Multiple sequence alignment - TraesCS6A01G375400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G375400 chr6A 100.000 6504 0 0 1 6504 597795740 597789237 0.000000e+00 12011.0
1 TraesCS6A01G375400 chr6A 96.063 127 5 0 4320 4446 597791382 597791256 2.380000e-49 207.0
2 TraesCS6A01G375400 chr6A 96.063 127 5 0 4359 4485 597791421 597791295 2.380000e-49 207.0
3 TraesCS6A01G375400 chr6A 95.455 88 4 0 4320 4407 597791343 597791256 2.440000e-29 141.0
4 TraesCS6A01G375400 chr6A 95.455 88 4 0 4398 4485 597791421 597791334 2.440000e-29 141.0
5 TraesCS6A01G375400 chr6A 93.878 49 3 0 4320 4368 597791304 597791256 2.520000e-09 75.0
6 TraesCS6A01G375400 chr6A 93.878 49 3 0 4437 4485 597791421 597791373 2.520000e-09 75.0
7 TraesCS6A01G375400 chr6B 91.970 4209 219 61 100 4228 686370983 686366814 0.000000e+00 5790.0
8 TraesCS6A01G375400 chr6B 94.208 1502 41 16 4398 5870 686366752 686365268 0.000000e+00 2250.0
9 TraesCS6A01G375400 chr6B 95.556 540 24 0 5965 6504 686365122 686364583 0.000000e+00 865.0
10 TraesCS6A01G375400 chr6B 96.273 161 6 0 4246 4406 686366826 686366666 1.390000e-66 265.0
11 TraesCS6A01G375400 chr6B 81.707 246 34 7 382 623 89547063 89546825 1.850000e-45 195.0
12 TraesCS6A01G375400 chr6B 93.103 87 6 0 4359 4445 686366752 686366666 1.900000e-25 128.0
13 TraesCS6A01G375400 chr6D 90.851 4383 192 85 101 4400 451901207 451896951 0.000000e+00 5679.0
14 TraesCS6A01G375400 chr6D 93.492 2013 77 22 4526 6504 451896867 451894875 0.000000e+00 2942.0
15 TraesCS6A01G375400 chr6D 94.737 133 7 0 4398 4530 451897031 451896899 2.380000e-49 207.0
16 TraesCS6A01G375400 chrUn 100.000 390 0 0 2640 3029 479996814 479997203 0.000000e+00 721.0
17 TraesCS6A01G375400 chrUn 77.973 513 100 7 5991 6492 15346872 15346362 6.330000e-80 309.0
18 TraesCS6A01G375400 chrUn 77.885 520 100 9 5985 6492 272742788 272743304 6.330000e-80 309.0
19 TraesCS6A01G375400 chr7B 84.982 546 79 3 5960 6504 679361011 679360468 9.530000e-153 551.0
20 TraesCS6A01G375400 chr2A 82.819 518 88 1 5988 6504 723626656 723626139 4.590000e-126 462.0
21 TraesCS6A01G375400 chr2A 78.788 165 22 10 431 589 435375173 435375016 1.490000e-16 99.0
22 TraesCS6A01G375400 chr2B 81.071 523 84 12 5985 6499 713939016 713939531 2.820000e-108 403.0
23 TraesCS6A01G375400 chr2B 78.788 165 22 10 431 589 391904543 391904386 1.490000e-16 99.0
24 TraesCS6A01G375400 chr4B 79.406 505 69 17 339 833 160225206 160224727 2.260000e-84 324.0
25 TraesCS6A01G375400 chr4B 77.844 167 20 13 431 589 385040592 385040435 3.230000e-13 87.9
26 TraesCS6A01G375400 chr3B 82.243 214 25 9 382 589 703530289 703530083 8.670000e-39 172.0
27 TraesCS6A01G375400 chr1B 80.374 214 29 11 382 589 78173877 78173671 4.060000e-32 150.0
28 TraesCS6A01G375400 chr5B 79.054 148 20 9 437 580 651563366 651563226 2.500000e-14 91.6
29 TraesCS6A01G375400 chr5B 77.848 158 24 9 428 581 18373459 18373609 3.230000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G375400 chr6A 597789237 597795740 6503 True 12011.000000 12011 100.000000 1 6504 1 chr6A.!!$R1 6503
1 TraesCS6A01G375400 chr6B 686364583 686370983 6400 True 1859.600000 5790 94.222000 100 6504 5 chr6B.!!$R2 6404
2 TraesCS6A01G375400 chr6D 451894875 451901207 6332 True 2942.666667 5679 93.026667 101 6504 3 chr6D.!!$R1 6403
3 TraesCS6A01G375400 chrUn 15346362 15346872 510 True 309.000000 309 77.973000 5991 6492 1 chrUn.!!$R1 501
4 TraesCS6A01G375400 chrUn 272742788 272743304 516 False 309.000000 309 77.885000 5985 6492 1 chrUn.!!$F1 507
5 TraesCS6A01G375400 chr7B 679360468 679361011 543 True 551.000000 551 84.982000 5960 6504 1 chr7B.!!$R1 544
6 TraesCS6A01G375400 chr2A 723626139 723626656 517 True 462.000000 462 82.819000 5988 6504 1 chr2A.!!$R2 516
7 TraesCS6A01G375400 chr2B 713939016 713939531 515 False 403.000000 403 81.071000 5985 6499 1 chr2B.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.035036 ACGGACACGAGACAGAGAGA 59.965 55.000 0.00 0.00 44.60 3.10 F
159 160 0.105760 TGGCTGGTTCACCCATTGTT 60.106 50.000 0.00 0.00 44.15 2.83 F
828 881 0.108377 TTGCTTCTCGGCGATGCTAA 60.108 50.000 22.84 15.41 41.84 3.09 F
1228 1306 0.233848 GCACAAAAGCACAAGCATGC 59.766 50.000 10.51 10.51 46.50 4.06 F
1254 1332 0.717224 CATGCTGTTGCCAAATTCGC 59.283 50.000 0.00 0.00 38.71 4.70 F
1598 1686 1.330521 CGGCATGTGTACAAGGTATGC 59.669 52.381 19.33 19.33 42.43 3.14 F
2894 3005 2.046507 GAGGGAGTGTGCCTGCTG 60.047 66.667 0.00 0.00 38.79 4.41 F
3370 3483 0.603975 GGTCAGATCCTATTGGCGCC 60.604 60.000 22.73 22.73 0.00 6.53 F
4248 4369 0.035056 AGCAGTGGCACCCAATACTC 60.035 55.000 15.27 0.00 44.61 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 1306 0.889994 TGGCAACAGCATGCTTAAGG 59.110 50.000 19.98 9.56 46.17 2.69 R
1355 1435 1.005037 ATTGCTTGTGGCGTCGAGA 60.005 52.632 0.00 0.00 45.43 4.04 R
2171 2276 2.503765 ACGGTCATTGTCATATCCACCA 59.496 45.455 0.00 0.00 0.00 4.17 R
2534 2642 6.667414 AGGAGGATGTTTAACATAAATGGCAA 59.333 34.615 10.82 0.00 39.27 4.52 R
3113 3225 7.309133 CCATAACTTTGGTTTAGTCATGAGCAA 60.309 37.037 0.00 0.00 36.92 3.91 R
3370 3483 0.032540 GCACAGAAACCAAAGCCAGG 59.967 55.000 0.00 0.00 0.00 4.45 R
4229 4350 0.035056 GAGTATTGGGTGCCACTGCT 60.035 55.000 0.00 0.00 38.71 4.24 R
4417 4538 0.037303 ATGTTGAGGTGGCTGTGGAG 59.963 55.000 0.00 0.00 0.00 3.86 R
6134 6409 0.031111 TCTATGACCTGGACCTGGGG 60.031 60.000 20.61 9.35 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.321671 TGCCTGTCCCTTCTCTTTCG 59.678 55.000 0.00 0.00 0.00 3.46
20 21 1.021920 GCCTGTCCCTTCTCTTTCGC 61.022 60.000 0.00 0.00 0.00 4.70
21 22 0.321671 CCTGTCCCTTCTCTTTCGCA 59.678 55.000 0.00 0.00 0.00 5.10
22 23 1.674221 CCTGTCCCTTCTCTTTCGCAG 60.674 57.143 0.00 0.00 0.00 5.18
23 24 0.321671 TGTCCCTTCTCTTTCGCAGG 59.678 55.000 0.00 0.00 0.00 4.85
24 25 0.321996 GTCCCTTCTCTTTCGCAGGT 59.678 55.000 0.00 0.00 0.00 4.00
25 26 0.608640 TCCCTTCTCTTTCGCAGGTC 59.391 55.000 0.00 0.00 0.00 3.85
26 27 0.391793 CCCTTCTCTTTCGCAGGTCC 60.392 60.000 0.00 0.00 0.00 4.46
27 28 0.391793 CCTTCTCTTTCGCAGGTCCC 60.392 60.000 0.00 0.00 0.00 4.46
28 29 0.737715 CTTCTCTTTCGCAGGTCCCG 60.738 60.000 0.00 0.00 0.00 5.14
29 30 1.183030 TTCTCTTTCGCAGGTCCCGA 61.183 55.000 0.00 0.00 0.00 5.14
30 31 1.446272 CTCTTTCGCAGGTCCCGAC 60.446 63.158 0.00 0.00 34.01 4.79
31 32 1.878656 CTCTTTCGCAGGTCCCGACT 61.879 60.000 0.00 0.00 34.01 4.18
32 33 0.609957 TCTTTCGCAGGTCCCGACTA 60.610 55.000 0.00 0.00 34.01 2.59
33 34 0.458025 CTTTCGCAGGTCCCGACTAC 60.458 60.000 0.00 0.00 34.01 2.73
