Multiple sequence alignment - TraesCS6A01G375600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G375600 chr6A 100.000 6824 0 0 1 6824 597856219 597863042 0.000000e+00 12602.0
1 TraesCS6A01G375600 chr6A 100.000 30 0 0 6382 6411 597862556 597862585 1.000000e-03 56.5
2 TraesCS6A01G375600 chr6A 100.000 30 0 0 6338 6367 597862600 597862629 1.000000e-03 56.5
3 TraesCS6A01G375600 chr6D 95.530 3266 126 12 2013 5270 452103156 452106409 0.000000e+00 5204.0
4 TraesCS6A01G375600 chr6D 91.382 1288 70 21 693 1970 452101899 452103155 0.000000e+00 1725.0
5 TraesCS6A01G375600 chr6D 90.994 1288 75 23 693 1970 452068720 452069976 0.000000e+00 1698.0
6 TraesCS6A01G375600 chr6D 93.290 1088 42 13 5279 6353 452106448 452107517 0.000000e+00 1576.0
7 TraesCS6A01G375600 chr6D 84.648 697 64 26 3 696 452049198 452049854 0.000000e+00 654.0
8 TraesCS6A01G375600 chr6D 82.769 325 22 13 6382 6673 452107502 452107825 6.790000e-65 259.0
9 TraesCS6A01G375600 chr6B 95.464 1433 47 8 1822 3241 686685609 686687036 0.000000e+00 2270.0
10 TraesCS6A01G375600 chr6B 95.149 1443 54 8 3284 4723 686687491 686688920 0.000000e+00 2263.0
11 TraesCS6A01G375600 chr6B 91.884 1035 47 11 777 1788 686684590 686685610 0.000000e+00 1411.0
12 TraesCS6A01G375600 chr6B 94.628 819 34 6 5279 6092 686689133 686689946 0.000000e+00 1260.0
13 TraesCS6A01G375600 chr6B 89.748 595 39 7 5323 5914 686836882 686837457 0.000000e+00 741.0
14 TraesCS6A01G375600 chr6B 84.239 736 80 15 48 776 686683859 686684565 0.000000e+00 684.0
15 TraesCS6A01G375600 chr6B 84.783 322 19 3 6382 6673 686849621 686849942 5.170000e-76 296.0
16 TraesCS6A01G375600 chr6B 92.308 182 12 2 5089 5270 686688917 686689096 2.440000e-64 257.0
17 TraesCS6A01G375600 chr6B 87.407 135 11 2 6179 6310 686689952 686690083 4.260000e-32 150.0
18 TraesCS6A01G375600 chr6B 97.015 67 2 0 6287 6353 686849570 686849636 5.590000e-21 113.0
19 TraesCS6A01G375600 chr6B 93.023 43 2 1 5051 5093 708594581 708594540 2.050000e-05 62.1
20 TraesCS6A01G375600 chr6B 100.000 32 0 0 28 59 686683809 686683840 7.390000e-05 60.2
21 TraesCS6A01G375600 chrUn 88.939 443 32 8 1276 1711 476211594 476211162 1.300000e-146 531.0
22 TraesCS6A01G375600 chr2B 83.333 372 56 3 4725 5090 643676326 643675955 8.480000e-89 339.0
23 TraesCS6A01G375600 chr2B 88.489 139 16 0 6686 6824 36781800 36781938 1.180000e-37 169.0
24 TraesCS6A01G375600 chr1A 91.429 140 12 0 6672 6811 103682251 103682390 6.980000e-45 193.0
25 TraesCS6A01G375600 chr1A 95.798 119 4 1 6665 6783 3377124 3377007 2.510000e-44 191.0
26 TraesCS6A01G375600 chr4A 90.580 138 13 0 6687 6824 517011320 517011183 4.200000e-42 183.0
27 TraesCS6A01G375600 chr7D 77.941 340 42 13 4723 5032 380632866 380633202 1.510000e-41 182.0
28 TraesCS6A01G375600 chr3B 87.500 152 19 0 6673 6824 111856965 111857116 7.030000e-40 176.0
29 TraesCS6A01G375600 chr3A 75.796 157 34 3 4933 5087 235817187 235817033 7.340000e-10 76.8
30 TraesCS6A01G375600 chr2D 95.652 46 2 0 5045 5090 459828141 459828096 2.640000e-09 75.0
31 TraesCS6A01G375600 chr5A 90.385 52 4 1 5045 5095 505030660 505030609 4.420000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G375600 chr6A 597856219 597863042 6823 False 4238.333333 12602 100.000000 1 6824 3 chr6A.!!$F1 6823
1 TraesCS6A01G375600 chr6D 452101899 452107825 5926 False 2191.000000 5204 90.742750 693 6673 4 chr6D.!!$F3 5980
2 TraesCS6A01G375600 chr6D 452068720 452069976 1256 False 1698.000000 1698 90.994000 693 1970 1 chr6D.!!$F2 1277
3 TraesCS6A01G375600 chr6D 452049198 452049854 656 False 654.000000 654 84.648000 3 696 1 chr6D.!!$F1 693
4 TraesCS6A01G375600 chr6B 686683809 686690083 6274 False 1044.400000 2270 92.634875 28 6310 8 chr6B.!!$F2 6282
5 TraesCS6A01G375600 chr6B 686836882 686837457 575 False 741.000000 741 89.748000 5323 5914 1 chr6B.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 333 0.107508 CCTCCTCGGTGCATTCATGT 60.108 55.000 0.0 0.0 0.0 3.21 F
1253 1317 0.038159 GGAAGATACGAGGGGATGCG 60.038 60.000 0.0 0.0 0.0 4.73 F
2780 2876 1.811941 GCCAAATCGAGTCCCCATCTC 60.812 57.143 0.0 0.0 0.0 2.75 F
3355 3868 1.129811 CCGCTTAACCGCTTTAGTTGG 59.870 52.381 0.0 0.0 0.0 3.77 F
4742 5258 1.139058 AGGGCATGTACTAAGGAAGCG 59.861 52.381 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 2296 0.118952 AATTGCCCACATTCCCCCTT 59.881 50.000 0.00 0.00 0.00 3.95 R
3106 3206 4.669206 AAAACATGATTGAGTTGCACCA 57.331 36.364 0.00 0.00 0.00 4.17 R
4737 5253 1.004440 AGCAGGAAGGTGACGCTTC 60.004 57.895 5.57 5.57 0.00 3.86 R
4858 5378 0.031994 GCATGCGTTGAAAAGTGGGT 59.968 50.000 0.00 0.00 0.00 4.51 R
6077 6632 0.041833 AGCCTCCTCTGCTCTACCAA 59.958 55.000 0.00 0.00 32.41 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.399245 TTTTTCTAGTGGCACAGTTAAAGTT 57.601 32.000 21.41 0.00 40.27 2.66
26 27 7.399245 TTTTCTAGTGGCACAGTTAAAGTTT 57.601 32.000 21.41 0.00 40.27 2.66
112 143 2.876581 CTAGTGAAAAGGGGCCACTTT 58.123 47.619 27.83 27.83 42.17 2.66
149 182 6.531503 AAGAGGAAATCGAGTTGACATCTA 57.468 37.500 1.32 0.00 0.00 1.98
156 189 6.516739 AATCGAGTTGACATCTAAGTGAGA 57.483 37.500 0.00 0.00 39.01 3.27
162 195 7.540474 AGTTGACATCTAAGTGAGAAACCTA 57.460 36.000 0.00 0.00 37.85 3.08
173 206 3.935828 GTGAGAAACCTAGAATGACCAGC 59.064 47.826 0.00 0.00 0.00 4.85
203 237 3.190849 CTGGCTGATGGTGACGCG 61.191 66.667 3.53 3.53 0.00 6.01
209 243 2.125512 GATGGTGACGCGGCTCTT 60.126 61.111 15.80 3.47 0.00 2.85
239 273 4.201871 ACGAAACAACGATGACATGTGTTT 60.202 37.500 1.15 15.97 37.03 2.83
247 281 2.163818 TGACATGTGTTTCTCCCGTC 57.836 50.000 1.15 0.00 0.00 4.79
294 329 4.844420 CTCCTCCTCGGTGCATTC 57.156 61.111 0.00 0.00 0.00 2.67
295 330 1.900351 CTCCTCCTCGGTGCATTCA 59.100 57.895 0.00 0.00 0.00 2.57
296 331 0.467384 CTCCTCCTCGGTGCATTCAT 59.533 55.000 0.00 0.00 0.00 2.57
