01 0.00 41.88 3.16
607 1069 7.763528 TGCTGAAAATTTTCACACATACACTTT 59.236 29.630 26.01 0.00 41.88 2.66
608 1070 9.243637 GCTGAAAATTTTCACACATACACTTTA 57.756 29.630 26.01 4.03 41.88 1.85
613 1075 9.691362 AAATTTTCACACATACACTTTACATCC 57.309 29.630 0.00 0.00 0.00 3.51
614 1076 8.635765 ATTTTCACACATACACTTTACATCCT 57.364 30.769 0.00 0.00 0.00 3.24
615 1077 8.458573 TTTTCACACATACACTTTACATCCTT 57.541 30.769 0.00 0.00 0.00 3.36
616 1078 7.433708 TTCACACATACACTTTACATCCTTG 57.566 36.000 0.00 0.00 0.00 3.61
617 1079 5.411361 TCACACATACACTTTACATCCTTGC 59.589 40.000 0.00 0.00 0.00 4.01
618 1080 5.181056 CACACATACACTTTACATCCTTGCA 59.819 40.000 0.00 0.00 0.00 4.08
619 1081 5.945784 ACACATACACTTTACATCCTTGCAT 59.054 36.000 0.00 0.00 0.00 3.96
620 1082 7.065683 CACACATACACTTTACATCCTTGCATA 59.934 37.037 0.00 0.00 0.00 3.14
621 1083 7.065803 ACACATACACTTTACATCCTTGCATAC 59.934 37.037 0.00 0.00 0.00 2.39
622 1084 7.065683 CACATACACTTTACATCCTTGCATACA 59.934 37.037 0.00 0.00 0.00 2.29
623 1085 7.775093 ACATACACTTTACATCCTTGCATACAT 59.225 33.333 0.00 0.00 0.00 2.29
624 1086 6.441093 ACACTTTACATCCTTGCATACATG 57.559 37.500 0.00 0.00 0.00 3.21
625 1087 5.945784 ACACTTTACATCCTTGCATACATGT 59.054 36.000 2.69 2.69 33.95 3.21
626 1088 6.127925 ACACTTTACATCCTTGCATACATGTG 60.128 38.462 9.11 0.00 31.83 3.21
627 1089 5.945784 ACTTTACATCCTTGCATACATGTGT 59.054 36.000 9.11 0.00 31.83 3.72
628 1090 7.065683 CACTTTACATCCTTGCATACATGTGTA 59.934 37.037 9.11 0.00 31.83 2.90
629 1091 7.775093 ACTTTACATCCTTGCATACATGTGTAT 59.225 33.333 9.11 0.00 41.58 2.29
630 1092 8.518430 TTTACATCCTTGCATACATGTGTATT 57.482 30.769 9.11 0.00 39.06 1.89
631 1093 8.518430 TTACATCCTTGCATACATGTGTATTT 57.482 30.769 9.11 0.00 39.06 1.40
632 1094 7.408756 ACATCCTTGCATACATGTGTATTTT 57.591 32.000 9.11 0.00 39.06 1.82
633 1095 7.259882 ACATCCTTGCATACATGTGTATTTTG 58.740 34.615 9.11 0.00 39.06 2.44
634 1096 6.832520 TCCTTGCATACATGTGTATTTTGT 57.167 33.333 9.11 0.00 39.06 2.83
635 1097 6.851609 TCCTTGCATACATGTGTATTTTGTC 58.148 36.000 9.11 0.00 39.06 3.18
636 1098 6.432472 TCCTTGCATACATGTGTATTTTGTCA 59.568 34.615 9.11 0.00 39.06 3.58
637 1099 6.748658 CCTTGCATACATGTGTATTTTGTCAG 59.251 38.462 9.11 0.00 39.06 3.51
638 1100 7.361971 CCTTGCATACATGTGTATTTTGTCAGA 60.362 37.037 9.11 0.00 39.06 3.27
639 1101 7.446001 TGCATACATGTGTATTTTGTCAGAA 57.554 32.000 9.11 0.00 39.06 3.02
640 1102 8.054152 TGCATACATGTGTATTTTGTCAGAAT 57.946 30.769 9.11 0.00 39.06 2.40
641 1103 8.522003 TGCATACATGTGTATTTTGTCAGAATT 58.478 29.630 9.11 0.00 39.06 2.17
642 1104 9.357652 GCATACATGTGTATTTTGTCAGAATTT 57.642 29.630 9.11 0.00 39.06 1.82
692 1154 8.962857 TGAATTTTTCAAAACAAAAAGGCTTC 57.037 26.923 0.00 0.00 38.36 3.86
693 1155 7.748241 TGAATTTTTCAAAACAAAAAGGCTTCG 59.252 29.630 0.00 0.00 38.36 3.79
694 1156 6.546972 TTTTTCAAAACAAAAAGGCTTCGT 57.453 29.167 0.00 0.00 31.65 3.85
695 1157 5.523013 TTTCAAAACAAAAAGGCTTCGTG 57.477 34.783 0.00 4.31 0.00 4.35
696 1158 4.442375 TCAAAACAAAAAGGCTTCGTGA 57.558 36.364 14.90 3.19 0.00 4.35
697 1159 4.810790 TCAAAACAAAAAGGCTTCGTGAA 58.189 34.783 14.90 0.00 0.00 3.18
698 1160 4.862018 TCAAAACAAAAAGGCTTCGTGAAG 59.138 37.500 14.90 5.24 41.24 3.02
707 1169 3.498676 CTTCGTGAAGCTCCGTCTT 57.501 52.632 0.00 0.00 0.00 3.01
708 1170 1.341606 CTTCGTGAAGCTCCGTCTTC 58.658 55.000 0.00 0.00 42.04 2.87
715 1177 3.476552 TGAAGCTCCGTCTTCAAAATGT 58.523 40.909 8.84 0.00 46.56 2.71
716 1178 3.498397 TGAAGCTCCGTCTTCAAAATGTC 59.502 43.478 8.84 0.00 46.56 3.06
717 1179 2.427506 AGCTCCGTCTTCAAAATGTCC 58.572 47.619 0.00 0.00 0.00 4.02
718 1180 2.039084 AGCTCCGTCTTCAAAATGTCCT 59.961 45.455 0.00 0.00 0.00 3.85
719 1181 3.260884 AGCTCCGTCTTCAAAATGTCCTA 59.739 43.478 0.00 0.00 0.00 2.94
720 1182 3.371285 GCTCCGTCTTCAAAATGTCCTAC 59.629 47.826 0.00 0.00 0.00 3.18
721 1183 4.822026 CTCCGTCTTCAAAATGTCCTACT 58.178 43.478 0.00 0.00 0.00 2.57
722 1184 4.817517 TCCGTCTTCAAAATGTCCTACTC 58.182 43.478 0.00 0.00 0.00 2.59
723 1185 3.612860 CCGTCTTCAAAATGTCCTACTCG 59.387 47.826 0.00 0.00 0.00 4.18
724 1186 4.482386 CGTCTTCAAAATGTCCTACTCGA 58.518 43.478 0.00 0.00 0.00 4.04
725 1187 4.323868 CGTCTTCAAAATGTCCTACTCGAC 59.676 45.833 0.00 0.00 0.00 4.20
726 1188 4.323868 GTCTTCAAAATGTCCTACTCGACG 59.676 45.833 0.00 0.00 35.40 5.12
727 1189 3.226346 TCAAAATGTCCTACTCGACGG 57.774 47.619 0.00 0.00 35.40 4.79
728 1190 2.821378 TCAAAATGTCCTACTCGACGGA 59.179 45.455 0.00 0.00 35.40 4.69
729 1191 3.256383 TCAAAATGTCCTACTCGACGGAA 59.744 43.478 0.00 0.00 35.40 4.30
730 1192 4.081862 TCAAAATGTCCTACTCGACGGAAT 60.082 41.667 0.00 0.00 35.40 3.01
731 1193 3.712091 AATGTCCTACTCGACGGAATC 57.288 47.619 0.00 0.00 35.40 2.52
738 1200 4.341235 TCCTACTCGACGGAATCATTGAAT 59.659 41.667 0.00 0.00 0.00 2.57
740 1202 5.859114 CCTACTCGACGGAATCATTGAATAG 59.141 44.000 0.00 0.00 0.00 1.73
755 1217 8.025270 TCATTGAATAGGGCAATCATTCATTT 57.975 30.769 0.00 0.00 38.21 2.32
790 1278 9.061610 CATGAAATACGTCCAATTGTAGAAAAC 57.938 33.333 4.43 0.00 0.00 2.43
799 1287 7.415541 CGTCCAATTGTAGAAAACCATGATGAT 60.416 37.037 4.43 0.00 0.00 2.45
837 1348 4.462508 TCTGTCTGCTCAGATTTACCAG 57.537 45.455 2.62 5.66 39.20 4.00
895 1406 5.830000 ACTAATAACGCCTTCCCAAAATC 57.170 39.130 0.00 0.00 0.00 2.17