34 35 2.203972 TTTCGCAGGTCCCGACTACG 62.204 60.000 0.00 0.00 34.01 3.51
45 46 2.156542 CGACTACGGACACGAGACA 58.843 57.895 0.00 0.00 44.60 3.41
46 47 0.094901 CGACTACGGACACGAGACAG 59.905 60.000 0.00 0.00 44.60 3.51
47 48 1.436600 GACTACGGACACGAGACAGA 58.563 55.000 0.00 0.00 44.60 3.41
48 49 1.394227 GACTACGGACACGAGACAGAG 59.606 57.143 0.00 0.00 44.60 3.35
49 50 1.001746 ACTACGGACACGAGACAGAGA 59.998 52.381 0.00 0.00 44.60 3.10
50 51 1.661617 CTACGGACACGAGACAGAGAG 59.338 57.143 0.00 0.00 44.60 3.20
51 52 0.035036 ACGGACACGAGACAGAGAGA 59.965 55.000 0.00 0.00 44.60 3.10
52 53 1.157585 CGGACACGAGACAGAGAGAA 58.842 55.000 0.00 0.00 44.60 2.87
53 54 1.535896 CGGACACGAGACAGAGAGAAA 59.464 52.381 0.00 0.00 44.60 2.52
54 55 2.031069 CGGACACGAGACAGAGAGAAAA 60.031 50.000 0.00 0.00 44.60 2.29
55 56 3.550233 CGGACACGAGACAGAGAGAAAAA 60.550 47.826 0.00 0.00 44.60 1.94
56 57 4.561105 GGACACGAGACAGAGAGAAAAAT 58.439 43.478 0.00 0.00 0.00 1.82
57 58 4.387256 GGACACGAGACAGAGAGAAAAATG 59.613 45.833 0.00 0.00 0.00 2.32
58 59 3.743396 ACACGAGACAGAGAGAAAAATGC 59.257 43.478 0.00 0.00 0.00 3.56
59 60 3.993081 CACGAGACAGAGAGAAAAATGCT 59.007 43.478 0.00 0.00 0.00 3.79
60 61 5.164233 CACGAGACAGAGAGAAAAATGCTA 58.836 41.667 0.00 0.00 0.00 3.49
61 62 5.809562 CACGAGACAGAGAGAAAAATGCTAT 59.190 40.000 0.00 0.00 0.00 2.97
62 63 6.312426 CACGAGACAGAGAGAAAAATGCTATT 59.688 38.462 0.00 0.00 0.00 1.73
63 64 6.876257 ACGAGACAGAGAGAAAAATGCTATTT 59.124 34.615 0.00 0.00 0.00 1.40
64 65 7.064016 ACGAGACAGAGAGAAAAATGCTATTTC 59.936 37.037 0.00 2.49 37.11 2.17
65 66 7.277539 CGAGACAGAGAGAAAAATGCTATTTCT 59.722 37.037 10.39 10.39 46.81 2.52
66 67 8.266392 AGACAGAGAGAAAAATGCTATTTCTG 57.734 34.615 13.98 9.22 44.81 3.02
67 68 6.850555 ACAGAGAGAAAAATGCTATTTCTGC 58.149 36.000 13.98 8.01 44.81 4.26
68 69 5.964168 CAGAGAGAAAAATGCTATTTCTGCG 59.036 40.000 13.98 0.00 44.81 5.18
69 70 5.065731 AGAGAGAAAAATGCTATTTCTGCGG 59.934 40.000 13.98 0.00 44.81 5.69
70 71 4.943705 AGAGAAAAATGCTATTTCTGCGGA 59.056 37.500 13.98 0.00 44.81 5.54
71 72 4.986622 AGAAAAATGCTATTTCTGCGGAC 58.013 39.130 0.00 0.00 43.56 4.79
72 73 4.458989 AGAAAAATGCTATTTCTGCGGACA 59.541 37.500 0.00 0.00 43.56 4.02
73 74 3.764885 AAATGCTATTTCTGCGGACAC 57.235 42.857 0.00 0.00 0.00 3.67
74 75 1.668419 ATGCTATTTCTGCGGACACC 58.332 50.000 0.00 0.00 0.00 4.16
75 76 0.323302 TGCTATTTCTGCGGACACCA 59.677 50.000 0.00 0.00 0.00 4.17
76 77 1.009829 GCTATTTCTGCGGACACCAG 58.990 55.000 0.00 0.00 0.00 4.00
77 78 1.405526 GCTATTTCTGCGGACACCAGA 60.406 52.381 0.00 0.00 37.54 3.86
78 79 2.743183 GCTATTTCTGCGGACACCAGAT 60.743 50.000 0.00 0.00 38.95 2.90
79 80 2.496899 ATTTCTGCGGACACCAGATT 57.503 45.000 0.00 0.00 38.95 2.40
80 81 3.627395 ATTTCTGCGGACACCAGATTA 57.373 42.857 0.00 0.00 38.95 1.75
81 82 2.672961 TTCTGCGGACACCAGATTAG 57.327 50.000 0.00 0.00 38.95 1.73
82 83 1.847328 TCTGCGGACACCAGATTAGA 58.153 50.000 0.00 0.00 34.59 2.10
83 84 2.388735 TCTGCGGACACCAGATTAGAT 58.611 47.619 0.00 0.00 34.59 1.98
84 85 2.766263 TCTGCGGACACCAGATTAGATT 59.234 45.455 0.00 0.00 34.59 2.40
85 86 3.197766 TCTGCGGACACCAGATTAGATTT 59.802 43.478 0.00 0.00 34.59 2.17
86 87 3.941483 CTGCGGACACCAGATTAGATTTT 59.059 43.478 0.00 0.00 32.03 1.82
87 88 4.331968 TGCGGACACCAGATTAGATTTTT 58.668 39.130 0.00 0.00 0.00 1.94
157 158 1.880819 GCTGGCTGGTTCACCCATTG 61.881 60.000 0.00 0.00 44.15 2.82
159 160 0.105760 TGGCTGGTTCACCCATTGTT 60.106 50.000 0.00 0.00 44.15 2.83
160 161 1.047801 GGCTGGTTCACCCATTGTTT 58.952 50.000 0.00 0.00 44.15 2.83
161 162 1.270252 GGCTGGTTCACCCATTGTTTG 60.270 52.381 0.00 0.00 44.15 2.93
163 164 2.102252 GCTGGTTCACCCATTGTTTGAA 59.898 45.455 0.00 0.00 44.15 2.69
164 165 3.716601 CTGGTTCACCCATTGTTTGAAC 58.283 45.455 14.77 14.77 44.15 3.18
165 166 3.370104 TGGTTCACCCATTGTTTGAACT 58.630 40.909 19.28 0.00 45.59 3.01
166 167 4.537751 TGGTTCACCCATTGTTTGAACTA 58.462 39.130 19.28 14.29 45.59 2.24
167 168 4.956700 TGGTTCACCCATTGTTTGAACTAA 59.043 37.500 19.28 10.75 45.59 2.24
168 169 5.422331 TGGTTCACCCATTGTTTGAACTAAA 59.578 36.000 19.28 9.13 45.59 1.85
169 170 5.751509 GGTTCACCCATTGTTTGAACTAAAC 59.248 40.000 19.28 0.00 45.59 2.01
170 171 5.523438 TCACCCATTGTTTGAACTAAACC 57.477 39.130 0.00 0.00 46.44 3.27
171 172 4.342665 TCACCCATTGTTTGAACTAAACCC 59.657 41.667 0.00 0.00 46.44 4.11
172 173 4.100189 CACCCATTGTTTGAACTAAACCCA 59.900 41.667 0.00 0.00 46.44 4.51
176 177 6.599638 CCCATTGTTTGAACTAAACCCAAAAA 59.400 34.615 0.00 0.00 46.44 1.94
257 279 6.301169 AGAAACGAGATTATTGTTCTCCCT 57.699 37.500 0.00 0.00 37.00 4.20
258 280 6.342111 AGAAACGAGATTATTGTTCTCCCTC 58.658 40.000 0.00 0.00 37.00 4.30
260 282 3.388350 ACGAGATTATTGTTCTCCCTCCC 59.612 47.826 0.00 0.00 37.00 4.30
262 284 3.977326 GAGATTATTGTTCTCCCTCCCCT 59.023 47.826 0.00 0.00 34.75 4.79
290 314 3.603671 CGCCTACCCTCCGTAGCC 61.604 72.222 0.00 0.00 42.85 3.93
323 347 0.391395 TCAGGGAGACGAGACGAGAC 60.391 60.000 0.00 0.00 0.00 3.36
324 348 1.448189 AGGGAGACGAGACGAGACG 60.448 63.158 0.00 0.00 0.00 4.18
325 349 1.447489 GGGAGACGAGACGAGACGA 60.447 63.158 0.00 0.00 0.00 4.20
326 350 1.422950 GGGAGACGAGACGAGACGAG 61.423 65.000 0.00 0.00 0.00 4.18
327 351 0.458197 GGAGACGAGACGAGACGAGA 60.458 60.000 0.00 0.00 0.00 4.04
510 543 2.663196 CTCACCCAGGTTCGTCCC 59.337 66.667 0.00 0.00 36.75 4.46
530 563 3.138798 GCACGTCCCGAGCTCCTA 61.139 66.667 8.47 0.00 40.03 2.94
531 564 2.491022 GCACGTCCCGAGCTCCTAT 61.491 63.158 8.47 0.00 40.03 2.57
532 565 1.655329 CACGTCCCGAGCTCCTATC 59.345 63.158 8.47 0.00 0.00 2.08
536 569 1.899054 TCCCGAGCTCCTATCGCTG 60.899 63.158 8.47 0.00 37.96 5.18
537 570 2.049618 CCGAGCTCCTATCGCTGC 60.050 66.667 8.47 0.00 37.96 5.25
538 571 2.560119 CCGAGCTCCTATCGCTGCT 61.560 63.158 8.47 0.00 37.96 4.24
539 572 1.371512 CGAGCTCCTATCGCTGCTG 60.372 63.158 8.47 0.00 37.96 4.41
540 573 1.664333 GAGCTCCTATCGCTGCTGC 60.664 63.158 0.87 5.34 37.96 5.25
541 574 2.086251 GAGCTCCTATCGCTGCTGCT 62.086 60.000 14.03 0.00 37.96 4.24
542 575 1.955157 GCTCCTATCGCTGCTGCTG 60.955 63.158 14.03 0.77 36.97 4.41
543 576 1.955157 CTCCTATCGCTGCTGCTGC 60.955 63.158 19.94 19.94 36.97 5.25
544 577 2.108566 CCTATCGCTGCTGCTGCT 59.891 61.111 25.43 12.98 40.48 4.24
545 578 2.245346 CCTATCGCTGCTGCTGCTG 61.245 63.158 25.43 16.73 40.48 4.41
609 652 0.764752 GGGGAATGACCGGATCTCCT 60.765 60.000 9.46 0.00 40.11 3.69
610 653 0.394565 GGGAATGACCGGATCTCCTG 59.605 60.000 9.46 0.00 40.11 3.86
