Multiple sequence alignment - TraesCS6A01G374400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G374400 chr6A 100.000 3122 0 0 1 3122 597283952 597287073 0.000000e+00 5766.0
1 TraesCS6A01G374400 chr6A 90.909 308 27 1 1180 1487 364945158 364945464 2.240000e-111 412.0
2 TraesCS6A01G374400 chr6D 89.279 1110 75 22 86 1185 451665603 451664528 0.000000e+00 1351.0
3 TraesCS6A01G374400 chr6D 85.328 961 81 34 1482 2407 451664529 451663594 0.000000e+00 939.0
4 TraesCS6A01G374400 chr6B 88.671 1121 69 32 85 1185 685635149 685636231 0.000000e+00 1314.0
5 TraesCS6A01G374400 chr6B 84.934 1208 138 25 1938 3119 685636751 685637940 0.000000e+00 1182.0
6 TraesCS6A01G374400 chr6B 86.481 466 38 15 1500 1941 685636242 685636706 3.620000e-134 488.0
7 TraesCS6A01G374400 chr6B 92.333 300 23 0 1181 1480 676535966 676536265 8.000000e-116 427.0
8 TraesCS6A01G374400 chr6B 90.909 308 27 1 1180 1486 366590385 366590078 2.240000e-111 412.0
9 TraesCS6A01G374400 chr2D 95.631 412 18 0 1680 2091 325807961 325808372 0.000000e+00 662.0
10 TraesCS6A01G374400 chr2D 80.968 909 81 43 1518 2387 306257356 306256501 1.220000e-178 636.0
11 TraesCS6A01G374400 chr2B 81.770 565 79 17 630 1185 374242715 374242166 4.750000e-123 451.0
12 TraesCS6A01G374400 chr2B 80.734 218 20 9 1531 1745 374242121 374241923 1.940000e-32 150.0
13 TraesCS6A01G374400 chr5A 92.131 305 24 0 1184 1488 444898174 444897870 6.190000e-117 431.0
14 TraesCS6A01G374400 chr5A 88.333 60 6 1 2506 2564 565747071 565747012 1.550000e-08 71.3
15 TraesCS6A01G374400 chr2A 92.105 304 24 0 1180 1483 474950 475253 2.220000e-116 429.0
16 TraesCS6A01G374400 chr2A 88.690 168 11 5 1936 2098 385299025 385298861 6.830000e-47 198.0
17 TraesCS6A01G374400 chr2A 92.045 88 6 1 1854 1941 385299150 385299064 4.230000e-24 122.0
18 TraesCS6A01G374400 chr4B 92.230 296 22 1 1185 1480 626075716 626075422 4.820000e-113 418.0
19 TraesCS6A01G374400 chr7B 91.919 297 24 0 1184 1480 643379605 643379901 1.730000e-112 416.0
20 TraesCS6A01G374400 chr3A 91.667 300 25 0 1181 1480 444288260 444288559 1.730000e-112 416.0
21 TraesCS6A01G374400 chr3A 90.675 311 27 2 1177 1487 475307629 475307937 2.240000e-111 412.0
22 TraesCS6A01G374400 chr3D 75.610 246 52 8 2497 2737 518129722 518129480 7.080000e-22 115.0