900 1411 0.602562 CGCCTTCCCAAAATCAGCAA 59.397 50.000 0.00 0.00 0.00 3.91
968 1494 2.171448 AGCTCCCAGAATATTCGCTTGT 59.829 45.455 9.78 0.00 0.00 3.16
1041 1585 2.125188 GAGCAGAGGCCAGAGCAC 60.125 66.667 5.01 0.00 42.56 4.40
1065 1609 2.479750 GGTCTACGGCGGAGAGGAC 61.480 68.421 24.60 12.04 0.00 3.85
1077 1621 4.742201 GAGGACGCGCTGAGGCAA 62.742 66.667 5.73 0.00 38.60 4.52
1247 1791 2.345244 CAAGCTGCACCTCCTCGT 59.655 61.111 1.02 0.00 0.00 4.18
1822 2366 1.446792 ATGCTCTGCAAGGACGTCG 60.447 57.895 9.92 0.00 43.62 5.12
1824 2368 3.175240 CTCTGCAAGGACGTCGCG 61.175 66.667 9.92 0.00 0.00 5.87
1866 2410 2.438021 AGTCCTGAGTAAGCACCAACAA 59.562 45.455 0.00 0.00 0.00 2.83
1867 2411 3.118038 AGTCCTGAGTAAGCACCAACAAA 60.118 43.478 0.00 0.00 0.00 2.83
1869 2413 3.135712 TCCTGAGTAAGCACCAACAAAGA 59.864 43.478 0.00 0.00 0.00 2.52
1872 2416 4.523083 TGAGTAAGCACCAACAAAGAACT 58.477 39.130 0.00 0.00 0.00 3.01
1873 2417 5.676552 TGAGTAAGCACCAACAAAGAACTA 58.323 37.500 0.00 0.00 0.00 2.24
1877 2435 5.695851 AAGCACCAACAAAGAACTATGAG 57.304 39.130 0.00 0.00 0.00 2.90
1878 2436 4.718961 AGCACCAACAAAGAACTATGAGT 58.281 39.130 0.00 0.00 0.00 3.41
1897 2455 4.261801 GAGTGATCCCCTGAATCGAAAAA 58.738 43.478 0.00 0.00 0.00 1.94
1904 2462 2.420022 CCCTGAATCGAAAAATGCTCGT 59.580 45.455 0.00 0.00 37.56 4.18
1917 2477 2.202492 CTCGTCGCCCTCGAGTTG 60.202 66.667 12.31 3.11 46.46 3.16
1918 2478 2.670592 TCGTCGCCCTCGAGTTGA 60.671 61.111 12.31 2.98 46.46 3.18
1920 2480 0.745486 TCGTCGCCCTCGAGTTGATA 60.745 55.000 12.31 0.00 46.46 2.15
1970 2530 1.152138 GCAGGGCATCCATGGATCA 59.848 57.895 24.93 0.00 34.83 2.92
1985 2545 3.649277 ATCACGAGCTGCGGTGGAC 62.649 63.158 21.00 0.21 46.49 4.02
2025 2585 3.309582 TGGATCGACCAAGGCTCC 58.690 61.111 4.51 0.00 46.75 4.70
2026 2586 1.612146 TGGATCGACCAAGGCTCCA 60.612 57.895 4.51 1.19 46.75 3.86
2027 2587 0.982852 TGGATCGACCAAGGCTCCAT 60.983 55.000 4.51 0.00 46.75 3.41
2028 2588 0.250081 GGATCGACCAAGGCTCCATC 60.250 60.000 0.00 0.00 38.79 3.51
2030 2590 0.982852 ATCGACCAAGGCTCCATCCA 60.983 55.000 0.00 0.00 0.00 3.41
2069 2639 2.512485 AGATCTTCTGCGCAGATGAG 57.488 50.000 40.79 34.29 42.44 2.90
2070 2640 2.030371 AGATCTTCTGCGCAGATGAGA 58.970 47.619 40.79 37.07 42.44 3.27
2071 2641 2.126467 GATCTTCTGCGCAGATGAGAC 58.874 52.381 40.79 34.37 42.44 3.36
2076 2646 2.951745 GCGCAGATGAGACGACGG 60.952 66.667 0.30 0.00 0.00 4.79
2080 2678 1.803289 CAGATGAGACGACGGCTCA 59.197 57.895 34.01 34.01 45.52 4.26
2087 2685 1.656095 GAGACGACGGCTCAATTTCTG 59.344 52.381 25.77 0.00 32.67 3.02
2088 2686 0.095417 GACGACGGCTCAATTTCTGC 59.905 55.000 0.00 0.00 0.00 4.26
2089 2687 1.298859 ACGACGGCTCAATTTCTGCC 61.299 55.000 0.00 0.00 42.94 4.85
2090 2688 1.021390 CGACGGCTCAATTTCTGCCT 61.021 55.000 10.26 0.41 44.09 4.75
2091 2689 0.729690 GACGGCTCAATTTCTGCCTC 59.270 55.000 10.26 4.97 44.09 4.70
2092 2690 1.021390 ACGGCTCAATTTCTGCCTCG 61.021 55.000 10.26 0.00 44.09 4.63
2093 2691 1.021390 CGGCTCAATTTCTGCCTCGT 61.021 55.000 10.26 0.00 44.09 4.18
2094 2692 1.168714 GGCTCAATTTCTGCCTCGTT 58.831 50.000 6.01 0.00 43.05 3.85
2095 2693 1.135575 GGCTCAATTTCTGCCTCGTTG 60.136 52.381 6.01 0.00 43.05 4.10
2096 2694 1.806542 GCTCAATTTCTGCCTCGTTGA 59.193 47.619 0.00 0.00 0.00 3.18
2097 2695 2.421424 GCTCAATTTCTGCCTCGTTGAT 59.579 45.455 0.00 0.00 0.00 2.57
2098 2696 3.486542 GCTCAATTTCTGCCTCGTTGATC 60.487 47.826 0.00 0.00 0.00 2.92
2099 2697 3.937706 CTCAATTTCTGCCTCGTTGATCT 59.062 43.478 0.00 0.00 0.00 2.75
2100 2698 3.935203 TCAATTTCTGCCTCGTTGATCTC 59.065 43.478 0.00 0.00 0.00 2.75
2101 2699 3.616956 ATTTCTGCCTCGTTGATCTCA 57.383 42.857 0.00 0.00 0.00 3.27
2102 2700 3.616956 TTTCTGCCTCGTTGATCTCAT 57.383 42.857 0.00 0.00 0.00 2.90
2103 2701 2.879002 TCTGCCTCGTTGATCTCATC 57.121 50.000 0.00 0.00 0.00 2.92
2104 2702 1.410517 TCTGCCTCGTTGATCTCATCC 59.589 52.381 0.00 0.00 0.00 3.51
2105 2703 1.411977 CTGCCTCGTTGATCTCATCCT 59.588 52.381 0.00 0.00 0.00 3.24
2106 2704 1.137675 TGCCTCGTTGATCTCATCCTG 59.862 52.381 0.00 0.00 0.00 3.86
2109 2707 1.137675 CTCGTTGATCTCATCCTGCCA 59.862 52.381 0.00 0.00 0.00 4.92
2116 2714 2.519771 TCTCATCCTGCCAGCAAATT 57.480 45.000 0.00 0.00 0.00 1.82
2127 2725 0.527113 CAGCAAATTGGCGATGGACA 59.473 50.000 0.00 0.00 39.27 4.02
2134 2732 1.298157 TTGGCGATGGACAAGAAGCG 61.298 55.000 0.00 0.00 35.85 4.68
2136 2734 1.741770 GCGATGGACAAGAAGCGGT 60.742 57.895 0.00 0.00 0.00 5.68
2152 2750 2.668550 GTGGTGGTGCCGGAGTTC 60.669 66.667 5.05 0.00 41.21 3.01
2169 2773 5.465935 GGAGTTCAGTTCAGTCAGTAGAAG 58.534 45.833 0.00 0.00 0.00 2.85
2178 2782 4.259356 TCAGTCAGTAGAAGTAGCGCTAA 58.741 43.478 20.73 0.00 0.00 3.09
2182 2786 5.357314 AGTCAGTAGAAGTAGCGCTAATTCA 59.643 40.000 41.67 30.16 41.14 2.57
2183 2787 5.683743 GTCAGTAGAAGTAGCGCTAATTCAG 59.316 44.000 41.67 31.24 41.14 3.02
2186 2790 4.993029 AGAAGTAGCGCTAATTCAGTCT 57.007 40.909 41.67 27.75 41.14 3.24
2193 2797 2.217393 GCGCTAATTCAGTCTGTGATCG 59.783 50.000 0.00 0.00 34.17 3.69
2198 2802 6.034577 CGCTAATTCAGTCTGTGATCGTTTAA 59.965 38.462 0.00 0.00 34.17 1.52
2201 2805 4.866508 TCAGTCTGTGATCGTTTAAGGT 57.133 40.909 0.00 0.00 0.00 3.50
2202 2806 4.806330 TCAGTCTGTGATCGTTTAAGGTC 58.194 43.478 0.00 0.00 0.00 3.85