727 772 2.107141 CGGATCTCCTGCCCGTTC 59.893 66.667 0.00 0.00 38.55 3.95
735 780 2.281761 CTGCCCGTTCCTGCTGTT 60.282 61.111 0.00 0.00 0.00 3.16
738 783 2.429930 CCCGTTCCTGCTGTTGGA 59.570 61.111 0.00 0.00 0.00 3.53
767 813 0.179189 GCTTTTCGTGCCGGATTCTG 60.179 55.000 5.05 0.00 0.00 3.02
771 817 1.609635 TTCGTGCCGGATTCTGCCTA 61.610 55.000 5.05 0.00 0.00 3.93
782 835 2.185004 TTCTGCCTACTCTGTTTGGC 57.815 50.000 0.00 0.00 45.10 4.52
796 849 3.482436 TGTTTGGCTGTTAGGATCGTTT 58.518 40.909 0.00 0.00 0.00 3.60
798 851 2.851263 TGGCTGTTAGGATCGTTTGT 57.149 45.000 0.00 0.00 0.00 2.83
800 853 3.071479 TGGCTGTTAGGATCGTTTGTTC 58.929 45.455 0.00 0.00 0.00 3.18
816 869 4.989279 TTGTTCTTTTGAGCTTGCTTCT 57.011 36.364 0.00 0.00 0.00 2.85
828 881 0.108377 TTGCTTCTCGGCGATGCTAA 60.108 50.000 22.84 15.41 41.84 3.09
846 916 3.679083 GCTAAGCCTGTACAATCGGAGTT 60.679 47.826 3.88 0.00 0.00 3.01
925 1000 1.354168 TACCGAGGAGGAGGAGGAGG 61.354 65.000 0.00 0.00 45.00 4.30
937 1012 1.152546 GAGGAGGAGGAGGAGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
953 1028 4.814041 GCAGGAGGAGGGGAGGCT 62.814 72.222 0.00 0.00 0.00 4.58
957 1032 2.039624 GAGGAGGGGAGGCTGACA 59.960 66.667 0.00 0.00 0.00 3.58
1072 1149 2.606725 CCATCTGTCTGTTCATTCGAGC 59.393 50.000 0.00 0.00 0.00 5.03
1193 1271 2.169561 GGAACAGAAGGTGAGGAGATCC 59.830 54.545 0.00 0.00 0.00 3.36
1215 1293 0.968405 GGCCCTCTTTCATGCACAAA 59.032 50.000 0.00 0.00 0.00 2.83
1228 1306 0.233848 GCACAAAAGCACAAGCATGC 59.766 50.000 10.51 10.51 46.50 4.06
1254 1332 0.717224 CATGCTGTTGCCAAATTCGC 59.283 50.000 0.00 0.00 38.71 4.70
1286 1364 3.310774 CACTGCATACATCCAGTTGCTAC 59.689 47.826 0.00 0.00 40.12 3.58
1340 1420 2.172851 TAATCCGTTCCACGCAAACT 57.827 45.000 0.00 0.00 40.91 2.66
1355 1435 3.003689 CGCAAACTGACCTGAAACAGATT 59.996 43.478 0.00 0.00 37.54 2.40
1358 1438 5.561725 GCAAACTGACCTGAAACAGATTCTC 60.562 44.000 0.00 0.00 38.92 2.87
1361 1441 3.914312 TGACCTGAAACAGATTCTCGAC 58.086 45.455 0.00 0.00 38.92 4.20
1449 1537 4.571372 AACTAGTACGCCTTCTGCTATC 57.429 45.455 0.00 0.00 38.05 2.08
1487 1575 1.667722 CAGGGCCCTGTTTTCTTGC 59.332 57.895 39.52 0.77 39.10 4.01
1559 1647 1.374758 CGTGTGGAAGAGGGTCAGC 60.375 63.158 0.00 0.00 0.00 4.26
1598 1686 1.330521 CGGCATGTGTACAAGGTATGC 59.669 52.381 19.33 19.33 42.43 3.14
1605 1693 5.483685 TGTGTACAAGGTATGCTCTTCTT 57.516 39.130 0.00 0.00 0.00 2.52
1656 1747 4.759693 TCTTGATAATGCGTTGGACAGTTT 59.240 37.500 0.08 0.00 0.00 2.66
1670 1761 4.696877 TGGACAGTTTAATCTGATGCTGTG 59.303 41.667 18.30 4.72 37.32 3.66
1681 1772 3.633525 TCTGATGCTGTGTTTTGCTCTTT 59.366 39.130 0.00 0.00 0.00 2.52
1829 1933 4.063689 CCACACAGGCATCTCATCTTATC 58.936 47.826 0.00 0.00 0.00 1.75
1859 1964 7.049754 TCATCATACTTGCTTGATGCTCTAAA 58.950 34.615 7.80 0.00 45.67 1.85
1891 1996 2.295885 GAATTGCAGGCACTAGCTGAT 58.704 47.619 0.00 0.00 41.70 2.90
2037 2142 2.104111 CCAGGGACAAGTGAGTGTAACA 59.896 50.000 0.00 0.00 41.43 2.41
2074 2179 4.553547 GCTTCAAATATCTGATCGGCACAC 60.554 45.833 0.00 0.00 0.00 3.82
2116 2221 5.362556 TCTTGTGCTGATTAGTTTTCTGC 57.637 39.130 0.00 0.00 38.22 4.26
2171 2276 4.217112 GGACCACACAGGAGTCCT 57.783 61.111 5.62 5.62 45.49 3.85
2892 3003 2.490270 AATGGAGGGAGTGTGCCTGC 62.490 60.000 0.00 0.00 46.23 4.85
2893 3004 3.325753 GGAGGGAGTGTGCCTGCT 61.326 66.667 0.00 0.00 42.85 4.24
2894 3005 2.046507 GAGGGAGTGTGCCTGCTG 60.047 66.667 0.00 0.00 38.79 4.41
3036 3147 4.189580 ACAACCACCTGCGCCTGT 62.190 61.111 4.18 0.00 0.00 4.00
3113 3225 8.451908 AGTTTGTACTCTTTTAGCAGTCAATT 57.548 30.769 0.00 0.00 0.00 2.32
3152 3264 7.906327 ACCAAAGTTATGGAAAATAGCAATGT 58.094 30.769 10.03 0.00 43.54 2.71
3241 3354 6.813152 ACTGGCATGTTGCTGTTATAAATTTC 59.187 34.615 0.00 0.00 44.28 2.17
3367 3480 2.952310 GTTTGGGTCAGATCCTATTGGC 59.048 50.000 0.07 0.00 0.00 4.52
3370 3483 0.603975 GGTCAGATCCTATTGGCGCC 60.604 60.000 22.73 22.73 0.00 6.53
3477 3590 0.680921 GGCATGCCACCTGCTTCTAA 60.681 55.000 32.08 0.00 42.00 2.10
3534 3655 3.383761 GCCATTTGCATAAATTAGCGCT 58.616 40.909 17.26 17.26 40.77 5.92
3549 3670 1.002888 AGCGCTGATGATAATGGGGAG 59.997 52.381 10.39 0.00 0.00 4.30
3563 3684 9.793259 TGATAATGGGGAGAAGATACAATTTAC 57.207 33.333 0.00 0.00 0.00 2.01
3573 3694 4.189231 AGATACAATTTACACCGGACTGC 58.811 43.478 9.46 0.00 0.00 4.40
3662 3783 4.682787 TGACATACTGGATAAGTTGAGCG 58.317 43.478 0.00 0.00 40.56 5.03
3748 3869 5.124936 GGAGTAATGTTGGCTAAATTTCGGT 59.875 40.000 0.00 0.00 0.00 4.69
3822 3943 7.220108 GGAATGACTGTTGTGTTCTGTTTTAAC 59.780 37.037 0.00 0.00 0.00 2.01
3831 3952 7.106439 TGTGTTCTGTTTTAACATGGTCATT 57.894 32.000 0.00 0.00 38.95 2.57
3850 3971 1.939974 TATAGCCAACGCAAGCAGAG 58.060 50.000 0.00 0.00 45.62 3.35
3858 3979 1.023513 ACGCAAGCAGAGATTCAGCC 61.024 55.000 0.00 0.00 45.62 4.85
4045 4166 1.065199 CCAGCCTGCTTCATCCACTAA 60.065 52.381 0.00 0.00 0.00 2.24
4072 4193 2.579207 TTTGAAGATACTCTCGGCGG 57.421 50.000 7.21 0.00 0.00 6.13
4103 4224 1.380785 ATCCAATGCTGCACCTGGG 60.381 57.895 24.63 15.47 0.00 4.45
4222 4343 3.683822 GCATCTCAGCCTATTACTCATGC 59.316 47.826 0.00 0.00 0.00 4.06
4223 4344 4.563168 GCATCTCAGCCTATTACTCATGCT 60.563 45.833 0.00 0.00 32.99 3.79
4224 4345 4.862902 TCTCAGCCTATTACTCATGCTC 57.137 45.455 0.00 0.00 0.00 4.26
4225 4346 3.576118 TCTCAGCCTATTACTCATGCTCC 59.424 47.826 0.00 0.00 0.00 4.70
4226 4347 3.577848 CTCAGCCTATTACTCATGCTCCT 59.422 47.826 0.00 0.00 0.00 3.69
4227 4348 3.576118 TCAGCCTATTACTCATGCTCCTC 59.424 47.826 0.00 0.00 0.00 3.71
4228 4349 3.323115 CAGCCTATTACTCATGCTCCTCA 59.677 47.826 0.00 0.00 0.00 3.86
4229 4350 3.969976 AGCCTATTACTCATGCTCCTCAA 59.030 43.478 0.00 0.00 0.00 3.02
4230 4351 4.040217 AGCCTATTACTCATGCTCCTCAAG 59.960 45.833 0.00 0.00 0.00 3.02
4239 4360 3.978272 CTCCTCAAGCAGTGGCAC 58.022 61.111 10.29 10.29 44.61 5.01
4240 4361 1.673665 CTCCTCAAGCAGTGGCACC 60.674 63.158 15.27 0.00 44.61 5.01
4241 4362 2.674380 CCTCAAGCAGTGGCACCC 60.674 66.667 15.27 5.86 44.61 4.61
4242 4363 2.113774 CTCAAGCAGTGGCACCCA 59.886 61.111 15.27 0.00 44.61 4.51
4243 4364 1.529010 CTCAAGCAGTGGCACCCAA 60.529 57.895 15.27 0.00 44.61 4.12
4244 4365 0.896940 CTCAAGCAGTGGCACCCAAT 60.897 55.000 15.27 0.00 44.61 3.16
4245 4366 0.403655 TCAAGCAGTGGCACCCAATA 59.596 50.000 15.27 0.00 44.61 1.90
4246 4367 0.527565 CAAGCAGTGGCACCCAATAC 59.472 55.000 15.27 0.00 44.61 1.89
4247 4368 0.405585 AAGCAGTGGCACCCAATACT 59.594 50.000 15.27 0.00 44.61 2.12
4248 4369 0.035056 AGCAGTGGCACCCAATACTC 60.035 55.000 15.27 0.00 44.61 2.59