23 TraesCS6A01G374400 chr7A 87.500 72 7 2 2618 2688 730896510 730896580 7.180000e-12 82.4
24 TraesCS6A01G374400 chr7A 85.714 70 7 3 2477 2545 17413840 17413773 1.550000e-08 71.3
25 TraesCS6A01G374400 chr1B 87.500 64 8 0 2521 2584 624715001 624714938 1.200000e-09 75.0
26 TraesCS6A01G374400 chr1B 81.818 88 15 1 2497 2583 138740147 138740060 4.320000e-09 73.1
27 TraesCS6A01G374400 chr4A 79.279 111 17 6 2476 2583 715513750 715513857 4.320000e-09 73.1
28 TraesCS6A01G374400 chr4A 100.000 31 0 0 2554 2584 669793916 669793886 1.210000e-04 58.4
29 TraesCS6A01G374400 chr3B 100.000 32 0 0 2553 2584 301877979 301877948 3.360000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G374400 chr6A 597283952 597287073 3121 False 5766.000000 5766 100.000000 1 3122 1 chr6A.!!$F2 3121
1 TraesCS6A01G374400 chr6D 451663594 451665603 2009 True 1145.000000 1351 87.303500 86 2407 2 chr6D.!!$R1 2321
2 TraesCS6A01G374400 chr6B 685635149 685637940 2791 False 994.666667 1314 86.695333 85 3119 3 chr6B.!!$F2 3034
3 TraesCS6A01G374400 chr2D 306256501 306257356 855 True 636.000000 636 80.968000 1518 2387 1 chr2D.!!$R1 869
4 TraesCS6A01G374400 chr2B 374241923 374242715 792 True 300.500000 451 81.252000 630 1745 2 chr2B.!!$R1 1115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.250252 GCTTAGGCTGATCTGCTCCC 60.250 60.0 21.99 7.72 35.22 4.30 F
1149 1188 0.111253 AAAAGGTCCAGACTGCCCAG 59.889 55.0 10.88 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1502 0.401738 CTGAGGCCTCCTTTGGTTCA 59.598 55.0 29.95 7.85 31.76 3.18 R
2940 3119 0.250381 TACGTGGCGGTTGTTTGGAT 60.250 50.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.188159 TCAGTGCCAATACGGTAATCC 57.812 47.619 0.00 0.00 36.97 3.01
24 25 2.502130 TCAGTGCCAATACGGTAATCCA 59.498 45.455 0.00 0.00 36.97 3.41
25 26 2.612212 CAGTGCCAATACGGTAATCCAC 59.388 50.000 0.00 0.00 36.97 4.02
26 27 2.237643 AGTGCCAATACGGTAATCCACA 59.762 45.455 11.45 0.00 36.97 4.17
27 28 2.612212 GTGCCAATACGGTAATCCACAG 59.388 50.000 0.00 0.00 36.97 3.66
28 29 2.502130 TGCCAATACGGTAATCCACAGA 59.498 45.455 0.00 0.00 36.97 3.41
29 30 3.135712 TGCCAATACGGTAATCCACAGAT 59.864 43.478 0.00 0.00 36.97 2.90
30 31 4.345547 TGCCAATACGGTAATCCACAGATA 59.654 41.667 0.00 0.00 36.97 1.98
31 32 5.163290 TGCCAATACGGTAATCCACAGATAA 60.163 40.000 0.00 0.00 36.97 1.75
