Multiple sequence alignment - TraesCS6A01G374800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G374800 chr6A 100.000 2321 0 0 1 2321 597361227 597363547 0.000000e+00 4287.0
1 TraesCS6A01G374800 chr6A 96.226 848 31 1 1322 2168 597423361 597424208 0.000000e+00 1387.0
2 TraesCS6A01G374800 chr6A 95.679 162 6 1 2160 2321 142276194 142276034 2.290000e-65 259.0
3 TraesCS6A01G374800 chr6A 95.625 160 7 0 2162 2321 106939339 106939498 8.230000e-65 257.0
4 TraesCS6A01G374800 chr1B 96.018 879 35 0 438 1316 253005351 253006229 0.000000e+00 1430.0
5 TraesCS6A01G374800 chr4D 95.362 884 40 1 433 1316 291940323 291941205 0.000000e+00 1404.0
6 TraesCS6A01G374800 chr4D 95.211 877 42 0 437 1313 395951940 395952816 0.000000e+00 1387.0
7 TraesCS6A01G374800 chr4D 94.269 855 42 7 1317 2168 328409638 328408788 0.000000e+00 1301.0
8 TraesCS6A01G374800 chr3A 95.558 878 33 3 439 1316 325287385 325288256 0.000000e+00 1400.0
9 TraesCS6A01G374800 chr3A 97.386 153 4 0 2169 2321 600696976 600696824 6.360000e-66 261.0
10 TraesCS6A01G374800 chr3A 81.281 203 25 9 99 294 724307498 724307694 3.990000e-33 152.0
11 TraesCS6A01G374800 chr3A 95.455 44 2 0 5 48 107270207 107270250 1.150000e-08 71.3
12 TraesCS6A01G374800 chr5D 95.336 879 41 0 438 1316 443317060 443317938 0.000000e+00 1397.0
13 TraesCS6A01G374800 chr5D 94.509 856 39 8 1317 2168 45709039 45708188 0.000000e+00 1314.0
14 TraesCS6A01G374800 chr5D 94.269 855 42 5 1317 2168 112739821 112740671 0.000000e+00 1301.0
15 TraesCS6A01G374800 chr3D 95.336 879 40 1 438 1316 29959888 29959011 0.000000e+00 1395.0
16 TraesCS6A01G374800 chr3D 94.808 886 46 0 431 1316 127341909 127341024 0.000000e+00 1382.0
17 TraesCS6A01G374800 chr3D 95.455 44 2 0 1 44 416182313 416182356 1.150000e-08 71.3
18 TraesCS6A01G374800 chrUn 95.216 878 42 0 439 1316 91222091 91221214 0.000000e+00 1389.0
19 TraesCS6A01G374800 chr7B 95.125 882 41 2 436 1316 58456246 58455366 0.000000e+00 1389.0
20 TraesCS6A01G374800 chr7B 97.727 44 1 0 1 44 683603657 683603700 2.470000e-10 76.8
21 TraesCS6A01G374800 chr1D 95.205 855 38 3 1317 2168 485175284 485176138 0.000000e+00 1349.0
22 TraesCS6A01G374800 chr1D 94.620 855 42 4 1317 2168 485194298 485195151 0.000000e+00 1321.0
23 TraesCS6A01G374800 chr1D 94.296 859 44 5 1315 2168 293898292 293897434 0.000000e+00 1310.0
24 TraesCS6A01G374800 chr2D 94.737 855 39 6 1317 2168 143275142 143274291 0.000000e+00 1325.0
25 TraesCS6A01G374800 chr7D 94.406 858 42 6 1316 2168 446531185 446530329 0.000000e+00 1314.0
26 TraesCS6A01G374800 chr7A 97.386 153 4 0 2169 2321 94369622 94369774 6.360000e-66 261.0
27 TraesCS6A01G374800 chr7A 95.455 44 2 0 1 44 670712441 670712484 1.150000e-08 71.3
28 TraesCS6A01G374800 chr5A 97.386 153 4 0 2169 2321 36531494 36531342 6.360000e-66 261.0
29 TraesCS6A01G374800 chr5A 97.386 153 4 0 2169 2321 40848427 40848275 6.360000e-66 261.0
30 TraesCS6A01G374800 chr5A 95.455 44 2 0 1 44 368569458 368569501 1.150000e-08 71.3
31 TraesCS6A01G374800 chr4A 97.386 153 4 0 2169 2321 351964682 351964834 6.360000e-66 261.0
32 TraesCS6A01G374800 chr1A 97.386 153 4 0 2169 2321 500397873 500398025 6.360000e-66 261.0
33 TraesCS6A01G374800 chr1A 95.652 161 7 0 2161 2321 408273883 408274043 2.290000e-65 259.0
34 TraesCS6A01G374800 chr1A 97.674 43 1 0 5 47 299499360 299499318 8.890000e-10 75.0
35 TraesCS6A01G374800 chr1A 93.617 47 3 0 1 47 51189370 51189416 1.150000e-08 71.3
36 TraesCS6A01G374800 chr6B 93.750 48 3 0 1 48 498216848 498216801 3.200000e-09 73.1
37 TraesCS6A01G374800 chr6D 93.182 44 3 0 1 44 195293016 195293059 5.350000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G374800 chr6A 597361227 597363547 2320 False 4287 4287 100.000 1 2321 1 chr6A.!!$F2 2320
1 TraesCS6A01G374800 chr6A 597423361 597424208 847 False 1387 1387 96.226 1322 2168 1 chr6A.!!$F3 846
2 TraesCS6A01G374800 chr1B 253005351 253006229 878 False 1430 1430 96.018 438 1316 1 chr1B.!!$F1 878
3 TraesCS6A01G374800 chr4D 291940323 291941205 882 False 1404 1404 95.362 433 1316 1 chr4D.!!$F1 883
4 TraesCS6A01G374800 chr4D 395951940 395952816 876 False 1387 1387 95.211 437 1313 1 chr4D.!!$F2 876
5 TraesCS6A01G374800 chr4D 328408788 328409638 850 True 1301 1301 94.269 1317 2168 1 chr4D.!!$R1 851
6 TraesCS6A01G374800 chr3A 325287385 325288256 871 False 1400 1400 95.558 439 1316 1 chr3A.!!$F2 877
7 TraesCS6A01G374800 chr5D 443317060 443317938 878 False 1397 1397 95.336 438 1316 1 chr5D.!!$F2 878
8 TraesCS6A01G374800 chr5D 45708188 45709039 851 True 1314 1314 94.509 1317 2168 1 chr5D.!!$R1 851
9 TraesCS6A01G374800 chr5D 112739821 112740671 850 False 1301 1301 94.269 1317 2168 1 chr5D.!!$F1 851
10 TraesCS6A01G374800 chr3D 29959011 29959888 877 True 1395 1395 95.336 438 1316 1 chr3D.!!$R1 878
11 TraesCS6A01G374800 chr3D 127341024 127341909 885 True 1382 1382 94.808 431 1316 1 chr3D.!!$R2 885
12 TraesCS6A01G374800 chrUn 91221214 91222091 877 True 1389 1389 95.216 439 1316 1 chrUn.!!$R1 877
13 TraesCS6A01G374800 chr7B 58455366 58456246 880 True 1389 1389 95.125 436 1316 1 chr7B.!!$R1 880
14 TraesCS6A01G374800 chr1D 485175284 485176138 854 False 1349 1349 95.205 1317 2168 1 chr1D.!!$F1 851
15 TraesCS6A01G374800 chr1D 485194298 485195151 853 False 1321 1321 94.620 1317 2168 1 chr1D.!!$F2 851
16 TraesCS6A01G374800 chr1D 293897434 293898292 858 True 1310 1310 94.296 1315 2168 1 chr1D.!!$R1 853
17 TraesCS6A01G374800 chr2D 143274291 143275142 851 True 1325 1325 94.737 1317 2168 1 chr2D.!!$R1 851
18 TraesCS6A01G374800 chr7D 446530329 446531185 856 True 1314 1314 94.406 1316 2168 1 chr7D.!!$R1 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.035458 GGAGGTTCTCTGGTGTGGTG 59.965 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2005 1.783071 GGGAGTCGAGAAAGGATCCT 58.217 55.0 9.02 9.02 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.674925 ACGAGGTATTCATATAATTTAGGGGA 57.325 34.615 0.00 0.00 0.00 4.81
72 73 8.759782 ACGAGGTATTCATATAATTTAGGGGAG 58.240 37.037 0.00 0.00 0.00 4.30
73 74 8.204836 CGAGGTATTCATATAATTTAGGGGAGG 58.795 40.741 0.00 0.00 0.00 4.30
74 75 9.059023 GAGGTATTCATATAATTTAGGGGAGGT 57.941 37.037 0.00 0.00 0.00 3.85
75 76 9.419667 AGGTATTCATATAATTTAGGGGAGGTT 57.580 33.333 0.00 0.00 0.00 3.50
76 77 9.682465 GGTATTCATATAATTTAGGGGAGGTTC 57.318 37.037 0.00 0.00 0.00 3.62
79 80 8.814448 TTCATATAATTTAGGGGAGGTTCTCT 57.186 34.615 0.00 0.00 0.00 3.10
80 81 8.207350 TCATATAATTTAGGGGAGGTTCTCTG 57.793 38.462 0.00 0.00 0.00 3.35
81 82 5.913946 ATAATTTAGGGGAGGTTCTCTGG 57.086 43.478 0.00 0.00 0.00 3.86
82 83 2.735259 TTTAGGGGAGGTTCTCTGGT 57.265 50.000 0.00 0.00 0.00 4.00
83 84 1.952621 TTAGGGGAGGTTCTCTGGTG 58.047 55.000 0.00 0.00 0.00 4.17
84 85 0.790993 TAGGGGAGGTTCTCTGGTGT 59.209 55.000 0.00 0.00 0.00 4.16
85 86 0.838122 AGGGGAGGTTCTCTGGTGTG 60.838 60.000 0.00 0.00 0.00 3.82
86 87 1.679898 GGGAGGTTCTCTGGTGTGG 59.320 63.158 0.00 0.00 0.00 4.17
87 88 1.128188 GGGAGGTTCTCTGGTGTGGT 61.128 60.000 0.00 0.00 0.00 4.16
88 89 0.035458 GGAGGTTCTCTGGTGTGGTG 59.965 60.000 0.00 0.00 0.00 4.17
89 90 0.759346 GAGGTTCTCTGGTGTGGTGT 59.241 55.000 0.00 0.00 0.00 4.16
90 91 1.141053 GAGGTTCTCTGGTGTGGTGTT 59.859 52.381 0.00 0.00 0.00 3.32
