Multiple sequence alignment - TraesCS6A01G375000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G375000 chr6A 100.000 5093 0 0 1 5093 597690411 597685319 0.000000e+00 9406.0
1 TraesCS6A01G375000 chr6D 94.446 3511 153 24 746 4230 451774121 451770627 0.000000e+00 5365.0
2 TraesCS6A01G375000 chr6D 91.636 538 27 5 4236 4761 451768888 451768357 0.000000e+00 728.0
3 TraesCS6A01G375000 chr6D 89.130 230 25 0 4762 4991 451766769 451766540 2.320000e-73 287.0
4 TraesCS6A01G375000 chr6D 81.845 336 40 12 134 461 451774771 451774449 3.910000e-66 263.0
5 TraesCS6A01G375000 chr6D 76.584 363 73 7 4741 5093 174338751 174339111 6.730000e-44 189.0
6 TraesCS6A01G375000 chr6D 90.000 80 5 2 545 623 451774288 451774211 3.240000e-17 100.0
7 TraesCS6A01G375000 chr6D 90.141 71 6 1 5023 5093 385710699 385710768 1.950000e-14 91.6
8 TraesCS6A01G375000 chr6B 94.892 2212 82 18 746 2934 686182539 686180336 0.000000e+00 3430.0
9 TraesCS6A01G375000 chr6B 94.247 1182 59 6 2947 4121 686180265 686179086 0.000000e+00 1797.0
10 TraesCS6A01G375000 chr6B 81.959 194 25 8 547 734 686182710 686182521 6.830000e-34 156.0
11 TraesCS6A01G375000 chr4B 83.761 351 55 2 4744 5093 57805045 57804696 1.060000e-86 331.0
12 TraesCS6A01G375000 chr4B 76.267 375 67 13 4741 5093 654040913 654041287 4.050000e-41 180.0
13 TraesCS6A01G375000 chr4A 78.187 353 73 3 4743 5092 737291101 737291452 6.640000e-54 222.0
14 TraesCS6A01G375000 chr2A 78.116 361 67 8 4744 5093 141880375 141880016 8.590000e-53 219.0
15 TraesCS6A01G375000 chr2A 77.747 364 65 10 4741 5091 719307553 719307913 5.170000e-50 209.0
16 TraesCS6A01G375000 chr2A 79.110 292 51 8 4809 5091 207761078 207761368 5.200000e-45 193.0
17 TraesCS6A01G375000 chr2A 82.297 209 29 4 4893 5093 77536946 77537154 1.880000e-39 174.0
18 TraesCS6A01G375000 chr2A 75.890 365 69 10 4741 5089 104879350 104879711 8.770000e-38 169.0
19 TraesCS6A01G375000 chr2B 77.961 363 68 4 4741 5091 689874879 689875241 3.090000e-52 217.0
20 TraesCS6A01G375000 chr2B 77.083 144 26 6 2780 2920 53662838 53662699 5.470000e-10 76.8
21 TraesCS6A01G375000 chr3B 78.395 324 54 10 4741 5053 13187210 13187528 4.020000e-46 196.0
22 TraesCS6A01G375000 chr1B 77.950 322 52 9 4790 5093 5089327 5089647 3.130000e-42 183.0
23 TraesCS6A01G375000 chr4D 81.111 180 23 4 4913 5082 452544792 452544970 3.200000e-27 134.0
24 TraesCS6A01G375000 chr2D 84.127 126 19 1 4744 4868 183581662 183581537 2.490000e-23 121.0
25 TraesCS6A01G375000 chr2D 93.750 48 3 0 4648 4695 77148486 77148533 7.070000e-09 73.1
26 TraesCS6A01G375000 chr2D 86.667 60 4 2 2804 2859 64064004 64063945 4.260000e-06 63.9
27 TraesCS6A01G375000 chr7D 89.362 94 8 1 5002 5093 571187973 571188066 3.220000e-22 117.0
28 TraesCS6A01G375000 chr7D 91.111 45 4 0 4651 4695 41993913 41993957 1.530000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G375000 chr6A 597685319 597690411 5092 True 9406.000000 9406 100.0000 1 5093 1 chr6A.!!$R1 5092
1 TraesCS6A01G375000 chr6D 451766540 451774771 8231 True 1348.600000 5365 89.4114 134 4991 5 chr6D.!!$R1 4857
2 TraesCS6A01G375000 chr6B 686179086 686182710 3624 True 1794.333333 3430 90.3660 547 4121 3 chr6B.!!$R1 3574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.108585 AAGCTGAGGGACGAAAAGCA 59.891 50.000 0.00 0.00 36.32 3.91 F
953 1097 0.242286 CAGTAGCAGTGCAGTCTCGT 59.758 55.000 19.20 0.00 0.00 4.18 F
961 1105 0.516001 GTGCAGTCTCGTACGTCTCA 59.484 55.000 16.05 9.51 0.00 3.27 F
1890 2043 0.609406 GCAAGGACTTCACCTTCCCC 60.609 60.000 0.00 0.00 46.94 4.81 F
2634 2787 1.270550 GTCGACGGTAAGGTCAAGGAA 59.729 52.381 0.00 0.00 36.73 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1176 0.533032 CCTCCAGGGAGTCGTTCTTC 59.467 60.0 14.0 0.0 40.44 2.87 R
2661 2814 1.433053 CGAGTGCGGTTTGGTTGACA 61.433 55.0 0.0 0.0 0.00 3.58 R
2691 2844 2.576191 CACCTTGGGGATGGTCTTTCTA 59.424 50.0 0.0 0.0 33.75 2.10 R
2999 3218 1.107945 CGAGGAGAAAGAGGGAGGTC 58.892 60.0 0.0 0.0 0.00 3.85 R
4266 6225 0.254178 AGCTGTCGCTGGAATGGATT 59.746 50.0 0.0 0.0 46.86 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.741915 TGAAGTCAAAACCAACCGCC 59.258 50.000 0.00 0.00 0.00 6.13
20 21 0.741915 GAAGTCAAAACCAACCGCCA 59.258 50.000 0.00 0.00 0.00 5.69
21 22 0.744281 AAGTCAAAACCAACCGCCAG 59.256 50.000 0.00 0.00 0.00 4.85
22 23 1.106944 AGTCAAAACCAACCGCCAGG 61.107 55.000 0.00 0.00 45.13 4.45
23 24 1.104577 GTCAAAACCAACCGCCAGGA 61.105 55.000 0.00 0.00 41.02 3.86
24 25 0.395862 TCAAAACCAACCGCCAGGAA 60.396 50.000 0.00 0.00 41.02 3.36
25 26 0.249280 CAAAACCAACCGCCAGGAAC 60.249 55.000 0.00 0.00 41.02 3.62
26 27 1.396607 AAAACCAACCGCCAGGAACC 61.397 55.000 0.00 0.00 41.02 3.62
27 28 2.575455 AAACCAACCGCCAGGAACCA 62.575 55.000 0.00 0.00 41.02 3.67
28 29 2.203422 CCAACCGCCAGGAACCAA 60.203 61.111 0.00 0.00 41.02 3.67
29 30 1.830408 CCAACCGCCAGGAACCAAA 60.830 57.895 0.00 0.00 41.02 3.28
30 31 1.184970 CCAACCGCCAGGAACCAAAT 61.185 55.000 0.00 0.00 41.02 2.32
31 32 1.540267 CAACCGCCAGGAACCAAATA 58.460 50.000 0.00 0.00 41.02 1.40
32 33 2.099405 CAACCGCCAGGAACCAAATAT 58.901 47.619 0.00 0.00 41.02 1.28
33 34 3.283751 CAACCGCCAGGAACCAAATATA 58.716 45.455 0.00 0.00 41.02 0.86
34 35 3.876309 ACCGCCAGGAACCAAATATAT 57.124 42.857 0.00 0.00 41.02 0.86
35 36 3.751518 ACCGCCAGGAACCAAATATATC 58.248 45.455 0.00 0.00 41.02 1.63
36 37 3.394606 ACCGCCAGGAACCAAATATATCT 59.605 43.478 0.00 0.00 41.02 1.98
37 38 4.595781 ACCGCCAGGAACCAAATATATCTA 59.404 41.667 0.00 0.00 41.02 1.98
38 39 5.072600 ACCGCCAGGAACCAAATATATCTAA 59.927 40.000 0.00 0.00 41.02 2.10
39 40 6.180472 CCGCCAGGAACCAAATATATCTAAT 58.820 40.000 0.00 0.00 41.02 1.73
40 41 7.037873 ACCGCCAGGAACCAAATATATCTAATA 60.038 37.037 0.00 0.00 41.02 0.98
41 42 7.280205 CCGCCAGGAACCAAATATATCTAATAC 59.720 40.741 0.00 0.00 41.02 1.89
42 43 7.280205 CGCCAGGAACCAAATATATCTAATACC 59.720 40.741 0.00 0.00 0.00 2.73
43 44 8.107095 GCCAGGAACCAAATATATCTAATACCA 58.893 37.037 0.00 0.00 0.00 3.25
57 58 7.807977 ATCTAATACCATTGTAAGTTGCAGG 57.192 36.000 0.00 0.00 0.00 4.85
58 59 6.953101 TCTAATACCATTGTAAGTTGCAGGA 58.047 36.000 6.29 0.00 0.00 3.86
59 60 5.897377 AATACCATTGTAAGTTGCAGGAC 57.103 39.130 6.29 0.00 0.00 3.85
60 61 3.222173 ACCATTGTAAGTTGCAGGACA 57.778 42.857 6.29 0.00 0.00 4.02
61 62 3.561143 ACCATTGTAAGTTGCAGGACAA 58.439 40.909 6.29 7.09 36.32 3.18
62 63 3.957497 ACCATTGTAAGTTGCAGGACAAA 59.043 39.130 6.29 0.00 40.82 2.83
63 64 4.404073 ACCATTGTAAGTTGCAGGACAAAA 59.596 37.500 6.29 0.00 40.82 2.44
64 65 5.105146 ACCATTGTAAGTTGCAGGACAAAAA 60.105 36.000 6.29 0.00 40.82 1.94
88 89 9.846248 AAAAATAACACTATTTGCTAAGCTGAG 57.154 29.630 0.00 0.00 37.70 3.35
89 90 7.559590 AATAACACTATTTGCTAAGCTGAGG 57.440 36.000 0.00 0.00 0.00 3.86
90 91 3.878778 ACACTATTTGCTAAGCTGAGGG 58.121 45.455 0.00 0.00 0.00 4.30
91 92 3.519510 ACACTATTTGCTAAGCTGAGGGA 59.480 43.478 0.00 0.00 0.00 4.20
92 93 3.873952 CACTATTTGCTAAGCTGAGGGAC 59.126 47.826 0.00 0.00 0.00 4.46