32 33 5.408604 GCCAATACGGTAATCCACAGATAAG 59.591 44.000 0.00 0.00 36.97 1.73
33 34 5.408604 CCAATACGGTAATCCACAGATAAGC 59.591 44.000 0.00 0.00 30.42 3.09
34 35 6.223852 CAATACGGTAATCCACAGATAAGCT 58.776 40.000 0.00 0.00 30.42 3.74
35 36 4.755266 ACGGTAATCCACAGATAAGCTT 57.245 40.909 3.48 3.48 30.42 3.74
36 37 5.864418 ACGGTAATCCACAGATAAGCTTA 57.136 39.130 8.99 8.99 30.42 3.09
37 38 5.844004 ACGGTAATCCACAGATAAGCTTAG 58.156 41.667 12.54 0.96 30.42 2.18
38 39 5.221461 ACGGTAATCCACAGATAAGCTTAGG 60.221 44.000 12.54 7.31 30.42 2.69
39 40 4.998033 GGTAATCCACAGATAAGCTTAGGC 59.002 45.833 12.54 6.67 33.24 3.93
50 51 3.304041 GCTTAGGCTGATCTGCTCC 57.696 57.895 21.99 8.39 35.22 4.70
51 52 0.250252 GCTTAGGCTGATCTGCTCCC 60.250 60.000 21.99 7.72 35.22 4.30
52 53 1.422531 CTTAGGCTGATCTGCTCCCT 58.577 55.000 21.99 13.98 0.00 4.20
53 54 2.603021 CTTAGGCTGATCTGCTCCCTA 58.397 52.381 21.99 13.09 0.00 3.53
54 55 3.172339 CTTAGGCTGATCTGCTCCCTAT 58.828 50.000 21.99 6.42 0.00 2.57
55 56 1.350071 AGGCTGATCTGCTCCCTATG 58.650 55.000 21.99 0.00 0.00 2.23
56 57 1.132913 AGGCTGATCTGCTCCCTATGA 60.133 52.381 21.99 0.00 0.00 2.15
57 58 1.696336 GGCTGATCTGCTCCCTATGAA 59.304 52.381 21.99 0.00 0.00 2.57
58 59 2.549778 GGCTGATCTGCTCCCTATGAAC 60.550 54.545 21.99 0.22 0.00 3.18
59 60 2.103771 GCTGATCTGCTCCCTATGAACA 59.896 50.000 16.60 0.00 0.00 3.18
60 61 3.432749 GCTGATCTGCTCCCTATGAACAA 60.433 47.826 16.60 0.00 0.00 2.83
61 62 4.746089 GCTGATCTGCTCCCTATGAACAAT 60.746 45.833 16.60 0.00 0.00 2.71
62 63 5.512060 GCTGATCTGCTCCCTATGAACAATA 60.512 44.000 16.60 0.00 0.00 1.90
63 64 6.499106 TGATCTGCTCCCTATGAACAATAA 57.501 37.500 0.00 0.00 0.00 1.40
64 65 6.899089 TGATCTGCTCCCTATGAACAATAAA 58.101 36.000 0.00 0.00 0.00 1.40
65 66 7.345691 TGATCTGCTCCCTATGAACAATAAAA 58.654 34.615 0.00 0.00 0.00 1.52
66 67 8.000709 TGATCTGCTCCCTATGAACAATAAAAT 58.999 33.333 0.00 0.00 0.00 1.82
67 68 7.807977 TCTGCTCCCTATGAACAATAAAATC 57.192 36.000 0.00 0.00 0.00 2.17
68 69 7.345691 TCTGCTCCCTATGAACAATAAAATCA 58.654 34.615 0.00 0.00 0.00 2.57
69 70 7.833682 TCTGCTCCCTATGAACAATAAAATCAA 59.166 33.333 0.00 0.00 0.00 2.57
70 71 7.999679 TGCTCCCTATGAACAATAAAATCAAG 58.000 34.615 0.00 0.00 0.00 3.02
71 72 7.833682 TGCTCCCTATGAACAATAAAATCAAGA 59.166 33.333 0.00 0.00 0.00 3.02
72 73 8.686334 GCTCCCTATGAACAATAAAATCAAGAA 58.314 33.333 0.00 0.00 0.00 2.52