297 332 0.178767 TCCTCCTCGGTGCATTCATG 59.821 55.000 0.00 0.00 0.00 3.07
298 333 0.107508 CCTCCTCGGTGCATTCATGT 60.108 55.000 0.00 0.00 0.00 3.21
299 334 1.293924 CTCCTCGGTGCATTCATGTC 58.706 55.000 0.00 0.00 0.00 3.06
300 335 0.107703 TCCTCGGTGCATTCATGTCC 60.108 55.000 0.00 0.00 0.00 4.02
301 336 0.107508 CCTCGGTGCATTCATGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
302 337 1.293924 CTCGGTGCATTCATGTCCTC 58.706 55.000 0.00 0.00 0.00 3.71
303 338 0.612744 TCGGTGCATTCATGTCCTCA 59.387 50.000 0.00 0.00 0.00 3.86
304 339 1.210234 TCGGTGCATTCATGTCCTCAT 59.790 47.619 0.00 0.00 34.21 2.90
305 340 1.600957 CGGTGCATTCATGTCCTCATC 59.399 52.381 0.00 0.00 31.15 2.92
306 341 2.646930 GGTGCATTCATGTCCTCATCA 58.353 47.619 0.00 0.00 31.15 3.07
307 342 2.617308 GGTGCATTCATGTCCTCATCAG 59.383 50.000 0.00 0.00 31.15 2.90
308 343 3.276857 GTGCATTCATGTCCTCATCAGT 58.723 45.455 0.00 0.00 31.15 3.41
309 344 3.064958 GTGCATTCATGTCCTCATCAGTG 59.935 47.826 0.00 0.00 31.15 3.66
310 345 2.033049 GCATTCATGTCCTCATCAGTGC 59.967 50.000 0.00 0.00 31.15 4.40
311 346 3.275999 CATTCATGTCCTCATCAGTGCA 58.724 45.455 0.00 0.00 31.15 4.57
312 347 2.391616 TCATGTCCTCATCAGTGCAC 57.608 50.000 9.40 9.40 31.15 4.57
313 348 1.624813 TCATGTCCTCATCAGTGCACA 59.375 47.619 21.04 0.00 31.15 4.57
314 349 2.038820 TCATGTCCTCATCAGTGCACAA 59.961 45.455 21.04 7.05 31.15 3.33
327 362 2.901840 CACAACTGGTGCGCCACT 60.902 61.111 16.89 3.24 41.36 4.00
393 428 1.868251 GAGCGGTCGACGTGATGAC 60.868 63.158 9.92 0.00 46.52 3.06
401 436 3.338126 GACGTGATGACCCGCGAGT 62.338 63.158 8.23 0.00 42.05 4.18
446 481 2.479837 CACAACAACGAGGAGCACTAA 58.520 47.619 0.00 0.00 0.00 2.24
458 493 0.838987 AGCACTAAAGGGGTCCGGAA 60.839 55.000 5.23 0.00 0.00 4.30
482 517 1.064825 CCTGGAGGTAGTTGTTGGGT 58.935 55.000 0.00 0.00 0.00 4.51
484 519 1.420138 CTGGAGGTAGTTGTTGGGTGT 59.580 52.381 0.00 0.00 0.00 4.16
501 536 4.111016 TCTCGCGCGGTGAATCGT 62.111 61.111 31.69 0.00 0.00 3.73
541 578 3.202216 TTCCTCGTTGTCTCGCGCA 62.202 57.895 8.75 0.00 0.00 6.09
558 595 2.099592 GCGCAGATGGAATTGGAATTGA 59.900 45.455 0.30 0.00 0.00 2.57
561 598 4.563976 CGCAGATGGAATTGGAATTGAAAC 59.436 41.667 0.00 0.00 0.00 2.78
592 629 2.214376 TGGAATTTCATCCAACGGCT 57.786 45.000 0.00 0.00 46.36 5.52
605 642 4.933064 CGGCTGAGGTCGATCGCC 62.933 72.222 11.09 14.99 44.06 5.54
645 682 2.430694 ACATCAAATCGACCCGAGATCA 59.569 45.455 0.00 0.00 39.91 2.92
699 736 1.605712 CGGTCCAGAATCCCTAATCGC 60.606 57.143 0.00 0.00 0.00 4.58
712 749 0.681887 TAATCGCCGTGGGAGTCTCA 60.682 55.000 1.47 0.00 0.00 3.27
730 768 5.013913 AGTCTCATGGGATGGATAATGGAAG 59.986 44.000 0.00 0.00 0.00 3.46
895 959 2.622447 CCCCCAAAATCCCCCGTCT 61.622 63.158 0.00 0.00 0.00 4.18
918 982 2.792947 ATAGATCGGCGCCCAACGT 61.793 57.895 23.46 4.36 46.11 3.99
1117 1181 1.383248 AGCAGGTCCCCTTATCGCT 60.383 57.895 0.00 0.00 0.00 4.93
1138 1202 2.655407 TCCTCCTATAGGTGATCTCCCC 59.345 54.545 20.22 0.00 46.62 4.81
1215 1279 6.918022 CGTGTCTGTGTGTCATGTATATATGT 59.082 38.462 9.06 0.00 0.00 2.29
1216 1280 7.096477 CGTGTCTGTGTGTCATGTATATATGTG 60.096 40.741 9.06 0.00 0.00 3.21
1218 1282 6.701400 GTCTGTGTGTCATGTATATATGTGCA 59.299 38.462 9.06 7.20 0.00 4.57
1220 1284 6.581712 TGTGTGTCATGTATATATGTGCAGT 58.418 36.000 9.06 0.00 0.00 4.40
1221 1285 7.721402 TGTGTGTCATGTATATATGTGCAGTA 58.279 34.615 9.06 0.00 0.00 2.74
1253 1317 0.038159 GGAAGATACGAGGGGATGCG 60.038 60.000 0.00 0.00 0.00 4.73
1280 1344 8.697507 ATCCGCTGATTATTTTTCCTCTTTAT 57.302 30.769 0.00 0.00 0.00 1.40
1416 1480 8.333908 GTGATTCTTAGTTAGCTCATGTGAATG 58.666 37.037 0.00 0.00 0.00 2.67
1544 1608 5.852282 AAAGTTGCTTGGTTATGTTCACT 57.148 34.783 0.00 0.00 0.00 3.41
1577 1641 5.302823 CAGACCCTGTTTGGAAGAAGAAAAT 59.697 40.000 0.00 0.00 38.35 1.82
1612 1679 7.745620 AGGTTTATCCATGAACGGAATATTC 57.254 36.000 6.93 6.93 38.95 1.75
1615 1682 6.779115 TTATCCATGAACGGAATATTCGTG 57.221 37.500 9.32 7.02 41.04 4.35
1651 1719 6.608002 AGTGTTTGTAACCCTTTTTCACCATA 59.392 34.615 0.00 0.00 0.00 2.74
1699 1775 3.506067 GCAAGGTAGTGTTACATGCCTTT 59.494 43.478 12.71 0.00 37.80 3.11
1733 1811 2.158755 CCCTCTTACATGGTTAGCTGGG 60.159 54.545 0.00 3.19 0.00 4.45
1740 1818 2.290960 ACATGGTTAGCTGGGGTTTCTC 60.291 50.000 0.00 0.00 0.00 2.87
1970 2056 4.441634 GGCTGCTAGATTCTCTTCGGTAAA 60.442 45.833 0.00 0.00 0.00 2.01
2081 2167 4.876679 GTCTAGTTTAGCCACCCTTCATTC 59.123 45.833 0.00 0.00 0.00 2.67
2177 2270 4.698201 TGGACATCTTTAGGTGAACACA 57.302 40.909 7.25 0.00 0.00 3.72
2311 2404 5.808540 CAGTTGCATCCATTTACATCCAAAG 59.191 40.000 0.00 0.00 0.00 2.77
2462 2557 2.434702 AGTGACAAGAGTTCCTTCGGTT 59.565 45.455 0.00 0.00 31.42 4.44
2577 2672 7.254692 CCGCTTACTTTTTAGGGCTTCTATAAC 60.255 40.741 0.00 0.00 0.00 1.89
2780 2876 1.811941 GCCAAATCGAGTCCCCATCTC 60.812 57.143 0.00 0.00 0.00 2.75
2803 2899 7.721842 TCTCGGATCTACAGAGAATAAGAATGT 59.278 37.037 0.00 0.00 44.25 2.71
2875 2971 8.879342 TCTGCTTTGCTATTTAGAATCTAGAC 57.121 34.615 0.00 0.00 0.00 2.59
2900 2996 4.626042 TGCCATGTACAAACCAAATTGTC 58.374 39.130 0.00 0.00 42.33 3.18
2952 3048 6.090898 ACGATGTTGACAAGCTAGTCATTAAC 59.909 38.462 0.00 0.00 46.90 2.01
3068 3165 7.588143 ATTATACGCTCTTCTGAATACATGC 57.412 36.000 0.00 0.00 0.00 4.06
3254 3355 7.578169 ACTCGTTTTTGCTAGTACACTTATC 57.422 36.000 0.00 0.00 0.00 1.75
3255 3356 6.589139 ACTCGTTTTTGCTAGTACACTTATCC 59.411 38.462 0.00 0.00 0.00 2.59
3256 3357 5.870978 TCGTTTTTGCTAGTACACTTATCCC 59.129 40.000 0.00 0.00 0.00 3.85
3257 3358 5.064325 CGTTTTTGCTAGTACACTTATCCCC 59.936 44.000 0.00 0.00 0.00 4.81
3258 3359 4.765813 TTTGCTAGTACACTTATCCCCC 57.234 45.455 0.00 0.00 0.00 5.40
3285 3798 4.174009 CCCTGGTAGATATAACGATTGCG 58.826 47.826 0.00 0.00 44.79 4.85
3296 3809 2.534452 CGATTGCGTAACCACCACA 58.466 52.632 0.00 0.00 0.00 4.17
3319 3832 1.244697 TGGGAGTGTCGAGCTGTCTC 61.245 60.000 0.00 0.00 35.99 3.36