93 94 2.029838 ATTTGCTAAGCTGAGGGACG 57.970 50.000 0.00 0.00 0.00 4.79
94 95 0.973632 TTTGCTAAGCTGAGGGACGA 59.026 50.000 0.00 0.00 0.00 4.20
95 96 0.973632 TTGCTAAGCTGAGGGACGAA 59.026 50.000 0.00 0.00 0.00 3.85
96 97 0.973632 TGCTAAGCTGAGGGACGAAA 59.026 50.000 0.00 0.00 0.00 3.46
97 98 1.346395 TGCTAAGCTGAGGGACGAAAA 59.654 47.619 0.00 0.00 0.00 2.29
98 99 2.003301 GCTAAGCTGAGGGACGAAAAG 58.997 52.381 0.00 0.00 0.00 2.27
99 100 2.003301 CTAAGCTGAGGGACGAAAAGC 58.997 52.381 0.00 0.00 0.00 3.51
100 101 0.108585 AAGCTGAGGGACGAAAAGCA 59.891 50.000 0.00 0.00 36.32 3.91
101 102 0.603975 AGCTGAGGGACGAAAAGCAC 60.604 55.000 0.00 0.00 36.32 4.40
102 103 0.884704 GCTGAGGGACGAAAAGCACA 60.885 55.000 0.00 0.00 34.01 4.57
103 104 0.868406 CTGAGGGACGAAAAGCACAC 59.132 55.000 0.00 0.00 0.00 3.82
104 105 0.468226 TGAGGGACGAAAAGCACACT 59.532 50.000 0.00 0.00 0.00 3.55
105 106 1.149148 GAGGGACGAAAAGCACACTC 58.851 55.000 0.00 0.00 0.00 3.51
106 107 0.600255 AGGGACGAAAAGCACACTCG 60.600 55.000 0.00 0.00 38.53 4.18
108 109 0.935196 GGACGAAAAGCACACTCGTT 59.065 50.000 4.93 0.00 45.25 3.85
109 110 1.329599 GGACGAAAAGCACACTCGTTT 59.670 47.619 4.93 0.00 45.25 3.60
110 111 2.223180 GGACGAAAAGCACACTCGTTTT 60.223 45.455 4.93 0.00 45.25 2.43
111 112 3.027029 GACGAAAAGCACACTCGTTTTC 58.973 45.455 4.93 0.00 45.25 2.29
112 113 2.676342 ACGAAAAGCACACTCGTTTTCT 59.324 40.909 0.00 0.00 42.86 2.52
113 114 3.126343 ACGAAAAGCACACTCGTTTTCTT 59.874 39.130 0.00 0.00 42.86 2.52
114 115 4.095610 CGAAAAGCACACTCGTTTTCTTT 58.904 39.130 0.00 0.00 37.82 2.52
115 116 4.557301 CGAAAAGCACACTCGTTTTCTTTT 59.443 37.500 0.00 0.00 37.82 2.27
116 117 5.060446 CGAAAAGCACACTCGTTTTCTTTTT 59.940 36.000 0.00 0.00 37.82 1.94
143 144 8.897752 TCATCATCTCAATATATACGTGAGGAG 58.102 37.037 18.61 13.65 39.42 3.69
146 147 6.819397 TCTCAATATATACGTGAGGAGGTG 57.181 41.667 18.61 0.00 39.42 4.00
149 150 7.287005 TCTCAATATATACGTGAGGAGGTGTTT 59.713 37.037 18.61 0.00 39.42 2.83
154 155 7.886629 ATATACGTGAGGAGGTGTTTACTTA 57.113 36.000 0.00 0.00 0.00 2.24
165 166 3.761752 GGTGTTTACTTACCATGGTGCAT 59.238 43.478 28.17 14.11 36.94 3.96
166 167 4.944930 GGTGTTTACTTACCATGGTGCATA 59.055 41.667 28.17 13.08 36.94 3.14
181 186 3.130869 GGTGCATATGCTTGGAATGACAA 59.869 43.478 27.13 0.47 42.66 3.18
195 200 7.606456 CTTGGAATGACAAGCTAGGTAACTTAA 59.394 37.037 0.00 0.00 42.69 1.85
227 232 1.117150 GCATCCTTTGCCATCCATGT 58.883 50.000 0.00 0.00 46.15 3.21
228 233 1.202486 GCATCCTTTGCCATCCATGTG 60.202 52.381 0.00 0.00 46.15 3.21
229 234 2.380941 CATCCTTTGCCATCCATGTGA 58.619 47.619 0.00 0.00 0.00 3.58
232 246 1.617804 CCTTTGCCATCCATGTGAGGT 60.618 52.381 0.00 0.00 0.00 3.85
238 252 1.224075 CATCCATGTGAGGTGATCGC 58.776 55.000 0.00 0.00 39.00 4.58
245 259 1.455773 TGAGGTGATCGCTCGGGAT 60.456 57.895 6.18 0.00 0.00 3.85
255 269 4.609018 CTCGGGATCGGCGCCATT 62.609 66.667 28.98 13.31 36.95 3.16
256 270 4.169696 TCGGGATCGGCGCCATTT 62.170 61.111 28.98 10.24 36.95 2.32
257 271 3.209097 CGGGATCGGCGCCATTTT 61.209 61.111 28.98 7.24 0.00 1.82
258 272 2.412937 GGGATCGGCGCCATTTTG 59.587 61.111 28.98 9.94 0.00 2.44
259 273 2.414785 GGGATCGGCGCCATTTTGT 61.415 57.895 28.98 4.43 0.00 2.83
260 274 1.226660 GGATCGGCGCCATTTTGTG 60.227 57.895 28.98 8.23 0.00 3.33
261 275 1.873572 GATCGGCGCCATTTTGTGC 60.874 57.895 28.98 2.10 40.99 4.57
309 323 1.073216 CGTCACACTCATCCTCGTGC 61.073 60.000 0.00 0.00 34.58 5.34
310 324 0.737715 GTCACACTCATCCTCGTGCC 60.738 60.000 0.00 0.00 34.58 5.01
313 327 3.071206 ACTCATCCTCGTGCCGCT 61.071 61.111 0.00 0.00 0.00 5.52
314 328 2.279120 CTCATCCTCGTGCCGCTC 60.279 66.667 0.00 0.00 0.00 5.03
330 345 1.771044 CTCGCACAACGTACGTTCC 59.229 57.895 29.67 18.97 44.19 3.62
332 347 1.950130 CGCACAACGTACGTTCCCA 60.950 57.895 29.67 0.00 36.00 4.37
333 348 1.566077 GCACAACGTACGTTCCCAC 59.434 57.895 29.67 15.85 36.00 4.61
339 354 0.319297 ACGTACGTTCCCACTGCTTC 60.319 55.000 16.72 0.00 0.00 3.86
342 357 0.606604 TACGTTCCCACTGCTTCCTC 59.393 55.000 0.00 0.00 0.00 3.71
343 358 1.376037 CGTTCCCACTGCTTCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
349 364 1.500474 CCACTGCTTCCTCCCTGATA 58.500 55.000 0.00 0.00 0.00 2.15
352 367 1.115467 CTGCTTCCTCCCTGATACGT 58.885 55.000 0.00 0.00 0.00 3.57
370 385 2.253452 GCATCGATCGCCATTGCC 59.747 61.111 11.09 0.00 0.00 4.52
379 394 3.498397 CGATCGCCATTGCCTATAAAAGT 59.502 43.478 0.26 0.00 0.00 2.66
421 436 3.640967 CAGCCTAGCTTAGATCCTCAAGT 59.359 47.826 0.00 0.00 36.40 3.16
473 488 7.664552 AGAGTAGACTAGTGCTCTCTTACTA 57.335 40.000 0.00 0.00 33.51 1.82
479 535 8.220755 AGACTAGTGCTCTCTTACTATCTTTG 57.779 38.462 0.00 0.00 0.00 2.77
486 542 7.984617 GTGCTCTCTTACTATCTTTGATCCTTT 59.015 37.037 0.00 0.00 0.00 3.11
488 544 8.421002 GCTCTCTTACTATCTTTGATCCTTTCT 58.579 37.037 0.00 0.00 0.00 2.52
489 545 9.748708 CTCTCTTACTATCTTTGATCCTTTCTG 57.251 37.037 0.00 0.00 0.00 3.02
495 551 8.785329 ACTATCTTTGATCCTTTCTGTCTTTC 57.215 34.615 0.00 0.00 0.00 2.62
498 554 7.736447 TCTTTGATCCTTTCTGTCTTTCTTC 57.264 36.000 0.00 0.00 0.00 2.87
503 559 5.630415 TCCTTTCTGTCTTTCTTCCTTCA 57.370 39.130 0.00 0.00 0.00 3.02
510 566 5.593909 TCTGTCTTTCTTCCTTCATTTTGCA 59.406 36.000 0.00 0.00 0.00 4.08
514 570 7.769970 TGTCTTTCTTCCTTCATTTTGCATTTT 59.230 29.630 0.00 0.00 0.00 1.82
515 571 8.066000 GTCTTTCTTCCTTCATTTTGCATTTTG 58.934 33.333 0.00 0.00 0.00 2.44
516 572 7.986320 TCTTTCTTCCTTCATTTTGCATTTTGA 59.014 29.630 0.00 0.00 0.00 2.69
517 573 7.481275 TTCTTCCTTCATTTTGCATTTTGAC 57.519 32.000 0.00 0.00 0.00 3.18
518 574 6.819284 TCTTCCTTCATTTTGCATTTTGACT 58.181 32.000 0.00 0.00 0.00 3.41
519 575 6.702723 TCTTCCTTCATTTTGCATTTTGACTG 59.297 34.615 0.00 0.00 0.00 3.51
520 576 5.916318 TCCTTCATTTTGCATTTTGACTGT 58.084 33.333 0.00 0.00 0.00 3.55
521 577 6.347696 TCCTTCATTTTGCATTTTGACTGTT 58.652 32.000 0.00 0.00 0.00 3.16
522 578 6.479660 TCCTTCATTTTGCATTTTGACTGTTC 59.520 34.615 0.00 0.00 0.00 3.18
523 579 6.293027 CCTTCATTTTGCATTTTGACTGTTCC 60.293 38.462 0.00 0.00 0.00 3.62
524 580 5.916318 TCATTTTGCATTTTGACTGTTCCT 58.084 33.333 0.00 0.00 0.00 3.36
525 581 5.984926 TCATTTTGCATTTTGACTGTTCCTC 59.015 36.000 0.00 0.00 0.00 3.71
526 582 4.998671 TTTGCATTTTGACTGTTCCTCA 57.001 36.364 0.00 0.00 0.00 3.86
528 584 3.819368 TGCATTTTGACTGTTCCTCAGA 58.181 40.909 1.79 0.00 46.27 3.27
529 585 3.817084 TGCATTTTGACTGTTCCTCAGAG 59.183 43.478 1.79 0.00 46.27 3.35
530 586 4.067896 GCATTTTGACTGTTCCTCAGAGA 58.932 43.478 0.00 0.00 46.27 3.10
531 587 4.516698 GCATTTTGACTGTTCCTCAGAGAA 59.483 41.667 0.00 0.00 46.27 2.87
532 588 5.182760 GCATTTTGACTGTTCCTCAGAGAAT 59.817 40.000 0.00 0.00 46.27 2.40
533 589 6.294397 GCATTTTGACTGTTCCTCAGAGAATT 60.294 38.462 0.00 0.00 46.27 2.17
534 590 7.094634 GCATTTTGACTGTTCCTCAGAGAATTA 60.095 37.037 0.00 0.00 46.27 1.40
546 602 6.045955 CCTCAGAGAATTAGCTTCAGTAACC 58.954 44.000 0.00 0.00 36.24 2.85
547 603 5.978814 TCAGAGAATTAGCTTCAGTAACCC 58.021 41.667 0.00 0.00 36.24 4.11