2204 2808 3.504906 AGTCTGTGATCGTTTAAGGTCGA 59.495 43.478 0.00 0.00 40.28 4.20
2205 2809 3.852536 GTCTGTGATCGTTTAAGGTCGAG 59.147 47.826 0.00 0.00 39.38 4.04
2207 2811 3.571571 TGTGATCGTTTAAGGTCGAGTG 58.428 45.455 0.00 0.00 39.38 3.51
2208 2812 2.921754 GTGATCGTTTAAGGTCGAGTGG 59.078 50.000 0.00 0.00 39.38 4.00
2209 2813 2.559668 TGATCGTTTAAGGTCGAGTGGT 59.440 45.455 0.00 0.00 39.38 4.16
2213 2817 2.140717 GTTTAAGGTCGAGTGGTGGTG 58.859 52.381 0.00 0.00 0.00 4.17
2225 2830 1.057275 TGGTGGTGGTGGTGAAGCTA 61.057 55.000 0.00 0.00 0.00 3.32
2247 2852 3.505293 AGAATTGCAGAAGCTTTCACCTC 59.495 43.478 0.00 0.00 42.74 3.85
2248 2853 1.229428 TTGCAGAAGCTTTCACCTCG 58.771 50.000 0.00 0.00 42.74 4.63
2249 2854 1.230635 TGCAGAAGCTTTCACCTCGC 61.231 55.000 0.00 0.96 42.74 5.03
2251 2856 0.795085 CAGAAGCTTTCACCTCGCTG 59.205 55.000 0.00 0.00 33.64 5.18
2334 2968 5.780793 AGCTGAAGAAGAAGAGGGTTAGTAA 59.219 40.000 0.00 0.00 0.00 2.24
2338 2972 8.120140 TGAAGAAGAAGAGGGTTAGTAACTAC 57.880 38.462 12.65 6.58 0.00 2.73
2339 2973 6.756299 AGAAGAAGAGGGTTAGTAACTACG 57.244 41.667 12.65 0.00 0.00 3.51
2340 2974 6.244654 AGAAGAAGAGGGTTAGTAACTACGT 58.755 40.000 12.65 0.00 0.00 3.57
2341 2975 7.398024 AGAAGAAGAGGGTTAGTAACTACGTA 58.602 38.462 12.65 0.00 0.00 3.57
2344 2978 8.900983 AGAAGAGGGTTAGTAACTACGTATAG 57.099 38.462 12.65 0.00 34.25 1.31
2346 2980 8.443953 AAGAGGGTTAGTAACTACGTATAGTG 57.556 38.462 12.65 0.00 41.00 2.74
2347 2981 6.484977 AGAGGGTTAGTAACTACGTATAGTGC 59.515 42.308 12.65 0.00 41.00 4.40
2348 2982 6.360618 AGGGTTAGTAACTACGTATAGTGCT 58.639 40.000 12.65 0.00 41.00 4.40
2356 2990 9.606631 AGTAACTACGTATAGTGCTTAAGTAGT 57.393 33.333 6.16 6.16 41.00 2.73
2357 2991 9.856803 GTAACTACGTATAGTGCTTAAGTAGTC 57.143 37.037 3.97 0.00 41.00 2.59
2358 2992 7.171447 ACTACGTATAGTGCTTAAGTAGTCG 57.829 40.000 3.97 5.46 40.32 4.18
2363 2997 2.168496 AGTGCTTAAGTAGTCGGCAGA 58.832 47.619 4.02 0.00 33.47 4.26
2373 3007 1.583054 AGTCGGCAGAGTTTGTTCAC 58.417 50.000 0.00 0.00 0.00 3.18
2398 3034 7.169140 ACAAGAACGAAAATGGAGCAAAAATAC 59.831 33.333 0.00 0.00 0.00 1.89
2399 3035 6.981722 AGAACGAAAATGGAGCAAAAATACT 58.018 32.000 0.00 0.00 0.00 2.12
2441 3077 0.452184 TTTTCCGCGTGTTGCTTCAA 59.548 45.000 4.92 0.00 43.27 2.69
2442 3078 0.248296 TTTCCGCGTGTTGCTTCAAC 60.248 50.000 4.92 2.96 43.78 3.18
2448 3084 2.381589 GCGTGTTGCTTCAACTTAACC 58.618 47.619 10.52 0.00 43.85 2.85
2449 3085 2.032924 GCGTGTTGCTTCAACTTAACCT 59.967 45.455 10.52 0.00 43.85 3.50
2451 3087 3.064820 CGTGTTGCTTCAACTTAACCTGT 59.935 43.478 10.52 0.00 43.85 4.00
2455 3091 5.359576 TGTTGCTTCAACTTAACCTGTCATT 59.640 36.000 10.52 0.00 43.85 2.57
2456 3092 5.437289 TGCTTCAACTTAACCTGTCATTG 57.563 39.130 0.00 0.00 0.00 2.82
2460 3096 6.803807 GCTTCAACTTAACCTGTCATTGATTC 59.196 38.462 0.00 0.00 0.00 2.52
2462 3098 7.439157 TCAACTTAACCTGTCATTGATTCTG 57.561 36.000 0.00 0.00 0.00 3.02
2463 3099 5.886960 ACTTAACCTGTCATTGATTCTGC 57.113 39.130 0.00 0.00 0.00 4.26
2494 3130 6.262944 TCCACAACACTCTTACTAGTTCGTTA 59.737 38.462 0.00 0.00 0.00 3.18
2514 3150 6.318144 TCGTTACCAAATGAACACCAACTAAA 59.682 34.615 0.00 0.00 0.00 1.85
2544 3180 3.435275 AGGTCTCTACAAGTCTGCATGA 58.565 45.455 0.00 0.00 0.00 3.07
2560 3203 4.329392 TGCATGATGTGATGTCTTGTCTT 58.671 39.130 0.00 0.00 0.00 3.01
2585 3228 1.337118 GGGGCTGAACATTTGGTGAA 58.663 50.000 0.00 0.00 0.00 3.18
2610 3253 2.900106 GCTGAGGCCAACTCCACCT 61.900 63.158 5.01 0.00 46.01 4.00
2642 3285 3.892200 GGACGTCCGTTTTGTCCTA 57.108 52.632 20.85 0.00 46.86 2.94
2662 3305 5.075344 TCCTATTTTTGTCCCTTTGGGTAGT 59.925 40.000 2.25 0.00 44.74 2.73
2670 3313 2.990284 TCCCTTTGGGTAGTGATTTGGA 59.010 45.455 2.25 0.00 44.74 3.53
2683 3326 0.902531 ATTTGGAGTCGTGTCCGGAT 59.097 50.000 7.81 0.00 39.81 4.18
2687 3330 1.226717 GAGTCGTGTCCGGATCTGC 60.227 63.158 7.81 0.00 33.95 4.26
2693 3336 2.764128 GTCCGGATCTGCCCTGGA 60.764 66.667 7.81 0.00 0.00 3.86
2738 3381 1.678970 GGACGCATCCTTTTGCCCT 60.679 57.895 0.00 0.00 42.45 5.19
2744 3387 2.224523 CGCATCCTTTTGCCCTATCCTA 60.225 50.000 0.00 0.00 39.52 2.94
2843 3486 3.760035 CCAGCGGCCTACACGACT 61.760 66.667 0.00 0.00 0.00 4.18
3048 3692 2.827051 CGCCGATCGGACGACCTAA 61.827 63.158 37.64 0.00 37.11 2.69
3170 3814 1.073199 CCTCCTTCGCTTTGGTGGT 59.927 57.895 0.00 0.00 33.61 4.16
3272 3916 2.025155 GGTCTCTTCCATGTCGAGCTA 58.975 52.381 0.00 0.00 0.00 3.32
3316 3960 5.055812 CCATGTCTATCTTCCTCTTCTTGC 58.944 45.833 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.734924 TTAGGATAAGATAATGCAGCAACAG 57.265 36.000 0.00 0.00 0.00 3.16
65 66 6.003950 GGGTTTAGGATAAGATAATGCAGCA 58.996 40.000 0.00 0.00 0.00 4.41
66 67 6.003950 TGGGTTTAGGATAAGATAATGCAGC 58.996 40.000 0.00 0.00 0.00 5.25
67 68 8.641498 AATGGGTTTAGGATAAGATAATGCAG 57.359 34.615 0.00 0.00 0.00 4.41
69 70 7.669722 TGGAATGGGTTTAGGATAAGATAATGC 59.330 37.037 0.00 0.00 0.00 3.56
70 71 9.586732 TTGGAATGGGTTTAGGATAAGATAATG 57.413 33.333 0.00 0.00 0.00 1.90
72 73 9.640952 CTTTGGAATGGGTTTAGGATAAGATAA 57.359 33.333 0.00 0.00 0.00 1.75
73 74 8.224720 CCTTTGGAATGGGTTTAGGATAAGATA 58.775 37.037 0.00 0.00 0.00 1.98
74 75 7.069344 CCTTTGGAATGGGTTTAGGATAAGAT 58.931 38.462 0.00 0.00 0.00 2.40