3355 3868 1.129811 CCGCTTAACCGCTTTAGTTGG 59.870 52.381 0.00 0.00 0.00 3.77
3564 4077 3.983044 AGGTTACCTGAGGCTTACTTG 57.017 47.619 1.74 0.00 29.57 3.16
3565 4078 2.027100 AGGTTACCTGAGGCTTACTTGC 60.027 50.000 1.74 0.00 29.57 4.01
3619 4132 9.342308 CTGAAAGTGCCAGATATAATTTAGGAA 57.658 33.333 0.00 0.00 33.65 3.36
3622 4135 9.566432 AAAGTGCCAGATATAATTTAGGAAGAG 57.434 33.333 0.00 0.00 0.00 2.85
3667 4180 3.057526 GCTACTTGCTCGGTTCCAATTTT 60.058 43.478 0.00 0.00 38.95 1.82
3746 4259 7.992754 ATTCAGAGTAGCAGAATTTGTTCTT 57.007 32.000 0.00 0.00 29.46 2.52
3817 4330 2.766313 TCACTGCACTGACATGTAACC 58.234 47.619 0.00 0.00 0.00 2.85
3837 4350 2.949644 CCTATTGACGGGAATGAAACCC 59.050 50.000 0.00 0.00 43.57 4.11
3916 4431 4.036734 TCTGTCACCTGTCAATTGAAAAGC 59.963 41.667 10.35 0.00 0.00 3.51
3937 4452 3.285745 CGTGCTAACGTCTTTTTGTTCC 58.714 45.455 0.00 0.00 44.93 3.62
4277 4792 6.982724 TCTGTATTCAACACTATGCTGATGAG 59.017 38.462 0.00 0.00 33.45 2.90
4287 4802 6.432783 ACACTATGCTGATGAGAGGTATAGTC 59.567 42.308 0.00 0.00 30.02 2.59
4394 4909 9.255304 TCAATATTTTCTTTTGCAAAGTACACC 57.745 29.630 12.41 0.00 0.00 4.16
4405 4920 6.952773 TGCAAAGTACACCTCATTAACTTT 57.047 33.333 0.00 0.00 40.13 2.66
4683 5198 7.236019 TCCTTAGATCATAAACCGGCCTTAATA 59.764 37.037 0.00 0.00 0.00 0.98
4737 5253 6.426646 AGAATCTTAGGGCATGTACTAAGG 57.573 41.667 25.11 14.40 43.89 2.69
4742 5258 1.139058 AGGGCATGTACTAAGGAAGCG 59.861 52.381 0.00 0.00 0.00 4.68
4770 5286 2.125350 GCTGCCTCACCTCTTCCG 60.125 66.667 0.00 0.00 0.00 4.30
4858 5378 6.642950 GTCGTCATCTTTCTTTTTCTCTCTCA 59.357 38.462 0.00 0.00 0.00 3.27
4901 5421 1.672356 CCAAGCCGTGGTCCTGAAG 60.672 63.158 0.00 0.00 43.20 3.02
4903 5423 3.883744 AAGCCGTGGTCCTGAAGCG 62.884 63.158 0.00 0.00 0.00 4.68
4914 5434 0.527385 CCTGAAGCGAGCAGAGCTAC 60.527 60.000 0.00 0.00 45.31 3.58
4931 5451 3.064931 GCTACGAAGCTTACACAACCTT 58.935 45.455 0.00 0.00 45.85 3.50
4935 5455 1.269723 GAAGCTTACACAACCTTGCCC 59.730 52.381 0.00 0.00 0.00 5.36
4941 5461 4.250305 ACAACCTTGCCCGAGCGT 62.250 61.111 0.00 0.00 44.31 5.07
4951 5471 4.421479 CCGAGCGTCTGCCTCGTT 62.421 66.667 9.54 0.00 44.31 3.85
4961 5481 0.662619 CTGCCTCGTTGCTTTTGTCA 59.337 50.000 1.05 0.00 0.00 3.58
4963 5483 0.944386 GCCTCGTTGCTTTTGTCAGA 59.056 50.000 0.00 0.00 0.00 3.27
4995 5515 1.001406 CTCTTCTGCAGGAGTCCGTTT 59.999 52.381 21.69 0.00 0.00 3.60
5002 5522 1.273886 GCAGGAGTCCGTTTCTCTCTT 59.726 52.381 2.76 0.00 33.06 2.85
5020 5540 1.865788 TTCAAGCAGCATGTTCGGCC 61.866 55.000 0.00 0.00 39.31 6.13
5177 5697 3.459828 TCCAACCACTCATCCCTTCATA 58.540 45.455 0.00 0.00 0.00 2.15
5210 5730 3.181475 TGGGATGAAGTAGAGTCGATTGC 60.181 47.826 0.00 0.00 0.00 3.56
5241 5761 7.755373 GGGAAATTAGAACTGTAGTTTGCATTC 59.245 37.037 0.00 2.04 38.56 2.67
5252 5772 6.375377 TGTAGTTTGCATTCGTAACCATTTC 58.625 36.000 0.00 0.00 0.00 2.17
5257 5777 8.952278 AGTTTGCATTCGTAACCATTTCTATTA 58.048 29.630 0.00 0.00 0.00 0.98
5284 5834 1.681166 GCATCATGTTGAGAGTGGGCT 60.681 52.381 7.98 0.00 0.00 5.19
5349 5899 6.578023 AGGTCTACTCTCACAATGCTTAATC 58.422 40.000 0.00 0.00 0.00 1.75
5362 5912 7.491372 CACAATGCTTAATCTACTAAGGTCGAA 59.509 37.037 0.00 0.00 30.79 3.71
5374 5924 0.252103 AGGTCGAACTCAAGGGCCTA 60.252 55.000 6.41 0.00 0.00 3.93
5378 5928 1.017387 CGAACTCAAGGGCCTAATGC 58.983 55.000 6.41 0.00 40.16 3.56
5401 5953 2.874701 CGGGCTTATTCACATTGGAGAG 59.125 50.000 0.00 0.00 0.00 3.20
5402 5955 3.217626 GGGCTTATTCACATTGGAGAGG 58.782 50.000 0.00 0.00 0.00 3.69
5405 5958 3.217626 CTTATTCACATTGGAGAGGCCC 58.782 50.000 0.00 0.00 34.97 5.80
5406 5959 1.302907 ATTCACATTGGAGAGGCCCT 58.697 50.000 0.00 0.00 34.97 5.19
5409 5962 1.839994 TCACATTGGAGAGGCCCTAAG 59.160 52.381 0.00 0.00 34.97 2.18
5410 5963 0.548510 ACATTGGAGAGGCCCTAAGC 59.451 55.000 0.00 0.00 42.60 3.09
5411 5964 0.842635 CATTGGAGAGGCCCTAAGCT 59.157 55.000 0.00 0.00 43.05 3.74
5442 5995 1.881973 GTCATGTTTTCTGCTGGCTCA 59.118 47.619 0.00 0.00 0.00 4.26
5456 6009 2.756760 CTGGCTCATATTGTGCACCTTT 59.243 45.455 15.69 1.15 38.50 3.11
5505 6058 3.376234 CACTGCTTGTCATAACTCATGGG 59.624 47.826 0.00 0.00 35.16 4.00
5922 6475 1.000233 GTAAGTCAGTCGCGCGAACA 61.000 55.000 36.57 18.48 0.00 3.18
5999 6553 1.597027 CCGACTGCCCTGTTTTCGT 60.597 57.895 0.00 0.00 0.00 3.85
6044 6598 3.068024 ACGCAAGATGTTGATTGGTTGTT 59.932 39.130 6.80 0.00 43.62 2.83
6048 6602 5.590145 CAAGATGTTGATTGGTTGTTGTGA 58.410 37.500 0.00 0.00 35.46 3.58
6049 6603 5.850557 AGATGTTGATTGGTTGTTGTGAA 57.149 34.783 0.00 0.00 0.00 3.18
6099 6654 1.075674 TAGAGCAGAGGAGGCTGGG 60.076 63.158 0.00 0.00 42.78 4.45
6100 6655 4.173924 GAGCAGAGGAGGCTGGGC 62.174 72.222 0.00 0.00 42.78 5.36
6102 6657 4.486503 GCAGAGGAGGCTGGGCAG 62.487 72.222 0.00 0.00 36.41 4.85
6105 6660 4.106925 GAGGAGGCTGGGCAGTGG 62.107 72.222 0.00 0.00 0.00 4.00
6138 6693 3.307480 GGGCTGTAGTAGTGTGTGGAAAT 60.307 47.826 0.00 0.00 0.00 2.17
6153 6708 4.782019 TGGAAATCCAACAAGCATGTAC 57.218 40.909 0.00 0.00 44.35 2.90
6154 6709 3.190327 TGGAAATCCAACAAGCATGTACG 59.810 43.478 0.00 0.00 44.35 3.67
6172 6727 0.585357 CGATGTACGTACTCGGAGGG 59.415 60.000 26.18 9.84 41.85 4.30
6173 6728 0.310232 GATGTACGTACTCGGAGGGC 59.690 60.000 25.12 0.64 41.85 5.19
6174 6729 0.394762 ATGTACGTACTCGGAGGGCA 60.395 55.000 25.12 3.33 41.85 5.36
6175 6730 1.308069 TGTACGTACTCGGAGGGCAC 61.308 60.000 25.12 3.55 41.85 5.01
6176 6731 1.028868 GTACGTACTCGGAGGGCACT 61.029 60.000 18.47 0.00 41.85 4.40
6177 6732 0.541392 TACGTACTCGGAGGGCACTA 59.459 55.000 10.23 0.00 41.85 2.74
6182 6737 2.365105 TCGGAGGGCACTAAGGGG 60.365 66.667 0.00 0.00 0.00 4.79
6244 6799 8.834465 TGAATCATAGCTAAGAAATGAAGCTTC 58.166 33.333 19.89 19.89 43.97 3.86
6250 6805 7.608308 AGCTAAGAAATGAAGCTTCTACAAG 57.392 36.000 26.09 14.68 43.97 3.16