548 604 4.806247 CAGAGAATTAGCTTCAGTAACCCG 59.194 45.833 0.00 0.00 36.24 5.28
550 606 5.046520 AGAGAATTAGCTTCAGTAACCCGTT 60.047 40.000 0.00 0.00 36.24 4.44
551 607 5.557866 AGAATTAGCTTCAGTAACCCGTTT 58.442 37.500 0.00 0.00 36.24 3.60
552 608 5.642491 AGAATTAGCTTCAGTAACCCGTTTC 59.358 40.000 0.00 0.00 36.24 2.78
560 616 4.634199 TCAGTAACCCGTTTCTTTACCTG 58.366 43.478 0.00 0.00 0.00 4.00
617 727 1.200020 GCGTTCTTGCTAGCAATTGGT 59.800 47.619 29.40 15.47 35.20 3.67
622 732 1.814394 CTTGCTAGCAATTGGTCTGCA 59.186 47.619 29.40 24.63 42.48 4.41
630 740 2.662866 CAATTGGTCTGCAGGATCCAT 58.337 47.619 15.82 4.12 0.00 3.41
631 741 3.028850 CAATTGGTCTGCAGGATCCATT 58.971 45.455 15.82 13.02 0.00 3.16
632 742 2.425143 TTGGTCTGCAGGATCCATTC 57.575 50.000 15.82 2.62 0.00 2.67
633 743 0.548031 TGGTCTGCAGGATCCATTCC 59.452 55.000 15.82 7.86 45.85 3.01
652 765 3.892284 TCCAAGGTAAACTCACAAGCAA 58.108 40.909 0.00 0.00 0.00 3.91
662 775 2.906389 ACTCACAAGCAAGTCCATCCTA 59.094 45.455 0.00 0.00 0.00 2.94
669 782 3.019564 AGCAAGTCCATCCTAAACATGC 58.980 45.455 0.00 0.00 37.76 4.06
670 783 3.019564 GCAAGTCCATCCTAAACATGCT 58.980 45.455 0.00 0.00 35.41 3.79
671 784 3.181493 GCAAGTCCATCCTAAACATGCTG 60.181 47.826 0.00 0.00 35.41 4.41
672 785 2.648059 AGTCCATCCTAAACATGCTGC 58.352 47.619 0.00 0.00 0.00 5.25
701 825 8.143835 CCTGTTCTTTCTTGGAAAAACATACAT 58.856 33.333 14.44 0.00 0.00 2.29
705 829 8.364129 TCTTTCTTGGAAAAACATACATTTGC 57.636 30.769 0.00 0.00 0.00 3.68
707 831 7.475771 TTCTTGGAAAAACATACATTTGCAC 57.524 32.000 0.00 0.00 36.74 4.57
713 837 9.019656 TGGAAAAACATACATTTGCACTAGTAT 57.980 29.630 0.00 0.00 32.88 2.12
722 846 7.369803 ACATTTGCACTAGTATATATGCTGC 57.630 36.000 13.06 9.51 38.90 5.25
723 847 7.164122 ACATTTGCACTAGTATATATGCTGCT 58.836 34.615 13.06 0.93 38.90 4.24
724 848 7.663081 ACATTTGCACTAGTATATATGCTGCTT 59.337 33.333 13.06 0.00 38.90 3.91
725 849 7.425577 TTTGCACTAGTATATATGCTGCTTG 57.574 36.000 13.06 8.23 38.90 4.01
726 850 6.101650 TGCACTAGTATATATGCTGCTTGT 57.898 37.500 13.06 4.69 38.90 3.16
727 851 6.159293 TGCACTAGTATATATGCTGCTTGTC 58.841 40.000 13.06 5.22 38.90 3.18
728 852 5.578727 GCACTAGTATATATGCTGCTTGTCC 59.421 44.000 13.06 0.00 35.16 4.02
729 853 6.573289 GCACTAGTATATATGCTGCTTGTCCT 60.573 42.308 13.06 0.00 35.16 3.85
730 854 7.382110 CACTAGTATATATGCTGCTTGTCCTT 58.618 38.462 13.06 0.00 0.00 3.36
731 855 7.875041 CACTAGTATATATGCTGCTTGTCCTTT 59.125 37.037 13.06 0.00 0.00 3.11
732 856 8.432805 ACTAGTATATATGCTGCTTGTCCTTTT 58.567 33.333 13.06 0.00 0.00 2.27
733 857 7.736447 AGTATATATGCTGCTTGTCCTTTTC 57.264 36.000 2.13 0.00 0.00 2.29
734 858 5.679734 ATATATGCTGCTTGTCCTTTTCG 57.320 39.130 0.00 0.00 0.00 3.46
735 859 1.896220 ATGCTGCTTGTCCTTTTCGA 58.104 45.000 0.00 0.00 0.00 3.71
736 860 1.674359 TGCTGCTTGTCCTTTTCGAA 58.326 45.000 0.00 0.00 0.00 3.71
737 861 2.020720 TGCTGCTTGTCCTTTTCGAAA 58.979 42.857 6.47 6.47 0.00 3.46
738 862 2.425312 TGCTGCTTGTCCTTTTCGAAAA 59.575 40.909 21.35 21.35 0.00 2.29
739 863 3.119316 TGCTGCTTGTCCTTTTCGAAAAA 60.119 39.130 22.67 7.78 0.00 1.94
806 931 5.674525 CTGAACTCCTACTGCATCCATTAA 58.325 41.667 0.00 0.00 0.00 1.40
952 1096 0.457509 CCAGTAGCAGTGCAGTCTCG 60.458 60.000 19.20 1.35 0.00 4.04
953 1097 0.242286 CAGTAGCAGTGCAGTCTCGT 59.758 55.000 19.20 0.00 0.00 4.18
954 1098 1.468914 CAGTAGCAGTGCAGTCTCGTA 59.531 52.381 19.20 0.00 0.00 3.43
961 1105 0.516001 GTGCAGTCTCGTACGTCTCA 59.484 55.000 16.05 9.51 0.00 3.27
985 1131 5.066505 ACGACTTCTTTTTCAAATCAGCAGT 59.933 36.000 0.00 0.00 0.00 4.40
997 1147 1.675310 CAGCAGTTTCCCGCCATCA 60.675 57.895 0.00 0.00 0.00 3.07
1890 2043 0.609406 GCAAGGACTTCACCTTCCCC 60.609 60.000 0.00 0.00 46.94 4.81
2262 2415 2.490217 CTCACCTCCGGCTACGTG 59.510 66.667 0.00 0.00 38.78 4.49
2403 2556 2.032528 TACCTCGTCGTGTCCGGT 59.967 61.111 0.00 0.00 33.95 5.28
2529 2682 4.851179 GGCCCGTCCCATTCCGAC 62.851 72.222 0.00 0.00 0.00 4.79
2634 2787 1.270550 GTCGACGGTAAGGTCAAGGAA 59.729 52.381 0.00 0.00 36.73 3.36
2691 2844 2.363147 GCACTCGTCCTCCTCCCT 60.363 66.667 0.00 0.00 0.00 4.20
2763 2916 3.128938 CACTCCCAAGTAAGTACTCTCCG 59.871 52.174 0.00 0.00 34.99 4.63
2764 2917 3.245193 ACTCCCAAGTAAGTACTCTCCGT 60.245 47.826 0.00 0.00 34.99 4.69
2765 2918 3.350833 TCCCAAGTAAGTACTCTCCGTC 58.649 50.000 0.00 0.00 34.99 4.79
2999 3218 8.873830 ACTTCAGACAAATCTTATAACACATCG 58.126 33.333 0.00 0.00 30.42 3.84
3029 3248 2.933495 TTCTCCTCGTCGTACCAATG 57.067 50.000 0.00 0.00 0.00 2.82
3042 3261 6.074835 CGTCGTACCAATGATCTTCTACAATG 60.075 42.308 0.00 0.00 0.00 2.82
3135 3357 3.712907 GGGTCCCTGCAGCGGTTA 61.713 66.667 8.66 0.00 0.00 2.85
3138 3360 1.448013 GTCCCTGCAGCGGTTACTC 60.448 63.158 8.66 0.00 0.00 2.59
3165 3387 2.735762 GCTGAAGAACGCCTACTACCTG 60.736 54.545 0.00 0.00 0.00 4.00
3213 3435 2.280797 GACAGCAAGGTGGACGCA 60.281 61.111 4.16 0.00 0.00 5.24
3219 3441 4.681978 AAGGTGGACGCAGCGACC 62.682 66.667 26.79 26.79 41.53 4.79
3345 3567 2.806856 CTCCGACGACGACTACGGG 61.807 68.421 9.28 5.52 44.57 5.28
3528 3750 2.203294 AACGCCACCGCCTTCTTT 60.203 55.556 0.00 0.00 38.22 2.52
3603 3825 4.388499 GGCGCCGTCTTCTTCCCA 62.388 66.667 12.58 0.00 0.00 4.37
3669 3891 3.110178 GACGCCAAGACGAACCCG 61.110 66.667 0.00 0.00 42.50 5.28
3852 4074 2.283145 AGGACAACAAGCTCAAGCAT 57.717 45.000 4.59 0.00 45.16 3.79
3948 4170 4.020617 TCCAAGCTCCCCGTGCTG 62.021 66.667 0.00 0.00 41.03 4.41
4027 4249 2.601666 AGGACGTCCTCAGCTGCA 60.602 61.111 31.69 0.00 44.77 4.41
4041 4263 4.657408 TGCATCGCCACCCAGCAA 62.657 61.111 0.00 0.00 31.42 3.91
4102 4328 1.134280 CCGCCTTCTGAGTTCCATGAT 60.134 52.381 0.00 0.00 0.00 2.45
4113 4339 4.227197 GAGTTCCATGATCTTCCCTCCTA 58.773 47.826 0.00 0.00 0.00 2.94
4151 4377 0.808453 TAAACTACGGGCTGCATCGC 60.808 55.000 13.08 0.00 0.00 4.58
4192 4418 7.944554 TCATTAGACTCTCCAAATTTGTTTCCT 59.055 33.333 16.73 8.37 0.00 3.36
4223 4449 5.167803 CGAATGTTTGTATCGATTCTTTGCG 59.832 40.000 1.71 0.00 38.82 4.85
4230 4456 6.415798 TGTATCGATTCTTTGCGAATTCAA 57.584 33.333 1.71 0.00 42.31 2.69
4232 4458 6.906678 TGTATCGATTCTTTGCGAATTCAATG 59.093 34.615 1.71 0.00 42.31 2.82
4234 4460 3.853103 CGATTCTTTGCGAATTCAATGCA 59.147 39.130 6.22 4.32 42.31 3.96
4245 6204 5.323900 CGAATTCAATGCACTTTACGATGT 58.676 37.500 6.22 0.00 0.00 3.06
4254 6213 8.736742 CAATGCACTTTACGATGTAATGATTTC 58.263 33.333 8.90 0.00 0.00 2.17
4266 6225 9.196552 CGATGTAATGATTTCAGTGCTAGATAA 57.803 33.333 0.00 0.00 0.00 1.75
4274 6233 9.060347 TGATTTCAGTGCTAGATAAATCCATTC 57.940 33.333 0.00 0.00 36.28 2.67
4279 6238 4.153117 GTGCTAGATAAATCCATTCCAGCG 59.847 45.833 0.00 0.00 0.00 5.18
4283 6242 4.384056 AGATAAATCCATTCCAGCGACAG 58.616 43.478 0.00 0.00 0.00 3.51
4401 6360 4.204891 CGCCGCCTAACTTTCGCG 62.205 66.667 0.00 0.00 45.32 5.87
4515 6474 2.095415 CACACTACCTGATTGACGTCGA 60.095 50.000 8.21 8.21 0.00 4.20
4543 6502 4.412796 CCATCGGCATATGTCCATCTAT 57.587 45.455 14.11 2.55 0.00 1.98
4551 6510 0.318441 ATGTCCATCTATGCCGACGG 59.682 55.000 10.29 10.29 0.00 4.79