75 76 6.431722 CCTTTGGAATGGGTTTAGGATAAGA 58.568 40.000 0.00 0.00 0.00 2.10
76 77 5.598417 CCCTTTGGAATGGGTTTAGGATAAG 59.402 44.000 2.71 0.00 38.30 1.73
77 78 5.524535 CCCTTTGGAATGGGTTTAGGATAA 58.475 41.667 2.71 0.00 38.30 1.75
78 79 5.137412 CCCTTTGGAATGGGTTTAGGATA 57.863 43.478 2.71 0.00 38.30 2.59
79 80 3.994317 CCCTTTGGAATGGGTTTAGGAT 58.006 45.455 2.71 0.00 38.30 3.24
80 81 3.466395 CCCTTTGGAATGGGTTTAGGA 57.534 47.619 2.71 0.00 38.30 2.94
87 88 2.530460 TCATGACCCTTTGGAATGGG 57.470 50.000 8.48 8.48 46.16 4.00
88 89 3.368248 ACATCATGACCCTTTGGAATGG 58.632 45.455 0.00 0.00 33.07 3.16
89 90 6.509656 CAATACATCATGACCCTTTGGAATG 58.490 40.000 0.00 0.00 34.81 2.67
90 91 5.069516 GCAATACATCATGACCCTTTGGAAT 59.930 40.000 0.00 0.00 34.81 3.01
92 93 3.953612 GCAATACATCATGACCCTTTGGA 59.046 43.478 0.00 0.00 34.81 3.53
93 94 3.956199 AGCAATACATCATGACCCTTTGG 59.044 43.478 0.00 0.00 37.80 3.28
94 95 6.698008 TTAGCAATACATCATGACCCTTTG 57.302 37.500 0.00 1.79 0.00 2.77
95 96 7.062322 TGATTAGCAATACATCATGACCCTTT 58.938 34.615 0.00 0.00 0.00 3.11
96 97 6.604171 TGATTAGCAATACATCATGACCCTT 58.396 36.000 0.00 0.00 0.00 3.95
97 98 6.183361 ACTGATTAGCAATACATCATGACCCT 60.183 38.462 0.00 0.00 0.00 4.34
98 99 6.000219 ACTGATTAGCAATACATCATGACCC 59.000 40.000 0.00 0.00 0.00 4.46
99 100 6.484643 ACACTGATTAGCAATACATCATGACC 59.515 38.462 0.00 0.00 0.00 4.02
100 101 7.488187 ACACTGATTAGCAATACATCATGAC 57.512 36.000 0.00 0.00 0.00 3.06
101 102 9.428097 GATACACTGATTAGCAATACATCATGA 57.572 33.333 0.00 0.00 0.00 3.07
102 103 9.433153 AGATACACTGATTAGCAATACATCATG 57.567 33.333 0.00 0.00 0.00 3.07
127 128 7.734924 TTAGGATAAGATAATGCAGCAACAG 57.265 36.000 0.00 0.00 0.00 3.16
162 163 4.156922 TGTTTTGGCCCATATTAGTTGACG 59.843 41.667 0.00 0.00 0.00 4.35
168 169 6.279513 TGAGTTTGTTTTGGCCCATATTAG 57.720 37.500 0.00 0.00 0.00 1.73
185 186 4.501915 CCACAATTTGTCATGGCTGAGTTT 60.502 41.667 0.00 0.00 30.18 2.66
192 193 2.353011 CCAGACCACAATTTGTCATGGC 60.353 50.000 0.00 0.00 35.49 4.40
233 271 5.155278 TGCTACCGATCAACCTTTCTAAA 57.845 39.130 0.00 0.00 0.00 1.85
234 272 4.811969 TGCTACCGATCAACCTTTCTAA 57.188 40.909 0.00 0.00 0.00 2.10
235 273 5.353394 AATGCTACCGATCAACCTTTCTA 57.647 39.130 0.00 0.00 0.00 2.10
236 274 3.914426 ATGCTACCGATCAACCTTTCT 57.086 42.857 0.00 0.00 0.00 2.52
237 275 4.965119 AAATGCTACCGATCAACCTTTC 57.035 40.909 0.00 0.00 0.00 2.62
248 710 3.755965 TGCACATACAAAATGCTACCG 57.244 42.857 0.00 0.00 40.13 4.02
249 711 5.745294 CAGAATGCACATACAAAATGCTACC 59.255 40.000 0.00 0.00 40.13 3.18
281 743 7.296628 TGGCATTTAAGAATGTTTTACCAGT 57.703 32.000 1.63 0.00 43.67 4.00
282 744 7.148820 CGTTGGCATTTAAGAATGTTTTACCAG 60.149 37.037 0.00 0.00 43.67 4.00
283 745 6.642950 CGTTGGCATTTAAGAATGTTTTACCA 59.357 34.615 0.00 0.00 43.67 3.25
284 746 6.090223 CCGTTGGCATTTAAGAATGTTTTACC 59.910 38.462 0.00 0.00 43.67 2.85
285 747 6.864165 TCCGTTGGCATTTAAGAATGTTTTAC 59.136 34.615 0.00 0.00 43.67 2.01
286 748 6.982852 TCCGTTGGCATTTAAGAATGTTTTA 58.017 32.000 0.00 0.00 43.67 1.52
295 757 3.065019 CGGATTCCGTTGGCATTTAAG 57.935 47.619 17.08 0.00 42.73 1.85
314 776 7.752695 AGCTCTGTCTTTATTTGGTATTTTCG 58.247 34.615 0.00 0.00 0.00 3.46
315 777 8.184848 GGAGCTCTGTCTTTATTTGGTATTTTC 58.815 37.037 14.64 0.00 0.00 2.29
316 778 7.669722 TGGAGCTCTGTCTTTATTTGGTATTTT 59.330 33.333 14.64 0.00 0.00 1.82
317 779 7.175104 TGGAGCTCTGTCTTTATTTGGTATTT 58.825 34.615 14.64 0.00 0.00 1.40
318 780 6.721318 TGGAGCTCTGTCTTTATTTGGTATT 58.279 36.000 14.64 0.00 0.00 1.89
319 781 6.313519 TGGAGCTCTGTCTTTATTTGGTAT 57.686 37.500 14.64 0.00 0.00 2.73
320 782 5.755409 TGGAGCTCTGTCTTTATTTGGTA 57.245 39.130 14.64 0.00 0.00 3.25
321 783 4.640771 TGGAGCTCTGTCTTTATTTGGT 57.359 40.909 14.64 0.00 0.00 3.67
322 784 4.337555 CCATGGAGCTCTGTCTTTATTTGG 59.662 45.833 14.64 2.75 0.00 3.28
323 785 5.188434 TCCATGGAGCTCTGTCTTTATTTG 58.812 41.667 11.44 0.00 0.00 2.32
324 786 5.435291 CTCCATGGAGCTCTGTCTTTATTT 58.565 41.667 28.45 0.00 35.31 1.40
325 787 4.141528 CCTCCATGGAGCTCTGTCTTTATT 60.142 45.833 32.97 0.00 40.69 1.40
326 788 3.390639 CCTCCATGGAGCTCTGTCTTTAT 59.609 47.826 32.97 0.00 40.69 1.40
327 789 2.768527 CCTCCATGGAGCTCTGTCTTTA 59.231 50.000 32.97 0.00 40.69 1.85
328 790 1.558756 CCTCCATGGAGCTCTGTCTTT 59.441 52.381 32.97 0.00 40.69 2.52
329 791 1.202330 CCTCCATGGAGCTCTGTCTT 58.798 55.000 32.97 0.00 40.69 3.01
330 792 1.336632 GCCTCCATGGAGCTCTGTCT 61.337 60.000 32.97 0.00 40.69 3.41
331 793 1.145819 GCCTCCATGGAGCTCTGTC 59.854 63.158 32.97 14.41 40.69 3.51
332 794 2.373707 GGCCTCCATGGAGCTCTGT 61.374 63.158 32.97 0.00 40.69 3.41
333 795 1.633915 AAGGCCTCCATGGAGCTCTG 61.634 60.000 32.97 21.23 40.69 3.35
334 796 0.918310 AAAGGCCTCCATGGAGCTCT 60.918 55.000 32.97 26.77 40.69 4.09
335 797 0.839946 TAAAGGCCTCCATGGAGCTC 59.160 55.000 32.97 25.21 40.69 4.09
336 798 1.527457 ATAAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
337 799 2.363359 CAAATAAAGGCCTCCATGGAGC 59.637 50.000 32.97 26.44 40.69 4.70
338 800 3.902218 TCAAATAAAGGCCTCCATGGAG 58.098 45.455 31.69 31.69 41.63 3.86
339 801 4.329638 TTCAAATAAAGGCCTCCATGGA 57.670 40.909 15.27 15.27 38.35 3.41
340 802 5.046376 AGTTTTCAAATAAAGGCCTCCATGG 60.046 40.000 5.23 4.97 39.35 3.66