91 92 1.564348 AGGTTCTCTGGTGTGGTGTTT 59.436 47.619 0.00 0.00 0.00 2.83
92 93 2.025321 AGGTTCTCTGGTGTGGTGTTTT 60.025 45.455 0.00 0.00 0.00 2.43
93 94 2.758423 GGTTCTCTGGTGTGGTGTTTTT 59.242 45.455 0.00 0.00 0.00 1.94
94 95 3.428862 GGTTCTCTGGTGTGGTGTTTTTG 60.429 47.826 0.00 0.00 0.00 2.44
95 96 1.748493 TCTCTGGTGTGGTGTTTTTGC 59.252 47.619 0.00 0.00 0.00 3.68
96 97 1.476085 CTCTGGTGTGGTGTTTTTGCA 59.524 47.619 0.00 0.00 0.00 4.08
97 98 1.895798 TCTGGTGTGGTGTTTTTGCAA 59.104 42.857 0.00 0.00 0.00 4.08
98 99 2.094286 TCTGGTGTGGTGTTTTTGCAAG 60.094 45.455 0.00 0.00 0.00 4.01
99 100 1.620819 TGGTGTGGTGTTTTTGCAAGT 59.379 42.857 0.00 0.00 0.00 3.16
100 101 2.267426 GGTGTGGTGTTTTTGCAAGTC 58.733 47.619 0.00 0.00 0.00 3.01
101 102 2.267426 GTGTGGTGTTTTTGCAAGTCC 58.733 47.619 0.00 0.21 0.00 3.85
102 103 2.094234 GTGTGGTGTTTTTGCAAGTCCT 60.094 45.455 0.00 0.00 0.00 3.85
103 104 2.165437 TGTGGTGTTTTTGCAAGTCCTC 59.835 45.455 0.00 1.68 0.00 3.71
104 105 2.427095 GTGGTGTTTTTGCAAGTCCTCT 59.573 45.455 0.00 0.00 0.00 3.69
105 106 3.630312 GTGGTGTTTTTGCAAGTCCTCTA 59.370 43.478 0.00 0.00 0.00 2.43
106 107 4.278419 GTGGTGTTTTTGCAAGTCCTCTAT 59.722 41.667 0.00 0.00 0.00 1.98
107 108 5.472137 GTGGTGTTTTTGCAAGTCCTCTATA 59.528 40.000 0.00 0.00 0.00 1.31
108 109 5.472137 TGGTGTTTTTGCAAGTCCTCTATAC 59.528 40.000 0.00 0.00 0.00 1.47
109 110 5.472137 GGTGTTTTTGCAAGTCCTCTATACA 59.528 40.000 0.00 0.00 0.00 2.29
110 111 6.151144 GGTGTTTTTGCAAGTCCTCTATACAT 59.849 38.462 0.00 0.00 0.00 2.29
111 112 7.244192 GTGTTTTTGCAAGTCCTCTATACATC 58.756 38.462 0.00 0.00 0.00 3.06
112 113 7.119846 GTGTTTTTGCAAGTCCTCTATACATCT 59.880 37.037 0.00 0.00 0.00 2.90
113 114 7.665559 TGTTTTTGCAAGTCCTCTATACATCTT 59.334 33.333 0.00 0.00 0.00 2.40
114 115 7.849804 TTTTGCAAGTCCTCTATACATCTTC 57.150 36.000 0.00 0.00 0.00 2.87
115 116 5.537300 TGCAAGTCCTCTATACATCTTCC 57.463 43.478 0.00 0.00 0.00 3.46
116 117 4.345257 TGCAAGTCCTCTATACATCTTCCC 59.655 45.833 0.00 0.00 0.00 3.97
117 118 4.262678 GCAAGTCCTCTATACATCTTCCCC 60.263 50.000 0.00 0.00 0.00 4.81
118 119 5.151454 CAAGTCCTCTATACATCTTCCCCT 58.849 45.833 0.00 0.00 0.00 4.79
119 120 4.746466 AGTCCTCTATACATCTTCCCCTG 58.254 47.826 0.00 0.00 0.00 4.45
120 121 4.420552 AGTCCTCTATACATCTTCCCCTGA 59.579 45.833 0.00 0.00 0.00 3.86
121 122 5.103043 AGTCCTCTATACATCTTCCCCTGAA 60.103 44.000 0.00 0.00 0.00 3.02
122 123 5.602978 GTCCTCTATACATCTTCCCCTGAAA 59.397 44.000 0.00 0.00 0.00 2.69
123 124 5.602978 TCCTCTATACATCTTCCCCTGAAAC 59.397 44.000 0.00 0.00 0.00 2.78
124 125 5.366768 CCTCTATACATCTTCCCCTGAAACA 59.633 44.000 0.00 0.00 0.00 2.83
125 126 6.043706 CCTCTATACATCTTCCCCTGAAACAT 59.956 42.308 0.00 0.00 0.00 2.71
126 127 6.830912 TCTATACATCTTCCCCTGAAACATG 58.169 40.000 0.00 0.00 31.49 3.21
127 128 3.814504 ACATCTTCCCCTGAAACATGT 57.185 42.857 0.00 0.00 32.79 3.21
128 129 4.118168 ACATCTTCCCCTGAAACATGTT 57.882 40.909 4.92 4.92 33.38 2.71
129 130 4.482990 ACATCTTCCCCTGAAACATGTTT 58.517 39.130 23.49 23.49 33.38 2.83
130 131 4.901250 ACATCTTCCCCTGAAACATGTTTT 59.099 37.500 24.02 8.91 33.38 2.43
131 132 5.011023 ACATCTTCCCCTGAAACATGTTTTC 59.989 40.000 24.02 16.80 33.38 2.29
132 133 4.803452 TCTTCCCCTGAAACATGTTTTCT 58.197 39.130 24.02 2.85 32.11 2.52
133 134 5.208121 TCTTCCCCTGAAACATGTTTTCTT 58.792 37.500 24.02 2.44 32.11 2.52
134 135 5.301805 TCTTCCCCTGAAACATGTTTTCTTC 59.698 40.000 24.02 12.53 32.11 2.87
135 136 4.803452 TCCCCTGAAACATGTTTTCTTCT 58.197 39.130 24.02 1.23 32.11 2.85
136 137 5.208121 TCCCCTGAAACATGTTTTCTTCTT 58.792 37.500 24.02 0.43 32.11 2.52
137 138 5.660864 TCCCCTGAAACATGTTTTCTTCTTT 59.339 36.000 24.02 0.00 32.11 2.52
138 139 6.836527 TCCCCTGAAACATGTTTTCTTCTTTA 59.163 34.615 24.02 4.98 32.11 1.85
139 140 7.508977 TCCCCTGAAACATGTTTTCTTCTTTAT 59.491 33.333 24.02 0.00 32.11 1.40
140 141 8.150296 CCCCTGAAACATGTTTTCTTCTTTATT 58.850 33.333 24.02 0.00 32.11 1.40
141 142 9.546428 CCCTGAAACATGTTTTCTTCTTTATTT 57.454 29.630 24.02 0.00 32.11 1.40
165 166 7.827819 TCTCTTCAAACTAACATACGAATGG 57.172 36.000 0.00 0.00 37.43 3.16
166 167 6.312918 TCTCTTCAAACTAACATACGAATGGC 59.687 38.462 0.00 0.00 37.43 4.40
167 168 5.935206 TCTTCAAACTAACATACGAATGGCA 59.065 36.000 0.00 0.00 37.43 4.92
168 169 6.597672 TCTTCAAACTAACATACGAATGGCAT 59.402 34.615 0.00 0.00 37.43 4.40
169 170 7.766738 TCTTCAAACTAACATACGAATGGCATA 59.233 33.333 0.00 0.00 37.43 3.14
170 171 8.445275 TTCAAACTAACATACGAATGGCATAT 57.555 30.769 0.00 0.00 37.43 1.78
171 172 7.860613 TCAAACTAACATACGAATGGCATATG 58.139 34.615 0.00 3.20 37.43 1.78
172 173 5.862924 ACTAACATACGAATGGCATATGC 57.137 39.130 19.79 19.79 37.43 3.14
173 174 5.304778 ACTAACATACGAATGGCATATGCA 58.695 37.500 28.07 15.05 44.36 3.96
174 175 5.939883 ACTAACATACGAATGGCATATGCAT 59.060 36.000 28.07 16.54 44.36 3.96
175 176 4.690184 ACATACGAATGGCATATGCATG 57.310 40.909 28.07 21.36 44.36 4.06
176 177 4.325972 ACATACGAATGGCATATGCATGA 58.674 39.130 28.07 12.37 44.36 3.07
177 178 4.154737 ACATACGAATGGCATATGCATGAC 59.845 41.667 28.07 15.12 44.36 3.06
178 179 2.854963 ACGAATGGCATATGCATGACT 58.145 42.857 28.07 8.23 41.23 3.41
179 180 4.006780 ACGAATGGCATATGCATGACTA 57.993 40.909 28.07 8.03 41.23 2.59
180 181 4.582869 ACGAATGGCATATGCATGACTAT 58.417 39.130 28.07 9.84 41.23 2.12
181 182 5.005740 ACGAATGGCATATGCATGACTATT 58.994 37.500 28.07 16.55 41.23 1.73
182 183 5.122869 ACGAATGGCATATGCATGACTATTC 59.877 40.000 28.07 21.40 41.23 1.75
183 184 5.353400 CGAATGGCATATGCATGACTATTCT 59.647 40.000 28.07 3.76 41.23 2.40
184 185 6.536224 CGAATGGCATATGCATGACTATTCTA 59.464 38.462 28.07 1.19 41.23 2.10
185 186 7.226128 CGAATGGCATATGCATGACTATTCTAT 59.774 37.037 28.07 2.50 41.23 1.98
186 187 8.447924 AATGGCATATGCATGACTATTCTATC 57.552 34.615 28.07 6.92 41.23 2.08
187 188 6.949715 TGGCATATGCATGACTATTCTATCA 58.050 36.000 28.07 9.41 41.23 2.15
188 189 7.396418 TGGCATATGCATGACTATTCTATCAA 58.604 34.615 28.07 0.00 41.23 2.57
189 190 7.335171 TGGCATATGCATGACTATTCTATCAAC 59.665 37.037 28.07 5.60 41.23 3.18
190 191 7.335171 GGCATATGCATGACTATTCTATCAACA 59.665 37.037 28.07 0.00 44.36 3.33
191 192 8.890718 GCATATGCATGACTATTCTATCAACAT 58.109 33.333 22.84 0.00 41.59 2.71
232 233 9.891828 TGTTATTTCAGACACACATAATTGAAC 57.108 29.630 0.00 0.00 0.00 3.18
233 234 9.891828 GTTATTTCAGACACACATAATTGAACA 57.108 29.630 0.00 0.00 0.00 3.18
236 237 7.742556 TTCAGACACACATAATTGAACATCA 57.257 32.000 0.00 0.00 0.00 3.07
237 238 7.926674 TCAGACACACATAATTGAACATCAT 57.073 32.000 0.00 0.00 0.00 2.45
238 239 8.339344 TCAGACACACATAATTGAACATCATT 57.661 30.769 0.00 0.00 0.00 2.57
239 240 8.795513 TCAGACACACATAATTGAACATCATTT 58.204 29.630 0.00 0.00 0.00 2.32
240 241 9.069078 CAGACACACATAATTGAACATCATTTC 57.931 33.333 0.00 0.00 0.00 2.17
241 242 8.795513 AGACACACATAATTGAACATCATTTCA 58.204 29.630 0.00 0.00 33.55 2.69
242 243 9.409312 GACACACATAATTGAACATCATTTCAA 57.591 29.630 1.03 1.03 46.78 2.69
243 244 9.761504 ACACACATAATTGAACATCATTTCAAA 57.238 25.926 2.61 0.00 46.06 2.69
247 248 9.775854 ACATAATTGAACATCATTTCAAAACCA 57.224 25.926 2.61 0.00 46.06 3.67
249 250 9.775854 ATAATTGAACATCATTTCAAAACCACA 57.224 25.926 2.61 0.00 46.06 4.17