4566 6525 2.189521 CGGCCCCGACAATAAGCT 59.810 61.111 0.00 0.00 42.83 3.74
4584 6543 3.400505 GCTGTTGGCGTAGAAATTACC 57.599 47.619 0.00 0.00 0.00 2.85
4591 6562 6.149142 TGTTGGCGTAGAAATTACCGTTATTT 59.851 34.615 0.00 0.00 0.00 1.40
4606 6577 4.628333 CCGTTATTTCGGTAGTGTCATGTT 59.372 41.667 0.00 0.00 44.77 2.71
4686 6657 2.622942 GCTGGACTTGTCAAATCCAACA 59.377 45.455 16.14 0.00 41.95 3.33
4694 6665 4.647424 TGTCAAATCCAACACCTCAAAC 57.353 40.909 0.00 0.00 0.00 2.93
4699 6670 0.817634 TCCAACACCTCAAACGGCTG 60.818 55.000 0.00 0.00 0.00 4.85
4700 6671 0.817634 CCAACACCTCAAACGGCTGA 60.818 55.000 0.00 0.00 0.00 4.26
4701 6672 0.307760 CAACACCTCAAACGGCTGAC 59.692 55.000 0.00 0.00 0.00 3.51
4702 6673 0.818040 AACACCTCAAACGGCTGACC 60.818 55.000 0.00 0.00 0.00 4.02
4712 6683 4.611961 GGCTGACCGTAGAAACCC 57.388 61.111 0.00 0.00 0.00 4.11
4749 6720 6.973229 TTACATTTAACCTAGCTTTCGGAC 57.027 37.500 0.00 0.00 0.00 4.79
4771 8329 0.246360 CAGATGTACCGCACACCTCA 59.754 55.000 0.00 0.00 40.86 3.86
4787 8345 2.031012 CAGGTGAGGCAGCAACGA 59.969 61.111 0.00 0.00 33.95 3.85
4805 8363 1.731433 GACACACCTAGCGCCGGATA 61.731 60.000 19.07 0.00 0.00 2.59
4806 8364 1.113517 ACACACCTAGCGCCGGATAT 61.114 55.000 19.07 0.00 0.00 1.63
4807 8365 0.667487 CACACCTAGCGCCGGATATG 60.667 60.000 19.07 9.94 0.00 1.78
4818 8376 0.040157 CCGGATATGTGCGCCATTTG 60.040 55.000 15.07 5.09 37.91 2.32
4829 8387 3.309506 CCATTTGGGCGGGCACAA 61.310 61.111 3.84 3.84 37.59 3.33
4838 8396 2.785425 GCGGGCACAATGGATTCCC 61.785 63.158 0.00 0.00 0.00 3.97
4853 8411 1.248785 TTCCCGACAGAAGGAGTCCG 61.249 60.000 2.76 0.00 32.57 4.79
4856 8414 0.961358 CCGACAGAAGGAGTCCGAGT 60.961 60.000 2.76 0.88 32.41 4.18
4873 8431 4.631247 TGCTGCCTCGCACAAGCT 62.631 61.111 0.00 0.00 39.10 3.74
4880 8438 1.301677 CCTCGCACAAGCTTTCTCCC 61.302 60.000 0.00 0.00 39.10 4.30
4917 8475 3.801997 CCAGGCGGCCATCTCCTT 61.802 66.667 23.09 0.00 0.00 3.36
4921 8479 2.279784 GCGGCCATCTCCTTCTCG 60.280 66.667 2.24 0.00 0.00 4.04
4969 8527 0.467384 CGGATCTGGAGGTGAAGCAT 59.533 55.000 0.00 0.00 0.00 3.79
4985 8543 0.810648 GCATTCAAATCCGCTGTCCA 59.189 50.000 0.00 0.00 0.00 4.02
4991 8549 0.038166 AAATCCGCTGTCCACCATGT 59.962 50.000 0.00 0.00 0.00 3.21
4992 8550 0.392998 AATCCGCTGTCCACCATGTC 60.393 55.000 0.00 0.00 0.00 3.06
4993 8551 2.578163 ATCCGCTGTCCACCATGTCG 62.578 60.000 0.00 0.00 0.00 4.35
4994 8552 2.815211 CGCTGTCCACCATGTCGG 60.815 66.667 0.00 0.00 42.50 4.79
4995 8553 2.662596 GCTGTCCACCATGTCGGA 59.337 61.111 0.00 0.00 38.63 4.55
4996 8554 1.448540 GCTGTCCACCATGTCGGAG 60.449 63.158 0.66 0.00 38.63 4.63
4997 8555 1.888436 GCTGTCCACCATGTCGGAGA 61.888 60.000 0.66 0.00 38.63 3.71
5010 8568 2.680352 GGAGACGGCCAGAGGTGA 60.680 66.667 2.24 0.00 0.00 4.02
5011 8569 2.716017 GGAGACGGCCAGAGGTGAG 61.716 68.421 2.24 0.00 0.00 3.51
5012 8570 3.363844 GAGACGGCCAGAGGTGAGC 62.364 68.421 2.24 0.00 0.00 4.26
5013 8571 3.386237 GACGGCCAGAGGTGAGCT 61.386 66.667 2.24 0.00 0.00 4.09
5014 8572 2.925170 ACGGCCAGAGGTGAGCTT 60.925 61.111 2.24 0.00 0.00 3.74
5015 8573 2.435586 CGGCCAGAGGTGAGCTTG 60.436 66.667 2.24 0.00 0.00 4.01
5016 8574 2.045536 GGCCAGAGGTGAGCTTGG 60.046 66.667 0.00 8.01 0.00 3.61
5017 8575 2.045536 GCCAGAGGTGAGCTTGGG 60.046 66.667 12.43 6.59 0.00 4.12
5018 8576 2.900106 GCCAGAGGTGAGCTTGGGT 61.900 63.158 12.43 0.00 0.00 4.51
5019 8577 1.002868 CCAGAGGTGAGCTTGGGTG 60.003 63.158 0.00 0.00 0.00 4.61
5020 8578 1.002868 CAGAGGTGAGCTTGGGTGG 60.003 63.158 0.00 0.00 0.00 4.61
5021 8579 2.360475 GAGGTGAGCTTGGGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
5022 8580 3.177884 AGGTGAGCTTGGGTGGCA 61.178 61.111 0.00 0.00 0.00 4.92
5023 8581 2.674380 GGTGAGCTTGGGTGGCAG 60.674 66.667 0.00 0.00 0.00 4.85
5024 8582 2.431683 GTGAGCTTGGGTGGCAGA 59.568 61.111 0.00 0.00 0.00 4.26
5025 8583 1.673665 GTGAGCTTGGGTGGCAGAG 60.674 63.158 0.00 0.00 0.00 3.35
5026 8584 2.045536 GAGCTTGGGTGGCAGAGG 60.046 66.667 0.00 0.00 0.00 3.69
5027 8585 2.530151 AGCTTGGGTGGCAGAGGA 60.530 61.111 0.00 0.00 0.00 3.71
5028 8586 2.045536 GCTTGGGTGGCAGAGGAG 60.046 66.667 0.00 0.00 0.00 3.69
5029 8587 2.596851 GCTTGGGTGGCAGAGGAGA 61.597 63.158 0.00 0.00 0.00 3.71
5030 8588 1.601171 CTTGGGTGGCAGAGGAGAG 59.399 63.158 0.00 0.00 0.00 3.20
5031 8589 1.152030 TTGGGTGGCAGAGGAGAGT 60.152 57.895 0.00 0.00 0.00 3.24
5032 8590 1.483595 TTGGGTGGCAGAGGAGAGTG 61.484 60.000 0.00 0.00 0.00 3.51
5033 8591 2.664081 GGGTGGCAGAGGAGAGTGG 61.664 68.421 0.00 0.00 0.00 4.00
5034 8592 1.610673 GGTGGCAGAGGAGAGTGGA 60.611 63.158 0.00 0.00 0.00 4.02
5035 8593 1.612395 GGTGGCAGAGGAGAGTGGAG 61.612 65.000 0.00 0.00 0.00 3.86
5036 8594 0.902516 GTGGCAGAGGAGAGTGGAGT 60.903 60.000 0.00 0.00 0.00 3.85
5037 8595 0.704664 TGGCAGAGGAGAGTGGAGTA 59.295 55.000 0.00 0.00 0.00 2.59
5038 8596 1.077169 TGGCAGAGGAGAGTGGAGTAA 59.923 52.381 0.00 0.00 0.00 2.24
5039 8597 2.180276 GGCAGAGGAGAGTGGAGTAAA 58.820 52.381 0.00 0.00 0.00 2.01
5040 8598 2.167487 GGCAGAGGAGAGTGGAGTAAAG 59.833 54.545 0.00 0.00 0.00 1.85
5041 8599 2.829120 GCAGAGGAGAGTGGAGTAAAGT 59.171 50.000 0.00 0.00 0.00 2.66
5042 8600 3.367910 GCAGAGGAGAGTGGAGTAAAGTG 60.368 52.174 0.00 0.00 0.00 3.16
5043 8601 3.194542 CAGAGGAGAGTGGAGTAAAGTGG 59.805 52.174 0.00 0.00 0.00 4.00
5044 8602 1.903183 AGGAGAGTGGAGTAAAGTGGC 59.097 52.381 0.00 0.00 0.00 5.01
5045 8603 1.903183 GGAGAGTGGAGTAAAGTGGCT 59.097 52.381 0.00 0.00 0.00 4.75
5046 8604 3.097614 GGAGAGTGGAGTAAAGTGGCTA 58.902 50.000 0.00 0.00 0.00 3.93
5047 8605 3.131400 GGAGAGTGGAGTAAAGTGGCTAG 59.869 52.174 0.00 0.00 0.00 3.42
5048 8606 3.100671 AGAGTGGAGTAAAGTGGCTAGG 58.899 50.000 0.00 0.00 0.00 3.02
5049 8607 2.168728 GAGTGGAGTAAAGTGGCTAGGG 59.831 54.545 0.00 0.00 0.00 3.53
5050 8608 1.907255 GTGGAGTAAAGTGGCTAGGGT 59.093 52.381 0.00 0.00 0.00 4.34
5051 8609 2.305052 GTGGAGTAAAGTGGCTAGGGTT 59.695 50.000 0.00 0.00 0.00 4.11
5052 8610 2.983898 TGGAGTAAAGTGGCTAGGGTTT 59.016 45.455 0.00 0.00 0.00 3.27
5053 8611 3.244770 TGGAGTAAAGTGGCTAGGGTTTG 60.245 47.826 0.00 0.00 0.00 2.93
5054 8612 3.344515 GAGTAAAGTGGCTAGGGTTTGG 58.655 50.000 0.00 0.00 0.00 3.28
5055 8613 2.714793 AGTAAAGTGGCTAGGGTTTGGT 59.285 45.455 0.00 0.00 0.00 3.67
5056 8614 2.767644 AAAGTGGCTAGGGTTTGGTT 57.232 45.000 0.00 0.00 0.00 3.67
5057 8615 2.287977 AAGTGGCTAGGGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
5058 8616 0.036306 AGTGGCTAGGGTTTGGTTCG 59.964 55.000 0.00 0.00 0.00 3.95
5059 8617 0.958876 GTGGCTAGGGTTTGGTTCGG 60.959 60.000 0.00 0.00 0.00 4.30
5060 8618 2.044555 GGCTAGGGTTTGGTTCGGC 61.045 63.158 0.00 0.00 0.00 5.54
5061 8619 2.396157 GCTAGGGTTTGGTTCGGCG 61.396 63.158 0.00 0.00 0.00 6.46
5062 8620 1.294138 CTAGGGTTTGGTTCGGCGA 59.706 57.895 4.99 4.99 0.00 5.54
5063 8621 0.739813 CTAGGGTTTGGTTCGGCGAG 60.740 60.000 10.46 0.00 0.00 5.03
5064 8622 2.791501 TAGGGTTTGGTTCGGCGAGC 62.792 60.000 15.76 15.76 0.00 5.03
5065 8623 4.084888 GGTTTGGTTCGGCGAGCG 62.085 66.667 17.37 0.00 0.00 5.03