75 76 9.971922 CCCTATGAACAATAAAATCAAGAATCC 57.028 33.333 0.00 0.00 0.00 3.01
76 77 9.971922 CCTATGAACAATAAAATCAAGAATCCC 57.028 33.333 0.00 0.00 0.00 3.85
171 172 1.801913 CGAGTGCGCTAGGTGTGTC 60.802 63.158 9.73 0.00 0.00 3.67
208 209 6.507900 TCATGATAAGACATTCGAAGACCTC 58.492 40.000 3.35 0.00 34.32 3.85
257 259 3.367992 TTTATGCAACAGGTGTGCAAG 57.632 42.857 2.86 0.00 42.12 4.01
269 271 4.937620 CAGGTGTGCAAGTCATACTATTGT 59.062 41.667 0.00 0.00 37.05 2.71
609 618 8.890410 ATAGCATTGCCATATTCTTTCCTTAT 57.110 30.769 4.70 0.00 0.00 1.73
666 680 9.322773 CTGTTAAAGATAAGATCATCTGAAGCA 57.677 33.333 0.00 0.00 35.42 3.91
667 681 9.102757 TGTTAAAGATAAGATCATCTGAAGCAC 57.897 33.333 0.00 0.00 35.42 4.40
678 692 3.685139 TCTGAAGCACTACTCCCAAAG 57.315 47.619 0.00 0.00 0.00 2.77
810 828 1.005340 GATCAGCCAAGCAAGAGACG 58.995 55.000 0.00 0.00 0.00 4.18
902 921 4.129380 CAAATCCTTGTCACTCACTGTCA 58.871 43.478 0.00 0.00 0.00 3.58
911 930 0.760567 ACTCACTGTCAGCCACTCCA 60.761 55.000 0.00 0.00 0.00 3.86
915 934 0.760567 ACTGTCAGCCACTCCACAGA 60.761 55.000 0.00 0.00 38.90 3.41
942 961 6.322712 TCCCTGTATTTAAACCCATGCATTAC 59.677 38.462 0.00 0.00 0.00 1.89
990 1014 0.319728 GAGAGTGAGCCAGTGAGCAA 59.680 55.000 6.40 0.00 34.23 3.91
991 1015 0.321021 AGAGTGAGCCAGTGAGCAAG 59.679 55.000 6.40 0.00 34.23 4.01
992 1016 1.297456 GAGTGAGCCAGTGAGCAAGC 61.297 60.000 6.40 0.00 34.23 4.01
993 1017 2.357881 TGAGCCAGTGAGCAAGCG 60.358 61.111 6.40 0.00 34.23 4.68
994 1018 2.358003 GAGCCAGTGAGCAAGCGT 60.358 61.111 6.40 0.00 34.23 5.07
995 1019 1.963338 GAGCCAGTGAGCAAGCGTT 60.963 57.895 6.40 0.00 34.23 4.84
996 1020 1.510480 GAGCCAGTGAGCAAGCGTTT 61.510 55.000 6.40 0.00 34.23 3.60
1131 1170 3.354678 GCCAGCAAGAAGGCGAAA 58.645 55.556 0.00 0.00 41.70 3.46
1149 1188 0.111253 AAAAGGTCCAGACTGCCCAG 59.889 55.000 10.88 0.00 0.00 4.45
1155 1194 2.074948 CCAGACTGCCCAGCCCTAT 61.075 63.158 0.00 0.00 0.00 2.57
1185 1224 6.694411 GGTATATACACGCCGTAATATTCAGG 59.306 42.308 14.70 0.00 32.59 3.86
1186 1225 1.578583 ACACGCCGTAATATTCAGGC 58.421 50.000 18.89 18.89 45.67 4.85
1187 1226 0.865769 CACGCCGTAATATTCAGGCC 59.134 55.000 21.40 0.00 46.36 5.19
1188 1227 0.756903 ACGCCGTAATATTCAGGCCT 59.243 50.000 21.40 0.00 46.36 5.19
1189 1228 1.140252 ACGCCGTAATATTCAGGCCTT 59.860 47.619 21.40 10.87 46.36 4.35