250 251 8.503458 AATTGAACATCATTTCAAAACCACAA 57.497 26.923 2.61 0.00 46.06 3.33
251 252 8.680039 ATTGAACATCATTTCAAAACCACAAT 57.320 26.923 2.61 0.00 46.06 2.71
252 253 8.503458 TTGAACATCATTTCAAAACCACAATT 57.497 26.923 0.00 0.00 41.48 2.32
253 254 8.503458 TGAACATCATTTCAAAACCACAATTT 57.497 26.923 0.00 0.00 32.42 1.82
254 255 9.605275 TGAACATCATTTCAAAACCACAATTTA 57.395 25.926 0.00 0.00 32.42 1.40
257 258 9.775854 ACATCATTTCAAAACCACAATTTATGA 57.224 25.926 0.00 0.00 0.00 2.15
260 261 9.829507 TCATTTCAAAACCACAATTTATGAAGT 57.170 25.926 0.00 0.00 0.00 3.01
264 265 9.658799 TTCAAAACCACAATTTATGAAGTTTGA 57.341 25.926 0.00 0.00 37.63 2.69
265 266 9.829507 TCAAAACCACAATTTATGAAGTTTGAT 57.170 25.926 0.00 0.00 37.63 2.57
269 270 9.829507 AACCACAATTTATGAAGTTTGATTTGA 57.170 25.926 0.00 0.00 0.00 2.69
270 271 9.829507 ACCACAATTTATGAAGTTTGATTTGAA 57.170 25.926 0.00 0.00 0.00 2.69
296 297 9.787532 AATTCAAATAGACACATAACAAATCCG 57.212 29.630 0.00 0.00 0.00 4.18
297 298 7.315247 TCAAATAGACACATAACAAATCCGG 57.685 36.000 0.00 0.00 0.00 5.14
298 299 6.882140 TCAAATAGACACATAACAAATCCGGT 59.118 34.615 0.00 0.00 0.00 5.28
299 300 8.041919 TCAAATAGACACATAACAAATCCGGTA 58.958 33.333 0.00 0.00 0.00 4.02
300 301 8.670135 CAAATAGACACATAACAAATCCGGTAA 58.330 33.333 0.00 0.00 0.00 2.85
301 302 8.795842 AATAGACACATAACAAATCCGGTAAA 57.204 30.769 0.00 0.00 0.00 2.01
302 303 8.974060 ATAGACACATAACAAATCCGGTAAAT 57.026 30.769 0.00 0.00 0.00 1.40
303 304 7.083875 AGACACATAACAAATCCGGTAAATG 57.916 36.000 0.00 0.00 0.00 2.32
304 305 6.882140 AGACACATAACAAATCCGGTAAATGA 59.118 34.615 0.00 0.00 0.00 2.57
305 306 7.556275 AGACACATAACAAATCCGGTAAATGAT 59.444 33.333 0.00 0.00 0.00 2.45
306 307 8.062065 ACACATAACAAATCCGGTAAATGATT 57.938 30.769 0.00 0.00 32.72 2.57
307 308 8.188139 ACACATAACAAATCCGGTAAATGATTC 58.812 33.333 0.00 0.00 31.05 2.52
308 309 8.187480 CACATAACAAATCCGGTAAATGATTCA 58.813 33.333 0.00 0.00 31.05 2.57
309 310 8.744652 ACATAACAAATCCGGTAAATGATTCAA 58.255 29.630 0.00 0.00 31.05 2.69
310 311 9.579768 CATAACAAATCCGGTAAATGATTCAAA 57.420 29.630 0.00 0.00 31.05 2.69
314 315 9.801873 ACAAATCCGGTAAATGATTCAAAATAG 57.198 29.630 0.00 0.00 31.05 1.73
317 318 8.746052 ATCCGGTAAATGATTCAAAATAGACA 57.254 30.769 0.00 0.00 0.00 3.41
318 319 7.981142 TCCGGTAAATGATTCAAAATAGACAC 58.019 34.615 0.00 0.00 0.00 3.67
319 320 7.608376 TCCGGTAAATGATTCAAAATAGACACA 59.392 33.333 0.00 0.00 0.00 3.72
320 321 8.240682 CCGGTAAATGATTCAAAATAGACACAA 58.759 33.333 0.00 0.00 0.00 3.33
321 322 9.061610 CGGTAAATGATTCAAAATAGACACAAC 57.938 33.333 0.00 0.00 0.00 3.32
322 323 9.906660 GGTAAATGATTCAAAATAGACACAACA 57.093 29.630 0.00 0.00 0.00 3.33
327 328 8.815141 TGATTCAAAATAGACACAACAAATGG 57.185 30.769 0.00 0.00 0.00 3.16
328 329 8.420222 TGATTCAAAATAGACACAACAAATGGT 58.580 29.630 0.00 0.00 0.00 3.55
329 330 9.260002 GATTCAAAATAGACACAACAAATGGTT 57.740 29.630 0.00 0.00 41.47 3.67
330 331 8.641499 TTCAAAATAGACACAACAAATGGTTC 57.359 30.769 0.00 0.00 37.72 3.62
331 332 7.776107 TCAAAATAGACACAACAAATGGTTCA 58.224 30.769 0.00 0.00 37.72 3.18
332 333 8.253810 TCAAAATAGACACAACAAATGGTTCAA 58.746 29.630 0.00 0.00 37.72 2.69
333 334 8.877779 CAAAATAGACACAACAAATGGTTCAAA 58.122 29.630 0.00 0.00 37.72 2.69
334 335 9.442047 AAAATAGACACAACAAATGGTTCAAAA 57.558 25.926 0.00 0.00 37.72 2.44
335 336 9.442047 AAATAGACACAACAAATGGTTCAAAAA 57.558 25.926 0.00 0.00 37.72 1.94
336 337 6.966435 AGACACAACAAATGGTTCAAAAAG 57.034 33.333 0.00 0.00 37.72 2.27
337 338 5.874261 AGACACAACAAATGGTTCAAAAAGG 59.126 36.000 0.00 0.00 37.72 3.11
338 339 5.799213 ACACAACAAATGGTTCAAAAAGGA 58.201 33.333 0.00 0.00 37.72 3.36
339 340 6.234177 ACACAACAAATGGTTCAAAAAGGAA 58.766 32.000 0.00 0.00 37.72 3.36
340 341 6.371271 ACACAACAAATGGTTCAAAAAGGAAG 59.629 34.615 0.00 0.00 37.72 3.46
341 342 6.593382 CACAACAAATGGTTCAAAAAGGAAGA 59.407 34.615 0.00 0.00 37.72 2.87
342 343 7.280652 CACAACAAATGGTTCAAAAAGGAAGAT 59.719 33.333 0.00 0.00 37.72 2.40
343 344 7.495606 ACAACAAATGGTTCAAAAAGGAAGATC 59.504 33.333 0.00 0.00 37.72 2.75
344 345 7.123355 ACAAATGGTTCAAAAAGGAAGATCA 57.877 32.000 0.00 0.00 0.00 2.92
345 346 7.563906 ACAAATGGTTCAAAAAGGAAGATCAA 58.436 30.769 0.00 0.00 0.00 2.57
346 347 7.495606 ACAAATGGTTCAAAAAGGAAGATCAAC 59.504 33.333 0.00 0.00 0.00 3.18
347 348 5.529581 TGGTTCAAAAAGGAAGATCAACC 57.470 39.130 0.00 0.00 33.92 3.77
348 349 4.959210 TGGTTCAAAAAGGAAGATCAACCA 59.041 37.500 10.11 6.86 39.73 3.67
349 350 5.602145 TGGTTCAAAAAGGAAGATCAACCAT 59.398 36.000 10.11 0.00 37.67 3.55
350 351 5.928264 GGTTCAAAAAGGAAGATCAACCATG 59.072 40.000 10.11 0.00 33.59 3.66
351 352 5.138125 TCAAAAAGGAAGATCAACCATGC 57.862 39.130 10.11 0.00 0.00 4.06
352 353 4.588106 TCAAAAAGGAAGATCAACCATGCA 59.412 37.500 10.11 0.00 0.00 3.96
353 354 5.070180 TCAAAAAGGAAGATCAACCATGCAA 59.930 36.000 10.11 0.00 0.00 4.08
354 355 4.525912 AAAGGAAGATCAACCATGCAAC 57.474 40.909 10.11 0.00 0.00 4.17
355 356 3.159213 AGGAAGATCAACCATGCAACA 57.841 42.857 10.11 0.00 0.00 3.33
356 357 3.705051 AGGAAGATCAACCATGCAACAT 58.295 40.909 10.11 0.00 0.00 2.71
357 358 4.858850 AGGAAGATCAACCATGCAACATA 58.141 39.130 10.11 0.00 0.00 2.29
358 359 5.452255 AGGAAGATCAACCATGCAACATAT 58.548 37.500 10.11 0.00 0.00 1.78
359 360 5.301045 AGGAAGATCAACCATGCAACATATG 59.699 40.000 0.00 0.00 0.00 1.78
366 367 3.441496 CCATGCAACATATGGTTCACC 57.559 47.619 7.80 0.00 40.15 4.02
367 368 3.025978 CCATGCAACATATGGTTCACCT 58.974 45.455 7.80 0.00 40.15 4.00
368 369 4.206375 CCATGCAACATATGGTTCACCTA 58.794 43.478 7.80 0.00 40.15 3.08
369 370 4.644234 CCATGCAACATATGGTTCACCTAA 59.356 41.667 7.80 0.00 40.15 2.69
370 371 5.450412 CCATGCAACATATGGTTCACCTAAC 60.450 44.000 7.80 0.00 40.15 2.34
371 372 3.687212 TGCAACATATGGTTCACCTAACG 59.313 43.478 7.80 0.00 37.72 3.18
372 373 3.936453 GCAACATATGGTTCACCTAACGA 59.064 43.478 7.80 0.00 37.72 3.85
373 374 4.393680 GCAACATATGGTTCACCTAACGAA 59.606 41.667 7.80 0.00 37.72 3.85
374 375 5.447279 GCAACATATGGTTCACCTAACGAAG 60.447 44.000 7.80 0.00 37.72 3.79
375 376 5.670792 ACATATGGTTCACCTAACGAAGA 57.329 39.130 7.80 0.00 39.13 2.87
376 377 5.416947 ACATATGGTTCACCTAACGAAGAC 58.583 41.667 7.80 0.00 39.13 3.01
377 378 5.046878 ACATATGGTTCACCTAACGAAGACA 60.047 40.000 7.80 0.00 39.13 3.41
378 379 4.553330 ATGGTTCACCTAACGAAGACAT 57.447 40.909 0.00 0.00 39.13 3.06
379 380 3.921677 TGGTTCACCTAACGAAGACATC 58.078 45.455 0.00 0.00 39.13 3.06
380 381 3.322541 TGGTTCACCTAACGAAGACATCA 59.677 43.478 0.00 0.00 39.13 3.07
381 382 4.202274 TGGTTCACCTAACGAAGACATCAA 60.202 41.667 0.00 0.00 39.13 2.57
382 383 4.935808 GGTTCACCTAACGAAGACATCAAT 59.064 41.667 0.00 0.00 39.13 2.57
383 384 5.063564 GGTTCACCTAACGAAGACATCAATC 59.936 44.000 0.00 0.00 39.13 2.67
384 385 5.400066 TCACCTAACGAAGACATCAATCA 57.600 39.130 0.00 0.00 0.00 2.57
385 386 5.977635 TCACCTAACGAAGACATCAATCAT 58.022 37.500 0.00 0.00 0.00 2.45
386 387 7.107639 TCACCTAACGAAGACATCAATCATA 57.892 36.000 0.00 0.00 0.00 2.15
387 388 7.552459 TCACCTAACGAAGACATCAATCATAA 58.448 34.615 0.00 0.00 0.00 1.90
388 389 8.038351 TCACCTAACGAAGACATCAATCATAAA 58.962 33.333 0.00 0.00 0.00 1.40
389 390 8.331022 CACCTAACGAAGACATCAATCATAAAG 58.669 37.037 0.00 0.00 0.00 1.85