5066 8624 4.084888 GTTTGGTTCGGCGAGCGG 62.085 66.667 17.37 0.00 0.00 5.52
5067 8625 4.302509 TTTGGTTCGGCGAGCGGA 62.303 61.111 17.37 5.66 0.00 5.54
5077 8635 3.132139 CGAGCGGACGAGGAGGAA 61.132 66.667 0.00 0.00 35.09 3.36
5078 8636 2.482333 CGAGCGGACGAGGAGGAAT 61.482 63.158 0.00 0.00 35.09 3.01
5079 8637 1.164662 CGAGCGGACGAGGAGGAATA 61.165 60.000 0.00 0.00 35.09 1.75
5080 8638 1.249407 GAGCGGACGAGGAGGAATAT 58.751 55.000 0.00 0.00 0.00 1.28
5081 8639 2.434428 GAGCGGACGAGGAGGAATATA 58.566 52.381 0.00 0.00 0.00 0.86
5082 8640 3.018149 GAGCGGACGAGGAGGAATATAT 58.982 50.000 0.00 0.00 0.00 0.86
5083 8641 4.197750 GAGCGGACGAGGAGGAATATATA 58.802 47.826 0.00 0.00 0.00 0.86
5084 8642 4.794334 AGCGGACGAGGAGGAATATATAT 58.206 43.478 0.00 0.00 0.00 0.86
5085 8643 4.580995 AGCGGACGAGGAGGAATATATATG 59.419 45.833 0.00 0.00 0.00 1.78
5086 8644 4.261656 GCGGACGAGGAGGAATATATATGG 60.262 50.000 0.00 0.00 0.00 2.74
5087 8645 4.278669 CGGACGAGGAGGAATATATATGGG 59.721 50.000 0.00 0.00 0.00 4.00
5088 8646 4.589374 GGACGAGGAGGAATATATATGGGG 59.411 50.000 0.00 0.00 0.00 4.96
5089 8647 5.209659 GACGAGGAGGAATATATATGGGGT 58.790 45.833 0.00 0.00 0.00 4.95
5090 8648 5.209659 ACGAGGAGGAATATATATGGGGTC 58.790 45.833 0.00 0.00 0.00 4.46
5091 8649 4.278669 CGAGGAGGAATATATATGGGGTCG 59.721 50.000 0.00 0.00 0.00 4.79
5092 8650 4.557705 AGGAGGAATATATATGGGGTCGG 58.442 47.826 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.741915 GGCGGTTGGTTTTGACTTCA 59.258 50.000 0.00 0.00 0.00 3.02
1 2 0.741915 TGGCGGTTGGTTTTGACTTC 59.258 50.000 0.00 0.00 0.00 3.01
2 3 0.744281 CTGGCGGTTGGTTTTGACTT 59.256 50.000 0.00 0.00 0.00 3.01
3 4 1.106944 CCTGGCGGTTGGTTTTGACT 61.107 55.000 0.00 0.00 0.00 3.41
4 5 1.104577 TCCTGGCGGTTGGTTTTGAC 61.105 55.000 0.00 0.00 0.00 3.18
6 7 0.249280 GTTCCTGGCGGTTGGTTTTG 60.249 55.000 0.00 0.00 0.00 2.44
7 8 1.396607 GGTTCCTGGCGGTTGGTTTT 61.397 55.000 0.00 0.00 0.00 2.43
8 9 1.830847 GGTTCCTGGCGGTTGGTTT 60.831 57.895 0.00 0.00 0.00 3.27
9 10 2.203437 GGTTCCTGGCGGTTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
10 11 2.575455 TTTGGTTCCTGGCGGTTGGT 62.575 55.000 0.00 0.00 0.00 3.67
11 12 1.184970 ATTTGGTTCCTGGCGGTTGG 61.185 55.000 0.00 0.00 0.00 3.77
12 13 1.540267 TATTTGGTTCCTGGCGGTTG 58.460 50.000 0.00 0.00 0.00 3.77
13 14 2.525105 ATATTTGGTTCCTGGCGGTT 57.475 45.000 0.00 0.00 0.00 4.44
14 15 3.394606 AGATATATTTGGTTCCTGGCGGT 59.605 43.478 0.00 0.00 0.00 5.68
15 16 4.021102 AGATATATTTGGTTCCTGGCGG 57.979 45.455 0.00 0.00 0.00 6.13
16 17 7.280205 GGTATTAGATATATTTGGTTCCTGGCG 59.720 40.741 0.00 0.00 0.00 5.69
17 18 8.107095 TGGTATTAGATATATTTGGTTCCTGGC 58.893 37.037 0.00 0.00 0.00 4.85
31 32 9.507329 CCTGCAACTTACAATGGTATTAGATAT 57.493 33.333 0.00 0.00 0.00 1.63
32 33 8.710239 TCCTGCAACTTACAATGGTATTAGATA 58.290 33.333 0.00 0.00 0.00 1.98
33 34 7.499232 GTCCTGCAACTTACAATGGTATTAGAT 59.501 37.037 0.00 0.00 0.00 1.98
34 35 6.821665 GTCCTGCAACTTACAATGGTATTAGA 59.178 38.462 0.00 0.00 0.00 2.10
35 36 6.597672 TGTCCTGCAACTTACAATGGTATTAG 59.402 38.462 0.00 0.00 0.00 1.73
36 37 6.477253 TGTCCTGCAACTTACAATGGTATTA 58.523 36.000 0.00 0.00 0.00 0.98
37 38 5.321102 TGTCCTGCAACTTACAATGGTATT 58.679 37.500 0.00 0.00 0.00 1.89
38 39 4.917385 TGTCCTGCAACTTACAATGGTAT 58.083 39.130 0.00 0.00 0.00 2.73
39 40 4.359434 TGTCCTGCAACTTACAATGGTA 57.641 40.909 0.00 0.00 0.00 3.25
40 41 3.222173 TGTCCTGCAACTTACAATGGT 57.778 42.857 0.00 0.00 0.00 3.55
41 42 4.582701 TTTGTCCTGCAACTTACAATGG 57.417 40.909 0.00 0.00 36.72 3.16
62 63 9.846248 CTCAGCTTAGCAAATAGTGTTATTTTT 57.154 29.630 7.07 0.00 37.38 1.94
63 64 8.462016 CCTCAGCTTAGCAAATAGTGTTATTTT 58.538 33.333 7.07 0.00 37.38 1.82
64 65 7.067494 CCCTCAGCTTAGCAAATAGTGTTATTT 59.933 37.037 7.07 0.00 39.49 1.40
65 66 6.543831 CCCTCAGCTTAGCAAATAGTGTTATT 59.456 38.462 7.07 0.00 0.00 1.40
66 67 6.058183 CCCTCAGCTTAGCAAATAGTGTTAT 58.942 40.000 7.07 0.00 0.00 1.89
67 68 5.188948 TCCCTCAGCTTAGCAAATAGTGTTA 59.811 40.000 7.07 0.00 0.00 2.41
68 69 4.019321 TCCCTCAGCTTAGCAAATAGTGTT 60.019 41.667 7.07 0.00 0.00 3.32
69 70 3.519510 TCCCTCAGCTTAGCAAATAGTGT 59.480 43.478 7.07 0.00 0.00 3.55
70 71 3.873952 GTCCCTCAGCTTAGCAAATAGTG 59.126 47.826 7.07 0.00 0.00 2.74
71 72 3.430929 CGTCCCTCAGCTTAGCAAATAGT 60.431 47.826 7.07 0.00 0.00 2.12
72 73 3.126831 CGTCCCTCAGCTTAGCAAATAG 58.873 50.000 7.07 0.00 0.00 1.73
73 74 2.764010 TCGTCCCTCAGCTTAGCAAATA 59.236 45.455 7.07 0.00 0.00 1.40
74 75 1.555075 TCGTCCCTCAGCTTAGCAAAT 59.445 47.619 7.07 0.00 0.00 2.32
75 76 0.973632 TCGTCCCTCAGCTTAGCAAA 59.026 50.000 7.07 0.00 0.00 3.68
76 77 0.973632 TTCGTCCCTCAGCTTAGCAA 59.026 50.000 7.07 0.00 0.00 3.91
77 78 0.973632 TTTCGTCCCTCAGCTTAGCA 59.026 50.000 7.07 0.00 0.00 3.49
78 79 2.003301 CTTTTCGTCCCTCAGCTTAGC 58.997 52.381 0.00 0.00 0.00 3.09
79 80 2.003301 GCTTTTCGTCCCTCAGCTTAG 58.997 52.381 0.00 0.00 0.00 2.18
80 81 1.346395 TGCTTTTCGTCCCTCAGCTTA 59.654 47.619 0.00 0.00 0.00 3.09
81 82 0.108585 TGCTTTTCGTCCCTCAGCTT 59.891 50.000 0.00 0.00 0.00 3.74
82 83 0.603975 GTGCTTTTCGTCCCTCAGCT 60.604 55.000 0.00 0.00 0.00 4.24
83 84 0.884704 TGTGCTTTTCGTCCCTCAGC 60.885 55.000 0.00 0.00 0.00 4.26
84 85 0.868406 GTGTGCTTTTCGTCCCTCAG 59.132 55.000 0.00 0.00 0.00 3.35
85 86 0.468226 AGTGTGCTTTTCGTCCCTCA 59.532 50.000 0.00 0.00 0.00 3.86
86 87 1.149148 GAGTGTGCTTTTCGTCCCTC 58.851 55.000 0.00 0.00 0.00 4.30
87 88 0.600255 CGAGTGTGCTTTTCGTCCCT 60.600 55.000 0.00 0.00 0.00 4.20
88 89 0.878961 ACGAGTGTGCTTTTCGTCCC 60.879 55.000 0.00 0.00 43.35 4.46
89 90 0.935196 AACGAGTGTGCTTTTCGTCC 59.065 50.000 0.00 0.00 45.77 4.79
90 91 2.732001 AAACGAGTGTGCTTTTCGTC 57.268 45.000 0.00 0.00 45.77 4.20
92 93 3.319238 AGAAAACGAGTGTGCTTTTCG 57.681 42.857 0.00 0.00 38.42 3.46
93 94 6.389622 AAAAAGAAAACGAGTGTGCTTTTC 57.610 33.333 11.44 1.93 35.51 2.29
115 116 9.860898 CCTCACGTATATATTGAGATGATGAAA 57.139 33.333 19.09 0.00 39.36 2.69
116 117 9.243105 TCCTCACGTATATATTGAGATGATGAA 57.757 33.333 19.09 1.77 39.36 2.57
117 118 8.807948 TCCTCACGTATATATTGAGATGATGA 57.192 34.615 19.09 9.38 39.36 2.92
118 119 8.134261 CCTCCTCACGTATATATTGAGATGATG 58.866 40.741 19.09 7.84 39.36 3.07
119 120 7.836685 ACCTCCTCACGTATATATTGAGATGAT 59.163 37.037 19.09 5.97 39.36 2.45
120 121 7.121315 CACCTCCTCACGTATATATTGAGATGA 59.879 40.741 19.09 11.42 39.36 2.92
121 122 7.094162 ACACCTCCTCACGTATATATTGAGATG 60.094 40.741 19.09 14.70 39.36 2.90
122 123 6.948886 ACACCTCCTCACGTATATATTGAGAT 59.051 38.462 19.09 5.73 39.36 2.75
123 124 6.304624 ACACCTCCTCACGTATATATTGAGA 58.695 40.000 19.09 5.75 39.36 3.27
124 125 6.576662 ACACCTCCTCACGTATATATTGAG 57.423 41.667 13.71 13.71 37.17 3.02
125 126 6.971726 AACACCTCCTCACGTATATATTGA 57.028 37.500 0.00 0.00 0.00 2.57
126 127 8.358148 AGTAAACACCTCCTCACGTATATATTG 58.642 37.037 0.00 0.00 0.00 1.90
127 128 8.474710 AGTAAACACCTCCTCACGTATATATT 57.525 34.615 0.00 0.00 0.00 1.28