4249 4370 0.322456 GCAGTGGCACCCAATACTCA 60.322 55.000 15.27 0.00 40.72 3.41
4250 4371 1.683011 GCAGTGGCACCCAATACTCAT 60.683 52.381 15.27 0.00 40.72 2.90
4251 4372 2.019249 CAGTGGCACCCAATACTCATG 58.981 52.381 15.27 0.00 34.18 3.07
4375 4496 1.286501 CATGCTGCACCATCATTTGC 58.713 50.000 3.57 0.00 39.33 3.68
4376 4497 1.134818 CATGCTGCACCATCATTTGCT 60.135 47.619 3.57 0.00 39.62 3.91
4377 4498 0.528924 TGCTGCACCATCATTTGCTC 59.471 50.000 0.00 0.00 39.62 4.26
4378 4499 0.179119 GCTGCACCATCATTTGCTCC 60.179 55.000 0.00 0.00 39.62 4.70
4379 4500 1.471119 CTGCACCATCATTTGCTCCT 58.529 50.000 0.00 0.00 39.62 3.69
4380 4501 2.646930 CTGCACCATCATTTGCTCCTA 58.353 47.619 0.00 0.00 39.62 2.94
4381 4502 2.357009 CTGCACCATCATTTGCTCCTAC 59.643 50.000 0.00 0.00 39.62 3.18
4382 4503 2.290832 TGCACCATCATTTGCTCCTACA 60.291 45.455 0.00 0.00 39.62 2.74
4383 4504 2.098117 GCACCATCATTTGCTCCTACAC 59.902 50.000 0.00 0.00 35.74 2.90
4384 4505 3.346315 CACCATCATTTGCTCCTACACA 58.654 45.455 0.00 0.00 0.00 3.72
4385 4506 3.376234 CACCATCATTTGCTCCTACACAG 59.624 47.826 0.00 0.00 0.00 3.66
4386 4507 2.357009 CCATCATTTGCTCCTACACAGC 59.643 50.000 0.00 0.00 37.40 4.40
4387 4508 2.113860 TCATTTGCTCCTACACAGCC 57.886 50.000 0.00 0.00 35.89 4.85
4388 4509 1.350684 TCATTTGCTCCTACACAGCCA 59.649 47.619 0.00 0.00 35.89 4.75
4389 4510 1.470098 CATTTGCTCCTACACAGCCAC 59.530 52.381 0.00 0.00 35.89 5.01
4390 4511 0.250727 TTTGCTCCTACACAGCCACC 60.251 55.000 0.00 0.00 35.89 4.61
4391 4512 1.127567 TTGCTCCTACACAGCCACCT 61.128 55.000 0.00 0.00 35.89 4.00
4392 4513 1.219393 GCTCCTACACAGCCACCTC 59.781 63.158 0.00 0.00 0.00 3.85
4393 4514 1.544825 GCTCCTACACAGCCACCTCA 61.545 60.000 0.00 0.00 0.00 3.86
4394 4515 0.976641 CTCCTACACAGCCACCTCAA 59.023 55.000 0.00 0.00 0.00 3.02
4395 4516 0.685097 TCCTACACAGCCACCTCAAC 59.315 55.000 0.00 0.00 0.00 3.18
4396 4517 0.396435 CCTACACAGCCACCTCAACA 59.604 55.000 0.00 0.00 0.00 3.33
4397 4518 1.003580 CCTACACAGCCACCTCAACAT 59.996 52.381 0.00 0.00 0.00 2.71
4398 4519 2.079158 CTACACAGCCACCTCAACATG 58.921 52.381 0.00 0.00 0.00 3.21
4399 4520 1.174712 ACACAGCCACCTCAACATGC 61.175 55.000 0.00 0.00 0.00 4.06
4400 4521 0.892358 CACAGCCACCTCAACATGCT 60.892 55.000 0.00 0.00 0.00 3.79
4401 4522 1.880894 CAGCCACCTCAACATGCTG 59.119 57.895 0.00 0.00 42.85 4.41
4402 4523 1.975407 AGCCACCTCAACATGCTGC 60.975 57.895 0.00 0.00 0.00 5.25
4403 4524 2.270257 GCCACCTCAACATGCTGCA 61.270 57.895 4.13 4.13 0.00 4.41
4404 4525 1.582968 CCACCTCAACATGCTGCAC 59.417 57.895 3.57 0.00 0.00 4.57
4405 4526 1.582968 CACCTCAACATGCTGCACC 59.417 57.895 3.57 0.00 0.00 5.01
4406 4527 1.151221 ACCTCAACATGCTGCACCA 59.849 52.632 3.57 0.00 0.00 4.17
4407 4528 0.251474 ACCTCAACATGCTGCACCAT 60.251 50.000 3.57 0.00 0.00 3.55
4408 4529 0.454600 CCTCAACATGCTGCACCATC 59.545 55.000 3.57 0.00 0.00 3.51
4409 4530 1.170442 CTCAACATGCTGCACCATCA 58.830 50.000 3.57 0.00 0.00 3.07
4410 4531 1.749063 CTCAACATGCTGCACCATCAT 59.251 47.619 3.57 0.00 0.00 2.45
4411 4532 2.165641 CTCAACATGCTGCACCATCATT 59.834 45.455 3.57 0.00 0.00 2.57
4412 4533 2.563620 TCAACATGCTGCACCATCATTT 59.436 40.909 3.57 0.00 0.00 2.32
4413 4534 2.665649 ACATGCTGCACCATCATTTG 57.334 45.000 3.57 0.00 0.00 2.32
4414 4535 1.286501 CATGCTGCACCATCATTTGC 58.713 50.000 3.57 0.00 39.33 3.68
4415 4536 1.134818 CATGCTGCACCATCATTTGCT 60.135 47.619 3.57 0.00 39.62 3.91
4416 4537 0.528924 TGCTGCACCATCATTTGCTC 59.471 50.000 0.00 0.00 39.62 4.26
4417 4538 0.179119 GCTGCACCATCATTTGCTCC 60.179 55.000 0.00 0.00 39.62 4.70
4418 4539 1.471119 CTGCACCATCATTTGCTCCT 58.529 50.000 0.00 0.00 39.62 3.69
4419 4540 1.404391 CTGCACCATCATTTGCTCCTC 59.596 52.381 0.00 0.00 39.62 3.71
4420 4541 0.743097 GCACCATCATTTGCTCCTCC 59.257 55.000 0.00 0.00 35.74 4.30
4421 4542 1.956636 GCACCATCATTTGCTCCTCCA 60.957 52.381 0.00 0.00 35.74 3.86
4422 4543 1.747355 CACCATCATTTGCTCCTCCAC 59.253 52.381 0.00 0.00 0.00 4.02
4423 4544 1.355381 ACCATCATTTGCTCCTCCACA 59.645 47.619 0.00 0.00 0.00 4.17
4424 4545 2.022195 CCATCATTTGCTCCTCCACAG 58.978 52.381 0.00 0.00 0.00 3.66
4425 4546 1.404391 CATCATTTGCTCCTCCACAGC 59.596 52.381 0.00 0.00 37.40 4.40
4426 4547 0.322816 TCATTTGCTCCTCCACAGCC 60.323 55.000 0.00 0.00 35.89 4.85
4427 4548 0.609957 CATTTGCTCCTCCACAGCCA 60.610 55.000 0.00 0.00 35.89 4.75
4428 4549 0.610232 ATTTGCTCCTCCACAGCCAC 60.610 55.000 0.00 0.00 35.89 5.01
4429 4550 2.697147 TTTGCTCCTCCACAGCCACC 62.697 60.000 0.00 0.00 35.89 4.61
4430 4551 3.325753 GCTCCTCCACAGCCACCT 61.326 66.667 0.00 0.00 0.00 4.00
4431 4552 2.985456 CTCCTCCACAGCCACCTC 59.015 66.667 0.00 0.00 0.00 3.85
4432 4553 1.915266 CTCCTCCACAGCCACCTCA 60.915 63.158 0.00 0.00 0.00 3.86
4433 4554 1.461268 TCCTCCACAGCCACCTCAA 60.461 57.895 0.00 0.00 0.00 3.02
4434 4555 1.302832 CCTCCACAGCCACCTCAAC 60.303 63.158 0.00 0.00 0.00 3.18
4435 4556 1.451504 CTCCACAGCCACCTCAACA 59.548 57.895 0.00 0.00 0.00 3.33
4436 4557 0.037303 CTCCACAGCCACCTCAACAT 59.963 55.000 0.00 0.00 0.00 2.71
4437 4558 0.250858 TCCACAGCCACCTCAACATG 60.251 55.000 0.00 0.00 0.00 3.21
4438 4559 1.582968 CACAGCCACCTCAACATGC 59.417 57.895 0.00 0.00 0.00 4.06
4439 4560 0.892358 CACAGCCACCTCAACATGCT 60.892 55.000 0.00 0.00 0.00 3.79
4440 4561 1.880894 CAGCCACCTCAACATGCTG 59.119 57.895 0.00 0.00 42.85 4.41
4441 4562 1.975407 AGCCACCTCAACATGCTGC 60.975 57.895 0.00 0.00 0.00 5.25
4442 4563 2.270257 GCCACCTCAACATGCTGCA 61.270 57.895 4.13 4.13 0.00 4.41
4443 4564 1.582968 CCACCTCAACATGCTGCAC 59.417 57.895 3.57 0.00 0.00 4.57
4444 4565 1.582968 CACCTCAACATGCTGCACC 59.417 57.895 3.57 0.00 0.00 5.01
4445 4566 1.151221 ACCTCAACATGCTGCACCA 59.849 52.632 3.57 0.00 0.00 4.17
4446 4567 0.251474 ACCTCAACATGCTGCACCAT 60.251 50.000 3.57 0.00 0.00 3.55
4447 4568 0.454600 CCTCAACATGCTGCACCATC 59.545 55.000 3.57 0.00 0.00 3.51
4448 4569 1.170442 CTCAACATGCTGCACCATCA 58.830 50.000 3.57 0.00 0.00 3.07
4449 4570 1.749063 CTCAACATGCTGCACCATCAT 59.251 47.619 3.57 0.00 0.00 2.45
4450 4571 2.165641 CTCAACATGCTGCACCATCATT 59.834 45.455 3.57 0.00 0.00 2.57
4451 4572 2.563620 TCAACATGCTGCACCATCATTT 59.436 40.909 3.57 0.00 0.00 2.32
4452 4573 2.665649 ACATGCTGCACCATCATTTG 57.334 45.000 3.57 0.00 0.00 2.32
4464 4585 1.404391 CATCATTTGCTCCTCCACAGC 59.596 52.381 0.00 0.00 37.40 4.40
4484 4605 0.607217 CACCTCAACATGCAGCTCCA 60.607 55.000 0.00 0.00 0.00 3.86
4577 4734 3.360867 TCCTCCACAGTCTTCTCATCTC 58.639 50.000 0.00 0.00 0.00 2.75