6254 6812 7.622893 AAGAAATGAAGCTTCTACAAGGATC 57.377 36.000 26.09 12.80 32.77 3.36
6277 6835 1.866015 TCGACTCCCATGACAAGGAT 58.134 50.000 0.00 0.00 0.00 3.24
6327 6890 3.002042 GTGAATGCACTCTTGGATGATCG 59.998 47.826 0.00 0.00 41.84 3.69
6345 6908 9.166173 GGATGATCGTAATTCAAATATCCATGA 57.834 33.333 0.00 0.00 0.00 3.07
6358 6921 9.300681 TCAAATATCCATGAGAATTATCCAACC 57.699 33.333 0.00 0.00 0.00 3.77
6359 6922 9.081204 CAAATATCCATGAGAATTATCCAACCA 57.919 33.333 0.00 0.00 0.00 3.67
6360 6923 9.833179 AAATATCCATGAGAATTATCCAACCAT 57.167 29.630 0.00 0.00 0.00 3.55
6361 6924 8.818622 ATATCCATGAGAATTATCCAACCATG 57.181 34.615 0.00 0.00 0.00 3.66
6362 6925 6.017211 TCCATGAGAATTATCCAACCATGT 57.983 37.500 0.00 0.00 0.00 3.21
6363 6926 6.064060 TCCATGAGAATTATCCAACCATGTC 58.936 40.000 0.00 0.00 0.00 3.06
6364 6927 6.066690 CCATGAGAATTATCCAACCATGTCT 58.933 40.000 0.00 0.00 0.00 3.41
6365 6928 6.548622 CCATGAGAATTATCCAACCATGTCTT 59.451 38.462 0.00 0.00 0.00 3.01
6366 6929 7.423199 CATGAGAATTATCCAACCATGTCTTG 58.577 38.462 0.00 0.00 0.00 3.02
6380 6943 6.867662 CCATGTCTTGGGAGAATTATGTAC 57.132 41.667 0.00 0.00 42.33 2.90
6381 6944 6.595682 CCATGTCTTGGGAGAATTATGTACT 58.404 40.000 0.00 0.00 42.33 2.73
6382 6945 7.735917 CCATGTCTTGGGAGAATTATGTACTA 58.264 38.462 0.00 0.00 42.33 1.82
6383 6946 8.378565 CCATGTCTTGGGAGAATTATGTACTAT 58.621 37.037 0.00 0.00 42.33 2.12
6384 6947 9.429359 CATGTCTTGGGAGAATTATGTACTATC 57.571 37.037 0.00 0.00 32.66 2.08
6385 6948 7.963532 TGTCTTGGGAGAATTATGTACTATCC 58.036 38.462 0.00 0.00 32.66 2.59
6386 6949 7.567250 TGTCTTGGGAGAATTATGTACTATCCA 59.433 37.037 0.00 0.00 32.66 3.41
6387 6950 8.598041 GTCTTGGGAGAATTATGTACTATCCAT 58.402 37.037 0.00 0.00 32.66 3.41
6388 6951 8.597167 TCTTGGGAGAATTATGTACTATCCATG 58.403 37.037 0.00 0.00 0.00 3.66
6389 6952 8.504811 TTGGGAGAATTATGTACTATCCATGA 57.495 34.615 0.00 0.00 0.00 3.07
6390 6953 8.138928 TGGGAGAATTATGTACTATCCATGAG 57.861 38.462 0.00 0.00 0.00 2.90
6391 6954 7.955750 TGGGAGAATTATGTACTATCCATGAGA 59.044 37.037 0.00 0.00 0.00 3.27
6392 6955 8.816894 GGGAGAATTATGTACTATCCATGAGAA 58.183 37.037 0.00 0.00 0.00 2.87
6401 6964 9.950496 ATGTACTATCCATGAGAATTATCCAAC 57.050 33.333 0.00 0.00 0.00 3.77
6402 6965 8.375506 TGTACTATCCATGAGAATTATCCAACC 58.624 37.037 0.00 0.00 0.00 3.77
6403 6966 7.392766 ACTATCCATGAGAATTATCCAACCA 57.607 36.000 0.00 0.00 0.00 3.67
6404 6967 7.993416 ACTATCCATGAGAATTATCCAACCAT 58.007 34.615 0.00 0.00 0.00 3.55
6405 6968 7.886970 ACTATCCATGAGAATTATCCAACCATG 59.113 37.037 0.00 0.00 0.00 3.66
6406 6969 6.017211 TCCATGAGAATTATCCAACCATGT 57.983 37.500 0.00 0.00 0.00 3.21
6432 6995 9.498176 TCTTGTGTGATATCCATGAGAATTATG 57.502 33.333 0.00 0.00 0.00 1.90
6463 7028 9.884636 ACTACTACATAAATATTGTGTGCTCAA 57.115 29.630 13.99 0.00 35.68 3.02
6469 7034 2.162319 TATTGTGTGCTCAAGTGCGA 57.838 45.000 0.00 0.00 35.36 5.10
6498 7063 6.816134 AAGGCAAACAACAATTTTCAGTTT 57.184 29.167 0.00 0.00 33.09 2.66
6502 7067 5.616658 CAAACAACAATTTTCAGTTTGCGT 58.383 33.333 0.00 0.00 41.43 5.24
6503 7068 6.756176 CAAACAACAATTTTCAGTTTGCGTA 58.244 32.000 0.00 0.00 41.43 4.42
6507 7072 7.452231 ACAACAATTTTCAGTTTGCGTAAAAG 58.548 30.769 0.00 0.00 0.00 2.27
6511 7076 8.166066 ACAATTTTCAGTTTGCGTAAAAGAAAC 58.834 29.630 19.79 2.95 34.54 2.78
6512 7077 5.918387 TTTCAGTTTGCGTAAAAGAAACG 57.082 34.783 17.61 0.00 43.12 3.60
6576 7168 8.207521 ACAAATTTAAAACATGTCTTTGGTGG 57.792 30.769 0.00 0.00 0.00 4.61
6598 7190 3.945640 AAGACCAACCAGTTACACCTT 57.054 42.857 0.00 0.00 0.00 3.50
6601 7193 3.712733 AGACCAACCAGTTACACCTTACA 59.287 43.478 0.00 0.00 0.00 2.41
6612 7204 7.390718 CCAGTTACACCTTACAAAAGAATAGCT 59.609 37.037 0.00 0.00 34.37 3.32
6617 7209 6.812160 ACACCTTACAAAAGAATAGCTAGTCG 59.188 38.462 15.01 4.15 34.37 4.18
6649 7241 0.171903 GCTGTTTCATGCGCATTCCT 59.828 50.000 22.81 0.00 0.00 3.36
6657 7249 1.267806 CATGCGCATTCCTGTAATCCC 59.732 52.381 22.81 0.00 0.00 3.85
6668 7260 4.547671 TCCTGTAATCCCTTCGAGATCTT 58.452 43.478 0.00 0.00 0.00 2.40
6673 7265 3.550437 ATCCCTTCGAGATCTTGTTGG 57.450 47.619 9.87 12.08 0.00 3.77
6674 7266 2.536066 TCCCTTCGAGATCTTGTTGGA 58.464 47.619 18.97 15.29 0.00 3.53
6675 7267 2.903784 TCCCTTCGAGATCTTGTTGGAA 59.096 45.455 18.97 8.75 0.00 3.53
6676 7268 3.003480 CCCTTCGAGATCTTGTTGGAAC 58.997 50.000 18.97 0.00 0.00 3.62
6677 7269 3.003480 CCTTCGAGATCTTGTTGGAACC 58.997 50.000 9.87 0.00 0.00 3.62
6678 7270 2.363788 TCGAGATCTTGTTGGAACCG 57.636 50.000 9.87 0.00 0.00 4.44
6679 7271 1.067142 TCGAGATCTTGTTGGAACCGG 60.067 52.381 9.87 0.00 0.00 5.28
6680 7272 1.067142 CGAGATCTTGTTGGAACCGGA 60.067 52.381 9.46 0.00 0.00 5.14
6681 7273 2.418746 CGAGATCTTGTTGGAACCGGAT 60.419 50.000 9.46 0.00 0.00 4.18
6682 7274 3.198872 GAGATCTTGTTGGAACCGGATC 58.801 50.000 9.46 5.54 36.78 3.36
6683 7275 2.092914 AGATCTTGTTGGAACCGGATCC 60.093 50.000 23.33 23.33 36.98 3.36
6684 7276 1.358152 TCTTGTTGGAACCGGATCCT 58.642 50.000 28.84 0.91 40.35 3.24
6685 7277 1.278127 TCTTGTTGGAACCGGATCCTC 59.722 52.381 28.84 21.43 40.35 3.71
6686 7278 1.279271 CTTGTTGGAACCGGATCCTCT 59.721 52.381 28.84 0.00 40.35 3.69
6687 7279 2.241281 TGTTGGAACCGGATCCTCTA 57.759 50.000 28.84 13.54 40.35 2.43
6688 7280 2.542550 TGTTGGAACCGGATCCTCTAA 58.457 47.619 28.84 14.22 40.35 2.10
6689 7281 2.235402 TGTTGGAACCGGATCCTCTAAC 59.765 50.000 28.84 23.72 40.35 2.34
6690 7282 2.235402 GTTGGAACCGGATCCTCTAACA 59.765 50.000 28.84 7.20 40.35 2.41
6691 7283 2.759355 TGGAACCGGATCCTCTAACAT 58.241 47.619 28.84 0.00 40.35 2.71
6692 7284 3.918566 TGGAACCGGATCCTCTAACATA 58.081 45.455 28.84 5.71 40.35 2.29
6693 7285 3.640029 TGGAACCGGATCCTCTAACATAC 59.360 47.826 28.84 1.66 40.35 2.39
6694 7286 3.640029 GGAACCGGATCCTCTAACATACA 59.360 47.826 22.87 0.00 36.50 2.29
6695 7287 4.501058 GGAACCGGATCCTCTAACATACAC 60.501 50.000 22.87 0.00 36.50 2.90