390 391 7.011482 ACCTAACGAAGACATCAATCATAAAGC 59.989 37.037 0.00 0.00 0.00 3.51
391 392 6.741992 AACGAAGACATCAATCATAAAGCA 57.258 33.333 0.00 0.00 0.00 3.91
392 393 6.932356 ACGAAGACATCAATCATAAAGCAT 57.068 33.333 0.00 0.00 0.00 3.79
393 394 8.437360 AACGAAGACATCAATCATAAAGCATA 57.563 30.769 0.00 0.00 0.00 3.14
394 395 8.437360 ACGAAGACATCAATCATAAAGCATAA 57.563 30.769 0.00 0.00 0.00 1.90
395 396 8.892723 ACGAAGACATCAATCATAAAGCATAAA 58.107 29.630 0.00 0.00 0.00 1.40
396 397 9.162793 CGAAGACATCAATCATAAAGCATAAAC 57.837 33.333 0.00 0.00 0.00 2.01
399 400 9.399797 AGACATCAATCATAAAGCATAAACAGA 57.600 29.630 0.00 0.00 0.00 3.41
414 415 9.842775 AGCATAAACAGAAAGATCAATCATAGA 57.157 29.630 0.00 0.00 0.00 1.98
417 418 9.842775 ATAAACAGAAAGATCAATCATAGAGCA 57.157 29.630 0.00 0.00 0.00 4.26
418 419 8.749026 AAACAGAAAGATCAATCATAGAGCAT 57.251 30.769 0.00 0.00 0.00 3.79
419 420 7.966246 ACAGAAAGATCAATCATAGAGCATC 57.034 36.000 0.00 0.00 0.00 3.91
420 421 7.506971 ACAGAAAGATCAATCATAGAGCATCA 58.493 34.615 0.00 0.00 37.82 3.07
421 422 8.158132 ACAGAAAGATCAATCATAGAGCATCAT 58.842 33.333 0.00 0.00 37.82 2.45
422 423 9.004717 CAGAAAGATCAATCATAGAGCATCATT 57.995 33.333 0.00 0.00 37.82 2.57
423 424 9.221933 AGAAAGATCAATCATAGAGCATCATTC 57.778 33.333 0.00 0.00 37.82 2.67
424 425 7.925043 AAGATCAATCATAGAGCATCATTCC 57.075 36.000 0.00 0.00 37.82 3.01
425 426 6.416415 AGATCAATCATAGAGCATCATTCCC 58.584 40.000 0.00 0.00 37.82 3.97
426 427 4.572909 TCAATCATAGAGCATCATTCCCG 58.427 43.478 0.00 0.00 37.82 5.14
427 428 4.284234 TCAATCATAGAGCATCATTCCCGA 59.716 41.667 0.00 0.00 37.82 5.14
428 429 3.667497 TCATAGAGCATCATTCCCGAC 57.333 47.619 0.00 0.00 37.82 4.79
429 430 3.234353 TCATAGAGCATCATTCCCGACT 58.766 45.455 0.00 0.00 37.82 4.18
430 431 3.643320 TCATAGAGCATCATTCCCGACTT 59.357 43.478 0.00 0.00 37.82 3.01
431 432 2.611225 AGAGCATCATTCCCGACTTC 57.389 50.000 0.00 0.00 37.82 3.01
432 433 1.139853 AGAGCATCATTCCCGACTTCC 59.860 52.381 0.00 0.00 37.82 3.46
433 434 0.911769 AGCATCATTCCCGACTTCCA 59.088 50.000 0.00 0.00 0.00 3.53
434 435 1.492176 AGCATCATTCCCGACTTCCAT 59.508 47.619 0.00 0.00 0.00 3.41
435 436 2.092212 AGCATCATTCCCGACTTCCATT 60.092 45.455 0.00 0.00 0.00 3.16
536 537 9.939802 TCTAGTGTAGTATTTCTTTCCTTTTCC 57.060 33.333 0.00 0.00 0.00 3.13
564 565 7.115414 TCTACCCTACCTACTGTTTTCTAGAC 58.885 42.308 0.00 0.00 0.00 2.59
567 568 5.360429 CCCTACCTACTGTTTTCTAGACTCC 59.640 48.000 0.00 0.00 0.00 3.85
569 570 7.344913 CCTACCTACTGTTTTCTAGACTCCTA 58.655 42.308 0.00 0.00 0.00 2.94
649 650 9.575783 GTATTCCAGCTATAAGTAGAAGTATGC 57.424 37.037 0.00 0.00 0.00 3.14
682 683 6.331572 TCCCAAAGCCATATAAATAGAGGTCA 59.668 38.462 0.00 0.00 0.00 4.02
816 818 3.498774 CTGCCCTATCAGCCTACATTT 57.501 47.619 0.00 0.00 0.00 2.32
991 993 1.273606 TCCTCTTCGAGAGCAAGTTGG 59.726 52.381 4.75 0.00 40.98 3.77
1053 1055 4.678742 GCTGAACAACAAATCAAAGAGCTC 59.321 41.667 5.27 5.27 0.00 4.09
1110 1112 5.476945 GGTTGACATGATAAGAAAGGGTGTT 59.523 40.000 0.00 0.00 0.00 3.32
1199 1201 2.048222 TCTTGGAGCAAGACCGCG 60.048 61.111 0.00 0.00 44.27 6.46
1282 1284 6.044754 AGGTGAAGAATATGATGATGCCCTTA 59.955 38.462 0.00 0.00 0.00 2.69
1286 1288 7.449395 TGAAGAATATGATGATGCCCTTAAAGG 59.551 37.037 0.00 0.00 34.30 3.11
1300 1302 5.572885 GCCCTTAAAGGACCAAATCTCTACA 60.573 44.000 0.00 0.00 37.67 2.74
1307 1309 7.437713 AAGGACCAAATCTCTACACATATCA 57.562 36.000 0.00 0.00 0.00 2.15
1626 1631 3.354467 CTCCTAACTACTCCTGGTCGTT 58.646 50.000 0.00 0.00 37.54 3.85
1709 1715 0.399091 CTCCTGGGCTCCACCATCTA 60.399 60.000 0.00 0.00 40.36 1.98
1829 1845 6.041979 ACTTTGCAACATTATCAAAGGAAGGT 59.958 34.615 15.49 0.00 46.45 3.50
1929 1947 1.636148 AACCACCATCTTGCAGCAAT 58.364 45.000 8.67 0.00 0.00 3.56
2032 2050 3.866910 GCAACATATCCAAAACATGCCTG 59.133 43.478 0.00 0.00 0.00 4.85
2168 2186 1.111116 TCGATTAACTCCGGCCGGAT 61.111 55.000 45.15 33.75 44.24 4.18
2169 2187 0.944311 CGATTAACTCCGGCCGGATG 60.944 60.000 45.15 36.42 44.24 3.51
2170 2188 0.391597 GATTAACTCCGGCCGGATGA 59.608 55.000 45.15 29.24 44.24 2.92
2171 2189 1.002087 GATTAACTCCGGCCGGATGAT 59.998 52.381 45.15 32.37 44.24 2.45
2172 2190 1.707106 TTAACTCCGGCCGGATGATA 58.293 50.000 45.15 32.22 44.24 2.15
2173 2191 0.963962 TAACTCCGGCCGGATGATAC 59.036 55.000 45.15 0.00 44.24 2.24
2174 2192 1.046472 AACTCCGGCCGGATGATACA 61.046 55.000 45.15 23.12 44.24 2.29
2175 2193 0.832135 ACTCCGGCCGGATGATACAT 60.832 55.000 45.15 21.92 44.24 2.29
2176 2194 0.108615 CTCCGGCCGGATGATACATC 60.109 60.000 45.15 0.00 44.24 3.06
2177 2195 1.079127 CCGGCCGGATGATACATCC 60.079 63.158 41.82 17.65 37.50 3.51
2178 2196 1.671166 CGGCCGGATGATACATCCA 59.329 57.895 20.10 0.00 38.08 3.41
2179 2197 0.250234 CGGCCGGATGATACATCCAT 59.750 55.000 20.10 0.00 38.08 3.41
2180 2198 1.339055 CGGCCGGATGATACATCCATT 60.339 52.381 20.10 0.00 38.08 3.16
2181 2199 2.795329 GGCCGGATGATACATCCATTT 58.205 47.619 24.25 0.00 38.08 2.32
2182 2200 3.157087 GGCCGGATGATACATCCATTTT 58.843 45.455 24.25 0.00 38.08 1.82
2183 2201 3.057315 GGCCGGATGATACATCCATTTTG 60.057 47.826 24.25 11.62 38.08 2.44
2184 2202 3.612479 GCCGGATGATACATCCATTTTGC 60.612 47.826 24.25 15.97 38.08 3.68
2185 2203 3.569277 CCGGATGATACATCCATTTTGCA 59.431 43.478 24.25 0.00 38.08 4.08
2186 2204 4.219070 CCGGATGATACATCCATTTTGCAT 59.781 41.667 24.25 0.00 38.08 3.96
2187 2205 5.396484 CGGATGATACATCCATTTTGCATC 58.604 41.667 24.25 0.00 38.08 3.91
2188 2206 5.048573 CGGATGATACATCCATTTTGCATCA 60.049 40.000 24.25 0.00 38.08 3.07
2189 2207 6.349860 CGGATGATACATCCATTTTGCATCAT 60.350 38.462 24.25 0.24 39.28 2.45
2190 2208 6.811665 GGATGATACATCCATTTTGCATCATG 59.188 38.462 21.28 0.00 37.59 3.07
2191 2209 5.534407 TGATACATCCATTTTGCATCATGC 58.466 37.500 1.35 1.35 45.29 4.06
2192 2210 5.303333 TGATACATCCATTTTGCATCATGCT 59.697 36.000 11.84 0.00 45.31 3.79
2193 2211 4.481368 ACATCCATTTTGCATCATGCTT 57.519 36.364 11.84 0.00 45.31 3.91
2194 2212 4.839121 ACATCCATTTTGCATCATGCTTT 58.161 34.783 11.84 0.00 45.31 3.51
2195 2213 5.250200 ACATCCATTTTGCATCATGCTTTT 58.750 33.333 11.84 0.00 45.31 2.27
2196 2214 6.408035 ACATCCATTTTGCATCATGCTTTTA 58.592 32.000 11.84 0.00 45.31 1.52
2197 2215 7.051623 ACATCCATTTTGCATCATGCTTTTAT 58.948 30.769 11.84 0.00 45.31 1.40
2198 2216 8.205512 ACATCCATTTTGCATCATGCTTTTATA 58.794 29.630 11.84 0.00 45.31 0.98
2199 2217 9.214957 CATCCATTTTGCATCATGCTTTTATAT 57.785 29.630 11.84 0.00 45.31 0.86
2200 2218 9.787435 ATCCATTTTGCATCATGCTTTTATATT 57.213 25.926 11.84 0.00 45.31 1.28
2201 2219 9.047371 TCCATTTTGCATCATGCTTTTATATTG 57.953 29.630 11.84 0.00 45.31 1.90
2202 2220 9.047371 CCATTTTGCATCATGCTTTTATATTGA 57.953 29.630 11.84 0.00 45.31 2.57
2233 2251 7.822161 TTGCATTATGGACTATTATTGCACT 57.178 32.000 0.00 0.00 0.00 4.40
2234 2252 7.822161 TGCATTATGGACTATTATTGCACTT 57.178 32.000 0.00 0.00 0.00 3.16
2235 2253 8.236585 TGCATTATGGACTATTATTGCACTTT 57.763 30.769 0.00 0.00 0.00 2.66
2236 2254 9.348476 TGCATTATGGACTATTATTGCACTTTA 57.652 29.630 0.00 0.00 0.00 1.85
2241 2259 8.978874 ATGGACTATTATTGCACTTTATGTCA 57.021 30.769 0.00 0.00 0.00 3.58
2242 2260 8.208718 TGGACTATTATTGCACTTTATGTCAC 57.791 34.615 0.00 0.00 0.00 3.67
2243 2261 7.826744 TGGACTATTATTGCACTTTATGTCACA 59.173 33.333 0.00 0.00 0.00 3.58