4589 4746 1.902508 TCTCATCTCCCACCTCAACAC 59.097 52.381 0.00 0.00 0.00 3.32
4593 4750 1.003355 CTCCCACCTCAACACGCAT 60.003 57.895 0.00 0.00 0.00 4.73
4649 4806 1.954733 GCACCACAGGCACCATCAATA 60.955 52.381 0.00 0.00 0.00 1.90
4873 5030 3.306472 TTCTGGTGGTAAGTGGCTTTT 57.694 42.857 0.00 0.00 0.00 2.27
4874 5031 2.582052 TCTGGTGGTAAGTGGCTTTTG 58.418 47.619 0.00 0.00 0.00 2.44
4915 5087 6.099341 GTCCTCATTCTGTTTTTGTGTGTTT 58.901 36.000 0.00 0.00 0.00 2.83
4960 5133 3.177997 ACAGCAAAAACCAATCCACAC 57.822 42.857 0.00 0.00 0.00 3.82
4981 5154 3.126831 CGCAGATATTGGAGTGGACTTC 58.873 50.000 0.00 0.00 0.00 3.01
5089 5262 2.044650 TCTGGCTCTGGCATTGGC 60.045 61.111 2.73 2.73 40.87 4.52
5212 5385 1.123246 GGCCAATGGGGATGGGAATG 61.123 60.000 0.00 0.00 40.01 2.67
5213 5386 1.123246 GCCAATGGGGATGGGAATGG 61.123 60.000 0.00 0.00 40.01 3.16
5214 5387 0.472352 CCAATGGGGATGGGAATGGG 60.472 60.000 0.00 0.00 40.01 4.00
5215 5388 0.562177 CAATGGGGATGGGAATGGGA 59.438 55.000 0.00 0.00 0.00 4.37
5216 5389 1.062275 CAATGGGGATGGGAATGGGAA 60.062 52.381 0.00 0.00 0.00 3.97
5217 5390 1.561237 ATGGGGATGGGAATGGGAAT 58.439 50.000 0.00 0.00 0.00 3.01
5476 5658 2.980233 GGTGCTGGATATGGCGGC 60.980 66.667 0.00 0.00 0.00 6.53
5865 6057 8.241367 GGATGTACTACCATTTTGTCGAATTTT 58.759 33.333 0.00 0.00 0.00 1.82
5870 6062 8.710835 ACTACCATTTTGTCGAATTTTTGTTT 57.289 26.923 0.00 0.00 0.00 2.83
5871 6063 9.157104 ACTACCATTTTGTCGAATTTTTGTTTT 57.843 25.926 0.00 0.00 0.00 2.43
5872 6064 9.980780 CTACCATTTTGTCGAATTTTTGTTTTT 57.019 25.926 0.00 0.00 0.00 1.94
5873 6065 8.666580 ACCATTTTGTCGAATTTTTGTTTTTG 57.333 26.923 0.00 0.00 0.00 2.44
5874 6066 8.293157 ACCATTTTGTCGAATTTTTGTTTTTGT 58.707 25.926 0.00 0.00 0.00 2.83
5875 6067 9.122613 CCATTTTGTCGAATTTTTGTTTTTGTT 57.877 25.926 0.00 0.00 0.00 2.83
5877 6069 7.978798 TTTGTCGAATTTTTGTTTTTGTTCG 57.021 28.000 0.00 0.00 39.60 3.95
5878 6070 5.542813 TGTCGAATTTTTGTTTTTGTTCGC 58.457 33.333 0.00 0.00 38.53 4.70
5879 6071 4.653971 GTCGAATTTTTGTTTTTGTTCGCG 59.346 37.500 0.00 0.00 38.53 5.87
5880 6072 3.409651 CGAATTTTTGTTTTTGTTCGCGC 59.590 39.130 0.00 0.00 33.25 6.86
5881 6073 2.789569 TTTTTGTTTTTGTTCGCGCC 57.210 40.000 0.00 0.00 0.00 6.53
5886 6078 1.590238 TGTTTTTGTTCGCGCCATTTG 59.410 42.857 0.00 0.00 0.00 2.32
5887 6079 1.855360 GTTTTTGTTCGCGCCATTTGA 59.145 42.857 0.00 0.00 0.00 2.69
5888 6080 1.764851 TTTTGTTCGCGCCATTTGAG 58.235 45.000 0.00 0.00 0.00 3.02
5889 6081 0.662970 TTTGTTCGCGCCATTTGAGC 60.663 50.000 0.00 0.00 0.00 4.26
5890 6082 1.790090 TTGTTCGCGCCATTTGAGCA 61.790 50.000 0.00 0.00 0.00 4.26
5894 6086 1.153978 CGCGCCATTTGAGCAACAT 60.154 52.632 0.00 0.00 0.00 2.71
5895 6087 0.733566 CGCGCCATTTGAGCAACATT 60.734 50.000 0.00 0.00 0.00 2.71
5944 6180 6.959361 TGATCAAACAAGACTAGAAACTTGC 58.041 36.000 19.96 9.81 44.75 4.01
5946 6182 4.272504 TCAAACAAGACTAGAAACTTGCGG 59.727 41.667 19.96 13.53 44.75 5.69
5949 6185 4.448210 ACAAGACTAGAAACTTGCGGAAA 58.552 39.130 19.96 0.00 44.75 3.13
5950 6186 4.511826 ACAAGACTAGAAACTTGCGGAAAG 59.488 41.667 19.96 0.00 44.75 2.62
5952 6188 4.957296 AGACTAGAAACTTGCGGAAAGAA 58.043 39.130 1.86 0.00 39.38 2.52
5953 6189 4.991687 AGACTAGAAACTTGCGGAAAGAAG 59.008 41.667 1.86 0.00 39.38 2.85
5955 6191 4.991687 ACTAGAAACTTGCGGAAAGAAGAG 59.008 41.667 1.86 0.00 39.38 2.85
5959 6195 1.141053 ACTTGCGGAAAGAAGAGTGGT 59.859 47.619 1.86 0.00 39.38 4.16
5961 6197 3.181458 ACTTGCGGAAAGAAGAGTGGTAA 60.181 43.478 1.86 0.00 39.38 2.85
5963 6199 3.811083 TGCGGAAAGAAGAGTGGTAAAA 58.189 40.909 0.00 0.00 0.00 1.52
6158 6433 0.179081 GGTCCAGGTCATAGAACGGC 60.179 60.000 0.00 0.00 0.00 5.68
6276 6551 0.108804 GGCGAAGTCGATGAAGGACA 60.109 55.000 4.59 0.00 43.02 4.02
6286 6561 4.338682 GTCGATGAAGGACATGTAGTAGGT 59.661 45.833 0.00 0.00 39.56 3.08
6356 6631 2.581354 GGCATGTCCACGAGCTCT 59.419 61.111 12.85 0.00 34.01 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321671 CGAAAGAGAAGGGACAGGCA 59.678 55.000 0.00 0.00 0.00 4.75
2 3 0.321671 TGCGAAAGAGAAGGGACAGG 59.678 55.000 0.00 0.00 0.00 4.00
3 4 1.674221 CCTGCGAAAGAGAAGGGACAG 60.674 57.143 0.00 0.00 0.00 3.51
5 6 0.321996 ACCTGCGAAAGAGAAGGGAC 59.678 55.000 0.00 0.00 33.54 4.46
6 7 0.608640 GACCTGCGAAAGAGAAGGGA 59.391 55.000 0.00 0.00 33.54 4.20
7 8 0.391793 GGACCTGCGAAAGAGAAGGG 60.392 60.000 0.00 0.00 33.54 3.95
8 9 0.391793 GGGACCTGCGAAAGAGAAGG 60.392 60.000 0.00 0.00 34.88 3.46
9 10 0.737715 CGGGACCTGCGAAAGAGAAG 60.738 60.000 0.00 0.00 0.00 2.85
10 11 1.183030 TCGGGACCTGCGAAAGAGAA 61.183 55.000 0.00 0.00 0.00 2.87
11 12 1.605451 TCGGGACCTGCGAAAGAGA 60.605 57.895 0.00 0.00 0.00 3.10
12 13 1.446272 GTCGGGACCTGCGAAAGAG 60.446 63.158 0.00 0.00 0.00 2.85
13 14 0.609957 TAGTCGGGACCTGCGAAAGA 60.610 55.000 0.00 0.00 0.00 2.52
14 15 0.458025 GTAGTCGGGACCTGCGAAAG 60.458 60.000 0.00 0.00 0.00 2.62
15 16 1.588082 GTAGTCGGGACCTGCGAAA 59.412 57.895 0.00 0.00 0.00 3.46
16 17 2.693762 CGTAGTCGGGACCTGCGAA 61.694 63.158 0.00 0.00 0.00 4.70
17 18 3.129502 CGTAGTCGGGACCTGCGA 61.130 66.667 0.00 0.00 0.00 5.10
27 28 0.094901 CTGTCTCGTGTCCGTAGTCG 59.905 60.000 0.00 0.00 35.01 4.18
28 29 1.394227 CTCTGTCTCGTGTCCGTAGTC 59.606 57.143 0.00 0.00 35.01 2.59
29 30 1.001746 TCTCTGTCTCGTGTCCGTAGT 59.998 52.381 0.00 0.00 35.01 2.73
30 31 1.661617 CTCTCTGTCTCGTGTCCGTAG 59.338 57.143 0.00 0.00 35.01 3.51
31 32 1.274447 TCTCTCTGTCTCGTGTCCGTA 59.726 52.381 0.00 0.00 35.01 4.02
32 33 0.035036 TCTCTCTGTCTCGTGTCCGT 59.965 55.000 0.00 0.00 35.01 4.69
33 34 1.157585 TTCTCTCTGTCTCGTGTCCG 58.842 55.000 0.00 0.00 0.00 4.79
34 35 3.644884 TTTTCTCTCTGTCTCGTGTCC 57.355 47.619 0.00 0.00 0.00 4.02
35 36 4.143221 GCATTTTTCTCTCTGTCTCGTGTC 60.143 45.833 0.00 0.00 0.00 3.67
36 37 3.743396 GCATTTTTCTCTCTGTCTCGTGT 59.257 43.478 0.00 0.00 0.00 4.49
37 38 3.993081 AGCATTTTTCTCTCTGTCTCGTG 59.007 43.478 0.00 0.00 0.00 4.35
38 39 4.264460 AGCATTTTTCTCTCTGTCTCGT 57.736 40.909 0.00 0.00 0.00 4.18
39 40 6.900568 AATAGCATTTTTCTCTCTGTCTCG 57.099 37.500 0.00 0.00 0.00 4.04
40 41 8.389603 CAGAAATAGCATTTTTCTCTCTGTCTC 58.610 37.037 5.80 0.00 40.53 3.36
41 42 7.148272 GCAGAAATAGCATTTTTCTCTCTGTCT 60.148 37.037 5.80 0.00 40.53 3.41
42 43 6.966066 GCAGAAATAGCATTTTTCTCTCTGTC 59.034 38.462 5.80 0.00 40.53 3.51
43 44 6.402983 CGCAGAAATAGCATTTTTCTCTCTGT 60.403 38.462 5.80 0.00 40.53 3.41
44 45 5.964168 CGCAGAAATAGCATTTTTCTCTCTG 59.036 40.000 5.80 0.00 40.53 3.35
45 46 5.065731 CCGCAGAAATAGCATTTTTCTCTCT 59.934 40.000 5.80 0.00 40.53 3.10