128 129 8.474710 AAGTAAACACCTCCTCACGTATATAT 57.525 34.615 0.00 0.00 0.00 0.86
129 130 7.886629 AAGTAAACACCTCCTCACGTATATA 57.113 36.000 0.00 0.00 0.00 0.86
130 131 6.786967 AAGTAAACACCTCCTCACGTATAT 57.213 37.500 0.00 0.00 0.00 0.86
131 132 6.095440 GGTAAGTAAACACCTCCTCACGTATA 59.905 42.308 0.00 0.00 0.00 1.47
132 133 5.105595 GGTAAGTAAACACCTCCTCACGTAT 60.106 44.000 0.00 0.00 0.00 3.06
136 137 4.612264 TGGTAAGTAAACACCTCCTCAC 57.388 45.455 0.00 0.00 35.73 3.51
139 140 3.914435 ACCATGGTAAGTAAACACCTCCT 59.086 43.478 18.10 0.00 35.73 3.69
143 144 3.150767 TGCACCATGGTAAGTAAACACC 58.849 45.455 19.28 0.00 35.24 4.16
146 147 5.299279 AGCATATGCACCATGGTAAGTAAAC 59.701 40.000 28.62 5.76 45.16 2.01
149 150 4.705110 AGCATATGCACCATGGTAAGTA 57.295 40.909 28.62 10.69 45.16 2.24
154 155 1.063792 TCCAAGCATATGCACCATGGT 60.064 47.619 28.62 13.00 45.16 3.55
181 186 4.487714 TGCATGCTTAAGTTACCTAGCT 57.512 40.909 20.33 0.00 34.77 3.32
182 187 5.100751 CATGCATGCTTAAGTTACCTAGC 57.899 43.478 20.33 0.00 0.00 3.42
212 217 1.108776 CCTCACATGGATGGCAAAGG 58.891 55.000 0.00 0.00 0.00 3.11
217 222 1.602311 GATCACCTCACATGGATGGC 58.398 55.000 0.00 0.00 0.00 4.40
220 225 1.069823 GAGCGATCACCTCACATGGAT 59.930 52.381 0.00 0.00 0.00 3.41
227 232 1.455773 ATCCCGAGCGATCACCTCA 60.456 57.895 0.00 0.00 0.00 3.86
228 233 1.287503 GATCCCGAGCGATCACCTC 59.712 63.158 0.00 0.00 38.83 3.85
229 234 2.556459 CGATCCCGAGCGATCACCT 61.556 63.158 0.00 0.00 43.75 4.00
232 246 3.978491 GCCGATCCCGAGCGATCA 61.978 66.667 3.55 0.00 43.75 2.92
238 252 4.609018 AATGGCGCCGATCCCGAG 62.609 66.667 23.90 0.00 38.22 4.63
252 266 1.125384 GCTTCATGCACGCACAAAATG 59.875 47.619 0.00 0.00 42.31 2.32
253 267 1.000060 AGCTTCATGCACGCACAAAAT 60.000 42.857 0.00 0.00 45.94 1.82
254 268 0.385029 AGCTTCATGCACGCACAAAA 59.615 45.000 0.00 0.00 45.94 2.44
255 269 0.040157 GAGCTTCATGCACGCACAAA 60.040 50.000 0.00 0.00 45.94 2.83
256 270 0.886043 AGAGCTTCATGCACGCACAA 60.886 50.000 0.00 0.00 45.94 3.33
257 271 1.301953 AGAGCTTCATGCACGCACA 60.302 52.632 0.00 0.00 45.94 4.57
258 272 1.134075 CAGAGCTTCATGCACGCAC 59.866 57.895 0.00 0.00 45.94 5.34
259 273 2.036571 CCAGAGCTTCATGCACGCA 61.037 57.895 0.00 0.00 45.94 5.24
260 274 2.789917 CCAGAGCTTCATGCACGC 59.210 61.111 0.00 0.00 45.94 5.34
261 275 2.789917 GCCAGAGCTTCATGCACG 59.210 61.111 0.00 0.00 45.94 5.34
280 294 0.880278 GAGTGTGACGAAAGCAGGCA 60.880 55.000 0.00 0.00 0.00 4.75
284 298 1.344438 AGGATGAGTGTGACGAAAGCA 59.656 47.619 0.00 0.00 0.00 3.91
309 323 3.823421 CGTACGTTGTGCGAGCGG 61.823 66.667 7.22 0.00 43.77 5.52
310 324 2.510308 GAACGTACGTTGTGCGAGCG 62.510 60.000 36.11 0.00 43.77 5.03
313 327 1.661197 GGGAACGTACGTTGTGCGA 60.661 57.895 36.11 0.00 43.77 5.10
314 328 1.950130 TGGGAACGTACGTTGTGCG 60.950 57.895 36.11 5.90 46.21 5.34
317 331 0.877213 GCAGTGGGAACGTACGTTGT 60.877 55.000 36.11 15.81 38.60 3.32
321 336 1.012486 GGAAGCAGTGGGAACGTACG 61.012 60.000 15.01 15.01 0.00 3.67
330 345 1.139853 GTATCAGGGAGGAAGCAGTGG 59.860 57.143 0.00 0.00 0.00 4.00
332 347 1.115467 CGTATCAGGGAGGAAGCAGT 58.885 55.000 0.00 0.00 0.00 4.40
333 348 1.115467 ACGTATCAGGGAGGAAGCAG 58.885 55.000 0.00 0.00 0.00 4.24
339 354 0.319040 CGATGCACGTATCAGGGAGG 60.319 60.000 0.00 0.00 37.22 4.30
342 357 1.702886 GATCGATGCACGTATCAGGG 58.297 55.000 0.54 0.00 43.13 4.45
343 358 1.331241 CGATCGATGCACGTATCAGG 58.669 55.000 10.26 0.00 43.13 3.86
349 364 1.521457 AATGGCGATCGATGCACGT 60.521 52.632 21.57 1.22 43.13 4.49
352 367 2.545596 GGCAATGGCGATCGATGCA 61.546 57.895 21.57 0.00 42.47 3.96
370 385 3.857052 TCGTGTGCTCCCACTTTTATAG 58.143 45.455 0.00 0.00 42.54 1.31
396 411 3.226777 GAGGATCTAAGCTAGGCTGTGA 58.773 50.000 0.00 0.00 39.62 3.58
401 416 3.006430 GGACTTGAGGATCTAAGCTAGGC 59.994 52.174 0.00 0.00 34.92 3.93
421 436 1.332889 ATCATGCTCTGCGTGGAGGA 61.333 55.000 11.20 6.26 44.68 3.71
461 476 7.667575 AAGGATCAAAGATAGTAAGAGAGCA 57.332 36.000 0.00 0.00 0.00 4.26
462 477 8.421002 AGAAAGGATCAAAGATAGTAAGAGAGC 58.579 37.037 0.00 0.00 0.00 4.09
463 478 9.748708 CAGAAAGGATCAAAGATAGTAAGAGAG 57.251 37.037 0.00 0.00 0.00 3.20
464 479 9.261035 ACAGAAAGGATCAAAGATAGTAAGAGA 57.739 33.333 0.00 0.00 0.00 3.10
465 480 9.528018 GACAGAAAGGATCAAAGATAGTAAGAG 57.472 37.037 0.00 0.00 0.00 2.85
466 481 9.261035 AGACAGAAAGGATCAAAGATAGTAAGA 57.739 33.333 0.00 0.00 0.00 2.10
469 484 9.877178 GAAAGACAGAAAGGATCAAAGATAGTA 57.123 33.333 0.00 0.00 0.00 1.82
470 485 8.601546 AGAAAGACAGAAAGGATCAAAGATAGT 58.398 33.333 0.00 0.00 0.00 2.12
473 488 7.392953 GGAAGAAAGACAGAAAGGATCAAAGAT 59.607 37.037 0.00 0.00 0.00 2.40
479 535 6.234177 TGAAGGAAGAAAGACAGAAAGGATC 58.766 40.000 0.00 0.00 0.00 3.36
486 542 5.593909 TGCAAAATGAAGGAAGAAAGACAGA 59.406 36.000 0.00 0.00 0.00 3.41
488 544 5.850557 TGCAAAATGAAGGAAGAAAGACA 57.149 34.783 0.00 0.00 0.00 3.41
489 545 7.719778 AAATGCAAAATGAAGGAAGAAAGAC 57.280 32.000 0.00 0.00 0.00 3.01
495 551 6.480981 ACAGTCAAAATGCAAAATGAAGGAAG 59.519 34.615 0.00 0.00 0.00 3.46
498 554 6.293027 GGAACAGTCAAAATGCAAAATGAAGG 60.293 38.462 0.00 0.00 0.00 3.46
503 559 5.916318 TGAGGAACAGTCAAAATGCAAAAT 58.084 33.333 0.00 0.00 0.00 1.82
510 566 7.120432 GCTAATTCTCTGAGGAACAGTCAAAAT 59.880 37.037 4.59 0.00 45.86 1.82
514 570 4.774726 AGCTAATTCTCTGAGGAACAGTCA 59.225 41.667 4.59 0.00 45.86 3.41
515 571 5.337578 AGCTAATTCTCTGAGGAACAGTC 57.662 43.478 4.59 0.00 45.86 3.51
516 572 5.247110 TGAAGCTAATTCTCTGAGGAACAGT 59.753 40.000 4.59 0.00 40.29 3.55
517 573 5.728471 TGAAGCTAATTCTCTGAGGAACAG 58.272 41.667 4.59 0.00 40.52 3.16
518 574 5.247110 ACTGAAGCTAATTCTCTGAGGAACA 59.753 40.000 4.59 0.00 38.83 3.18
519 575 5.729510 ACTGAAGCTAATTCTCTGAGGAAC 58.270 41.667 4.59 0.00 38.83 3.62
520 576 7.324178 GTTACTGAAGCTAATTCTCTGAGGAA 58.676 38.462 4.59 0.00 38.83 3.36
521 577 6.127310 GGTTACTGAAGCTAATTCTCTGAGGA 60.127 42.308 4.59 0.00 38.83 3.71
522 578 6.045955 GGTTACTGAAGCTAATTCTCTGAGG 58.954 44.000 4.59 0.00 38.83 3.86
523 579 6.045955 GGGTTACTGAAGCTAATTCTCTGAG 58.954 44.000 0.00 0.00 38.83 3.35
524 580 5.394224 CGGGTTACTGAAGCTAATTCTCTGA 60.394 44.000 0.00 0.00 38.83 3.27
525 581 4.806247 CGGGTTACTGAAGCTAATTCTCTG 59.194 45.833 0.00 0.00 38.83 3.35
526 582 4.466726 ACGGGTTACTGAAGCTAATTCTCT 59.533 41.667 0.00 0.00 38.83 3.10
527 583 4.756502 ACGGGTTACTGAAGCTAATTCTC 58.243 43.478 0.00 0.00 38.83 2.87
528 584 4.820894 ACGGGTTACTGAAGCTAATTCT 57.179 40.909 0.00 0.00 38.83 2.40
529 585 5.642491 AGAAACGGGTTACTGAAGCTAATTC 59.358 40.000 0.00 0.00 38.50 2.17
530 586 5.557866 AGAAACGGGTTACTGAAGCTAATT 58.442 37.500 0.00 0.00 33.40 1.40
531 587 5.161943 AGAAACGGGTTACTGAAGCTAAT 57.838 39.130 0.00 0.00 33.40 1.73
532 588 4.612264 AGAAACGGGTTACTGAAGCTAA 57.388 40.909 0.00 0.00 33.40 3.09
533 589 4.612264 AAGAAACGGGTTACTGAAGCTA 57.388 40.909 0.00 0.00 33.40 3.32
534 590 3.487120 AAGAAACGGGTTACTGAAGCT 57.513 42.857 0.00 0.00 33.40 3.74
546 602 2.875080 CGAAGCAGGTAAAGAAACGG 57.125 50.000 0.00 0.00 0.00 4.44