6696 7288 3.638860 ACCGGATCCTCTAACATACACA 58.361 45.455 9.46 0.00 0.00 3.72
6697 7289 4.028131 ACCGGATCCTCTAACATACACAA 58.972 43.478 9.46 0.00 0.00 3.33
6698 7290 4.468510 ACCGGATCCTCTAACATACACAAA 59.531 41.667 9.46 0.00 0.00 2.83
6699 7291 5.050490 CCGGATCCTCTAACATACACAAAG 58.950 45.833 10.75 0.00 0.00 2.77
6700 7292 5.050490 CGGATCCTCTAACATACACAAAGG 58.950 45.833 10.75 0.00 0.00 3.11
6701 7293 5.163447 CGGATCCTCTAACATACACAAAGGA 60.163 44.000 10.75 0.00 36.00 3.36
6702 7294 6.463049 CGGATCCTCTAACATACACAAAGGAT 60.463 42.308 10.75 0.77 43.16 3.24
6703 7295 6.708054 GGATCCTCTAACATACACAAAGGATG 59.292 42.308 3.84 0.00 41.14 3.51
6704 7296 6.620877 TCCTCTAACATACACAAAGGATGT 57.379 37.500 0.00 0.00 45.34 3.06
6705 7297 7.016153 TCCTCTAACATACACAAAGGATGTT 57.984 36.000 10.24 10.24 41.46 2.71
6706 7298 8.141298 TCCTCTAACATACACAAAGGATGTTA 57.859 34.615 11.27 11.27 41.46 2.41
6707 7299 8.258007 TCCTCTAACATACACAAAGGATGTTAG 58.742 37.037 24.34 24.34 41.46 2.34
6708 7300 7.495934 CCTCTAACATACACAAAGGATGTTAGG 59.504 40.741 27.29 20.70 41.46 2.69
6709 7301 7.335627 TCTAACATACACAAAGGATGTTAGGG 58.664 38.462 27.29 13.34 41.46 3.53
6710 7302 5.772393 ACATACACAAAGGATGTTAGGGA 57.228 39.130 0.00 0.00 41.46 4.20
6711 7303 6.134535 ACATACACAAAGGATGTTAGGGAA 57.865 37.500 0.00 0.00 41.46 3.97
6712 7304 6.180472 ACATACACAAAGGATGTTAGGGAAG 58.820 40.000 0.00 0.00 41.46 3.46
6713 7305 3.421844 ACACAAAGGATGTTAGGGAAGC 58.578 45.455 0.00 0.00 41.46 3.86
6714 7306 3.074538 ACACAAAGGATGTTAGGGAAGCT 59.925 43.478 0.00 0.00 41.46 3.74
6715 7307 4.288626 ACACAAAGGATGTTAGGGAAGCTA 59.711 41.667 0.00 0.00 41.46 3.32
6716 7308 4.636206 CACAAAGGATGTTAGGGAAGCTAC 59.364 45.833 0.00 0.00 41.46 3.58
6717 7309 4.288626 ACAAAGGATGTTAGGGAAGCTACA 59.711 41.667 0.00 0.00 40.06 2.74
6718 7310 5.044846 ACAAAGGATGTTAGGGAAGCTACAT 60.045 40.000 0.00 0.00 40.06 2.29
6719 7311 5.717119 AAGGATGTTAGGGAAGCTACATT 57.283 39.130 0.00 0.00 31.76 2.71
6720 7312 5.041191 AGGATGTTAGGGAAGCTACATTG 57.959 43.478 0.00 0.00 31.76 2.82
6721 7313 4.475016 AGGATGTTAGGGAAGCTACATTGT 59.525 41.667 0.00 0.00 31.76 2.71
6722 7314 4.816925 GGATGTTAGGGAAGCTACATTGTC 59.183 45.833 0.00 0.00 31.76 3.18
6723 7315 4.216411 TGTTAGGGAAGCTACATTGTCC 57.784 45.455 0.00 0.00 0.00 4.02
6724 7316 3.844211 TGTTAGGGAAGCTACATTGTCCT 59.156 43.478 0.00 0.00 0.00 3.85
6725 7317 5.027460 TGTTAGGGAAGCTACATTGTCCTA 58.973 41.667 0.00 0.00 0.00 2.94
6726 7318 5.486063 TGTTAGGGAAGCTACATTGTCCTAA 59.514 40.000 7.85 7.85 34.28 2.69
6727 7319 4.489306 AGGGAAGCTACATTGTCCTAAC 57.511 45.455 0.00 0.00 0.00 2.34
6728 7320 4.104831 AGGGAAGCTACATTGTCCTAACT 58.895 43.478 0.00 0.00 0.00 2.24
6729 7321 4.536489 AGGGAAGCTACATTGTCCTAACTT 59.464 41.667 0.00 0.00 0.00 2.66
6730 7322 5.014228 AGGGAAGCTACATTGTCCTAACTTT 59.986 40.000 0.00 0.00 0.00 2.66
6731 7323 5.710567 GGGAAGCTACATTGTCCTAACTTTT 59.289 40.000 0.00 0.00 0.00 2.27
6732 7324 6.127980 GGGAAGCTACATTGTCCTAACTTTTC 60.128 42.308 0.00 0.00 0.00 2.29
6733 7325 6.655425 GGAAGCTACATTGTCCTAACTTTTCT 59.345 38.462 0.00 0.00 0.00 2.52
6734 7326 7.175119 GGAAGCTACATTGTCCTAACTTTTCTT 59.825 37.037 0.00 0.00 0.00 2.52
6735 7327 8.465273 AAGCTACATTGTCCTAACTTTTCTTT 57.535 30.769 0.00 0.00 0.00 2.52
6736 7328 8.465273 AGCTACATTGTCCTAACTTTTCTTTT 57.535 30.769 0.00 0.00 0.00 2.27
6737 7329 8.352942 AGCTACATTGTCCTAACTTTTCTTTTG 58.647 33.333 0.00 0.00 0.00 2.44
6738 7330 8.135529 GCTACATTGTCCTAACTTTTCTTTTGT 58.864 33.333 0.00 0.00 0.00 2.83
6745 7337 9.191479 TGTCCTAACTTTTCTTTTGTTAATCCA 57.809 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.582667 ACTTTAACTGTGCCACTAGAAAAAT 57.417 32.000 0.00 0.00 0.00 1.82
1 2 7.399245 AACTTTAACTGTGCCACTAGAAAAA 57.601 32.000 0.00 0.00 0.00 1.94
6 7 7.441458 AGTTCTAAACTTTAACTGTGCCACTAG 59.559 37.037 0.00 0.00 39.04 2.57
112 143 9.884636 TCGATTTCCTCTTATTTTGTAGATTGA 57.115 29.630 0.00 0.00 0.00 2.57
149 182 5.799213 CTGGTCATTCTAGGTTTCTCACTT 58.201 41.667 0.00 0.00 0.00 3.16
156 189 2.093447 CCTCGCTGGTCATTCTAGGTTT 60.093 50.000 0.00 0.00 0.00 3.27
162 195 1.333636 CCTCCCTCGCTGGTCATTCT 61.334 60.000 0.00 0.00 0.00 2.40
173 206 4.247380 GCCAGCCATCCTCCCTCG 62.247 72.222 0.00 0.00 0.00 4.63
203 237 1.000955 TGTTTCGTCAGGAGAAGAGCC 59.999 52.381 0.00 0.00 33.82 4.70
209 243 2.295070 TCATCGTTGTTTCGTCAGGAGA 59.705 45.455 0.00 0.00 0.00 3.71
239 273 0.468214 CTCCATGCCTAGACGGGAGA 60.468 60.000 10.00 0.00 46.38 3.71
247 281 0.324285 GGAGGATGCTCCATGCCTAG 59.676 60.000 27.03 0.00 42.86 3.02
284 319 0.612744 TGAGGACATGAATGCACCGA 59.387 50.000 0.00 0.00 34.35 4.69
292 327 2.038820 TGTGCACTGATGAGGACATGAA 59.961 45.455 19.41 0.00 36.82 2.57
293 328 1.624813 TGTGCACTGATGAGGACATGA 59.375 47.619 19.41 0.00 36.82 3.07
294 329 2.103537 TGTGCACTGATGAGGACATG 57.896 50.000 19.41 0.00 36.82 3.21
295 330 2.039480 AGTTGTGCACTGATGAGGACAT 59.961 45.455 19.41 0.00 35.47 3.06
296 331 1.417517 AGTTGTGCACTGATGAGGACA 59.582 47.619 19.41 0.00 32.83 4.02
297 332 2.175878 AGTTGTGCACTGATGAGGAC 57.824 50.000 19.41 4.11 32.83 3.85
376 411 2.178521 GTCATCACGTCGACCGCT 59.821 61.111 10.58 0.00 41.42 5.52
384 419 2.927580 AACTCGCGGGTCATCACGT 61.928 57.895 14.43 0.00 43.08 4.49
393 428 2.513897 GAATCCCCAACTCGCGGG 60.514 66.667 3.27 3.27 44.07 6.13
401 436 1.303236 CACACCTGCGAATCCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
446 481 2.359011 GCCAATTCCGGACCCCTT 59.641 61.111 1.83 0.00 0.00 3.95
454 489 0.179045 CTACCTCCAGGCCAATTCCG 60.179 60.000 5.01 0.00 39.32 4.30
458 493 1.372501 ACAACTACCTCCAGGCCAAT 58.627 50.000 5.01 0.00 39.32 3.16
482 517 2.506217 GATTCACCGCGCGAGACA 60.506 61.111 34.63 17.97 0.00 3.41
484 519 2.642249 CTACGATTCACCGCGCGAGA 62.642 60.000 34.63 25.42 0.00 4.04
541 578 7.738847 ACAAAGTTTCAATTCCAATTCCATCT 58.261 30.769 0.00 0.00 0.00 2.90