341 803 6.041423 AGTTTTCAAATAAAGGCCTCCATG 57.959 37.500 5.23 1.29 0.00 3.66
342 804 6.269769 TGAAGTTTTCAAATAAAGGCCTCCAT 59.730 34.615 5.23 0.00 36.59 3.41
343 805 5.600484 TGAAGTTTTCAAATAAAGGCCTCCA 59.400 36.000 5.23 0.00 36.59 3.86
344 806 6.096673 TGAAGTTTTCAAATAAAGGCCTCC 57.903 37.500 5.23 0.00 36.59 4.30
418 880 8.993121 GCACACATGTAAATTATGTATCTAGCT 58.007 33.333 0.00 0.00 36.67 3.32
419 881 8.773645 TGCACACATGTAAATTATGTATCTAGC 58.226 33.333 0.00 0.00 36.67 3.42
432 894 6.344500 ACCAGAAAATTTGCACACATGTAAA 58.656 32.000 0.00 0.00 43.40 2.01
433 895 5.911752 ACCAGAAAATTTGCACACATGTAA 58.088 33.333 0.00 0.00 0.00 2.41
434 896 5.527951 GACCAGAAAATTTGCACACATGTA 58.472 37.500 0.00 0.00 0.00 2.29
435 897 4.370917 GACCAGAAAATTTGCACACATGT 58.629 39.130 0.00 0.00 0.00 3.21
436 898 3.426191 CGACCAGAAAATTTGCACACATG 59.574 43.478 0.00 0.00 0.00 3.21
437 899 3.317711 TCGACCAGAAAATTTGCACACAT 59.682 39.130 0.00 0.00 0.00 3.21
438 900 2.685388 TCGACCAGAAAATTTGCACACA 59.315 40.909 0.00 0.00 0.00 3.72
439 901 3.347958 TCGACCAGAAAATTTGCACAC 57.652 42.857 0.00 0.00 0.00 3.82
440 902 4.377839 TTTCGACCAGAAAATTTGCACA 57.622 36.364 0.00 0.00 45.05 4.57
484 946 9.967346 GCTAAAAAGTCCTAGATTTGTCTTTTT 57.033 29.630 14.58 14.58 43.03 1.94
485 947 9.131791 TGCTAAAAAGTCCTAGATTTGTCTTTT 57.868 29.630 0.00 0.00 36.92 2.27
486 948 8.691661 TGCTAAAAAGTCCTAGATTTGTCTTT 57.308 30.769 0.00 0.00 0.00 2.52
487 949 8.870075 ATGCTAAAAAGTCCTAGATTTGTCTT 57.130 30.769 0.00 0.00 0.00 3.01
490 952 9.686683 ACATATGCTAAAAAGTCCTAGATTTGT 57.313 29.630 1.58 0.00 0.00 2.83
494 956 9.988815 CAGTACATATGCTAAAAAGTCCTAGAT 57.011 33.333 1.58 0.00 0.00 1.98
495 957 8.978472 ACAGTACATATGCTAAAAAGTCCTAGA 58.022 33.333 1.58 0.00 0.00 2.43
496 958 9.601217 AACAGTACATATGCTAAAAAGTCCTAG 57.399 33.333 1.58 0.00 0.00 3.02
497 959 9.595823 GAACAGTACATATGCTAAAAAGTCCTA 57.404 33.333 1.58 0.00 0.00 2.94
498 960 8.100791 TGAACAGTACATATGCTAAAAAGTCCT 58.899 33.333 1.58 0.00 0.00 3.85
499 961 8.263940 TGAACAGTACATATGCTAAAAAGTCC 57.736 34.615 1.58 0.00 0.00 3.85
500 962 9.922305 GATGAACAGTACATATGCTAAAAAGTC 57.078 33.333 1.58 0.00 0.00 3.01
501 963 9.672673 AGATGAACAGTACATATGCTAAAAAGT 57.327 29.630 1.58 0.00 0.00 2.66
504 966 9.665719 TGAAGATGAACAGTACATATGCTAAAA 57.334 29.630 1.58 0.00 0.00 1.52
505 967 9.665719 TTGAAGATGAACAGTACATATGCTAAA 57.334 29.630 1.58 0.00 0.00 1.85
506 968 9.665719 TTTGAAGATGAACAGTACATATGCTAA 57.334 29.630 1.58 0.00 0.00 3.09
507 969 9.317936 CTTTGAAGATGAACAGTACATATGCTA 57.682 33.333 1.58 0.00 0.00 3.49
508 970 7.826252 ACTTTGAAGATGAACAGTACATATGCT 59.174 33.333 1.58 0.00 0.00 3.79
509 971 7.978982 ACTTTGAAGATGAACAGTACATATGC 58.021 34.615 1.58 0.00 0.00 3.14
510 972 9.376075 AGACTTTGAAGATGAACAGTACATATG 57.624 33.333 0.00 0.00 0.00 1.78
511 973 9.376075 CAGACTTTGAAGATGAACAGTACATAT 57.624 33.333 0.00 0.00 0.00 1.78
512 974 8.367911 ACAGACTTTGAAGATGAACAGTACATA 58.632 33.333 0.00 0.00 0.00 2.29
513 975 7.172190 CACAGACTTTGAAGATGAACAGTACAT 59.828 37.037 0.00 0.00 0.00 2.29
514 976 6.479990 CACAGACTTTGAAGATGAACAGTACA 59.520 38.462 0.00 0.00 0.00 2.90
515 977 6.701841 TCACAGACTTTGAAGATGAACAGTAC 59.298 38.462 0.00 0.00 0.00 2.73
516 978 6.816136 TCACAGACTTTGAAGATGAACAGTA 58.184 36.000 0.00 0.00 0.00 2.74
517 979 5.674525 TCACAGACTTTGAAGATGAACAGT 58.325 37.500 0.00 0.00 0.00 3.55
518 980 6.798315 ATCACAGACTTTGAAGATGAACAG 57.202 37.500 0.00 0.00 0.00 3.16
519 981 7.572523 AAATCACAGACTTTGAAGATGAACA 57.427 32.000 0.00 0.00 0.00 3.18
520 982 9.387123 GTAAAATCACAGACTTTGAAGATGAAC 57.613 33.333 0.00 0.00 0.00 3.18
521 983 9.342308 AGTAAAATCACAGACTTTGAAGATGAA 57.658 29.630 0.00 0.00 0.00 2.57
522 984 8.908786 AGTAAAATCACAGACTTTGAAGATGA 57.091 30.769 0.00 0.00 0.00 2.92
523 985 9.956720 AAAGTAAAATCACAGACTTTGAAGATG 57.043 29.630 0.00 0.00 39.90 2.90
556 1018 0.455633 CACCTTGAATTGCGAGCTGC 60.456 55.000 0.00 0.00 46.70 5.25
557 1019 0.877071 ACACCTTGAATTGCGAGCTG 59.123 50.000 0.00 0.00 0.00 4.24
558 1020 1.609208 AACACCTTGAATTGCGAGCT 58.391 45.000 0.00 0.00 0.00 4.09
559 1021 2.287547 TGAAACACCTTGAATTGCGAGC 60.288 45.455 0.00 0.00 0.00 5.03
560 1022 3.624326 TGAAACACCTTGAATTGCGAG 57.376 42.857 0.00 0.00 0.00 5.03
561 1023 3.856638 GCATGAAACACCTTGAATTGCGA 60.857 43.478 0.00 0.00 0.00 5.10
562 1024 2.409378 GCATGAAACACCTTGAATTGCG 59.591 45.455 0.00 0.00 0.00 4.85
563 1025 3.430895 CAGCATGAAACACCTTGAATTGC 59.569 43.478 0.00 0.00 39.69 3.56
564 1026 4.873817 TCAGCATGAAACACCTTGAATTG 58.126 39.130 0.00 0.00 45.97 2.32
578 1040 7.381948 GTGTATGTGTGAAAATTTTCAGCATGA 59.618 33.333 33.71 25.38 46.80 3.07
579 1041 7.383029 AGTGTATGTGTGAAAATTTTCAGCATG 59.617 33.333 33.71 0.00 46.80 4.06
580 1042 7.436118 AGTGTATGTGTGAAAATTTTCAGCAT 58.564 30.769 31.59 31.59 46.80 3.79
581 1043 6.804677 AGTGTATGTGTGAAAATTTTCAGCA 58.195 32.000 29.34 27.73 46.80 4.41
582 1044 7.698836 AAGTGTATGTGTGAAAATTTTCAGC 57.301 32.000 29.34 24.08 46.80 4.26
587 1049 9.691362 GGATGTAAAGTGTATGTGTGAAAATTT 57.309 29.630 0.00 0.00 0.00 1.82
588 1050 9.077885 AGGATGTAAAGTGTATGTGTGAAAATT 57.922 29.630 0.00 0.00 0.00 1.82
589 1051 8.635765 AGGATGTAAAGTGTATGTGTGAAAAT 57.364 30.769 0.00 0.00 0.00 1.82