630 740 3.892284 TGCTTGTGAGTTTACCTTGGAA 58.108 40.909 0.00 0.00 0.00 3.53
631 741 3.569194 TGCTTGTGAGTTTACCTTGGA 57.431 42.857 0.00 0.00 0.00 3.53
632 742 3.632145 ACTTGCTTGTGAGTTTACCTTGG 59.368 43.478 0.00 0.00 0.00 3.61
633 743 4.261197 GGACTTGCTTGTGAGTTTACCTTG 60.261 45.833 0.00 0.00 0.00 3.61
636 746 3.211045 TGGACTTGCTTGTGAGTTTACC 58.789 45.455 0.00 0.00 0.00 2.85
637 747 4.083271 GGATGGACTTGCTTGTGAGTTTAC 60.083 45.833 0.00 0.00 0.00 2.01
638 748 4.072131 GGATGGACTTGCTTGTGAGTTTA 58.928 43.478 0.00 0.00 0.00 2.01
639 749 2.887152 GGATGGACTTGCTTGTGAGTTT 59.113 45.455 0.00 0.00 0.00 2.66
640 750 2.107204 AGGATGGACTTGCTTGTGAGTT 59.893 45.455 0.00 0.00 0.00 3.01
652 765 2.240667 AGCAGCATGTTTAGGATGGACT 59.759 45.455 0.00 0.00 39.31 3.85
669 782 1.268899 CCAAGAAAGAACAGGCAGCAG 59.731 52.381 0.00 0.00 0.00 4.24
670 783 1.133823 TCCAAGAAAGAACAGGCAGCA 60.134 47.619 0.00 0.00 0.00 4.41
671 784 1.609208 TCCAAGAAAGAACAGGCAGC 58.391 50.000 0.00 0.00 0.00 5.25
672 785 4.654091 TTTTCCAAGAAAGAACAGGCAG 57.346 40.909 0.00 0.00 0.00 4.85
701 825 6.992123 ACAAGCAGCATATATACTAGTGCAAA 59.008 34.615 5.39 0.00 39.94 3.68
705 829 6.929625 AGGACAAGCAGCATATATACTAGTG 58.070 40.000 5.39 0.00 0.00 2.74
707 831 8.839310 AAAAGGACAAGCAGCATATATACTAG 57.161 34.615 0.00 0.00 0.00 2.57
713 837 4.765273 TCGAAAAGGACAAGCAGCATATA 58.235 39.130 0.00 0.00 0.00 0.86
714 838 3.609853 TCGAAAAGGACAAGCAGCATAT 58.390 40.909 0.00 0.00 0.00 1.78
715 839 3.052455 TCGAAAAGGACAAGCAGCATA 57.948 42.857 0.00 0.00 0.00 3.14
716 840 1.896220 TCGAAAAGGACAAGCAGCAT 58.104 45.000 0.00 0.00 0.00 3.79
717 841 1.674359 TTCGAAAAGGACAAGCAGCA 58.326 45.000 0.00 0.00 0.00 4.41
740 864 8.196771 TCAGACAAGAACAAGCAACATATTTTT 58.803 29.630 0.00 0.00 0.00 1.94
741 865 7.715657 TCAGACAAGAACAAGCAACATATTTT 58.284 30.769 0.00 0.00 0.00 1.82
742 866 7.275888 TCAGACAAGAACAAGCAACATATTT 57.724 32.000 0.00 0.00 0.00 1.40
743 867 6.882610 TCAGACAAGAACAAGCAACATATT 57.117 33.333 0.00 0.00 0.00 1.28
744 868 6.672147 GTTCAGACAAGAACAAGCAACATAT 58.328 36.000 0.00 0.00 45.53 1.78
961 1105 5.066505 ACTGCTGATTTGAAAAAGAAGTCGT 59.933 36.000 0.00 0.00 0.00 4.34
963 1107 7.043125 GGAAACTGCTGATTTGAAAAAGAAGTC 60.043 37.037 5.41 0.00 0.00 3.01
985 1131 1.379710 CCATGGTGATGGCGGGAAA 60.380 57.895 2.57 0.00 43.00 3.13
1026 1176 0.533032 CCTCCAGGGAGTCGTTCTTC 59.467 60.000 14.00 0.00 40.44 2.87
1660 1813 4.719369 GACGAAGCTGACGCGGGT 62.719 66.667 12.47 4.12 42.32 5.28
1890 2043 2.740714 GCGGAACTTGCGGTAGCTG 61.741 63.158 4.76 0.00 45.42 4.24
2134 2287 2.432628 CCACGTCTCCTTGTCGGC 60.433 66.667 0.00 0.00 0.00 5.54
2135 2288 2.261671 CCCACGTCTCCTTGTCGG 59.738 66.667 0.00 0.00 0.00 4.79
2136 2289 2.261671 CCCCACGTCTCCTTGTCG 59.738 66.667 0.00 0.00 0.00 4.35
2193 2346 3.511540 TCACGATGTCCTTGAAGATGACT 59.488 43.478 0.00 0.00 0.00 3.41
2352 2505 1.671379 GGTGGTGCGGAACTTCTCC 60.671 63.158 0.00 0.00 41.40 3.71
2661 2814 1.433053 CGAGTGCGGTTTGGTTGACA 61.433 55.000 0.00 0.00 0.00 3.58
2691 2844 2.576191 CACCTTGGGGATGGTCTTTCTA 59.424 50.000 0.00 0.00 33.75 2.10
2999 3218 1.107945 CGAGGAGAAAGAGGGAGGTC 58.892 60.000 0.00 0.00 0.00 3.85
3029 3248 8.939929 TGTTCAGTGAAATCATTGTAGAAGATC 58.060 33.333 7.25 0.00 35.43 2.75
3127 3349 2.161486 GCGAGCTGAGTAACCGCTG 61.161 63.158 6.47 0.00 42.24 5.18
3128 3350 2.182030 GCGAGCTGAGTAACCGCT 59.818 61.111 6.47 0.00 42.24 5.52
3138 3360 2.734673 GGCGTTCTTCAGCGAGCTG 61.735 63.158 18.20 18.20 44.86 4.24
3180 3402 2.097142 GCTGTCCATGTTGAAGCTGATC 59.903 50.000 0.00 0.00 0.00 2.92
3213 3435 3.231736 ACCGTGTTGAGGGTCGCT 61.232 61.111 0.00 0.00 35.29 4.93
3219 3441 2.604174 GGCGTTCACCGTGTTGAGG 61.604 63.158 0.00 0.00 39.32 3.86
3603 3825 2.591715 AACTCGCGCCAGTGCTTT 60.592 55.556 8.88 0.00 34.43 3.51
3636 3858 4.373116 TCCTCCGTGAAGCGTGCC 62.373 66.667 0.00 0.00 39.32 5.01
3639 3861 4.719369 GCGTCCTCCGTGAAGCGT 62.719 66.667 0.00 0.00 39.32 5.07
3648 3870 1.737008 GTTCGTCTTGGCGTCCTCC 60.737 63.158 0.00 0.00 0.00 4.30
3663 3885 2.124695 GGGATCTGCACCGGGTTC 60.125 66.667 6.32 0.00 0.00 3.62
3669 3891 2.359169 TGACCTCGGGATCTGCACC 61.359 63.158 0.00 0.00 0.00 5.01
3711 3933 9.263401 ATCATGTCGATGAGGAACTTCTTCCAT 62.263 40.741 2.41 0.00 41.71 3.41
3852 4074 1.289066 CTCGAAGTCGCCCTTGTCA 59.711 57.895 0.00 0.00 39.60 3.58
3939 4161 1.376037 GAAGAGGTTCAGCACGGGG 60.376 63.158 0.00 0.00 32.36 5.73
3948 4170 0.955919 CGGGCTGGTTGAAGAGGTTC 60.956 60.000 0.00 0.00 0.00 3.62
4027 4249 2.045926 GACTTGCTGGGTGGCGAT 60.046 61.111 0.00 0.00 34.52 4.58
4040 4262 2.952245 CGTGGTCGACGGAGACTT 59.048 61.111 9.92 0.00 44.85 3.01
4102 4328 0.931468 TGGGATCGTAGGAGGGAAGA 59.069 55.000 0.00 0.00 0.00 2.87
4113 4339 2.574006 ATGCTATGCAATGGGATCGT 57.426 45.000 0.00 0.00 43.62 3.73
4151 4377 3.749609 TCTAATGAGGATGCATGCGAATG 59.250 43.478 14.09 0.00 0.00 2.67
4170 4396 6.601332 ACAGGAAACAAATTTGGAGAGTCTA 58.399 36.000 21.74 0.00 0.00 2.59
4192 4418 4.308265 TCGATACAAACATTCGACCAACA 58.692 39.130 0.00 0.00 37.01 3.33
4223 4449 8.736742 CATTACATCGTAAAGTGCATTGAATTC 58.263 33.333 0.00 0.00 0.00 2.17
4230 4456 7.984391 TGAAATCATTACATCGTAAAGTGCAT 58.016 30.769 0.00 0.00 0.00 3.96
4232 4458 7.426456 CACTGAAATCATTACATCGTAAAGTGC 59.574 37.037 0.00 0.00 0.00 4.40
4234 4460 7.334421 AGCACTGAAATCATTACATCGTAAAGT 59.666 33.333 0.00 0.00 0.00 2.66
4254 6213 5.180868 GCTGGAATGGATTTATCTAGCACTG 59.819 44.000 5.62 0.00 44.29 3.66
4266 6225 0.254178 AGCTGTCGCTGGAATGGATT 59.746 50.000 0.00 0.00 46.86 3.01
4267 6226 1.910722 AGCTGTCGCTGGAATGGAT 59.089 52.632 0.00 0.00 46.86 3.41
4340 6299 7.659390 GCTGCACCTTTAGTTTATAGATCATCT 59.341 37.037 0.00 0.00 0.00 2.90
4401 6360 7.066284 ACAATATCTTCCACTAATGCACTCAAC 59.934 37.037 0.00 0.00 0.00 3.18
4439 6398 1.265454 AAAGGAGGGCGGATTCGACT 61.265 55.000 0.00 0.00 45.36 4.18
4484 6443 7.819900 GTCAATCAGGTAGTGTGAAGTAAATCT 59.180 37.037 0.00 0.00 0.00 2.40
4487 6446 5.924254 CGTCAATCAGGTAGTGTGAAGTAAA 59.076 40.000 0.00 0.00 0.00 2.01
4488 6447 5.010314 ACGTCAATCAGGTAGTGTGAAGTAA 59.990 40.000 0.00 0.00 0.00 2.24
4551 6510 0.451783 CAACAGCTTATTGTCGGGGC 59.548 55.000 0.00 0.00 0.00 5.80
4555 6514 0.796312 ACGCCAACAGCTTATTGTCG 59.204 50.000 8.85 8.85 40.39 4.35
4566 6525 3.042871 ACGGTAATTTCTACGCCAACA 57.957 42.857 0.00 0.00 0.00 3.33
4584 6543 5.547341 CAACATGACACTACCGAAATAACG 58.453 41.667 0.00 0.00 0.00 3.18
4591 6562 2.416836 GCTAGCAACATGACACTACCGA 60.417 50.000 10.63 0.00 0.00 4.69
4621 6592 7.105588 TCATGGATATAGCAGCGAATGTATTT 58.894 34.615 0.00 0.00 0.00 1.40
4632 6603 7.068470 TGCTCTAAGATCTCATGGATATAGCAG 59.932 40.741 0.00 8.89 34.33 4.24
4665 6636 2.622942 TGTTGGATTTGACAAGTCCAGC 59.377 45.455 28.50 28.50 42.54 4.85
4699 6670 2.290450 TGGATTTGGGGTTTCTACGGTC 60.290 50.000 0.00 0.00 0.00 4.79
4700 6671 1.706305 TGGATTTGGGGTTTCTACGGT 59.294 47.619 0.00 0.00 0.00 4.83
4701 6672 2.500392 TGGATTTGGGGTTTCTACGG 57.500 50.000 0.00 0.00 0.00 4.02