2244 2262 8.673711 GGACTATTATTGCACTTTATGTCACAA 58.326 33.333 0.00 0.00 0.00 3.33
2253 2271 7.984391 TGCACTTTATGTCACAATACTTATGG 58.016 34.615 0.00 0.00 0.00 2.74
2254 2272 6.912591 GCACTTTATGTCACAATACTTATGGC 59.087 38.462 0.00 0.00 0.00 4.40
2255 2273 7.201732 GCACTTTATGTCACAATACTTATGGCT 60.202 37.037 0.00 0.00 0.00 4.75
2256 2274 9.325198 CACTTTATGTCACAATACTTATGGCTA 57.675 33.333 0.00 0.00 0.00 3.93
2261 2279 8.839310 ATGTCACAATACTTATGGCTATTCTC 57.161 34.615 0.00 0.00 0.00 2.87
2262 2280 8.023021 TGTCACAATACTTATGGCTATTCTCT 57.977 34.615 0.00 0.00 0.00 3.10
2263 2281 8.144478 TGTCACAATACTTATGGCTATTCTCTC 58.856 37.037 0.00 0.00 0.00 3.20
2264 2282 8.364142 GTCACAATACTTATGGCTATTCTCTCT 58.636 37.037 0.00 0.00 0.00 3.10
2265 2283 8.928448 TCACAATACTTATGGCTATTCTCTCTT 58.072 33.333 0.00 0.00 0.00 2.85
2276 2294 8.964476 TGGCTATTCTCTCTTATTTTACAAGG 57.036 34.615 0.00 0.00 0.00 3.61
2277 2295 8.548877 TGGCTATTCTCTCTTATTTTACAAGGT 58.451 33.333 0.00 0.00 0.00 3.50
2278 2296 9.397280 GGCTATTCTCTCTTATTTTACAAGGTT 57.603 33.333 0.00 0.00 0.00 3.50
2292 2310 9.816787 ATTTTACAAGGTTTACATAAGAAGGGA 57.183 29.630 0.00 0.00 0.00 4.20
2293 2311 8.857694 TTTACAAGGTTTACATAAGAAGGGAG 57.142 34.615 0.00 0.00 0.00 4.30
2294 2312 6.697641 ACAAGGTTTACATAAGAAGGGAGA 57.302 37.500 0.00 0.00 0.00 3.71
2295 2313 7.086685 ACAAGGTTTACATAAGAAGGGAGAA 57.913 36.000 0.00 0.00 0.00 2.87
2296 2314 7.699878 ACAAGGTTTACATAAGAAGGGAGAAT 58.300 34.615 0.00 0.00 0.00 2.40
2297 2315 7.611855 ACAAGGTTTACATAAGAAGGGAGAATG 59.388 37.037 0.00 0.00 0.00 2.67
2298 2316 6.122964 AGGTTTACATAAGAAGGGAGAATGC 58.877 40.000 0.00 0.00 0.00 3.56
2306 2324 2.586792 GGGAGAATGCCGACAGCT 59.413 61.111 0.00 0.00 44.23 4.24
2307 2325 1.817099 GGGAGAATGCCGACAGCTG 60.817 63.158 13.48 13.48 44.23 4.24
2308 2326 1.817099 GGAGAATGCCGACAGCTGG 60.817 63.158 19.93 0.51 44.23 4.85
2309 2327 1.219124 GAGAATGCCGACAGCTGGA 59.781 57.895 19.93 0.00 44.23 3.86
2310 2328 0.391661 GAGAATGCCGACAGCTGGAA 60.392 55.000 19.93 0.00 44.23 3.53
2311 2329 0.254178 AGAATGCCGACAGCTGGAAT 59.746 50.000 19.93 0.00 44.23 3.01
2312 2330 1.098050 GAATGCCGACAGCTGGAATT 58.902 50.000 19.93 6.58 44.23 2.17
2313 2331 1.064654 GAATGCCGACAGCTGGAATTC 59.935 52.381 19.93 12.32 42.78 2.17
2314 2332 0.254178 ATGCCGACAGCTGGAATTCT 59.746 50.000 19.93 0.00 44.23 2.40
2315 2333 0.674581 TGCCGACAGCTGGAATTCTG 60.675 55.000 19.93 3.91 44.23 3.02
2316 2334 1.372087 GCCGACAGCTGGAATTCTGG 61.372 60.000 19.93 12.36 38.99 3.86
2317 2335 0.745845 CCGACAGCTGGAATTCTGGG 60.746 60.000 19.93 2.30 34.76 4.45
2318 2336 1.372087 CGACAGCTGGAATTCTGGGC 61.372 60.000 19.93 7.46 34.76 5.36
2319 2337 0.034670 GACAGCTGGAATTCTGGGCT 60.035 55.000 19.93 9.52 34.76 5.19
2320 2338 2.490165 CAGCTGGAATTCTGGGCTG 58.510 57.895 22.51 22.51 43.03 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.108111 TCCCCTAAATTATATGAATACCTCGTT 57.892 33.333 0.00 0.00 0.00 3.85
46 47 8.674925 TCCCCTAAATTATATGAATACCTCGT 57.325 34.615 0.00 0.00 0.00 4.18
47 48 8.204836 CCTCCCCTAAATTATATGAATACCTCG 58.795 40.741 0.00 0.00 0.00 4.63
48 49 9.059023 ACCTCCCCTAAATTATATGAATACCTC 57.941 37.037 0.00 0.00 0.00 3.85
49 50 9.419667 AACCTCCCCTAAATTATATGAATACCT 57.580 33.333 0.00 0.00 0.00 3.08
50 51 9.682465 GAACCTCCCCTAAATTATATGAATACC 57.318 37.037 0.00 0.00 0.00 2.73
53 54 9.411848 AGAGAACCTCCCCTAAATTATATGAAT 57.588 33.333 0.00 0.00 0.00 2.57
54 55 8.660435 CAGAGAACCTCCCCTAAATTATATGAA 58.340 37.037 0.00 0.00 0.00 2.57
55 56 7.237679 CCAGAGAACCTCCCCTAAATTATATGA 59.762 40.741 0.00 0.00 0.00 2.15
56 57 7.017651 ACCAGAGAACCTCCCCTAAATTATATG 59.982 40.741 0.00 0.00 0.00 1.78
57 58 7.017651 CACCAGAGAACCTCCCCTAAATTATAT 59.982 40.741 0.00 0.00 0.00 0.86
58 59 6.329197 CACCAGAGAACCTCCCCTAAATTATA 59.671 42.308 0.00 0.00 0.00 0.98
59 60 5.132816 CACCAGAGAACCTCCCCTAAATTAT 59.867 44.000 0.00 0.00 0.00 1.28
60 61 4.473559 CACCAGAGAACCTCCCCTAAATTA 59.526 45.833 0.00 0.00 0.00 1.40
61 62 3.267031 CACCAGAGAACCTCCCCTAAATT 59.733 47.826 0.00 0.00 0.00 1.82
62 63 2.846827 CACCAGAGAACCTCCCCTAAAT 59.153 50.000 0.00 0.00 0.00 1.40
63 64 2.266279 CACCAGAGAACCTCCCCTAAA 58.734 52.381 0.00 0.00 0.00 1.85
64 65 1.151413 ACACCAGAGAACCTCCCCTAA 59.849 52.381 0.00 0.00 0.00 2.69
65 66 0.790993 ACACCAGAGAACCTCCCCTA 59.209 55.000 0.00 0.00 0.00 3.53
66 67 0.838122 CACACCAGAGAACCTCCCCT 60.838 60.000 0.00 0.00 0.00 4.79
67 68 1.679898 CACACCAGAGAACCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
68 69 1.128188 ACCACACCAGAGAACCTCCC 61.128 60.000 0.00 0.00 0.00 4.30
69 70 0.035458 CACCACACCAGAGAACCTCC 59.965 60.000 0.00 0.00 0.00 4.30
70 71 0.759346 ACACCACACCAGAGAACCTC 59.241 55.000 0.00 0.00 0.00 3.85
71 72 1.213296 AACACCACACCAGAGAACCT 58.787 50.000 0.00 0.00 0.00 3.50
72 73 2.052782 AAACACCACACCAGAGAACC 57.947 50.000 0.00 0.00 0.00 3.62
73 74 3.769536 CAAAAACACCACACCAGAGAAC 58.230 45.455 0.00 0.00 0.00 3.01
74 75 2.165437 GCAAAAACACCACACCAGAGAA 59.835 45.455 0.00 0.00 0.00 2.87
75 76 1.748493 GCAAAAACACCACACCAGAGA 59.252 47.619 0.00 0.00 0.00 3.10
76 77 1.476085 TGCAAAAACACCACACCAGAG 59.524 47.619 0.00 0.00 0.00 3.35
77 78 1.550327 TGCAAAAACACCACACCAGA 58.450 45.000 0.00 0.00 0.00 3.86
78 79 2.270047 CTTGCAAAAACACCACACCAG 58.730 47.619 0.00 0.00 0.00 4.00
79 80 1.620819 ACTTGCAAAAACACCACACCA 59.379 42.857 0.00 0.00 0.00 4.17
80 81 2.267426 GACTTGCAAAAACACCACACC 58.733 47.619 0.00 0.00 0.00 4.16
81 82 2.094234 AGGACTTGCAAAAACACCACAC 60.094 45.455 0.00 0.00 0.00 3.82
82 83 2.165437 GAGGACTTGCAAAAACACCACA 59.835 45.455 0.00 0.00 0.00 4.17
83 84 2.427095 AGAGGACTTGCAAAAACACCAC 59.573 45.455 0.00 0.00 0.00 4.16
84 85 2.733956 AGAGGACTTGCAAAAACACCA 58.266 42.857 0.00 0.00 0.00 4.17
85 86 5.472137 TGTATAGAGGACTTGCAAAAACACC 59.528 40.000 0.00 0.00 0.00 4.16
86 87 6.554334 TGTATAGAGGACTTGCAAAAACAC 57.446 37.500 0.00 0.00 0.00 3.32
87 88 7.168219 AGATGTATAGAGGACTTGCAAAAACA 58.832 34.615 0.00 0.00 0.00 2.83
88 89 7.617041 AGATGTATAGAGGACTTGCAAAAAC 57.383 36.000 0.00 0.00 0.00 2.43
89 90 7.336931 GGAAGATGTATAGAGGACTTGCAAAAA 59.663 37.037 0.00 0.00 0.00 1.94
90 91 6.823689 GGAAGATGTATAGAGGACTTGCAAAA 59.176 38.462 0.00 0.00 0.00 2.44
91 92 6.349300 GGAAGATGTATAGAGGACTTGCAAA 58.651 40.000 0.00 0.00 0.00 3.68
92 93 5.163301 GGGAAGATGTATAGAGGACTTGCAA 60.163 44.000 0.00 0.00 0.00 4.08
93 94 4.345257 GGGAAGATGTATAGAGGACTTGCA 59.655 45.833 0.00 0.00 0.00 4.08
94 95 4.262678 GGGGAAGATGTATAGAGGACTTGC 60.263 50.000 0.00 0.00 0.00 4.01
95 96 5.011533 CAGGGGAAGATGTATAGAGGACTTG 59.988 48.000 0.00 0.00 0.00 3.16
96 97 5.103043 TCAGGGGAAGATGTATAGAGGACTT 60.103 44.000 0.00 0.00 0.00 3.01
97 98 4.420552 TCAGGGGAAGATGTATAGAGGACT 59.579 45.833 0.00 0.00 0.00 3.85
98 99 4.742012 TCAGGGGAAGATGTATAGAGGAC 58.258 47.826 0.00 0.00 0.00 3.85
99 100 5.418692 TTCAGGGGAAGATGTATAGAGGA 57.581 43.478 0.00 0.00 0.00 3.71
100 101 5.366768 TGTTTCAGGGGAAGATGTATAGAGG 59.633 44.000 0.00 0.00 33.82 3.69
101 102 6.485830 TGTTTCAGGGGAAGATGTATAGAG 57.514 41.667 0.00 0.00 33.82 2.43
102 103 6.386927 ACATGTTTCAGGGGAAGATGTATAGA 59.613 38.462 0.00 0.00 36.73 1.98
103 104 6.595682 ACATGTTTCAGGGGAAGATGTATAG 58.404 40.000 0.00 0.00 36.73 1.31