590 1052 8.349245 CAAGGATGTAAAGTGTATGTGTGAAAA 58.651 33.333 0.00 0.00 0.00 2.29
591 1053 7.521423 GCAAGGATGTAAAGTGTATGTGTGAAA 60.521 37.037 0.00 0.00 0.00 2.69
592 1054 6.072728 GCAAGGATGTAAAGTGTATGTGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
593 1055 5.411361 GCAAGGATGTAAAGTGTATGTGTGA 59.589 40.000 0.00 0.00 0.00 3.58
594 1056 5.181056 TGCAAGGATGTAAAGTGTATGTGTG 59.819 40.000 0.00 0.00 0.00 3.82
595 1057 5.312895 TGCAAGGATGTAAAGTGTATGTGT 58.687 37.500 0.00 0.00 0.00 3.72
596 1058 5.878332 TGCAAGGATGTAAAGTGTATGTG 57.122 39.130 0.00 0.00 0.00 3.21
597 1059 7.109501 TGTATGCAAGGATGTAAAGTGTATGT 58.890 34.615 0.00 0.00 0.00 2.29
598 1060 7.552458 TGTATGCAAGGATGTAAAGTGTATG 57.448 36.000 0.00 0.00 0.00 2.39
599 1061 7.775093 ACATGTATGCAAGGATGTAAAGTGTAT 59.225 33.333 0.00 0.00 0.00 2.29
600 1062 7.065683 CACATGTATGCAAGGATGTAAAGTGTA 59.934 37.037 0.00 0.00 0.00 2.90
601 1063 5.945784 ACATGTATGCAAGGATGTAAAGTGT 59.054 36.000 0.00 0.00 0.00 3.55
602 1064 6.127925 ACACATGTATGCAAGGATGTAAAGTG 60.128 38.462 0.00 0.00 0.00 3.16
603 1065 5.945784 ACACATGTATGCAAGGATGTAAAGT 59.054 36.000 0.00 1.15 0.00 2.66
604 1066 6.441093 ACACATGTATGCAAGGATGTAAAG 57.559 37.500 0.00 0.66 0.00 1.85
605 1067 8.518430 AATACACATGTATGCAAGGATGTAAA 57.482 30.769 0.00 1.34 40.78 2.01
606 1068 8.518430 AAATACACATGTATGCAAGGATGTAA 57.482 30.769 0.00 1.61 40.78 2.41
607 1069 8.404765 CAAAATACACATGTATGCAAGGATGTA 58.595 33.333 0.00 4.93 40.78 2.29
608 1070 7.093814 ACAAAATACACATGTATGCAAGGATGT 60.094 33.333 0.00 0.00 40.78 3.06
609 1071 7.259882 ACAAAATACACATGTATGCAAGGATG 58.740 34.615 0.00 0.00 40.78 3.51
610 1072 7.122501 TGACAAAATACACATGTATGCAAGGAT 59.877 33.333 0.00 0.00 40.78 3.24
611 1073 6.432472 TGACAAAATACACATGTATGCAAGGA 59.568 34.615 0.00 0.00 40.78 3.36
612 1074 6.619744 TGACAAAATACACATGTATGCAAGG 58.380 36.000 0.00 0.00 40.78 3.61
613 1075 7.529158 TCTGACAAAATACACATGTATGCAAG 58.471 34.615 0.00 0.00 40.78 4.01
614 1076 7.446001 TCTGACAAAATACACATGTATGCAA 57.554 32.000 0.00 0.00 40.78 4.08
615 1077 7.446001 TTCTGACAAAATACACATGTATGCA 57.554 32.000 0.00 0.00 40.78 3.96
616 1078 8.915871 AATTCTGACAAAATACACATGTATGC 57.084 30.769 0.00 0.00 40.78 3.14
667 1129 7.748241 CGAAGCCTTTTTGTTTTGAAAAATTCA 59.252 29.630 0.00 0.00 34.97 2.57
668 1130 7.748683 ACGAAGCCTTTTTGTTTTGAAAAATTC 59.251 29.630 0.00 0.00 34.97 2.17
669 1131 7.536964 CACGAAGCCTTTTTGTTTTGAAAAATT 59.463 29.630 0.00 0.00 34.97 1.82
670 1132 7.020602 CACGAAGCCTTTTTGTTTTGAAAAAT 58.979 30.769 0.00 0.00 34.97 1.82
671 1133 6.202954 TCACGAAGCCTTTTTGTTTTGAAAAA 59.797 30.769 0.00 0.00 34.44 1.94
672 1134 5.696724 TCACGAAGCCTTTTTGTTTTGAAAA 59.303 32.000 0.00 0.00 0.00 2.29
673 1135 5.230942 TCACGAAGCCTTTTTGTTTTGAAA 58.769 33.333 0.00 0.00 0.00 2.69
674 1136 4.810790 TCACGAAGCCTTTTTGTTTTGAA 58.189 34.783 0.00 0.00 0.00 2.69
675 1137 4.442375 TCACGAAGCCTTTTTGTTTTGA 57.558 36.364 0.00 0.00 0.00 2.69
676 1138 5.129901 CTTCACGAAGCCTTTTTGTTTTG 57.870 39.130 0.00 0.00 0.00 2.44
689 1151 1.335964 TGAAGACGGAGCTTCACGAAG 60.336 52.381 12.37 2.29 46.73 3.79
690 1152 0.671796 TGAAGACGGAGCTTCACGAA 59.328 50.000 12.37 0.00 46.73 3.85
691 1153 2.337361 TGAAGACGGAGCTTCACGA 58.663 52.632 12.37 0.00 46.73 4.35
692 1154 4.966005 TGAAGACGGAGCTTCACG 57.034 55.556 11.87 0.00 46.73 4.35
695 1157 3.120165 GGACATTTTGAAGACGGAGCTTC 60.120 47.826 7.68 7.68 43.53 3.86
696 1158 2.814336 GGACATTTTGAAGACGGAGCTT 59.186 45.455 0.00 0.00 0.00 3.74
697 1159 2.039084 AGGACATTTTGAAGACGGAGCT 59.961 45.455 0.00 0.00 0.00 4.09
698 1160 2.427506 AGGACATTTTGAAGACGGAGC 58.572 47.619 0.00 0.00 0.00 4.70
699 1161 4.822026 AGTAGGACATTTTGAAGACGGAG 58.178 43.478 0.00 0.00 0.00 4.63
700 1162 4.617530 CGAGTAGGACATTTTGAAGACGGA 60.618 45.833 0.00 0.00 0.00 4.69
701 1163 3.612860 CGAGTAGGACATTTTGAAGACGG 59.387 47.826 0.00 0.00 0.00 4.79
702 1164 4.323868 GTCGAGTAGGACATTTTGAAGACG 59.676 45.833 0.00 0.00 36.91 4.18
703 1165 4.323868 CGTCGAGTAGGACATTTTGAAGAC 59.676 45.833 0.00 0.00 36.73 3.01
704 1166 4.482386 CGTCGAGTAGGACATTTTGAAGA 58.518 43.478 0.00 0.00 36.73 2.87
705 1167 3.612860 CCGTCGAGTAGGACATTTTGAAG 59.387 47.826 0.00 0.00 36.73 3.02
706 1168 3.256383 TCCGTCGAGTAGGACATTTTGAA 59.744 43.478 0.00 0.00 36.73 2.69
707 1169 2.821378 TCCGTCGAGTAGGACATTTTGA 59.179 45.455 0.00 0.00 36.73 2.69
708 1170 3.226346 TCCGTCGAGTAGGACATTTTG 57.774 47.619 0.00 0.00 36.73 2.44
709 1171 3.947910 TTCCGTCGAGTAGGACATTTT 57.052 42.857 3.93 0.00 36.73 1.82
710 1172 3.446161 TGATTCCGTCGAGTAGGACATTT 59.554 43.478 3.93 0.00 36.73 2.32
711 1173 3.021695 TGATTCCGTCGAGTAGGACATT 58.978 45.455 3.93 0.00 36.73 2.71
712 1174 2.651455 TGATTCCGTCGAGTAGGACAT 58.349 47.619 3.93 2.60 36.73 3.06
713 1175 2.118313 TGATTCCGTCGAGTAGGACA 57.882 50.000 3.93 0.00 36.73 4.02
714 1176 3.066342 TCAATGATTCCGTCGAGTAGGAC 59.934 47.826 3.93 0.00 36.06 3.85
715 1177 3.284617 TCAATGATTCCGTCGAGTAGGA 58.715 45.455 0.00 0.53 34.19 2.94
716 1178 3.710326 TCAATGATTCCGTCGAGTAGG 57.290 47.619 0.00 0.00 0.00 3.18
717 1179 5.859114 CCTATTCAATGATTCCGTCGAGTAG 59.141 44.000 0.00 0.00 0.00 2.57
718 1180 5.278808 CCCTATTCAATGATTCCGTCGAGTA 60.279 44.000 0.00 0.00 0.00 2.59