1190 1229 1.798813 CGCCGTAATATTCAGGCCTTC 59.201 52.381 21.40 2.91 46.36 3.46
1191 1230 2.548067 CGCCGTAATATTCAGGCCTTCT 60.548 50.000 21.40 0.00 46.36 2.85
1192 1231 3.477530 GCCGTAATATTCAGGCCTTCTT 58.522 45.455 18.36 0.00 43.54 2.52
1193 1232 3.883489 GCCGTAATATTCAGGCCTTCTTT 59.117 43.478 18.36 0.00 43.54 2.52
1194 1233 4.261197 GCCGTAATATTCAGGCCTTCTTTG 60.261 45.833 18.36 0.00 43.54 2.77
1195 1234 4.275936 CCGTAATATTCAGGCCTTCTTTGG 59.724 45.833 0.00 0.00 0.00 3.28
1196 1235 4.881850 CGTAATATTCAGGCCTTCTTTGGT 59.118 41.667 0.00 0.00 0.00 3.67
1197 1236 5.357032 CGTAATATTCAGGCCTTCTTTGGTT 59.643 40.000 0.00 0.00 0.00 3.67
1198 1237 6.127730 CGTAATATTCAGGCCTTCTTTGGTTT 60.128 38.462 0.00 0.00 0.00 3.27
1199 1238 5.665916 ATATTCAGGCCTTCTTTGGTTTG 57.334 39.130 0.00 0.00 0.00 2.93
1200 1239 2.452600 TCAGGCCTTCTTTGGTTTGT 57.547 45.000 0.00 0.00 0.00 2.83
1201 1240 3.586470 TCAGGCCTTCTTTGGTTTGTA 57.414 42.857 0.00 0.00 0.00 2.41
1202 1241 3.486383 TCAGGCCTTCTTTGGTTTGTAG 58.514 45.455 0.00 0.00 0.00 2.74
1203 1242 2.558359 CAGGCCTTCTTTGGTTTGTAGG 59.442 50.000 0.00 0.00 0.00 3.18
1204 1243 2.445525 AGGCCTTCTTTGGTTTGTAGGA 59.554 45.455 0.00 0.00 0.00 2.94
1205 1244 3.117284 AGGCCTTCTTTGGTTTGTAGGAA 60.117 43.478 0.00 0.00 0.00 3.36
1206 1245 3.832490 GGCCTTCTTTGGTTTGTAGGAAT 59.168 43.478 0.00 0.00 0.00 3.01
1207 1246 4.283467 GGCCTTCTTTGGTTTGTAGGAATT 59.717 41.667 0.00 0.00 0.00 2.17
1208 1247 5.221641 GGCCTTCTTTGGTTTGTAGGAATTT 60.222 40.000 0.00 0.00 0.00 1.82
1209 1248 6.288294 GCCTTCTTTGGTTTGTAGGAATTTT 58.712 36.000 0.00 0.00 0.00 1.82
1210 1249 7.438564 GCCTTCTTTGGTTTGTAGGAATTTTA 58.561 34.615 0.00 0.00 0.00 1.52
1211 1250 8.094548 GCCTTCTTTGGTTTGTAGGAATTTTAT 58.905 33.333 0.00 0.00 0.00 1.40
1260 1299 9.278978 TGTAAAGGAAAAATTCATTTAAAGCCC 57.721 29.630 10.41 1.59 44.38 5.19
1261 1300 9.502091 GTAAAGGAAAAATTCATTTAAAGCCCT 57.498 29.630 10.41 0.00 44.38 5.19
1262 1301 8.995027 AAAGGAAAAATTCATTTAAAGCCCTT 57.005 26.923 1.34 0.00 41.31 3.95
1263 1302 8.995027 AAGGAAAAATTCATTTAAAGCCCTTT 57.005 26.923 0.00 0.00 36.63 3.11
1264 1303 8.995027 AGGAAAAATTCATTTAAAGCCCTTTT 57.005 26.923 0.00 0.00 34.23 2.27
1265 1304 8.849168 AGGAAAAATTCATTTAAAGCCCTTTTG 58.151 29.630 0.00 0.00 34.23 2.44
1266 1305 8.629158 GGAAAAATTCATTTAAAGCCCTTTTGT 58.371 29.630 0.00 0.00 34.23 2.83