558 595 7.388460 TGAAATTCCAATTGCAACAAAGTTT 57.612 28.000 0.00 0.00 31.04 2.66
561 598 6.205076 TGGATGAAATTCCAATTGCAACAAAG 59.795 34.615 0.00 0.00 42.82 2.77
589 626 4.933064 CGGCGATCGACCTCAGCC 62.933 72.222 21.57 7.42 44.00 4.85
592 629 2.266376 CTTCACGGCGATCGACCTCA 62.266 60.000 21.57 0.00 42.43 3.86
605 642 2.542178 TGTGAACCGTTTGATCTTCACG 59.458 45.455 14.78 10.40 43.61 4.35
621 658 2.232696 TCTCGGGTCGATTTGATGTGAA 59.767 45.455 0.00 0.00 34.61 3.18
645 682 0.385751 CCATGCGATACTGACCGTCT 59.614 55.000 0.00 0.00 0.00 4.18
699 736 1.050988 ATCCCATGAGACTCCCACGG 61.051 60.000 0.00 0.00 0.00 4.94
712 749 6.204555 ACAAAACTTCCATTATCCATCCCAT 58.795 36.000 0.00 0.00 0.00 4.00
730 768 3.309682 GCTTTCTGGGCTGAAAACAAAAC 59.690 43.478 7.39 0.00 35.79 2.43
757 795 2.919494 GCTGCTTTGGTGGAACGGG 61.919 63.158 0.00 0.00 38.12 5.28
895 959 1.110518 TGGGCGCCGATCTATGTGTA 61.111 55.000 22.54 0.00 0.00 2.90
946 1010 2.107953 GAGCAGATCTGGCCGGAC 59.892 66.667 23.89 0.56 0.00 4.79
1215 1279 8.958060 ATCTTCCCTACTCTTTATATACTGCA 57.042 34.615 0.00 0.00 0.00 4.41
1220 1284 9.902684 CCTCGTATCTTCCCTACTCTTTATATA 57.097 37.037 0.00 0.00 0.00 0.86
1221 1285 7.835181 CCCTCGTATCTTCCCTACTCTTTATAT 59.165 40.741 0.00 0.00 0.00 0.86
1253 1317 6.625873 AGAGGAAAAATAATCAGCGGATTC 57.374 37.500 15.61 1.35 42.66 2.52
1341 1405 3.181418 ACAACCATGAGGAGACCCAAAAT 60.181 43.478 0.00 0.00 38.69 1.82
1544 1608 3.576982 CCAAACAGGGTCTGAGTAGTACA 59.423 47.826 2.52 0.00 35.18 2.90
1577 1641 8.956426 GTTCATGGATAAACCTTGTTTCAGATA 58.044 33.333 0.00 0.00 42.29 1.98
1599 1666 6.566141 TGAATAGACACGAATATTCCGTTCA 58.434 36.000 9.87 8.73 37.52 3.18
1612 1679 5.907197 ACAAACACTTCTGAATAGACACG 57.093 39.130 0.00 0.00 31.21 4.49
1615 1682 6.935208 AGGGTTACAAACACTTCTGAATAGAC 59.065 38.462 0.00 0.00 44.36 2.59
1715 1793 2.557869 ACCCCAGCTAACCATGTAAGA 58.442 47.619 0.00 0.00 0.00 2.10
1733 1811 3.933332 CACGATCCAAACTAGGAGAAACC 59.067 47.826 0.00 0.00 41.90 3.27
1740 1818 2.422597 TGTTGCACGATCCAAACTAGG 58.577 47.619 0.00 0.00 0.00 3.02
1848 1934 4.916249 CAGTACGAGACTTGGTGTTTAGAC 59.084 45.833 0.00 0.00 35.64 2.59
1970 2056 5.568620 AAAAAGTATCTCACTGGTCAGGT 57.431 39.130 2.87 0.00 37.63 4.00
2001 2087 0.957395 CAAAGTGGACGAGCAGCCAT 60.957 55.000 0.00 0.00 36.41 4.40
2081 2167 0.456221 AGTGGCGAATCTAGGACGTG 59.544 55.000 0.00 0.00 0.00 4.49
2177 2270 0.251077 CCTCTTTTGGCCTCTGCAGT 60.251 55.000 14.67 0.00 40.13 4.40
2203 2296 0.118952 AATTGCCCACATTCCCCCTT 59.881 50.000 0.00 0.00 0.00 3.95
2324 2419 5.392380 GCTTCCATATGTGTTCCTTGTTCAG 60.392 44.000 1.24 0.00 0.00 3.02
2462 2557 7.775053 AATCTTTGTAGGTTCCATGCTTTTA 57.225 32.000 0.00 0.00 0.00 1.52
2617 2712 5.510520 GGTTGCCATTGTGAGGACAAAATAA 60.511 40.000 0.00 0.00 45.23 1.40
2780 2876 6.799441 CGACATTCTTATTCTCTGTAGATCCG 59.201 42.308 0.00 0.00 0.00 4.18
2875 2971 6.397272 ACAATTTGGTTTGTACATGGCATAG 58.603 36.000 0.00 0.00 38.04 2.23
2900 2996 4.892934 AGAGGTATGGCAAAGAGAGAGTAG 59.107 45.833 0.00 0.00 0.00 2.57
2952 3048 8.058328 CAGTACAATAGCACTATGAAATGTTCG 58.942 37.037 0.00 0.00 0.00 3.95
3106 3206 4.669206 AAAACATGATTGAGTTGCACCA 57.331 36.364 0.00 0.00 0.00 4.17
3107 3207 7.384660 TCAATAAAAACATGATTGAGTTGCACC 59.615 33.333 0.00 0.00 35.26 5.01
3263 3364 4.174009 CGCAATCGTTATATCTACCAGGG 58.826 47.826 0.00 0.00 0.00 4.45
3296 3809 1.531840 AGCTCGACACTCCCACAGT 60.532 57.895 0.00 0.00 34.67 3.55
3302 3815 0.598562 TTGAGACAGCTCGACACTCC 59.401 55.000 0.00 0.00 44.33 3.85
3428 3941 7.309805 GGCAACTAATTTCATTTCCCACTAAGT 60.310 37.037 0.00 0.00 0.00 2.24
3549 4062 0.322008 GCTGCAAGTAAGCCTCAGGT 60.322 55.000 0.00 0.00 35.30 4.00
3560 4073 2.855209 AGAACATGAGAGCTGCAAGT 57.145 45.000 0.00 0.00 35.30 3.16
3562 4075 3.376234 GCATAAGAACATGAGAGCTGCAA 59.624 43.478 0.00 0.00 0.00 4.08
3563 4076 2.941064 GCATAAGAACATGAGAGCTGCA 59.059 45.455 0.00 0.00 0.00 4.41
3564 4077 3.204526 AGCATAAGAACATGAGAGCTGC 58.795 45.455 0.00 1.25 0.00 5.25
3565 4078 7.226128 TGAATAAGCATAAGAACATGAGAGCTG 59.774 37.037 0.00 0.00 0.00 4.24
3619 4132 5.763204 ACGACCACAAATAACACATTTCTCT 59.237 36.000 0.00 0.00 0.00 3.10
3622 4135 5.793457 GCTACGACCACAAATAACACATTTC 59.207 40.000 0.00 0.00 0.00 2.17
3667 4180 4.532834 AGCTAAAAGAAAGGAACACCACA 58.467 39.130 0.00 0.00 0.00 4.17
3723 4236 6.767902 ACAAGAACAAATTCTGCTACTCTGAA 59.232 34.615 0.00 0.00 44.82 3.02
3837 4350 9.023967 GGTGCATATTTAAAATTCTGCTACTTG 57.976 33.333 12.71 0.00 0.00 3.16
3936 4451 2.148916 TGTGACTCGTTAGTGCAAGG 57.851 50.000 0.00 0.00 35.56 3.61
3937 4452 5.668866 GCTTATTGTGACTCGTTAGTGCAAG 60.669 44.000 0.00 0.00 35.56 4.01
3995 4510 4.129380 TGCATCTGAGGGAATATCAAACG 58.871 43.478 0.00 0.00 0.00 3.60
4277 4792 8.951787 ACACTATCTATCATCGACTATACCTC 57.048 38.462 0.00 0.00 0.00 3.85
4394 4909 8.578308 TGCAATTGTGAGAAAAAGTTAATGAG 57.422 30.769 7.40 0.00 0.00 2.90
4405 4920 1.266718 GACGCCTGCAATTGTGAGAAA 59.733 47.619 7.40 0.00 0.00 2.52
4633 5148 1.069935 GATGCCCTTACCGCTCTCC 59.930 63.158 0.00 0.00 0.00 3.71
4737 5253 1.004440 AGCAGGAAGGTGACGCTTC 60.004 57.895 5.57 5.57 0.00 3.86
4770 5286 9.837525 CATAGCTTCATTCAAATTTATCTAGGC 57.162 33.333 0.00 0.00 0.00 3.93
4850 5370 3.492656 CGTTGAAAAGTGGGTGAGAGAGA 60.493 47.826 0.00 0.00 0.00 3.10
4858 5378 0.031994 GCATGCGTTGAAAAGTGGGT 59.968 50.000 0.00 0.00 0.00 4.51
4901 5421 2.227568 GCTTCGTAGCTCTGCTCGC 61.228 63.158 6.80 0.00 44.27 5.03
4921 5441 1.302192 GCTCGGGCAAGGTTGTGTA 60.302 57.895 0.00 0.00 38.54 2.90
4926 5446 3.626924 AGACGCTCGGGCAAGGTT 61.627 61.111 8.62 0.00 38.60 3.50
4935 5455 3.175240 CAACGAGGCAGACGCTCG 61.175 66.667 7.63 7.63 41.51 5.03
4941 5461 0.944386 GACAAAAGCAACGAGGCAGA 59.056 50.000 5.91 0.00 35.83 4.26
4951 5471 1.271054 GCCTCCTCTCTGACAAAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