719 1181 4.501571 CCCTATTCAATGATTCCGTCGAGT 60.502 45.833 0.00 0.00 0.00 4.18
720 1182 3.990469 CCCTATTCAATGATTCCGTCGAG 59.010 47.826 0.00 0.00 0.00 4.04
721 1183 3.802329 GCCCTATTCAATGATTCCGTCGA 60.802 47.826 0.00 0.00 0.00 4.20
722 1184 2.480419 GCCCTATTCAATGATTCCGTCG 59.520 50.000 0.00 0.00 0.00 5.12
723 1185 3.476552 TGCCCTATTCAATGATTCCGTC 58.523 45.455 0.00 0.00 0.00 4.79
724 1186 3.576078 TGCCCTATTCAATGATTCCGT 57.424 42.857 0.00 0.00 0.00 4.69
725 1187 4.520111 TGATTGCCCTATTCAATGATTCCG 59.480 41.667 0.00 0.00 34.59 4.30
726 1188 6.600882 ATGATTGCCCTATTCAATGATTCC 57.399 37.500 0.00 0.00 34.59 3.01
727 1189 7.663827 TGAATGATTGCCCTATTCAATGATTC 58.336 34.615 15.77 15.77 45.81 2.52
728 1190 7.606135 TGAATGATTGCCCTATTCAATGATT 57.394 32.000 0.00 1.24 39.33 2.57
729 1191 7.792364 ATGAATGATTGCCCTATTCAATGAT 57.208 32.000 0.00 0.00 42.20 2.45
730 1192 7.606135 AATGAATGATTGCCCTATTCAATGA 57.394 32.000 0.00 0.00 42.20 2.57
731 1193 9.938280 ATAAATGAATGATTGCCCTATTCAATG 57.062 29.630 0.00 0.00 42.20 2.82
738 1200 6.073276 CGACGAATAAATGAATGATTGCCCTA 60.073 38.462 0.00 0.00 0.00 3.53
740 1202 4.911610 CGACGAATAAATGAATGATTGCCC 59.088 41.667 0.00 0.00 0.00 5.36
755 1217 3.732219 GGACGTATTTCATGCGACGAATA 59.268 43.478 0.00 0.00 40.98 1.75
790 1278 5.240891 ACAAAGATACGCCTATCATCATGG 58.759 41.667 5.65 0.00 32.36 3.66
799 1287 5.637810 CAGACAGAAAACAAAGATACGCCTA 59.362 40.000 0.00 0.00 0.00 3.93
868 1379 5.163281 TGGGAAGGCGTTATTAGTTTGTA 57.837 39.130 0.00 0.00 0.00 2.41
900 1411 3.791973 TTGGAGCAACAAAAATCGTGT 57.208 38.095 0.00 0.00 0.00 4.49
916 1433 2.430704 CTGCTTCTGGGCCCTTTGGA 62.431 60.000 25.70 13.01 0.00 3.53
968 1494 1.745827 GCGAGGGTGCTTATAAAGGCA 60.746 52.381 0.00 0.00 36.01 4.75
996 1522 3.633094 CTGTGCTGGTCTCCGTCCG 62.633 68.421 0.00 0.00 0.00 4.79
1041 1585 2.202878 CCGCCGTAGACCATGGTG 60.203 66.667 25.52 8.65 42.62 4.17
1065 1609 2.432456 TACTGTTGCCTCAGCGCG 60.432 61.111 0.00 0.00 44.31 6.86
1076 1620 0.172803 GTCGCCGATGGAGTACTGTT 59.827 55.000 0.00 0.00 0.00 3.16
1077 1621 1.807886 GTCGCCGATGGAGTACTGT 59.192 57.895 0.00 0.00 0.00 3.55
1165 1709 1.672356 CCTTGGGCGTGGTCTTCAG 60.672 63.158 0.00 0.00 0.00 3.02
1626 2170 1.004918 CCACACGTCCACCTTCTCC 60.005 63.158 0.00 0.00 0.00 3.71
1781 2325 2.440980 GCATCAGGTCCTTGGCCC 60.441 66.667 0.00 0.00 0.00 5.80
1866 2410 4.624913 TCAGGGGATCACTCATAGTTCTT 58.375 43.478 0.00 0.00 0.00 2.52
1867 2411 4.271807 TCAGGGGATCACTCATAGTTCT 57.728 45.455 0.00 0.00 0.00 3.01
1869 2413 4.039730 CGATTCAGGGGATCACTCATAGTT 59.960 45.833 0.00 0.00 0.00 2.24
1872 2416 3.844640 TCGATTCAGGGGATCACTCATA 58.155 45.455 0.00 0.00 0.00 2.15
1873 2417 2.682594 TCGATTCAGGGGATCACTCAT 58.317 47.619 0.00 0.00 0.00 2.90
1877 2435 4.734695 GCATTTTTCGATTCAGGGGATCAC 60.735 45.833 0.00 0.00 0.00 3.06
1878 2436 3.381272 GCATTTTTCGATTCAGGGGATCA 59.619 43.478 0.00 0.00 0.00 2.92
1904 2462 0.752009 AGCTATCAACTCGAGGGCGA 60.752 55.000 18.41 10.17 45.71 5.54
1917 2477 3.046390 CGATCCAGAAACGTCAGCTATC 58.954 50.000 0.00 0.00 0.00 2.08
1918 2478 2.223829 CCGATCCAGAAACGTCAGCTAT 60.224 50.000 0.00 0.00 0.00 2.97
1920 2480 0.108615 CCGATCCAGAAACGTCAGCT 60.109 55.000 0.00 0.00 0.00 4.24
1963 2523 2.107750 CCGCAGCTCGTGATCCAT 59.892 61.111 5.15 0.00 36.19 3.41
1970 2530 3.695606 ATGTCCACCGCAGCTCGT 61.696 61.111 5.15 0.00 36.19 4.18
1993 2553 1.097547 ATCCATTTCTTCAGCCCGCG 61.098 55.000 0.00 0.00 0.00 6.46
2020 2580 1.634459 AGATGGATCATGGATGGAGCC 59.366 52.381 0.00 0.00 41.18 4.70
2021 2581 2.040012 ACAGATGGATCATGGATGGAGC 59.960 50.000 0.00 0.00 0.00 4.70
2022 2582 4.776308 TCTACAGATGGATCATGGATGGAG 59.224 45.833 0.00 0.00 0.00 3.86
2023 2583 4.755437 TCTACAGATGGATCATGGATGGA 58.245 43.478 0.00 0.00 0.00 3.41
2025 2585 7.657023 TCTATCTACAGATGGATCATGGATG 57.343 40.000 1.49 0.00 37.17 3.51
2026 2586 8.121185 TCTTCTATCTACAGATGGATCATGGAT 58.879 37.037 6.17 0.00 40.84 3.41
2027 2587 7.473593 TCTTCTATCTACAGATGGATCATGGA 58.526 38.462 6.17 0.00 40.84 3.41
2028 2588 7.715266 TCTTCTATCTACAGATGGATCATGG 57.285 40.000 6.17 0.00 40.84 3.66
2030 2590 9.772605 AAGATCTTCTATCTACAGATGGATCAT 57.227 33.333 0.88 2.42 40.84 2.45
2059 2629 2.951745 CCGTCGTCTCATCTGCGC 60.952 66.667 0.00 0.00 0.00 6.09
2061 2631 1.587613 GAGCCGTCGTCTCATCTGC 60.588 63.158 0.00 0.00 0.00 4.26
2066 2636 1.272490 AGAAATTGAGCCGTCGTCTCA 59.728 47.619 1.05 1.05 38.67 3.27
2069 2639 0.095417 GCAGAAATTGAGCCGTCGTC 59.905 55.000 0.00 0.00 0.00 4.20
2070 2640 1.298859 GGCAGAAATTGAGCCGTCGT 61.299 55.000 0.93 0.00 38.86 4.34
2071 2641 1.425428 GGCAGAAATTGAGCCGTCG 59.575 57.895 0.93 0.00 38.86 5.12
2076 2646 1.806542 TCAACGAGGCAGAAATTGAGC 59.193 47.619 0.00 0.00 0.00 4.26
2080 2678 3.942829 TGAGATCAACGAGGCAGAAATT 58.057 40.909 0.00 0.00 0.00 1.82
2087 2685 1.863267 CAGGATGAGATCAACGAGGC 58.137 55.000 0.00 0.00 39.69 4.70
2088 2686 1.539929 GGCAGGATGAGATCAACGAGG 60.540 57.143 0.00 0.00 39.69 4.63
2089 2687 1.137675 TGGCAGGATGAGATCAACGAG 59.862 52.381 0.00 0.00 39.69 4.18
2090 2688 1.137675 CTGGCAGGATGAGATCAACGA 59.862 52.381 6.61 0.00 39.69 3.85
2091 2689 1.579698 CTGGCAGGATGAGATCAACG 58.420 55.000 6.61 0.00 39.69 4.10
2092 2690 1.307097 GCTGGCAGGATGAGATCAAC 58.693 55.000 17.64 0.00 39.69 3.18