104 105 6.575244 ACATGTTTCAGGGGAAGATGTATA 57.425 37.500 0.00 0.00 36.73 1.47
105 106 5.456921 ACATGTTTCAGGGGAAGATGTAT 57.543 39.130 0.00 0.00 36.73 2.29
106 107 4.927267 ACATGTTTCAGGGGAAGATGTA 57.073 40.909 0.00 0.00 36.73 2.29
107 108 3.814504 ACATGTTTCAGGGGAAGATGT 57.185 42.857 0.00 0.00 35.09 3.06
108 109 5.244626 AGAAAACATGTTTCAGGGGAAGATG 59.755 40.000 23.47 0.00 33.82 2.90
109 110 5.397360 AGAAAACATGTTTCAGGGGAAGAT 58.603 37.500 23.47 4.47 33.82 2.40
110 111 4.803452 AGAAAACATGTTTCAGGGGAAGA 58.197 39.130 23.47 0.00 33.82 2.87
111 112 5.302823 AGAAGAAAACATGTTTCAGGGGAAG 59.697 40.000 23.47 0.00 33.82 3.46
112 113 5.208121 AGAAGAAAACATGTTTCAGGGGAA 58.792 37.500 23.47 0.00 31.45 3.97
113 114 4.803452 AGAAGAAAACATGTTTCAGGGGA 58.197 39.130 23.47 0.00 31.45 4.81
114 115 5.535753 AAGAAGAAAACATGTTTCAGGGG 57.464 39.130 23.47 0.00 31.45 4.79
115 116 9.546428 AAATAAAGAAGAAAACATGTTTCAGGG 57.454 29.630 23.47 0.00 31.45 4.45
139 140 8.717821 CCATTCGTATGTTAGTTTGAAGAGAAA 58.282 33.333 1.16 0.00 0.00 2.52
140 141 7.148474 GCCATTCGTATGTTAGTTTGAAGAGAA 60.148 37.037 1.16 0.00 0.00 2.87
141 142 6.312918 GCCATTCGTATGTTAGTTTGAAGAGA 59.687 38.462 1.16 0.00 0.00 3.10
142 143 6.092122 TGCCATTCGTATGTTAGTTTGAAGAG 59.908 38.462 1.16 0.00 0.00 2.85
143 144 5.935206 TGCCATTCGTATGTTAGTTTGAAGA 59.065 36.000 1.16 0.00 0.00 2.87
144 145 6.176975 TGCCATTCGTATGTTAGTTTGAAG 57.823 37.500 1.16 0.00 0.00 3.02
145 146 6.751514 ATGCCATTCGTATGTTAGTTTGAA 57.248 33.333 1.16 0.00 0.00 2.69
146 147 7.519809 GCATATGCCATTCGTATGTTAGTTTGA 60.520 37.037 17.26 0.00 43.42 2.69
147 148 6.578545 GCATATGCCATTCGTATGTTAGTTTG 59.421 38.462 17.26 0.00 43.42 2.93
148 149 6.262049 TGCATATGCCATTCGTATGTTAGTTT 59.738 34.615 24.54 0.00 43.42 2.66
149 150 5.762711 TGCATATGCCATTCGTATGTTAGTT 59.237 36.000 24.54 0.00 43.42 2.24
150 151 5.304778 TGCATATGCCATTCGTATGTTAGT 58.695 37.500 24.54 0.00 43.42 2.24
151 152 5.861222 TGCATATGCCATTCGTATGTTAG 57.139 39.130 24.54 0.00 43.42 2.34
152 153 5.936956 TCATGCATATGCCATTCGTATGTTA 59.063 36.000 24.54 1.54 43.42 2.41
153 154 4.761227 TCATGCATATGCCATTCGTATGTT 59.239 37.500 24.54 0.00 43.42 2.71
154 155 4.154737 GTCATGCATATGCCATTCGTATGT 59.845 41.667 24.54 0.00 43.42 2.29
155 156 4.393990 AGTCATGCATATGCCATTCGTATG 59.606 41.667 24.54 18.04 44.02 2.39
156 157 4.582869 AGTCATGCATATGCCATTCGTAT 58.417 39.130 24.54 6.91 41.18 3.06
157 158 4.006780 AGTCATGCATATGCCATTCGTA 57.993 40.909 24.54 4.62 41.18 3.43
158 159 2.854963 AGTCATGCATATGCCATTCGT 58.145 42.857 24.54 2.64 41.18 3.85
159 160 5.353400 AGAATAGTCATGCATATGCCATTCG 59.647 40.000 24.54 8.64 41.18 3.34
160 161 6.754702 AGAATAGTCATGCATATGCCATTC 57.245 37.500 24.54 19.34 41.18 2.67
161 162 8.050930 TGATAGAATAGTCATGCATATGCCATT 58.949 33.333 24.54 13.16 41.18 3.16
162 163 7.571025 TGATAGAATAGTCATGCATATGCCAT 58.429 34.615 24.54 14.71 41.18 4.40
163 164 6.949715 TGATAGAATAGTCATGCATATGCCA 58.050 36.000 24.54 13.08 41.18 4.92
164 165 7.335171 TGTTGATAGAATAGTCATGCATATGCC 59.665 37.037 24.54 9.30 41.18 4.40
165 166 8.260270 TGTTGATAGAATAGTCATGCATATGC 57.740 34.615 21.09 21.09 42.50 3.14
206 207 9.891828 GTTCAATTATGTGTGTCTGAAATAACA 57.108 29.630 0.00 0.00 0.00 2.41
207 208 9.891828 TGTTCAATTATGTGTGTCTGAAATAAC 57.108 29.630 0.00 0.00 0.00 1.89
210 211 8.795513 TGATGTTCAATTATGTGTGTCTGAAAT 58.204 29.630 0.00 0.00 0.00 2.17
211 212 8.164058 TGATGTTCAATTATGTGTGTCTGAAA 57.836 30.769 0.00 0.00 0.00 2.69
212 213 7.742556 TGATGTTCAATTATGTGTGTCTGAA 57.257 32.000 0.00 0.00 0.00 3.02
213 214 7.926674 ATGATGTTCAATTATGTGTGTCTGA 57.073 32.000 0.00 0.00 0.00 3.27
214 215 8.975410 AAATGATGTTCAATTATGTGTGTCTG 57.025 30.769 0.00 0.00 0.00 3.51
215 216 8.795513 TGAAATGATGTTCAATTATGTGTGTCT 58.204 29.630 0.00 0.00 34.59 3.41
216 217 8.969121 TGAAATGATGTTCAATTATGTGTGTC 57.031 30.769 0.00 0.00 34.59 3.67
217 218 9.761504 TTTGAAATGATGTTCAATTATGTGTGT 57.238 25.926 1.52 0.00 44.71 3.72
221 222 9.775854 TGGTTTTGAAATGATGTTCAATTATGT 57.224 25.926 1.52 0.00 44.71 2.29
223 224 9.775854 TGTGGTTTTGAAATGATGTTCAATTAT 57.224 25.926 1.52 0.00 44.71 1.28
224 225 9.605275 TTGTGGTTTTGAAATGATGTTCAATTA 57.395 25.926 1.52 0.00 44.71 1.40
225 226 8.503458 TTGTGGTTTTGAAATGATGTTCAATT 57.497 26.923 1.52 0.00 44.71 2.32
226 227 8.680039 ATTGTGGTTTTGAAATGATGTTCAAT 57.320 26.923 1.52 0.00 44.71 2.57
227 228 8.503458 AATTGTGGTTTTGAAATGATGTTCAA 57.497 26.923 0.00 0.00 43.92 2.69
228 229 8.503458 AAATTGTGGTTTTGAAATGATGTTCA 57.497 26.923 0.00 0.00 35.72 3.18
231 232 9.775854 TCATAAATTGTGGTTTTGAAATGATGT 57.224 25.926 0.00 0.00 0.00 3.06
234 235 9.829507 ACTTCATAAATTGTGGTTTTGAAATGA 57.170 25.926 0.00 0.00 0.00 2.57
238 239 9.658799 TCAAACTTCATAAATTGTGGTTTTGAA 57.341 25.926 9.78 0.00 32.93 2.69
239 240 9.829507 ATCAAACTTCATAAATTGTGGTTTTGA 57.170 25.926 12.57 12.57 32.93 2.69
243 244 9.829507 TCAAATCAAACTTCATAAATTGTGGTT 57.170 25.926 0.00 0.00 0.00 3.67
244 245 9.829507 TTCAAATCAAACTTCATAAATTGTGGT 57.170 25.926 0.00 0.00 0.00 4.16
270 271 9.787532 CGGATTTGTTATGTGTCTATTTGAATT 57.212 29.630 0.00 0.00 0.00 2.17
271 272 8.405531 CCGGATTTGTTATGTGTCTATTTGAAT 58.594 33.333 0.00 0.00 0.00 2.57
272 273 7.392113 ACCGGATTTGTTATGTGTCTATTTGAA 59.608 33.333 9.46 0.00 0.00 2.69
273 274 6.882140 ACCGGATTTGTTATGTGTCTATTTGA 59.118 34.615 9.46 0.00 0.00 2.69
274 275 7.083875 ACCGGATTTGTTATGTGTCTATTTG 57.916 36.000 9.46 0.00 0.00 2.32
275 276 8.795842 TTACCGGATTTGTTATGTGTCTATTT 57.204 30.769 9.46 0.00 0.00 1.40
276 277 8.795842 TTTACCGGATTTGTTATGTGTCTATT 57.204 30.769 9.46 0.00 0.00 1.73
277 278 8.836413 CATTTACCGGATTTGTTATGTGTCTAT 58.164 33.333 9.46 0.00 0.00 1.98
278 279 8.041919 TCATTTACCGGATTTGTTATGTGTCTA 58.958 33.333 9.46 0.00 0.00 2.59
279 280 6.882140 TCATTTACCGGATTTGTTATGTGTCT 59.118 34.615 9.46 0.00 0.00 3.41
280 281 7.079182 TCATTTACCGGATTTGTTATGTGTC 57.921 36.000 9.46 0.00 0.00 3.67
281 282 7.639113 ATCATTTACCGGATTTGTTATGTGT 57.361 32.000 9.46 0.00 0.00 3.72
282 283 8.187480 TGAATCATTTACCGGATTTGTTATGTG 58.813 33.333 9.46 0.00 34.06 3.21
283 284 8.287439 TGAATCATTTACCGGATTTGTTATGT 57.713 30.769 9.46 0.00 34.06 2.29
284 285 9.579768 TTTGAATCATTTACCGGATTTGTTATG 57.420 29.630 9.46 1.84 34.06 1.90
288 289 9.801873 CTATTTTGAATCATTTACCGGATTTGT 57.198 29.630 9.46 0.00 34.06 2.83
291 292 9.184523 TGTCTATTTTGAATCATTTACCGGATT 57.815 29.630 9.46 0.00 36.49 3.01
292 293 8.621286 GTGTCTATTTTGAATCATTTACCGGAT 58.379 33.333 9.46 0.00 0.00 4.18
293 294 7.608376 TGTGTCTATTTTGAATCATTTACCGGA 59.392 33.333 9.46 0.00 0.00 5.14
294 295 7.757526 TGTGTCTATTTTGAATCATTTACCGG 58.242 34.615 0.00 0.00 0.00 5.28
295 296 9.061610 GTTGTGTCTATTTTGAATCATTTACCG 57.938 33.333 0.00 0.00 0.00 4.02
296 297 9.906660 TGTTGTGTCTATTTTGAATCATTTACC 57.093 29.630 0.00 0.00 0.00 2.85
301 302 9.426837 CCATTTGTTGTGTCTATTTTGAATCAT 57.573 29.630 0.00 0.00 0.00 2.45
302 303 8.420222 ACCATTTGTTGTGTCTATTTTGAATCA 58.580 29.630 0.00 0.00 0.00 2.57
303 304 8.816640 ACCATTTGTTGTGTCTATTTTGAATC 57.183 30.769 0.00 0.00 0.00 2.52
304 305 9.260002 GAACCATTTGTTGTGTCTATTTTGAAT 57.740 29.630 0.00 0.00 37.29 2.57
305 306 8.253810 TGAACCATTTGTTGTGTCTATTTTGAA 58.746 29.630 0.00 0.00 37.29 2.69