4702 6673 7.996098 ATAATATGGATTTGGGGTTTCTACG 57.004 36.000 0.00 0.00 0.00 3.51
4733 6704 0.174162 GGCGTCCGAAAGCTAGGTTA 59.826 55.000 7.76 0.00 0.00 2.85
4749 6720 2.125713 TGTGCGGTACATCTGGCG 60.126 61.111 0.00 0.00 33.42 5.69
4771 8329 2.031163 GTCGTTGCTGCCTCACCT 59.969 61.111 0.00 0.00 0.00 4.00
4787 8345 1.113517 ATATCCGGCGCTAGGTGTGT 61.114 55.000 18.94 7.77 0.00 3.72
4818 8376 2.759560 AATCCATTGTGCCCGCCC 60.760 61.111 0.00 0.00 0.00 6.13
4821 8379 3.525221 GGGAATCCATTGTGCCCG 58.475 61.111 0.09 0.00 0.00 6.13
4824 8382 0.734889 CTGTCGGGAATCCATTGTGC 59.265 55.000 0.09 0.00 0.00 4.57
4826 8384 2.356125 CCTTCTGTCGGGAATCCATTGT 60.356 50.000 0.09 0.00 0.00 2.71
4829 8387 1.765314 CTCCTTCTGTCGGGAATCCAT 59.235 52.381 0.09 0.00 0.00 3.41
4838 8396 0.169230 CACTCGGACTCCTTCTGTCG 59.831 60.000 0.00 0.00 35.45 4.35
4856 8414 4.631247 AGCTTGTGCGAGGCAGCA 62.631 61.111 3.54 3.54 45.96 4.41
4904 8462 2.279784 CGAGAAGGAGATGGCCGC 60.280 66.667 0.00 0.00 0.00 6.53
4921 8479 4.301027 CTCATCCTACGCGGCCCC 62.301 72.222 12.47 0.00 0.00 5.80
4931 8489 1.777941 GTCGACCCCTAACTCATCCT 58.222 55.000 3.51 0.00 0.00 3.24
4934 8492 0.033796 TCCGTCGACCCCTAACTCAT 60.034 55.000 10.58 0.00 0.00 2.90
4969 8527 0.109532 TGGTGGACAGCGGATTTGAA 59.890 50.000 0.00 0.00 0.00 2.69
4981 8539 1.153823 CGTCTCCGACATGGTGGAC 60.154 63.158 4.21 1.37 39.52 4.02
4985 8543 3.771160 GGCCGTCTCCGACATGGT 61.771 66.667 0.00 0.00 39.52 3.55
4991 8549 4.361971 ACCTCTGGCCGTCTCCGA 62.362 66.667 0.00 0.00 35.63 4.55
4992 8550 4.135153 CACCTCTGGCCGTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
4993 8551 2.680352 TCACCTCTGGCCGTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
4994 8552 2.888863 CTCACCTCTGGCCGTCTC 59.111 66.667 0.00 0.00 0.00 3.36
4995 8553 3.386237 GCTCACCTCTGGCCGTCT 61.386 66.667 0.00 0.00 0.00 4.18
4996 8554 2.948720 AAGCTCACCTCTGGCCGTC 61.949 63.158 0.00 0.00 0.00 4.79
4997 8555 2.925170 AAGCTCACCTCTGGCCGT 60.925 61.111 0.00 0.00 0.00 5.68
4998 8556 2.435586 CAAGCTCACCTCTGGCCG 60.436 66.667 0.00 0.00 0.00 6.13
4999 8557 2.045536 CCAAGCTCACCTCTGGCC 60.046 66.667 0.00 0.00 0.00 5.36
5000 8558 2.045536 CCCAAGCTCACCTCTGGC 60.046 66.667 0.00 0.00 0.00 4.85
5001 8559 1.002868 CACCCAAGCTCACCTCTGG 60.003 63.158 0.00 0.00 0.00 3.86
5002 8560 1.002868 CCACCCAAGCTCACCTCTG 60.003 63.158 0.00 0.00 0.00 3.35
5003 8561 2.900106 GCCACCCAAGCTCACCTCT 61.900 63.158 0.00 0.00 0.00 3.69
5004 8562 2.360475 GCCACCCAAGCTCACCTC 60.360 66.667 0.00 0.00 0.00 3.85
5005 8563 3.177884 TGCCACCCAAGCTCACCT 61.178 61.111 0.00 0.00 0.00 4.00
5006 8564 2.674380 CTGCCACCCAAGCTCACC 60.674 66.667 0.00 0.00 0.00 4.02
5007 8565 1.673665 CTCTGCCACCCAAGCTCAC 60.674 63.158 0.00 0.00 0.00 3.51
5008 8566 2.752358 CTCTGCCACCCAAGCTCA 59.248 61.111 0.00 0.00 0.00 4.26
5009 8567 2.045536 CCTCTGCCACCCAAGCTC 60.046 66.667 0.00 0.00 0.00 4.09
5010 8568 2.530151 TCCTCTGCCACCCAAGCT 60.530 61.111 0.00 0.00 0.00 3.74
5011 8569 2.045536 CTCCTCTGCCACCCAAGC 60.046 66.667 0.00 0.00 0.00 4.01
5012 8570 1.197430 ACTCTCCTCTGCCACCCAAG 61.197 60.000 0.00 0.00 0.00 3.61
5013 8571 1.152030 ACTCTCCTCTGCCACCCAA 60.152 57.895 0.00 0.00 0.00 4.12
5014 8572 1.915266 CACTCTCCTCTGCCACCCA 60.915 63.158 0.00 0.00 0.00 4.51
5015 8573 2.664081 CCACTCTCCTCTGCCACCC 61.664 68.421 0.00 0.00 0.00 4.61
5016 8574 1.610673 TCCACTCTCCTCTGCCACC 60.611 63.158 0.00 0.00 0.00 4.61
5017 8575 0.902516 ACTCCACTCTCCTCTGCCAC 60.903 60.000 0.00 0.00 0.00 5.01
5018 8576 0.704664 TACTCCACTCTCCTCTGCCA 59.295 55.000 0.00 0.00 0.00 4.92
5019 8577 1.853963 TTACTCCACTCTCCTCTGCC 58.146 55.000 0.00 0.00 0.00 4.85
5020 8578 2.829120 ACTTTACTCCACTCTCCTCTGC 59.171 50.000 0.00 0.00 0.00 4.26
5021 8579 3.194542 CCACTTTACTCCACTCTCCTCTG 59.805 52.174 0.00 0.00 0.00 3.35
5022 8580 3.436243 CCACTTTACTCCACTCTCCTCT 58.564 50.000 0.00 0.00 0.00 3.69
5023 8581 2.093921 GCCACTTTACTCCACTCTCCTC 60.094 54.545 0.00 0.00 0.00 3.71
5024 8582 1.903183 GCCACTTTACTCCACTCTCCT 59.097 52.381 0.00 0.00 0.00 3.69
5025 8583 1.903183 AGCCACTTTACTCCACTCTCC 59.097 52.381 0.00 0.00 0.00 3.71
5026 8584 3.131400 CCTAGCCACTTTACTCCACTCTC 59.869 52.174 0.00 0.00 0.00 3.20
5027 8585 3.100671 CCTAGCCACTTTACTCCACTCT 58.899 50.000 0.00 0.00 0.00 3.24
5028 8586 2.168728 CCCTAGCCACTTTACTCCACTC 59.831 54.545 0.00 0.00 0.00 3.51
5029 8587 2.188817 CCCTAGCCACTTTACTCCACT 58.811 52.381 0.00 0.00 0.00 4.00
5030 8588 1.907255 ACCCTAGCCACTTTACTCCAC 59.093 52.381 0.00 0.00 0.00 4.02
5031 8589 2.337359 ACCCTAGCCACTTTACTCCA 57.663 50.000 0.00 0.00 0.00 3.86
5032 8590 3.344515 CAAACCCTAGCCACTTTACTCC 58.655 50.000 0.00 0.00 0.00 3.85
5033 8591 3.244805 ACCAAACCCTAGCCACTTTACTC 60.245 47.826 0.00 0.00 0.00 2.59
5034 8592 2.714793 ACCAAACCCTAGCCACTTTACT 59.285 45.455 0.00 0.00 0.00 2.24
5035 8593 3.150458 ACCAAACCCTAGCCACTTTAC 57.850 47.619 0.00 0.00 0.00 2.01
5036 8594 3.758425 GAACCAAACCCTAGCCACTTTA 58.242 45.455 0.00 0.00 0.00 1.85
5037 8595 2.594131 GAACCAAACCCTAGCCACTTT 58.406 47.619 0.00 0.00 0.00 2.66
5038 8596 1.544759 CGAACCAAACCCTAGCCACTT 60.545 52.381 0.00 0.00 0.00 3.16
5039 8597 0.036306 CGAACCAAACCCTAGCCACT 59.964 55.000 0.00 0.00 0.00 4.00
5040 8598 0.958876 CCGAACCAAACCCTAGCCAC 60.959 60.000 0.00 0.00 0.00 5.01
5041 8599 1.377229 CCGAACCAAACCCTAGCCA 59.623 57.895 0.00 0.00 0.00 4.75
5042 8600 2.044555 GCCGAACCAAACCCTAGCC 61.045 63.158 0.00 0.00 0.00 3.93
5043 8601 2.396157 CGCCGAACCAAACCCTAGC 61.396 63.158 0.00 0.00 0.00 3.42
5044 8602 0.739813 CTCGCCGAACCAAACCCTAG 60.740 60.000 0.00 0.00 0.00 3.02
5045 8603 1.294138 CTCGCCGAACCAAACCCTA 59.706 57.895 0.00 0.00 0.00 3.53
5046 8604 2.032071 CTCGCCGAACCAAACCCT 59.968 61.111 0.00 0.00 0.00 4.34
5047 8605 3.733960 GCTCGCCGAACCAAACCC 61.734 66.667 0.00 0.00 0.00 4.11
5048 8606 4.084888 CGCTCGCCGAACCAAACC 62.085 66.667 0.00 0.00 40.02 3.27
5049 8607 4.084888 CCGCTCGCCGAACCAAAC 62.085 66.667 0.00 0.00 40.02 2.93
5050 8608 4.302509 TCCGCTCGCCGAACCAAA 62.303 61.111 0.00 0.00 40.02 3.28
5060 8618 1.164662 TATTCCTCCTCGTCCGCTCG 61.165 60.000 0.00 0.00 0.00 5.03
5061 8619 1.249407 ATATTCCTCCTCGTCCGCTC 58.751 55.000 0.00 0.00 0.00 5.03
5062 8620 2.581216 TATATTCCTCCTCGTCCGCT 57.419 50.000 0.00 0.00 0.00 5.52
5063 8621 4.261656 CCATATATATTCCTCCTCGTCCGC 60.262 50.000 0.00 0.00 0.00 5.54
5064 8622 4.278669 CCCATATATATTCCTCCTCGTCCG 59.721 50.000 0.00 0.00 0.00 4.79
5065 8623 4.589374 CCCCATATATATTCCTCCTCGTCC 59.411 50.000 0.00 0.00 0.00 4.79
5066 8624 5.209659 ACCCCATATATATTCCTCCTCGTC 58.790 45.833 0.00 0.00 0.00 4.20
5067 8625 5.209659 GACCCCATATATATTCCTCCTCGT 58.790 45.833 0.00 0.00 0.00 4.18
5068 8626 4.278669 CGACCCCATATATATTCCTCCTCG 59.721 50.000 0.00 0.00 0.00 4.63
5069 8627 4.589374 CCGACCCCATATATATTCCTCCTC 59.411 50.000 0.00 0.00 0.00 3.71
5070 8628 4.557705 CCGACCCCATATATATTCCTCCT 58.442 47.826 0.00 0.00 0.00 3.69
5071 8629 4.957684 CCGACCCCATATATATTCCTCC 57.042 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.