2093 2691 0.913924 TGCTGGCAGGATGAGATCAA 59.086 50.000 17.64 0.00 39.69 2.57
2094 2692 0.913924 TTGCTGGCAGGATGAGATCA 59.086 50.000 17.64 0.00 39.69 2.92
2095 2693 2.048444 TTTGCTGGCAGGATGAGATC 57.952 50.000 17.64 0.00 39.69 2.75
2096 2694 2.693591 CAATTTGCTGGCAGGATGAGAT 59.306 45.455 17.64 2.96 39.69 2.75
2097 2695 2.097036 CAATTTGCTGGCAGGATGAGA 58.903 47.619 17.64 0.00 39.69 3.27
2098 2696 1.136305 CCAATTTGCTGGCAGGATGAG 59.864 52.381 17.64 4.09 39.69 2.90
2099 2697 1.187974 CCAATTTGCTGGCAGGATGA 58.812 50.000 17.64 5.83 39.69 2.92
2100 2698 3.752796 CCAATTTGCTGGCAGGATG 57.247 52.632 17.64 8.88 40.87 3.51
2109 2707 1.203052 CTTGTCCATCGCCAATTTGCT 59.797 47.619 0.00 0.00 0.00 3.91
2116 2714 1.741401 CGCTTCTTGTCCATCGCCA 60.741 57.895 0.00 0.00 0.00 5.69
2127 2725 2.594592 GCACCACCACCGCTTCTT 60.595 61.111 0.00 0.00 0.00 2.52
2134 2732 4.265056 AACTCCGGCACCACCACC 62.265 66.667 0.00 0.00 39.03 4.61
2136 2734 3.164977 TGAACTCCGGCACCACCA 61.165 61.111 0.00 0.00 39.03 4.17
2152 2750 4.407818 CGCTACTTCTACTGACTGAACTG 58.592 47.826 0.00 0.00 0.00 3.16
2169 2773 3.770666 TCACAGACTGAATTAGCGCTAC 58.229 45.455 18.63 6.61 0.00 3.58
2178 2782 5.794894 ACCTTAAACGATCACAGACTGAAT 58.205 37.500 10.08 2.02 30.60 2.57
2182 2786 3.504906 TCGACCTTAAACGATCACAGACT 59.495 43.478 0.00 0.00 33.62 3.24
2183 2787 3.829948 TCGACCTTAAACGATCACAGAC 58.170 45.455 0.00 0.00 33.62 3.51
2186 2790 3.571571 CACTCGACCTTAAACGATCACA 58.428 45.455 0.00 0.00 37.86 3.58
2193 2797 2.140717 CACCACCACTCGACCTTAAAC 58.859 52.381 0.00 0.00 0.00 2.01
2198 2802 2.122989 ACCACCACCACTCGACCT 60.123 61.111 0.00 0.00 0.00 3.85
2201 2805 2.445085 ACCACCACCACCACTCGA 60.445 61.111 0.00 0.00 0.00 4.04
2202 2806 2.280797 CACCACCACCACCACTCG 60.281 66.667 0.00 0.00 0.00 4.18
2204 2808 1.531748 CTTCACCACCACCACCACT 59.468 57.895 0.00 0.00 0.00 4.00
2205 2809 2.193536 GCTTCACCACCACCACCAC 61.194 63.158 0.00 0.00 0.00 4.16
2207 2811 0.321653 CTAGCTTCACCACCACCACC 60.322 60.000 0.00 0.00 0.00 4.61
2208 2812 0.685097 TCTAGCTTCACCACCACCAC 59.315 55.000 0.00 0.00 0.00 4.16
2209 2813 1.429930 TTCTAGCTTCACCACCACCA 58.570 50.000 0.00 0.00 0.00 4.17
2213 2817 2.421424 CTGCAATTCTAGCTTCACCACC 59.579 50.000 0.00 0.00 0.00 4.61
2225 2830 3.494332 AGGTGAAAGCTTCTGCAATTCT 58.506 40.909 0.00 0.00 46.63 2.40
2247 2852 0.886490 AAACAGGTTCAGGCTCAGCG 60.886 55.000 0.00 0.00 0.00 5.18
2248 2853 0.595095 CAAACAGGTTCAGGCTCAGC 59.405 55.000 0.00 0.00 0.00 4.26
2249 2854 1.972872 ACAAACAGGTTCAGGCTCAG 58.027 50.000 0.00 0.00 0.00 3.35
2338 2972 4.217497 GCCGACTACTTAAGCACTATACG 58.783 47.826 1.29 0.33 0.00 3.06
2339 2973 5.008415 TCTGCCGACTACTTAAGCACTATAC 59.992 44.000 1.29 0.00 0.00 1.47
2340 2974 5.128205 TCTGCCGACTACTTAAGCACTATA 58.872 41.667 1.29 0.00 0.00 1.31
2341 2975 3.952323 TCTGCCGACTACTTAAGCACTAT 59.048 43.478 1.29 0.00 0.00 2.12
2344 2978 2.094649 ACTCTGCCGACTACTTAAGCAC 60.095 50.000 1.29 0.00 0.00 4.40
2346 2980 2.943449 ACTCTGCCGACTACTTAAGC 57.057 50.000 1.29 0.00 0.00 3.09
2347 2981 4.557205 ACAAACTCTGCCGACTACTTAAG 58.443 43.478 0.00 0.00 0.00 1.85
2348 2982 4.595762 ACAAACTCTGCCGACTACTTAA 57.404 40.909 0.00 0.00 0.00 1.85
2355 2989 1.295792 TGTGAACAAACTCTGCCGAC 58.704 50.000 0.00 0.00 0.00 4.79
2356 2990 1.939934 CTTGTGAACAAACTCTGCCGA 59.060 47.619 0.00 0.00 35.15 5.54
2357 2991 1.939934 TCTTGTGAACAAACTCTGCCG 59.060 47.619 0.00 0.00 35.15 5.69
2373 3007 5.964887 TTTTTGCTCCATTTTCGTTCTTG 57.035 34.783 0.00 0.00 0.00 3.02
2441 3077 4.393062 CGCAGAATCAATGACAGGTTAAGT 59.607 41.667 0.00 0.00 0.00 2.24
2442 3078 4.393062 ACGCAGAATCAATGACAGGTTAAG 59.607 41.667 0.00 0.00 0.00 1.85
2448 3084 1.736126 AGCACGCAGAATCAATGACAG 59.264 47.619 0.00 0.00 0.00 3.51
2449 3085 1.812235 AGCACGCAGAATCAATGACA 58.188 45.000 0.00 0.00 0.00 3.58
2451 3087 1.739466 GGAAGCACGCAGAATCAATGA 59.261 47.619 0.00 0.00 0.00 2.57
2455 3091 0.250252 TGTGGAAGCACGCAGAATCA 60.250 50.000 0.00 0.00 0.00 2.57
2456 3092 0.874390 TTGTGGAAGCACGCAGAATC 59.126 50.000 0.00 0.00 31.76 2.52
2460 3096 1.009675 GTGTTGTGGAAGCACGCAG 60.010 57.895 0.00 0.00 31.76 5.18
2462 3098 1.160329 AGAGTGTTGTGGAAGCACGC 61.160 55.000 0.00 0.00 38.10 5.34
2463 3099 1.299541 AAGAGTGTTGTGGAAGCACG 58.700 50.000 0.00 0.00 38.10 5.34
2514 3150 7.158021 CAGACTTGTAGAGACCTCTGAATTTT 58.842 38.462 9.65 0.00 40.71 1.82
2525 3161 4.565962 CACATCATGCAGACTTGTAGAGAC 59.434 45.833 0.00 0.00 0.00 3.36
2544 3180 4.240888 CGTGAGAAGACAAGACATCACAT 58.759 43.478 0.00 0.00 37.50 3.21
2560 3203 0.400213 AAATGTTCAGCCCCGTGAGA 59.600 50.000 0.00 0.00 0.00 3.27
2610 3253 2.568090 GTCCGTTTAGGGTCGCGA 59.432 61.111 3.71 3.71 41.52 5.87
2662 3305 0.037697 CCGGACACGACTCCAAATCA 60.038 55.000 0.00 0.00 44.60 2.57
2670 3313 2.711922 GGCAGATCCGGACACGACT 61.712 63.158 6.12 0.00 44.60 4.18
2683 3326 3.329889 ACCGCATTCCAGGGCAGA 61.330 61.111 0.00 0.00 0.00 4.26
2843 3486 2.817834 GCTGTGTTGCCGGCGATA 60.818 61.111 21.90 15.61 0.00 2.92
3059 3703 2.284798 GAAGGAGATGCTCGACGCCA 62.285 60.000 4.73 0.00 38.05 5.69
3254 3898 2.025155 GGTAGCTCGACATGGAAGAGA 58.975 52.381 15.47 0.00 34.13 3.10
3316 3960 2.037620 CTTGAGATGGAGGAGGCGGG 62.038 65.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.