46 47 5.065218 TCCGCAGAAATAGCATTTTTCTCTC 59.935 40.000 5.80 2.19 40.53 3.20
47 48 4.943705 TCCGCAGAAATAGCATTTTTCTCT 59.056 37.500 5.80 0.00 40.53 3.10
48 49 5.030936 GTCCGCAGAAATAGCATTTTTCTC 58.969 41.667 5.80 2.52 40.53 2.87
49 50 4.458989 TGTCCGCAGAAATAGCATTTTTCT 59.541 37.500 3.53 3.53 42.63 2.52
50 51 4.558860 GTGTCCGCAGAAATAGCATTTTTC 59.441 41.667 0.00 0.00 34.08 2.29
51 52 4.485163 GTGTCCGCAGAAATAGCATTTTT 58.515 39.130 0.00 0.00 0.00 1.94
52 53 3.119495 GGTGTCCGCAGAAATAGCATTTT 60.119 43.478 0.00 0.00 0.00 1.82
53 54 2.423538 GGTGTCCGCAGAAATAGCATTT 59.576 45.455 0.00 0.00 0.00 2.32
54 55 2.017049 GGTGTCCGCAGAAATAGCATT 58.983 47.619 0.00 0.00 0.00 3.56
55 56 1.065491 TGGTGTCCGCAGAAATAGCAT 60.065 47.619 0.00 0.00 0.00 3.79
56 57 0.323302 TGGTGTCCGCAGAAATAGCA 59.677 50.000 0.00 0.00 0.00 3.49
57 58 1.009829 CTGGTGTCCGCAGAAATAGC 58.990 55.000 0.00 0.00 0.00 2.97
58 59 2.672961 TCTGGTGTCCGCAGAAATAG 57.327 50.000 0.00 0.00 0.00 1.73
59 60 3.627395 AATCTGGTGTCCGCAGAAATA 57.373 42.857 0.00 0.00 0.00 1.40
60 61 2.496899 AATCTGGTGTCCGCAGAAAT 57.503 45.000 0.00 0.00 0.00 2.17
61 62 2.565391 TCTAATCTGGTGTCCGCAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
62 63 2.176045 TCTAATCTGGTGTCCGCAGAA 58.824 47.619 0.00 0.00 0.00 3.02
63 64 1.847328 TCTAATCTGGTGTCCGCAGA 58.153 50.000 0.00 0.00 0.00 4.26
64 65 2.898729 ATCTAATCTGGTGTCCGCAG 57.101 50.000 0.00 0.00 0.00 5.18
65 66 3.627395 AAATCTAATCTGGTGTCCGCA 57.373 42.857 0.00 0.00 0.00 5.69
66 67 4.965119 AAAAATCTAATCTGGTGTCCGC 57.035 40.909 0.00 0.00 0.00 5.54
86 87 3.606153 GCGCGCTTCTCTTCTAACAAAAA 60.606 43.478 26.67 0.00 0.00 1.94
87 88 2.096417 GCGCGCTTCTCTTCTAACAAAA 60.096 45.455 26.67 0.00 0.00 2.44
88 89 1.459592 GCGCGCTTCTCTTCTAACAAA 59.540 47.619 26.67 0.00 0.00 2.83
89 90 1.068474 GCGCGCTTCTCTTCTAACAA 58.932 50.000 26.67 0.00 0.00 2.83
90 91 0.038618 TGCGCGCTTCTCTTCTAACA 60.039 50.000 33.29 3.26 0.00 2.41
91 92 1.068474 TTGCGCGCTTCTCTTCTAAC 58.932 50.000 33.29 0.00 0.00 2.34
92 93 1.068474 GTTGCGCGCTTCTCTTCTAA 58.932 50.000 33.29 11.89 0.00 2.10
93 94 0.243907 AGTTGCGCGCTTCTCTTCTA 59.756 50.000 33.29 5.03 0.00 2.10
94 95 1.005630 AGTTGCGCGCTTCTCTTCT 60.006 52.632 33.29 15.52 0.00 2.85
95 96 1.131420 CAGTTGCGCGCTTCTCTTC 59.869 57.895 33.29 13.58 0.00 2.87
96 97 0.671781 ATCAGTTGCGCGCTTCTCTT 60.672 50.000 33.29 15.22 0.00 2.85
97 98 1.079543 ATCAGTTGCGCGCTTCTCT 60.080 52.632 33.29 20.32 0.00 3.10
98 99 1.346538 GATCAGTTGCGCGCTTCTC 59.653 57.895 33.29 18.44 0.00 2.87
99 100 1.374631 TGATCAGTTGCGCGCTTCT 60.375 52.632 33.29 25.29 0.00 2.85
183 184 1.599542 GCTGGTGCTCGGCTAATTAAG 59.400 52.381 4.55 0.00 44.20 1.85
224 236 8.297426 ACAATAATCTCGTTTCTTTTCCTTTCC 58.703 33.333 0.00 0.00 0.00 3.13
290 314 2.031516 CCTGAGTTGTCGCTGGCTG 61.032 63.158 0.00 0.00 0.00 4.85
323 347 4.840005 GGGGGCGCTTTCCTCTCG 62.840 72.222 7.64 0.00 0.00 4.04
324 348 4.840005 CGGGGGCGCTTTCCTCTC 62.840 72.222 7.64 0.00 0.00 3.20
518 551 1.899054 CAGCGATAGGAGCTCGGGA 60.899 63.158 7.83 0.00 44.06 5.14
537 570 3.877357 CATCGCAGGCAGCAGCAG 61.877 66.667 2.65 0.00 46.13 4.24
694 739 0.513820 TCCGCGTGAATTCGAAAACC 59.486 50.000 4.92 0.00 0.00 3.27
771 817 3.617531 CGATCCTAACAGCCAAACAGAGT 60.618 47.826 0.00 0.00 0.00 3.24
782 835 6.954944 TCAAAAGAACAAACGATCCTAACAG 58.045 36.000 0.00 0.00 0.00 3.16
796 849 3.002656 CGAGAAGCAAGCTCAAAAGAACA 59.997 43.478 0.00 0.00 32.67 3.18
798 851 2.549754 CCGAGAAGCAAGCTCAAAAGAA 59.450 45.455 0.00 0.00 32.67 2.52
800 853 1.400759 GCCGAGAAGCAAGCTCAAAAG 60.401 52.381 0.00 0.00 32.67 2.27
828 881 1.899814 TCAACTCCGATTGTACAGGCT 59.100 47.619 0.00 0.00 0.00 4.58
835 888 3.689649 GCTACCATTTCAACTCCGATTGT 59.310 43.478 0.00 0.00 0.00 2.71
846 916 1.208535 CCACCTACCGCTACCATTTCA 59.791 52.381 0.00 0.00 0.00 2.69
925 1000 1.457455 CCTCCTGCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
937 1012 2.767496 CAGCCTCCCCTCCTCCTG 60.767 72.222 0.00 0.00 0.00 3.86
1072 1149 0.934496 TGGCAAACGAACAACTCTCG 59.066 50.000 0.00 0.00 42.06 4.04
1193 1271 1.000521 TGCATGAAAGAGGGCCTGG 60.001 57.895 12.95 0.00 0.00 4.45
1215 1293 1.067354 GCTTAAGGCATGCTTGTGCTT 60.067 47.619 18.92 13.94 44.45 3.91
1228 1306 0.889994 TGGCAACAGCATGCTTAAGG 59.110 50.000 19.98 9.56 46.17 2.69
1286 1364 7.359097 GCAGTCTCATCTTAAGATTATGCTTCG 60.359 40.741 15.49 2.33 31.91 3.79
1302 1380 6.364706 CGGATTAATACAAGAGCAGTCTCATC 59.635 42.308 0.00 0.00 41.81 2.92
1340 1420 3.611766 CGTCGAGAATCTGTTTCAGGTCA 60.612 47.826 0.00 0.00 36.75 4.02
1355 1435 1.005037 ATTGCTTGTGGCGTCGAGA 60.005 52.632 0.00 0.00 45.43 4.04
1358 1438 1.133253 CTCATTGCTTGTGGCGTCG 59.867 57.895 0.00 0.00 45.43 5.12
1361 1441 2.180017 GGCTCATTGCTTGTGGCG 59.820 61.111 0.00 0.00 45.43 5.69
1388 1468 2.842058 GCCAGGAGGGATCCATGG 59.158 66.667 15.23 15.90 40.01 3.66
1479 1567 7.094805 ACGATAAGCACATTAGAAGCAAGAAAA 60.095 33.333 0.00 0.00 0.00 2.29
1484 1572 4.935205 ACACGATAAGCACATTAGAAGCAA 59.065 37.500 0.00 0.00 0.00 3.91
1487 1575 5.734498 GCAAACACGATAAGCACATTAGAAG 59.266 40.000 0.00 0.00 0.00 2.85
1559 1647 3.790789 GCCGCCAATTTTTACCAGTATCG 60.791 47.826 0.00 0.00 0.00 2.92
1598 1686 3.120991 CCACTCGCGTTTGTAAAGAAGAG 60.121 47.826 5.77 0.00 0.00 2.85
1605 1693 1.434555 CCATCCACTCGCGTTTGTAA 58.565 50.000 5.77 0.00 0.00 2.41
1626 1717 7.120579 TGTCCAACGCATTATCAAGATTAGTTT 59.879 33.333 0.00 0.00 0.00 2.66
1627 1718 6.597672 TGTCCAACGCATTATCAAGATTAGTT 59.402 34.615 0.00 0.00 0.00 2.24
1656 1747 5.005740 AGAGCAAAACACAGCATCAGATTA 58.994 37.500 0.00 0.00 0.00 1.75
1670 1761 6.084326 TCAATCCCTACAAAAGAGCAAAAC 57.916 37.500 0.00 0.00 0.00 2.43
1681 1772 3.849574 TCCAGGACAATCAATCCCTACAA 59.150 43.478 0.00 0.00 36.86 2.41
1814 1918 5.480642 TGAGGAAGATAAGATGAGATGCC 57.519 43.478 0.00 0.00 0.00 4.40
1859 1964 6.040842 AGTGCCTGCAATTCCGATTATATTTT 59.959 34.615 0.00 0.00 0.00 1.82
1891 1996 7.008332 TCCCACTAGAATCGATATACTGGAAA 58.992 38.462 0.00 0.00 0.00 3.13
2020 2125 5.989777 AGTACAATGTTACACTCACTTGTCC 59.010 40.000 4.80 0.00 0.00 4.02
2074 2179 4.299155 AGAAACATGTCTACGACACAGTG 58.701 43.478 0.00 0.00 45.65 3.66
2095 2200 4.153986 CGCAGAAAACTAATCAGCACAAG 58.846 43.478 0.00 0.00 30.53 3.16
2171 2276 2.503765 ACGGTCATTGTCATATCCACCA 59.496 45.455 0.00 0.00 0.00 4.17
2534 2642 6.667414 AGGAGGATGTTTAACATAAATGGCAA 59.333 34.615 10.82 0.00 39.27 4.52
3113 3225 7.309133 CCATAACTTTGGTTTAGTCATGAGCAA 60.309 37.037 0.00 0.00 36.92 3.91
3277 3390 4.813697 GGTGAAGCATCTGAAAGGATAGAC 59.186 45.833 0.00 0.00 0.00 2.59