306 307 7.776107 TGAACCATTTGTTGTGTCTATTTTGA 58.224 30.769 0.00 0.00 37.29 2.69
307 308 8.417780 TTGAACCATTTGTTGTGTCTATTTTG 57.582 30.769 0.00 0.00 37.29 2.44
308 309 9.442047 TTTTGAACCATTTGTTGTGTCTATTTT 57.558 25.926 0.00 0.00 37.29 1.82
309 310 9.442047 TTTTTGAACCATTTGTTGTGTCTATTT 57.558 25.926 0.00 0.00 37.29 1.40
310 311 9.097257 CTTTTTGAACCATTTGTTGTGTCTATT 57.903 29.630 0.00 0.00 37.29 1.73
311 312 7.710475 CCTTTTTGAACCATTTGTTGTGTCTAT 59.290 33.333 0.00 0.00 37.29 1.98
312 313 7.038659 CCTTTTTGAACCATTTGTTGTGTCTA 58.961 34.615 0.00 0.00 37.29 2.59
313 314 5.874261 CCTTTTTGAACCATTTGTTGTGTCT 59.126 36.000 0.00 0.00 37.29 3.41
314 315 5.872070 TCCTTTTTGAACCATTTGTTGTGTC 59.128 36.000 0.00 0.00 37.29 3.67
315 316 5.799213 TCCTTTTTGAACCATTTGTTGTGT 58.201 33.333 0.00 0.00 37.29 3.72
316 317 6.593382 TCTTCCTTTTTGAACCATTTGTTGTG 59.407 34.615 0.00 0.00 37.29 3.33
317 318 6.706295 TCTTCCTTTTTGAACCATTTGTTGT 58.294 32.000 0.00 0.00 37.29 3.32
318 319 7.495279 TGATCTTCCTTTTTGAACCATTTGTTG 59.505 33.333 0.00 0.00 37.29 3.33
319 320 7.563906 TGATCTTCCTTTTTGAACCATTTGTT 58.436 30.769 0.00 0.00 40.81 2.83
320 321 7.123355 TGATCTTCCTTTTTGAACCATTTGT 57.877 32.000 0.00 0.00 0.00 2.83
321 322 7.041848 GGTTGATCTTCCTTTTTGAACCATTTG 60.042 37.037 0.00 0.00 33.30 2.32
322 323 6.992123 GGTTGATCTTCCTTTTTGAACCATTT 59.008 34.615 0.00 0.00 33.30 2.32
323 324 6.099557 TGGTTGATCTTCCTTTTTGAACCATT 59.900 34.615 0.00 0.00 37.32 3.16
324 325 5.602145 TGGTTGATCTTCCTTTTTGAACCAT 59.398 36.000 0.00 0.00 37.32 3.55
325 326 4.959210 TGGTTGATCTTCCTTTTTGAACCA 59.041 37.500 0.00 0.00 39.36 3.67
326 327 5.529581 TGGTTGATCTTCCTTTTTGAACC 57.470 39.130 0.00 0.00 33.62 3.62
327 328 5.406477 GCATGGTTGATCTTCCTTTTTGAAC 59.594 40.000 0.00 0.00 0.00 3.18
328 329 5.070180 TGCATGGTTGATCTTCCTTTTTGAA 59.930 36.000 0.00 0.00 0.00 2.69
329 330 4.588106 TGCATGGTTGATCTTCCTTTTTGA 59.412 37.500 0.00 0.00 0.00 2.69
330 331 4.885413 TGCATGGTTGATCTTCCTTTTTG 58.115 39.130 0.00 0.00 0.00 2.44
331 332 5.163322 TGTTGCATGGTTGATCTTCCTTTTT 60.163 36.000 0.00 0.00 0.00 1.94
332 333 4.344679 TGTTGCATGGTTGATCTTCCTTTT 59.655 37.500 0.00 0.00 0.00 2.27
333 334 3.896888 TGTTGCATGGTTGATCTTCCTTT 59.103 39.130 0.00 0.00 0.00 3.11
334 335 3.499338 TGTTGCATGGTTGATCTTCCTT 58.501 40.909 0.00 0.00 0.00 3.36
335 336 3.159213 TGTTGCATGGTTGATCTTCCT 57.841 42.857 0.00 0.00 0.00 3.36
336 337 5.508489 CCATATGTTGCATGGTTGATCTTCC 60.508 44.000 1.24 0.00 38.53 3.46
337 338 5.526115 CCATATGTTGCATGGTTGATCTTC 58.474 41.667 1.24 0.00 38.53 2.87
338 339 5.524971 CCATATGTTGCATGGTTGATCTT 57.475 39.130 1.24 0.00 38.53 2.40
347 348 5.581605 GTTAGGTGAACCATATGTTGCATG 58.418 41.667 1.62 0.00 37.29 4.06
348 349 4.335315 CGTTAGGTGAACCATATGTTGCAT 59.665 41.667 1.62 0.00 37.29 3.96
349 350 3.687212 CGTTAGGTGAACCATATGTTGCA 59.313 43.478 1.62 0.00 37.29 4.08
350 351 3.936453 TCGTTAGGTGAACCATATGTTGC 59.064 43.478 1.62 0.00 37.29 4.17
351 352 5.872617 TCTTCGTTAGGTGAACCATATGTTG 59.127 40.000 1.62 0.00 37.29 3.33
352 353 5.873164 GTCTTCGTTAGGTGAACCATATGTT 59.127 40.000 1.62 0.00 40.81 2.71
353 354 5.046878 TGTCTTCGTTAGGTGAACCATATGT 60.047 40.000 1.62 0.00 38.89 2.29
354 355 5.416083 TGTCTTCGTTAGGTGAACCATATG 58.584 41.667 1.62 0.00 38.89 1.78
355 356 5.670792 TGTCTTCGTTAGGTGAACCATAT 57.329 39.130 1.62 0.00 38.89 1.78
356 357 5.186215 TGATGTCTTCGTTAGGTGAACCATA 59.814 40.000 1.62 0.00 38.89 2.74
357 358 4.020573 TGATGTCTTCGTTAGGTGAACCAT 60.021 41.667 1.62 0.00 38.89 3.55
358 359 3.322541 TGATGTCTTCGTTAGGTGAACCA 59.677 43.478 1.62 0.00 38.89 3.67
359 360 3.921677 TGATGTCTTCGTTAGGTGAACC 58.078 45.455 0.00 0.00 34.21 3.62
360 361 5.637810 TGATTGATGTCTTCGTTAGGTGAAC 59.362 40.000 0.00 0.00 34.41 3.18
361 362 5.789521 TGATTGATGTCTTCGTTAGGTGAA 58.210 37.500 0.00 0.00 0.00 3.18
362 363 5.400066 TGATTGATGTCTTCGTTAGGTGA 57.600 39.130 0.00 0.00 0.00 4.02
363 364 7.770801 TTATGATTGATGTCTTCGTTAGGTG 57.229 36.000 0.00 0.00 0.00 4.00
364 365 7.011482 GCTTTATGATTGATGTCTTCGTTAGGT 59.989 37.037 0.00 0.00 0.00 3.08
365 366 7.011389 TGCTTTATGATTGATGTCTTCGTTAGG 59.989 37.037 0.00 0.00 0.00 2.69
366 367 7.909267 TGCTTTATGATTGATGTCTTCGTTAG 58.091 34.615 0.00 0.00 0.00 2.34
367 368 7.841915 TGCTTTATGATTGATGTCTTCGTTA 57.158 32.000 0.00 0.00 0.00 3.18
368 369 6.741992 TGCTTTATGATTGATGTCTTCGTT 57.258 33.333 0.00 0.00 0.00 3.85
369 370 6.932356 ATGCTTTATGATTGATGTCTTCGT 57.068 33.333 0.00 0.00 0.00 3.85
370 371 9.162793 GTTTATGCTTTATGATTGATGTCTTCG 57.837 33.333 0.00 0.00 0.00 3.79
373 374 9.399797 TCTGTTTATGCTTTATGATTGATGTCT 57.600 29.630 0.00 0.00 0.00 3.41
388 389 9.842775 TCTATGATTGATCTTTCTGTTTATGCT 57.157 29.630 0.00 0.00 0.00 3.79
391 392 9.842775 TGCTCTATGATTGATCTTTCTGTTTAT 57.157 29.630 0.00 0.00 0.00 1.40
392 393 9.842775 ATGCTCTATGATTGATCTTTCTGTTTA 57.157 29.630 0.00 0.00 0.00 2.01
393 394 8.749026 ATGCTCTATGATTGATCTTTCTGTTT 57.251 30.769 0.00 0.00 0.00 2.83
394 395 7.991460 TGATGCTCTATGATTGATCTTTCTGTT 59.009 33.333 0.00 0.00 0.00 3.16
395 396 7.506971 TGATGCTCTATGATTGATCTTTCTGT 58.493 34.615 0.00 0.00 0.00 3.41
396 397 7.964604 TGATGCTCTATGATTGATCTTTCTG 57.035 36.000 0.00 0.00 0.00 3.02
397 398 9.221933 GAATGATGCTCTATGATTGATCTTTCT 57.778 33.333 0.00 0.00 0.00 2.52
398 399 8.452534 GGAATGATGCTCTATGATTGATCTTTC 58.547 37.037 0.00 0.00 0.00 2.62
399 400 7.393796 GGGAATGATGCTCTATGATTGATCTTT 59.606 37.037 0.00 0.00 0.00 2.52
400 401 6.885376 GGGAATGATGCTCTATGATTGATCTT 59.115 38.462 0.00 0.00 0.00 2.40
401 402 6.416415 GGGAATGATGCTCTATGATTGATCT 58.584 40.000 0.00 0.00 0.00 2.75
402 403 5.293814 CGGGAATGATGCTCTATGATTGATC 59.706 44.000 0.00 0.00 0.00 2.92
403 404 5.046087 TCGGGAATGATGCTCTATGATTGAT 60.046 40.000 0.00 0.00 0.00 2.57
404 405 4.284234 TCGGGAATGATGCTCTATGATTGA 59.716 41.667 0.00 0.00 0.00 2.57
405 406 4.391216 GTCGGGAATGATGCTCTATGATTG 59.609 45.833 0.00 0.00 0.00 2.67
406 407 4.285517 AGTCGGGAATGATGCTCTATGATT 59.714 41.667 0.00 0.00 0.00 2.57
407 408 3.837146 AGTCGGGAATGATGCTCTATGAT 59.163 43.478 0.00 0.00 0.00 2.45
408 409 3.234353 AGTCGGGAATGATGCTCTATGA 58.766 45.455 0.00 0.00 0.00 2.15
409 410 3.674528 AGTCGGGAATGATGCTCTATG 57.325 47.619 0.00 0.00 0.00 2.23
410 411 3.007398 GGAAGTCGGGAATGATGCTCTAT 59.993 47.826 0.00 0.00 0.00 1.98
411 412 2.365617 GGAAGTCGGGAATGATGCTCTA 59.634 50.000 0.00 0.00 0.00 2.43
412 413 1.139853 GGAAGTCGGGAATGATGCTCT 59.860 52.381 0.00 0.00 0.00 4.09
413 414 1.134401 TGGAAGTCGGGAATGATGCTC 60.134 52.381 0.00 0.00 0.00 4.26
414 415 0.911769 TGGAAGTCGGGAATGATGCT 59.088 50.000 0.00 0.00 0.00 3.79
415 416 1.972872 ATGGAAGTCGGGAATGATGC 58.027 50.000 0.00 0.00 0.00 3.91
416 417 4.512944 CAGTAATGGAAGTCGGGAATGATG 59.487 45.833 0.00 0.00 0.00 3.07
417 418 4.408921 TCAGTAATGGAAGTCGGGAATGAT 59.591 41.667 0.00 0.00 0.00 2.45
418 419 3.772572 TCAGTAATGGAAGTCGGGAATGA 59.227 43.478 0.00 0.00 0.00 2.57
419 420 4.137116 TCAGTAATGGAAGTCGGGAATG 57.863 45.455 0.00 0.00 0.00 2.67
420 421 4.408921 TCATCAGTAATGGAAGTCGGGAAT 59.591 41.667 0.00 0.00 35.94 3.01
421 422 3.772572 TCATCAGTAATGGAAGTCGGGAA 59.227 43.478 0.00 0.00 35.94 3.97
422 423 3.371034 TCATCAGTAATGGAAGTCGGGA 58.629 45.455 0.00 0.00 35.94 5.14