4961 5481 0.751643 GAAGAGCTCGCCTCCTCTCT 60.752 60.000 8.37 0.00 41.74 3.10
4963 5483 1.037030 CAGAAGAGCTCGCCTCCTCT 61.037 60.000 8.37 2.21 41.10 3.69
4995 5515 3.332919 GAACATGCTGCTTGAAGAGAGA 58.667 45.455 20.66 0.00 0.00 3.10
5002 5522 2.334946 GGCCGAACATGCTGCTTGA 61.335 57.895 20.66 0.00 0.00 3.02
5020 5540 3.114616 CTGCTGAACGCCACCTCG 61.115 66.667 0.00 0.00 38.05 4.63
5092 5612 4.953579 GGCCCAAATAGTCCTTAAACATCA 59.046 41.667 0.00 0.00 0.00 3.07
5156 5676 1.741028 TGAAGGGATGAGTGGTTGGA 58.259 50.000 0.00 0.00 0.00 3.53
5177 5697 2.040813 ACTTCATCCCAAGAGCACATGT 59.959 45.455 0.00 0.00 0.00 3.21
5210 5730 5.816682 ACTACAGTTCTAATTTCCCTTGGG 58.183 41.667 0.00 0.00 0.00 4.12
5257 5777 5.356190 CCACTCTCAACATGATGCATAAAGT 59.644 40.000 0.00 0.00 0.00 2.66
5270 5790 1.053835 TGACCAGCCCACTCTCAACA 61.054 55.000 0.00 0.00 0.00 3.33
5272 5792 1.754745 GTGACCAGCCCACTCTCAA 59.245 57.895 0.00 0.00 0.00 3.02
5273 5793 2.574018 CGTGACCAGCCCACTCTCA 61.574 63.158 0.00 0.00 32.64 3.27
5284 5834 4.155733 CCCATAGCGGCGTGACCA 62.156 66.667 9.37 0.00 39.03 4.02
5349 5899 3.429135 GCCCTTGAGTTCGACCTTAGTAG 60.429 52.174 0.00 0.00 0.00 2.57
5374 5924 0.033601 TGTGAATAAGCCCGGGCATT 60.034 50.000 45.13 35.32 44.88 3.56
5378 5928 1.032014 CCAATGTGAATAAGCCCGGG 58.968 55.000 19.09 19.09 0.00 5.73
5401 5953 2.115291 CGGCAAAGAGCTTAGGGCC 61.115 63.158 0.00 0.00 44.79 5.80
5402 5955 2.765356 GCGGCAAAGAGCTTAGGGC 61.765 63.158 0.00 0.00 44.79 5.19
5405 5958 0.723981 GACAGCGGCAAAGAGCTTAG 59.276 55.000 1.45 0.00 42.52 2.18
5406 5959 0.034756 TGACAGCGGCAAAGAGCTTA 59.965 50.000 1.45 0.00 42.52 3.09
5409 5962 1.136147 CATGACAGCGGCAAAGAGC 59.864 57.895 1.45 0.00 44.65 4.09
5410 5963 0.877071 AACATGACAGCGGCAAAGAG 59.123 50.000 0.00 0.00 0.00 2.85
5411 5964 1.317613 AAACATGACAGCGGCAAAGA 58.682 45.000 0.00 0.00 0.00 2.52
5456 6009 6.151691 GCAACAAGAACTAAAGAATCATGCA 58.848 36.000 0.00 0.00 0.00 3.96
5613 6166 0.612229 TCTGAGCCTCCTCTGCTTTG 59.388 55.000 0.00 0.00 39.69 2.77
5922 6475 5.243426 ACAGCTTTTAACACAACACGATT 57.757 34.783 0.00 0.00 0.00 3.34
5999 6553 0.321564 AGCGGCAAGATAACACAGCA 60.322 50.000 1.45 0.00 0.00 4.41
6063 6617 9.679661 TCTGCTCTACCAACATTTTCATATTTA 57.320 29.630 0.00 0.00 0.00 1.40
6077 6632 0.041833 AGCCTCCTCTGCTCTACCAA 59.958 55.000 0.00 0.00 32.41 3.67
6099 6654 0.749454 CCCTAGTTCATGCCCACTGC 60.749 60.000 0.00 0.00 41.77 4.40
6100 6655 0.749454 GCCCTAGTTCATGCCCACTG 60.749 60.000 0.00 0.00 0.00 3.66
6102 6657 0.749454 CAGCCCTAGTTCATGCCCAC 60.749 60.000 0.00 0.00 0.00 4.61
6105 6660 1.486726 ACTACAGCCCTAGTTCATGCC 59.513 52.381 0.00 0.00 0.00 4.40
6138 6693 3.052455 ACATCGTACATGCTTGTTGGA 57.948 42.857 10.85 8.87 37.28 3.53
6153 6708 0.585357 CCCTCCGAGTACGTACATCG 59.415 60.000 26.55 26.57 46.00 3.84
6154 6709 0.310232 GCCCTCCGAGTACGTACATC 59.690 60.000 26.55 18.49 37.88 3.06
6168 6723 1.512735 AGAATCCCCTTAGTGCCCTC 58.487 55.000 0.00 0.00 0.00 4.30
6171 6726 2.409570 ACCTAGAATCCCCTTAGTGCC 58.590 52.381 0.00 0.00 0.00 5.01
6172 6727 3.454812 TGAACCTAGAATCCCCTTAGTGC 59.545 47.826 0.00 0.00 0.00 4.40
6173 6728 4.141688 GGTGAACCTAGAATCCCCTTAGTG 60.142 50.000 0.00 0.00 0.00 2.74
6174 6729 4.038633 GGTGAACCTAGAATCCCCTTAGT 58.961 47.826 0.00 0.00 0.00 2.24
6175 6730 4.299485 AGGTGAACCTAGAATCCCCTTAG 58.701 47.826 0.00 0.00 46.48 2.18
6176 6731 4.363546 AGGTGAACCTAGAATCCCCTTA 57.636 45.455 0.00 0.00 46.48 2.69
6177 6732 3.222394 AGGTGAACCTAGAATCCCCTT 57.778 47.619 0.00 0.00 46.48 3.95
6244 6799 4.827835 TGGGAGTCGAATAGATCCTTGTAG 59.172 45.833 0.00 0.00 31.48 2.74
6250 6805 3.574396 TGTCATGGGAGTCGAATAGATCC 59.426 47.826 0.00 0.00 0.00 3.36
6254 6812 3.384789 TCCTTGTCATGGGAGTCGAATAG 59.615 47.826 4.99 0.00 0.00 1.73
6277 6835 4.063998 TGTTGTATTTGTTTGGCATGCA 57.936 36.364 21.36 2.54 0.00 3.96
6358 6921 9.429359 GATAGTACATAATTCTCCCAAGACATG 57.571 37.037 0.00 0.00 0.00 3.21
6359 6922 8.598041 GGATAGTACATAATTCTCCCAAGACAT 58.402 37.037 0.00 0.00 0.00 3.06
6360 6923 7.567250 TGGATAGTACATAATTCTCCCAAGACA 59.433 37.037 0.00 0.00 0.00 3.41
6361 6924 7.963532 TGGATAGTACATAATTCTCCCAAGAC 58.036 38.462 0.00 0.00 0.00 3.01
6362 6925 8.597167 CATGGATAGTACATAATTCTCCCAAGA 58.403 37.037 0.00 0.00 0.00 3.02
6363 6926 8.597167 TCATGGATAGTACATAATTCTCCCAAG 58.403 37.037 0.00 0.00 0.00 3.61
6364 6927 8.504811 TCATGGATAGTACATAATTCTCCCAA 57.495 34.615 0.00 0.00 0.00 4.12
6365 6928 7.955750 TCTCATGGATAGTACATAATTCTCCCA 59.044 37.037 0.00 0.00 0.00 4.37
6366 6929 8.367660 TCTCATGGATAGTACATAATTCTCCC 57.632 38.462 0.00 0.00 0.00 4.30
6375 6938 9.950496 GTTGGATAATTCTCATGGATAGTACAT 57.050 33.333 0.00 0.00 0.00 2.29
6376 6939 8.375506 GGTTGGATAATTCTCATGGATAGTACA 58.624 37.037 0.00 0.00 0.00 2.90
6377 6940 8.375506 TGGTTGGATAATTCTCATGGATAGTAC 58.624 37.037 0.00 0.00 0.00 2.73
6378 6941 8.504811 TGGTTGGATAATTCTCATGGATAGTA 57.495 34.615 0.00 0.00 0.00 1.82
6379 6942 7.392766 TGGTTGGATAATTCTCATGGATAGT 57.607 36.000 0.00 0.00 0.00 2.12
6380 6943 7.886970 ACATGGTTGGATAATTCTCATGGATAG 59.113 37.037 0.00 0.00 36.00 2.08
6381 6944 7.758609 ACATGGTTGGATAATTCTCATGGATA 58.241 34.615 0.00 0.00 36.00 2.59
6382 6945 6.617538 ACATGGTTGGATAATTCTCATGGAT 58.382 36.000 0.00 0.00 36.00 3.41
6383 6946 6.017211 ACATGGTTGGATAATTCTCATGGA 57.983 37.500 0.00 0.00 36.00 3.41
6384 6947 6.066690 AGACATGGTTGGATAATTCTCATGG 58.933 40.000 0.00 0.00 36.00 3.66
6385 6948 7.067859 ACAAGACATGGTTGGATAATTCTCATG 59.932 37.037 13.02 0.00 37.23 3.07
6386 6949 7.067859 CACAAGACATGGTTGGATAATTCTCAT 59.932 37.037 13.02 0.00 0.00 2.90
6387 6950 6.375174 CACAAGACATGGTTGGATAATTCTCA 59.625 38.462 13.02 0.00 0.00 3.27
6388 6951 6.375455 ACACAAGACATGGTTGGATAATTCTC 59.625 38.462 13.02 0.00 0.00 2.87
6389 6952 6.151648 CACACAAGACATGGTTGGATAATTCT 59.848 38.462 13.02 0.00 0.00 2.40