3370 3483 0.032540 GCACAGAAACCAAAGCCAGG 59.967 55.000 0.00 0.00 0.00 4.45
3534 3655 7.631510 TTGTATCTTCTCCCCATTATCATCA 57.368 36.000 0.00 0.00 0.00 3.07
3549 3670 5.220605 GCAGTCCGGTGTAAATTGTATCTTC 60.221 44.000 0.00 0.00 0.00 2.87
3563 3684 4.003648 AGAATTTAAGAAGCAGTCCGGTG 58.996 43.478 0.00 0.00 0.00 4.94
3658 3779 9.473640 AGTAATATTTTTACCTTACTAGCGCTC 57.526 33.333 16.34 0.00 33.75 5.03
3822 3943 2.877786 TGCGTTGGCTATAATGACCATG 59.122 45.455 0.00 0.00 40.82 3.66
3831 3952 1.480545 TCTCTGCTTGCGTTGGCTATA 59.519 47.619 0.00 0.00 40.82 1.31
4103 4224 4.627035 GTGCTTCCAAAAATATCCTGTTGC 59.373 41.667 0.00 0.00 0.00 4.17
4181 4302 1.216990 CCTGGGAGGGAACATAAGCT 58.783 55.000 0.00 0.00 0.00 3.74
4222 4343 1.673665 GGTGCCACTGCTTGAGGAG 60.674 63.158 0.00 0.00 39.57 3.69
4223 4344 2.431683 GGTGCCACTGCTTGAGGA 59.568 61.111 0.00 0.00 38.71 3.71
4224 4345 2.674380 GGGTGCCACTGCTTGAGG 60.674 66.667 0.00 0.00 38.71 3.86
4225 4346 0.896940 ATTGGGTGCCACTGCTTGAG 60.897 55.000 0.00 0.00 38.71 3.02
4226 4347 0.403655 TATTGGGTGCCACTGCTTGA 59.596 50.000 0.00 0.00 38.71 3.02
4227 4348 0.527565 GTATTGGGTGCCACTGCTTG 59.472 55.000 0.00 0.00 38.71 4.01
4228 4349 0.405585 AGTATTGGGTGCCACTGCTT 59.594 50.000 0.00 0.00 38.71 3.91
4229 4350 0.035056 GAGTATTGGGTGCCACTGCT 60.035 55.000 0.00 0.00 38.71 4.24
4230 4351 0.322456 TGAGTATTGGGTGCCACTGC 60.322 55.000 0.00 0.00 30.78 4.40
4231 4352 2.019249 CATGAGTATTGGGTGCCACTG 58.981 52.381 0.00 0.00 30.78 3.66
4232 4353 1.683011 GCATGAGTATTGGGTGCCACT 60.683 52.381 0.00 0.00 30.78 4.00
4233 4354 0.740737 GCATGAGTATTGGGTGCCAC 59.259 55.000 0.00 0.00 30.78 5.01
4234 4355 0.625316 AGCATGAGTATTGGGTGCCA 59.375 50.000 0.00 0.00 36.50 4.92
4235 4356 1.027357 CAGCATGAGTATTGGGTGCC 58.973 55.000 0.00 0.00 39.69 5.01
4236 4357 0.383231 GCAGCATGAGTATTGGGTGC 59.617 55.000 0.00 0.00 45.71 5.01
4237 4358 1.945394 GAGCAGCATGAGTATTGGGTG 59.055 52.381 0.00 0.00 39.69 4.61
4238 4359 1.133976 GGAGCAGCATGAGTATTGGGT 60.134 52.381 0.00 0.00 39.69 4.51
4239 4360 1.602311 GGAGCAGCATGAGTATTGGG 58.398 55.000 0.00 0.00 39.69 4.12
4240 4361 1.134007 TGGGAGCAGCATGAGTATTGG 60.134 52.381 0.00 0.00 39.69 3.16
4241 4362 2.336945 TGGGAGCAGCATGAGTATTG 57.663 50.000 0.00 0.00 39.69 1.90
4242 4363 2.174210 ACATGGGAGCAGCATGAGTATT 59.826 45.455 0.00 0.00 39.69 1.89
4243 4364 1.773052 ACATGGGAGCAGCATGAGTAT 59.227 47.619 0.00 0.00 39.69 2.12
4244 4365 1.206878 ACATGGGAGCAGCATGAGTA 58.793 50.000 0.00 0.00 39.69 2.59
4245 4366 0.330604 AACATGGGAGCAGCATGAGT 59.669 50.000 0.00 0.00 39.69 3.41
4246 4367 1.134367 CAAACATGGGAGCAGCATGAG 59.866 52.381 0.00 0.00 39.69 2.90
4247 4368 1.179152 CAAACATGGGAGCAGCATGA 58.821 50.000 0.00 0.00 39.69 3.07
4248 4369 0.459585 GCAAACATGGGAGCAGCATG 60.460 55.000 0.00 0.00 40.87 4.06
4249 4370 0.613853 AGCAAACATGGGAGCAGCAT 60.614 50.000 0.00 0.00 0.00 3.79
4250 4371 1.228644 AGCAAACATGGGAGCAGCA 60.229 52.632 0.00 0.00 0.00 4.41
4251 4372 1.246056 TGAGCAAACATGGGAGCAGC 61.246 55.000 0.00 0.00 0.00 5.25
4294 4415 4.951715 CCTGAGAAAATGATGATGGGTTCA 59.048 41.667 0.00 0.00 39.12 3.18
4375 4496 0.976641 TTGAGGTGGCTGTGTAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
4376 4497 0.685097 GTTGAGGTGGCTGTGTAGGA 59.315 55.000 0.00 0.00 0.00 2.94
4377 4498 0.396435 TGTTGAGGTGGCTGTGTAGG 59.604 55.000 0.00 0.00 0.00 3.18
4378 4499 2.079158 CATGTTGAGGTGGCTGTGTAG 58.921 52.381 0.00 0.00 0.00 2.74
4379 4500 1.881925 GCATGTTGAGGTGGCTGTGTA 60.882 52.381 0.00 0.00 0.00 2.90
4380 4501 1.174712 GCATGTTGAGGTGGCTGTGT 61.175 55.000 0.00 0.00 0.00 3.72
4381 4502 0.892358 AGCATGTTGAGGTGGCTGTG 60.892 55.000 0.00 0.00 32.76 3.66
4382 4503 0.892358 CAGCATGTTGAGGTGGCTGT 60.892 55.000 2.97 0.00 45.11 4.40
4383 4504 1.880894 CAGCATGTTGAGGTGGCTG 59.119 57.895 2.97 0.00 44.91 4.85
4384 4505 1.975407 GCAGCATGTTGAGGTGGCT 60.975 57.895 14.38 0.00 39.31 4.75
4385 4506 2.270257 TGCAGCATGTTGAGGTGGC 61.270 57.895 14.38 0.00 39.31 5.01
4386 4507 1.582968 GTGCAGCATGTTGAGGTGG 59.417 57.895 14.38 0.00 39.31 4.61
4387 4508 1.174078 TGGTGCAGCATGTTGAGGTG 61.174 55.000 15.99 0.00 39.31 4.00
4388 4509 0.251474 ATGGTGCAGCATGTTGAGGT 60.251 50.000 29.45 4.45 39.31 3.85
4389 4510 0.454600 GATGGTGCAGCATGTTGAGG 59.545 55.000 34.35 0.00 39.31 3.86
4390 4511 1.170442 TGATGGTGCAGCATGTTGAG 58.830 50.000 34.35 0.00 39.31 3.02
4391 4512 1.842052 ATGATGGTGCAGCATGTTGA 58.158 45.000 34.35 15.98 39.10 3.18
4392 4513 2.665649 AATGATGGTGCAGCATGTTG 57.334 45.000 34.35 5.00 39.68 3.33
4393 4514 2.933492 GCAAATGATGGTGCAGCATGTT 60.933 45.455 34.35 24.02 39.68 2.71
4394 4515 1.404986 GCAAATGATGGTGCAGCATGT 60.405 47.619 34.35 19.93 39.68 3.21
4395 4516 1.134818 AGCAAATGATGGTGCAGCATG 60.135 47.619 34.35 22.09 39.68 4.06
4396 4517 1.136305 GAGCAAATGATGGTGCAGCAT 59.864 47.619 30.31 30.31 42.52 3.79
4397 4518 0.528924 GAGCAAATGATGGTGCAGCA 59.471 50.000 22.56 22.56 43.42 4.41
4398 4519 0.179119 GGAGCAAATGATGGTGCAGC 60.179 55.000 9.47 9.47 45.99 5.25
4401 4522 0.743097 GGAGGAGCAAATGATGGTGC 59.257 55.000 0.00 0.00 46.95 5.01
4402 4523 1.747355 GTGGAGGAGCAAATGATGGTG 59.253 52.381 0.00 0.00 40.59 4.17
4403 4524 1.355381 TGTGGAGGAGCAAATGATGGT 59.645 47.619 0.00 0.00 43.97 3.55
4404 4525 2.022195 CTGTGGAGGAGCAAATGATGG 58.978 52.381 0.00 0.00 0.00 3.51
4405 4526 1.404391 GCTGTGGAGGAGCAAATGATG 59.596 52.381 0.00 0.00 36.40 3.07
4406 4527 1.684248 GGCTGTGGAGGAGCAAATGAT 60.684 52.381 0.00 0.00 38.27 2.45
4407 4528 0.322816 GGCTGTGGAGGAGCAAATGA 60.323 55.000 0.00 0.00 38.27 2.57
4408 4529 0.609957 TGGCTGTGGAGGAGCAAATG 60.610 55.000 0.00 0.00 38.27 2.32
4409 4530 0.610232 GTGGCTGTGGAGGAGCAAAT 60.610 55.000 0.00 0.00 38.27 2.32
4410 4531 1.228245 GTGGCTGTGGAGGAGCAAA 60.228 57.895 0.00 0.00 38.27 3.68
4411 4532 2.431683 GTGGCTGTGGAGGAGCAA 59.568 61.111 0.00 0.00 38.27 3.91
4412 4533 3.640407 GGTGGCTGTGGAGGAGCA 61.640 66.667 0.00 0.00 38.27 4.26
4413 4534 3.322318 GAGGTGGCTGTGGAGGAGC 62.322 68.421 0.00 0.00 35.57 4.70
4414 4535 1.483595 TTGAGGTGGCTGTGGAGGAG 61.484 60.000 0.00 0.00 0.00 3.69
4415 4536 1.461268 TTGAGGTGGCTGTGGAGGA 60.461 57.895 0.00 0.00 0.00 3.71
4416 4537 1.302832 GTTGAGGTGGCTGTGGAGG 60.303 63.158 0.00 0.00 0.00 4.30
4417 4538 0.037303 ATGTTGAGGTGGCTGTGGAG 59.963 55.000 0.00 0.00 0.00 3.86
4418 4539 0.250858 CATGTTGAGGTGGCTGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
4419 4540 1.870055 GCATGTTGAGGTGGCTGTGG 61.870 60.000 0.00 0.00 0.00 4.17