423 424 3.493350 CCTCATCAGTAATGGAAGTCGGG 60.493 52.174 0.00 0.00 35.94 5.14
424 425 3.384789 TCCTCATCAGTAATGGAAGTCGG 59.615 47.826 0.00 0.00 35.94 4.79
425 426 4.655762 TCCTCATCAGTAATGGAAGTCG 57.344 45.455 0.00 0.00 35.94 4.18
426 427 5.582665 GTGTTCCTCATCAGTAATGGAAGTC 59.417 44.000 0.00 0.00 37.46 3.01
427 428 5.249393 AGTGTTCCTCATCAGTAATGGAAGT 59.751 40.000 0.00 0.00 37.46 3.01
428 429 5.738909 AGTGTTCCTCATCAGTAATGGAAG 58.261 41.667 0.00 0.00 37.46 3.46
429 430 5.762179 AGTGTTCCTCATCAGTAATGGAA 57.238 39.130 0.00 0.00 35.94 3.53
430 431 6.194967 TCTAGTGTTCCTCATCAGTAATGGA 58.805 40.000 0.00 0.00 35.94 3.41
431 432 6.471233 TCTAGTGTTCCTCATCAGTAATGG 57.529 41.667 0.00 0.00 35.94 3.16
432 433 7.720442 TCATCTAGTGTTCCTCATCAGTAATG 58.280 38.462 0.00 0.00 36.65 1.90
433 434 7.782168 TCTCATCTAGTGTTCCTCATCAGTAAT 59.218 37.037 0.00 0.00 0.00 1.89
434 435 7.119387 TCTCATCTAGTGTTCCTCATCAGTAA 58.881 38.462 0.00 0.00 0.00 2.24
435 436 6.663734 TCTCATCTAGTGTTCCTCATCAGTA 58.336 40.000 0.00 0.00 0.00 2.74
536 537 7.242322 AGAAAACAGTAGGTAGGGTAGAAAG 57.758 40.000 0.00 0.00 0.00 2.62
543 544 5.360429 GGAGTCTAGAAAACAGTAGGTAGGG 59.640 48.000 0.00 0.00 0.00 3.53
564 565 9.019656 ACTCATAGCTACTCACAATTATAGGAG 57.980 37.037 0.00 0.00 0.00 3.69
572 573 7.288852 ACCATTCTACTCATAGCTACTCACAAT 59.711 37.037 0.00 0.00 0.00 2.71
682 683 5.780793 AGTCTGGTTACAAAGTAGAGGTGAT 59.219 40.000 0.00 0.00 0.00 3.06
699 700 2.863879 AGGTAGGGGTACATAGTCTGGT 59.136 50.000 0.00 0.00 0.00 4.00
816 818 3.275143 GCTAGATATCGCTCTAGAGGCA 58.725 50.000 21.23 5.59 45.04 4.75
991 993 2.268298 CAATTGCTCCATTGCTTGCTC 58.732 47.619 0.00 0.00 0.00 4.26
1053 1055 8.144478 TCAAATCTCCTATTAAGATCTTCACGG 58.856 37.037 12.24 8.73 32.29 4.94
1110 1112 2.319747 TCCTTCATTGGTAGTAGGGGGA 59.680 50.000 0.00 0.00 0.00 4.81
1282 1284 7.861629 TGATATGTGTAGAGATTTGGTCCTTT 58.138 34.615 0.00 0.00 0.00 3.11
1286 1288 7.946207 TCTCTGATATGTGTAGAGATTTGGTC 58.054 38.462 0.00 0.00 41.33 4.02
1300 1302 3.181492 CGTCACAGTGCTCTCTGATATGT 60.181 47.826 6.02 0.00 38.63 2.29
1307 1309 2.653702 GGCGTCACAGTGCTCTCT 59.346 61.111 0.00 0.00 0.00 3.10
1626 1631 3.348554 TACTACGAGGAGGCCGCCA 62.349 63.158 28.68 5.61 0.00 5.69
1709 1715 4.016444 TCTTCTTTCTGGTTGTTGCAACT 58.984 39.130 28.61 0.00 0.00 3.16
1829 1845 2.421388 GCAGCCCAGTCCACATATACAA 60.421 50.000 0.00 0.00 0.00 2.41
1929 1947 8.754258 ATGTTATACTACTCTACTCCCTCCTA 57.246 38.462 0.00 0.00 0.00 2.94
1987 2005 1.783071 GGGAGTCGAGAAAGGATCCT 58.217 55.000 9.02 9.02 0.00 3.24
2032 2050 4.452455 CGATACAAATAGAACTGGATGCCC 59.548 45.833 0.00 0.00 0.00 5.36
2207 2225 9.519191 AGTGCAATAATAGTCCATAATGCAATA 57.481 29.630 0.00 0.00 43.30 1.90
2208 2226 8.413309 AGTGCAATAATAGTCCATAATGCAAT 57.587 30.769 0.00 0.00 43.30 3.56
2209 2227 7.822161 AGTGCAATAATAGTCCATAATGCAA 57.178 32.000 0.00 0.00 43.30 4.08
2210 2228 7.822161 AAGTGCAATAATAGTCCATAATGCA 57.178 32.000 0.00 0.00 39.95 3.96
2216 2234 8.840321 GTGACATAAAGTGCAATAATAGTCCAT 58.160 33.333 0.00 0.00 0.00 3.41
2217 2235 7.826744 TGTGACATAAAGTGCAATAATAGTCCA 59.173 33.333 0.00 0.00 0.00 4.02
2218 2236 8.208718 TGTGACATAAAGTGCAATAATAGTCC 57.791 34.615 0.00 0.00 0.00 3.85
2227 2245 8.458052 CCATAAGTATTGTGACATAAAGTGCAA 58.542 33.333 0.00 0.00 39.84 4.08
2228 2246 7.415095 GCCATAAGTATTGTGACATAAAGTGCA 60.415 37.037 0.00 0.00 39.84 4.57
2229 2247 6.912591 GCCATAAGTATTGTGACATAAAGTGC 59.087 38.462 0.00 0.00 39.84 4.40
2230 2248 8.213518 AGCCATAAGTATTGTGACATAAAGTG 57.786 34.615 0.00 0.00 39.84 3.16
2235 2253 9.929180 GAGAATAGCCATAAGTATTGTGACATA 57.071 33.333 0.00 0.00 39.84 2.29
2236 2254 8.654997 AGAGAATAGCCATAAGTATTGTGACAT 58.345 33.333 0.00 0.00 39.84 3.06
2237 2255 8.023021 AGAGAATAGCCATAAGTATTGTGACA 57.977 34.615 0.00 0.00 39.84 3.58
2238 2256 8.364142 AGAGAGAATAGCCATAAGTATTGTGAC 58.636 37.037 0.00 0.00 39.84 3.67
2239 2257 8.484214 AGAGAGAATAGCCATAAGTATTGTGA 57.516 34.615 0.00 0.00 39.84 3.58
2250 2268 9.566432 CCTTGTAAAATAAGAGAGAATAGCCAT 57.434 33.333 0.00 0.00 0.00 4.40
2251 2269 8.548877 ACCTTGTAAAATAAGAGAGAATAGCCA 58.451 33.333 0.00 0.00 0.00 4.75
2252 2270 8.966069 ACCTTGTAAAATAAGAGAGAATAGCC 57.034 34.615 0.00 0.00 0.00 3.93
2266 2284 9.816787 TCCCTTCTTATGTAAACCTTGTAAAAT 57.183 29.630 0.00 0.00 0.00 1.82
2267 2285 9.292195 CTCCCTTCTTATGTAAACCTTGTAAAA 57.708 33.333 0.00 0.00 0.00 1.52
2268 2286 8.662255 TCTCCCTTCTTATGTAAACCTTGTAAA 58.338 33.333 0.00 0.00 0.00 2.01
2269 2287 8.209802 TCTCCCTTCTTATGTAAACCTTGTAA 57.790 34.615 0.00 0.00 0.00 2.41
2270 2288 7.801893 TCTCCCTTCTTATGTAAACCTTGTA 57.198 36.000 0.00 0.00 0.00 2.41
2271 2289 6.697641 TCTCCCTTCTTATGTAAACCTTGT 57.302 37.500 0.00 0.00 0.00 3.16
2272 2290 7.415653 GCATTCTCCCTTCTTATGTAAACCTTG 60.416 40.741 0.00 0.00 0.00 3.61
2273 2291 6.603599 GCATTCTCCCTTCTTATGTAAACCTT 59.396 38.462 0.00 0.00 0.00 3.50
2274 2292 6.122964 GCATTCTCCCTTCTTATGTAAACCT 58.877 40.000 0.00 0.00 0.00 3.50
2275 2293 5.299531 GGCATTCTCCCTTCTTATGTAAACC 59.700 44.000 0.00 0.00 0.00 3.27
2276 2294 5.007724 CGGCATTCTCCCTTCTTATGTAAAC 59.992 44.000 0.00 0.00 0.00 2.01
2277 2295 5.104693 TCGGCATTCTCCCTTCTTATGTAAA 60.105 40.000 0.00 0.00 0.00 2.01
2278 2296 4.407621 TCGGCATTCTCCCTTCTTATGTAA 59.592 41.667 0.00 0.00 0.00 2.41
2279 2297 3.964688 TCGGCATTCTCCCTTCTTATGTA 59.035 43.478 0.00 0.00 0.00 2.29
2280 2298 2.771943 TCGGCATTCTCCCTTCTTATGT 59.228 45.455 0.00 0.00 0.00 2.29
2281 2299 3.134458 GTCGGCATTCTCCCTTCTTATG 58.866 50.000 0.00 0.00 0.00 1.90
2282 2300 2.771943 TGTCGGCATTCTCCCTTCTTAT 59.228 45.455 0.00 0.00 0.00 1.73
2283 2301 2.168521 CTGTCGGCATTCTCCCTTCTTA 59.831 50.000 0.00 0.00 0.00 2.10
2284 2302 0.984230 TGTCGGCATTCTCCCTTCTT 59.016 50.000 0.00 0.00 0.00 2.52
2285 2303 0.539051 CTGTCGGCATTCTCCCTTCT 59.461 55.000 0.00 0.00 0.00 2.85
2286 2304 1.092345 GCTGTCGGCATTCTCCCTTC 61.092 60.000 0.00 0.00 41.35 3.46
2287 2305 1.078143 GCTGTCGGCATTCTCCCTT 60.078 57.895 0.00 0.00 41.35 3.95
2288 2306 1.992277 AGCTGTCGGCATTCTCCCT 60.992 57.895 6.39 0.00 44.79 4.20
2289 2307 1.817099 CAGCTGTCGGCATTCTCCC 60.817 63.158 5.25 0.00 44.79 4.30
2290 2308 1.817099 CCAGCTGTCGGCATTCTCC 60.817 63.158 13.81 0.00 44.79 3.71
2291 2309 0.391661 TTCCAGCTGTCGGCATTCTC 60.392 55.000 13.81 0.00 44.79 2.87
2292 2310 0.254178 ATTCCAGCTGTCGGCATTCT 59.746 50.000 13.81 0.00 44.79 2.40
2293 2311 1.064654 GAATTCCAGCTGTCGGCATTC 59.935 52.381 13.81 5.62 44.79 2.67
2294 2312 1.098050 GAATTCCAGCTGTCGGCATT 58.902 50.000 13.81 0.00 44.79 3.56
2295 2313 0.254178 AGAATTCCAGCTGTCGGCAT 59.746 50.000 13.81 0.00 44.79 4.40
2296 2314 0.674581 CAGAATTCCAGCTGTCGGCA 60.675 55.000 13.81 0.00 44.79 5.69
2297 2315 1.372087 CCAGAATTCCAGCTGTCGGC 61.372 60.000 13.81 0.00 42.19 5.54
2298 2316 0.745845 CCCAGAATTCCAGCTGTCGG 60.746 60.000 13.81 8.98 0.00 4.79
2299 2317 1.372087 GCCCAGAATTCCAGCTGTCG 61.372 60.000 13.81 0.00 0.00 4.35
2300 2318 0.034670 AGCCCAGAATTCCAGCTGTC 60.035 55.000 13.81 3.22 31.23 3.51
2301 2319 0.323178 CAGCCCAGAATTCCAGCTGT 60.323 55.000 23.78 0.00 44.59 4.40
2302 2320 2.490165 CAGCCCAGAATTCCAGCTG 58.510 57.895 20.84 20.84 44.31 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.