6390 6953 6.150976 TCACACAAGACATGGTTGGATAATTC 59.849 38.462 13.02 0.00 0.00 2.17
6391 6954 6.009589 TCACACAAGACATGGTTGGATAATT 58.990 36.000 13.02 0.00 0.00 1.40
6392 6955 5.569355 TCACACAAGACATGGTTGGATAAT 58.431 37.500 13.02 0.00 0.00 1.28
6393 6956 4.979335 TCACACAAGACATGGTTGGATAA 58.021 39.130 13.02 0.00 0.00 1.75
6394 6957 4.632327 TCACACAAGACATGGTTGGATA 57.368 40.909 13.02 0.00 0.00 2.59
6395 6958 3.507162 TCACACAAGACATGGTTGGAT 57.493 42.857 13.02 0.47 0.00 3.41
6396 6959 3.507162 ATCACACAAGACATGGTTGGA 57.493 42.857 13.02 3.53 0.00 3.53
6397 6960 4.336433 GGATATCACACAAGACATGGTTGG 59.664 45.833 13.02 6.18 0.00 3.77
6398 6961 4.943093 TGGATATCACACAAGACATGGTTG 59.057 41.667 4.83 8.18 0.00 3.77
6399 6962 5.178096 TGGATATCACACAAGACATGGTT 57.822 39.130 4.83 0.00 0.00 3.67
6400 6963 4.842531 TGGATATCACACAAGACATGGT 57.157 40.909 4.83 0.00 0.00 3.55
6401 6964 5.370679 TCATGGATATCACACAAGACATGG 58.629 41.667 4.83 0.00 36.16 3.66
6402 6965 6.285990 TCTCATGGATATCACACAAGACATG 58.714 40.000 4.83 6.53 36.66 3.21
6403 6966 6.490241 TCTCATGGATATCACACAAGACAT 57.510 37.500 4.83 0.00 0.00 3.06
6404 6967 5.937975 TCTCATGGATATCACACAAGACA 57.062 39.130 4.83 0.00 0.00 3.41
6405 6968 7.798596 AATTCTCATGGATATCACACAAGAC 57.201 36.000 4.83 0.00 0.00 3.01
6406 6969 9.498176 CATAATTCTCATGGATATCACACAAGA 57.502 33.333 4.83 4.66 0.00 3.02
6442 7007 7.471721 GCACTTGAGCACACAATATTTATGTA 58.528 34.615 2.50 0.00 0.00 2.29
6445 7010 5.353956 TCGCACTTGAGCACACAATATTTAT 59.646 36.000 0.00 0.00 0.00 1.40
6463 7028 1.001378 GTTTGCCTTTGACATCGCACT 60.001 47.619 0.00 0.00 0.00 4.40
6469 7034 6.373774 TGAAAATTGTTGTTTGCCTTTGACAT 59.626 30.769 0.00 0.00 0.00 3.06
6498 7063 3.064271 AGCTGAAACGTTTCTTTTACGCA 59.936 39.130 33.94 16.21 42.49 5.24
6500 7065 4.828704 TGAGCTGAAACGTTTCTTTTACG 58.171 39.130 33.94 18.98 44.20 3.18
6502 7067 6.612247 TCATGAGCTGAAACGTTTCTTTTA 57.388 33.333 33.94 20.09 38.02 1.52
6503 7068 5.499139 TCATGAGCTGAAACGTTTCTTTT 57.501 34.783 33.94 21.80 38.02 2.27
6507 7072 4.732285 TCTTCATGAGCTGAAACGTTTC 57.268 40.909 29.72 29.72 43.20 2.78
6511 7076 4.472691 TGTTTCTTCATGAGCTGAAACG 57.527 40.909 26.82 0.00 46.35 3.60
6512 7077 7.223387 ACAATTTGTTTCTTCATGAGCTGAAAC 59.777 33.333 26.46 26.46 43.20 2.78
6576 7168 4.347360 AGGTGTAACTGGTTGGTCTTAC 57.653 45.455 0.00 0.00 36.74 2.34
6598 7190 7.387119 TGAGACGACTAGCTATTCTTTTGTA 57.613 36.000 9.19 0.00 0.00 2.41
6601 7193 5.344884 GCTGAGACGACTAGCTATTCTTTT 58.655 41.667 9.19 0.00 34.70 2.27
6612 7204 0.741326 GCTGATGGCTGAGACGACTA 59.259 55.000 0.00 0.00 38.06 2.59
6649 7241 5.419542 CAACAAGATCTCGAAGGGATTACA 58.580 41.667 0.00 0.00 0.00 2.41
6657 7249 2.668457 CGGTTCCAACAAGATCTCGAAG 59.332 50.000 0.00 0.00 0.00 3.79
6668 7260 2.235402 GTTAGAGGATCCGGTTCCAACA 59.765 50.000 29.14 13.16 38.32 3.33
6673 7265 4.098960 TGTGTATGTTAGAGGATCCGGTTC 59.901 45.833 5.98 1.67 33.66 3.62
6674 7266 4.028131 TGTGTATGTTAGAGGATCCGGTT 58.972 43.478 5.98 0.00 33.66 4.44
6675 7267 3.638860 TGTGTATGTTAGAGGATCCGGT 58.361 45.455 5.98 0.00 33.66 5.28
6676 7268 4.665833 TTGTGTATGTTAGAGGATCCGG 57.334 45.455 5.98 0.00 33.66 5.14
6677 7269 5.050490 CCTTTGTGTATGTTAGAGGATCCG 58.950 45.833 5.98 0.00 33.66 4.18
6678 7270 6.235231 TCCTTTGTGTATGTTAGAGGATCC 57.765 41.667 2.48 2.48 33.66 3.36
6679 7271 7.275920 ACATCCTTTGTGTATGTTAGAGGATC 58.724 38.462 0.00 0.00 39.77 3.36
6680 7272 7.200434 ACATCCTTTGTGTATGTTAGAGGAT 57.800 36.000 0.00 0.00 41.82 3.24
6681 7273 6.620877 ACATCCTTTGTGTATGTTAGAGGA 57.379 37.500 0.00 0.00 37.11 3.71
6686 7278 7.260387 TCCCTAACATCCTTTGTGTATGTTA 57.740 36.000 0.00 0.00 42.31 2.41
6687 7279 6.134535 TCCCTAACATCCTTTGTGTATGTT 57.865 37.500 0.00 0.00 44.01 2.71
6688 7280 5.772393 TCCCTAACATCCTTTGTGTATGT 57.228 39.130 0.00 0.00 38.99 2.29
6689 7281 5.066505 GCTTCCCTAACATCCTTTGTGTATG 59.933 44.000 0.00 0.00 38.99 2.39
6690 7282 5.044846 AGCTTCCCTAACATCCTTTGTGTAT 60.045 40.000 0.00 0.00 38.99 2.29
6691 7283 4.288626 AGCTTCCCTAACATCCTTTGTGTA 59.711 41.667 0.00 0.00 38.99 2.90
6692 7284 3.074538 AGCTTCCCTAACATCCTTTGTGT 59.925 43.478 0.00 0.00 38.99 3.72
6693 7285 3.690460 AGCTTCCCTAACATCCTTTGTG 58.310 45.455 0.00 0.00 38.99 3.33
6694 7286 4.288626 TGTAGCTTCCCTAACATCCTTTGT 59.711 41.667 0.00 0.00 41.53 2.83
6695 7287 4.843728 TGTAGCTTCCCTAACATCCTTTG 58.156 43.478 0.00 0.00 0.00 2.77
6696 7288 5.717119 ATGTAGCTTCCCTAACATCCTTT 57.283 39.130 0.00 0.00 0.00 3.11
6697 7289 5.044846 ACAATGTAGCTTCCCTAACATCCTT 60.045 40.000 0.00 0.00 0.00 3.36
6698 7290 4.475016 ACAATGTAGCTTCCCTAACATCCT 59.525 41.667 0.00 0.00 0.00 3.24
6699 7291 4.781934 ACAATGTAGCTTCCCTAACATCC 58.218 43.478 0.00 0.00 0.00 3.51
6700 7292 4.816925 GGACAATGTAGCTTCCCTAACATC 59.183 45.833 0.00 0.00 0.00 3.06
6701 7293 4.475016 AGGACAATGTAGCTTCCCTAACAT 59.525 41.667 0.00 0.00 0.00 2.71
6702 7294 3.844211 AGGACAATGTAGCTTCCCTAACA 59.156 43.478 0.00 0.00 0.00 2.41
6703 7295 4.489306 AGGACAATGTAGCTTCCCTAAC 57.511 45.455 0.00 0.00 0.00 2.34
6704 7296 5.724854 AGTTAGGACAATGTAGCTTCCCTAA 59.275 40.000 0.00 5.28 33.78 2.69
6705 7297 5.278061 AGTTAGGACAATGTAGCTTCCCTA 58.722 41.667 0.00 0.00 0.00 3.53
6706 7298 4.104831 AGTTAGGACAATGTAGCTTCCCT 58.895 43.478 0.00 0.00 0.00 4.20
6707 7299 4.489306 AGTTAGGACAATGTAGCTTCCC 57.511 45.455 0.00 0.00 0.00 3.97
6708 7300 6.655425 AGAAAAGTTAGGACAATGTAGCTTCC 59.345 38.462 0.00 0.00 0.00 3.46
6709 7301 7.674471 AGAAAAGTTAGGACAATGTAGCTTC 57.326 36.000 0.00 0.00 0.00 3.86
6710 7302 8.465273 AAAGAAAAGTTAGGACAATGTAGCTT 57.535 30.769 0.00 0.00 0.00 3.74
6711 7303 8.352942 CAAAAGAAAAGTTAGGACAATGTAGCT 58.647 33.333 0.00 0.00 0.00 3.32
6712 7304 8.135529 ACAAAAGAAAAGTTAGGACAATGTAGC 58.864 33.333 0.00 0.00 0.00 3.58
6719 7311 9.191479 TGGATTAACAAAAGAAAAGTTAGGACA 57.809 29.630 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.