4420 4541 0.892358 AGCATGTTGAGGTGGCTGTG 60.892 55.000 0.00 0.00 32.76 3.66
4421 4542 0.892358 CAGCATGTTGAGGTGGCTGT 60.892 55.000 2.97 0.00 45.11 4.40
4422 4543 1.880894 CAGCATGTTGAGGTGGCTG 59.119 57.895 2.97 0.00 44.91 4.85
4423 4544 1.975407 GCAGCATGTTGAGGTGGCT 60.975 57.895 14.38 0.00 39.31 4.75
4424 4545 2.270257 TGCAGCATGTTGAGGTGGC 61.270 57.895 14.38 0.00 39.31 5.01
4425 4546 1.582968 GTGCAGCATGTTGAGGTGG 59.417 57.895 14.38 0.00 39.31 4.61
4426 4547 1.174078 TGGTGCAGCATGTTGAGGTG 61.174 55.000 15.99 0.00 39.31 4.00
4427 4548 0.251474 ATGGTGCAGCATGTTGAGGT 60.251 50.000 29.45 4.45 39.31 3.85
4428 4549 0.454600 GATGGTGCAGCATGTTGAGG 59.545 55.000 34.35 0.00 39.31 3.86
4429 4550 1.170442 TGATGGTGCAGCATGTTGAG 58.830 50.000 34.35 0.00 39.31 3.02
4430 4551 1.842052 ATGATGGTGCAGCATGTTGA 58.158 45.000 34.35 15.98 39.10 3.18
4431 4552 2.665649 AATGATGGTGCAGCATGTTG 57.334 45.000 34.35 5.00 39.68 3.33
4432 4553 2.933492 GCAAATGATGGTGCAGCATGTT 60.933 45.455 34.35 24.02 39.68 2.71
4433 4554 1.404986 GCAAATGATGGTGCAGCATGT 60.405 47.619 34.35 19.93 39.68 3.21
4434 4555 1.134818 AGCAAATGATGGTGCAGCATG 60.135 47.619 34.35 22.09 39.68 4.06
4435 4556 1.136305 GAGCAAATGATGGTGCAGCAT 59.864 47.619 30.31 30.31 42.52 3.79
4436 4557 0.528924 GAGCAAATGATGGTGCAGCA 59.471 50.000 22.56 22.56 43.42 4.41
4437 4558 0.179119 GGAGCAAATGATGGTGCAGC 60.179 55.000 9.47 9.47 45.99 5.25
4440 4561 0.743097 GGAGGAGCAAATGATGGTGC 59.257 55.000 0.00 0.00 46.95 5.01
4441 4562 1.747355 GTGGAGGAGCAAATGATGGTG 59.253 52.381 0.00 0.00 40.59 4.17
4442 4563 1.355381 TGTGGAGGAGCAAATGATGGT 59.645 47.619 0.00 0.00 43.97 3.55
4443 4564 2.022195 CTGTGGAGGAGCAAATGATGG 58.978 52.381 0.00 0.00 0.00 3.51
4444 4565 1.404391 GCTGTGGAGGAGCAAATGATG 59.596 52.381 0.00 0.00 36.40 3.07
4445 4566 1.684248 GGCTGTGGAGGAGCAAATGAT 60.684 52.381 0.00 0.00 38.27 2.45
4446 4567 0.322816 GGCTGTGGAGGAGCAAATGA 60.323 55.000 0.00 0.00 38.27 2.57
4447 4568 0.609957 TGGCTGTGGAGGAGCAAATG 60.610 55.000 0.00 0.00 38.27 2.32
4448 4569 0.610232 GTGGCTGTGGAGGAGCAAAT 60.610 55.000 0.00 0.00 38.27 2.32
4449 4570 1.228245 GTGGCTGTGGAGGAGCAAA 60.228 57.895 0.00 0.00 38.27 3.68
4450 4571 2.431683 GTGGCTGTGGAGGAGCAA 59.568 61.111 0.00 0.00 38.27 3.91
4451 4572 3.640407 GGTGGCTGTGGAGGAGCA 61.640 66.667 0.00 0.00 38.27 4.26
4452 4573 3.322318 GAGGTGGCTGTGGAGGAGC 62.322 68.421 0.00 0.00 35.57 4.70
4464 4585 1.310933 GGAGCTGCATGTTGAGGTGG 61.311 60.000 0.00 0.00 0.00 4.61
4484 4605 2.785269 TGATGGGCCTGATGGTAGATTT 59.215 45.455 4.53 0.00 35.27 2.17
4577 4734 1.003355 AGATGCGTGTTGAGGTGGG 60.003 57.895 0.00 0.00 0.00 4.61
4589 4746 0.098376 GGAAGCTTTGCTGAGATGCG 59.902 55.000 0.00 0.00 39.62 4.73
4593 4750 0.326264 GGGAGGAAGCTTTGCTGAGA 59.674 55.000 0.00 0.00 39.62 3.27
4649 4806 1.470996 GCTGAGATGCCCCTCGAGAT 61.471 60.000 15.71 0.00 35.99 2.75
4841 4998 6.549364 ACTTACCACCAGAAATGTTGAAATCA 59.451 34.615 0.00 0.00 0.00 2.57
4859 5016 3.756434 GCATAGACAAAAGCCACTTACCA 59.244 43.478 0.00 0.00 0.00 3.25
4960 5133 2.898729 AGTCCACTCCAATATCTGCG 57.101 50.000 0.00 0.00 0.00 5.18
4981 5154 1.737236 TCCTTGCGGTTGATTGAATCG 59.263 47.619 0.18 0.00 41.44 3.34
5065 5238 2.192443 CCAGAGCCAGAGCCCATG 59.808 66.667 0.00 0.00 41.25 3.66
5071 5244 2.119655 GCCAATGCCAGAGCCAGAG 61.120 63.158 0.00 0.00 38.69 3.35
5212 5385 2.534990 TGTTGGTTCATTCCCATTCCC 58.465 47.619 0.00 0.00 0.00 3.97
5213 5386 3.306710 GGTTGTTGGTTCATTCCCATTCC 60.307 47.826 0.00 0.00 0.00 3.01
5214 5387 3.306710 GGGTTGTTGGTTCATTCCCATTC 60.307 47.826 0.00 0.00 34.48 2.67
5215 5388 2.637382 GGGTTGTTGGTTCATTCCCATT 59.363 45.455 0.00 0.00 34.48 3.16
5216 5389 2.256306 GGGTTGTTGGTTCATTCCCAT 58.744 47.619 0.00 0.00 34.48 4.00
5217 5390 1.062886 TGGGTTGTTGGTTCATTCCCA 60.063 47.619 0.00 0.00 38.48 4.37
5388 5567 4.996434 GAGGCCGCATCATCCCCG 62.996 72.222 0.00 0.00 0.00 5.73
5443 5625 4.540153 CCCATCTGGTTGTAGCCG 57.460 61.111 0.00 0.00 0.00 5.52
5523 5705 1.878953 TTCTCAAACCCTCGCTGTTC 58.121 50.000 0.00 0.00 0.00 3.18
5524 5706 2.341846 TTTCTCAAACCCTCGCTGTT 57.658 45.000 0.00 0.00 0.00 3.16
5858 6050 3.409651 GCGCGAACAAAAACAAAAATTCG 59.590 39.130 12.10 0.00 41.31 3.34
5865 6057 1.927895 AATGGCGCGAACAAAAACAA 58.072 40.000 12.10 0.00 0.00 2.83
5870 6062 0.662970 GCTCAAATGGCGCGAACAAA 60.663 50.000 12.10 0.00 0.00 2.83
5871 6063 1.081509 GCTCAAATGGCGCGAACAA 60.082 52.632 12.10 0.00 0.00 2.83
5872 6064 1.790090 TTGCTCAAATGGCGCGAACA 61.790 50.000 12.10 8.66 0.00 3.18
5873 6065 1.081509 TTGCTCAAATGGCGCGAAC 60.082 52.632 12.10 1.21 0.00 3.95
5874 6066 1.081509 GTTGCTCAAATGGCGCGAA 60.082 52.632 12.10 0.00 0.00 4.70
5875 6067 1.585267 ATGTTGCTCAAATGGCGCGA 61.585 50.000 12.10 0.00 0.00 5.87
5876 6068 0.733566 AATGTTGCTCAAATGGCGCG 60.734 50.000 0.00 0.00 0.00 6.86
5877 6069 1.127213 CAAATGTTGCTCAAATGGCGC 59.873 47.619 0.00 0.00 0.00 6.53
5878 6070 2.406130 ACAAATGTTGCTCAAATGGCG 58.594 42.857 0.00 0.00 0.00 5.69
5879 6071 5.638657 TGATAACAAATGTTGCTCAAATGGC 59.361 36.000 8.99 0.00 38.90 4.40
5880 6072 7.837202 ATGATAACAAATGTTGCTCAAATGG 57.163 32.000 8.99 0.00 38.90 3.16
5881 6073 9.791820 TCTATGATAACAAATGTTGCTCAAATG 57.208 29.630 8.99 6.75 38.90 2.32
5924 6160 4.272504 TCCGCAAGTTTCTAGTCTTGTTTG 59.727 41.667 18.31 12.27 41.83 2.93
5935 6171 3.561725 CACTCTTCTTTCCGCAAGTTTCT 59.438 43.478 0.00 0.00 33.66 2.52
5942 6178 3.478857 TTTACCACTCTTCTTTCCGCA 57.521 42.857 0.00 0.00 0.00 5.69
5943 6179 4.823790 TTTTTACCACTCTTCTTTCCGC 57.176 40.909 0.00 0.00 0.00 5.54
5944 6180 6.803154 AGATTTTTACCACTCTTCTTTCCG 57.197 37.500 0.00 0.00 0.00 4.30
5946 6182 9.713713 ACTCTAGATTTTTACCACTCTTCTTTC 57.286 33.333 0.00 0.00 0.00 2.62
5952 6188 9.495572 CTCAAAACTCTAGATTTTTACCACTCT 57.504 33.333 17.48 0.00 0.00 3.24
5953 6189 9.490379 TCTCAAAACTCTAGATTTTTACCACTC 57.510 33.333 17.48 0.00 0.00 3.51
5955 6191 8.722394 CCTCTCAAAACTCTAGATTTTTACCAC 58.278 37.037 17.48 0.00 0.00 4.16
5959 6195 6.594159 CGGCCTCTCAAAACTCTAGATTTTTA 59.406 38.462 17.48 5.20 0.00 1.52
5961 6197 4.938226 CGGCCTCTCAAAACTCTAGATTTT 59.062 41.667 0.00 2.39 0.00 1.82
5963 6199 3.118592 CCGGCCTCTCAAAACTCTAGATT 60.119 47.826 0.00 0.00 0.00 2.40
6063 6332 1.446272 CCTTCCTCGTGGCGTCTTC 60.446 63.158 0.00 0.00 0.00 2.87
6134 6409 0.031111 TCTATGACCTGGACCTGGGG 60.031 60.000 20.61 9.35 0.00 4.96
6276 6551 2.012673 GGTCGACGACACCTACTACAT 58.987 52.381 27.77 0.00 33.68 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.