1269 1308 9.800433 AAAATTCATTTAAAGCCCTTTTGTTTG 57.200 25.926 0.00 0.00 34.23 2.93
1270 1309 8.518430 AATTCATTTAAAGCCCTTTTGTTTGT 57.482 26.923 0.00 0.00 34.23 2.83
1271 1310 9.620259 AATTCATTTAAAGCCCTTTTGTTTGTA 57.380 25.926 0.00 0.00 34.23 2.41
1272 1311 8.655651 TTCATTTAAAGCCCTTTTGTTTGTAG 57.344 30.769 0.00 0.00 34.23 2.74
1273 1312 7.213678 TCATTTAAAGCCCTTTTGTTTGTAGG 58.786 34.615 0.00 0.00 34.23 3.18
1274 1313 6.793505 TTTAAAGCCCTTTTGTTTGTAGGA 57.206 33.333 0.00 0.00 34.23 2.94
1275 1314 6.793505 TTAAAGCCCTTTTGTTTGTAGGAA 57.206 33.333 0.00 0.00 34.23 3.36
1276 1315 5.887214 AAAGCCCTTTTGTTTGTAGGAAT 57.113 34.783 0.00 0.00 0.00 3.01
1277 1316 4.871933 AGCCCTTTTGTTTGTAGGAATG 57.128 40.909 0.00 0.00 0.00 2.67
1278 1317 4.479158 AGCCCTTTTGTTTGTAGGAATGA 58.521 39.130 0.00 0.00 0.00 2.57
1279 1318 4.898861 AGCCCTTTTGTTTGTAGGAATGAA 59.101 37.500 0.00 0.00 0.00 2.57
1280 1319 5.543790 AGCCCTTTTGTTTGTAGGAATGAAT 59.456 36.000 0.00 0.00 0.00 2.57
1281 1320 6.043127 AGCCCTTTTGTTTGTAGGAATGAATT 59.957 34.615 0.00 0.00 0.00 2.17
1282 1321 6.710295 GCCCTTTTGTTTGTAGGAATGAATTT 59.290 34.615 0.00 0.00 0.00 1.82
1283 1322 7.875554 GCCCTTTTGTTTGTAGGAATGAATTTA 59.124 33.333 0.00 0.00 0.00 1.40
1284 1323 9.942850 CCCTTTTGTTTGTAGGAATGAATTTAT 57.057 29.630 0.00 0.00 0.00 1.40
1297 1336 8.040716 GGAATGAATTTATATTCCCACGTAGG 57.959 38.462 14.44 0.00 44.17 3.18
1298 1337 7.881232 GGAATGAATTTATATTCCCACGTAGGA 59.119 37.037 0.00 0.00 44.17 2.94
1299 1338 9.449719 GAATGAATTTATATTCCCACGTAGGAT 57.550 33.333 2.78 0.00 39.56 3.24
1302 1341 8.537016 TGAATTTATATTCCCACGTAGGATAGG 58.463 37.037 2.78 0.00 39.56 2.57
1303 1342 8.674925 AATTTATATTCCCACGTAGGATAGGA 57.325 34.615 2.78 0.00 41.22 2.94
1304 1343 8.674925 ATTTATATTCCCACGTAGGATAGGAA 57.325 34.615 2.78 2.92 41.22 3.36
1305 1344 8.674925 TTTATATTCCCACGTAGGATAGGAAT 57.325 34.615 2.78 9.81 46.45 3.01
1306 1345 6.793505 ATATTCCCACGTAGGATAGGAATC 57.206 41.667 2.78 0.00 44.29 2.52
1307 1346 3.605726 TCCCACGTAGGATAGGAATCA 57.394 47.619 0.00 0.00 41.22 2.57
1308 1347 3.918566 TCCCACGTAGGATAGGAATCAA 58.081 45.455 0.00 0.00 41.22 2.57
1309 1348 4.489737 TCCCACGTAGGATAGGAATCAAT 58.510 43.478 0.00 0.00 41.22 2.57
1310 1349 4.527038 TCCCACGTAGGATAGGAATCAATC 59.473 45.833 0.00 0.00 41.22 2.67
1311 1350 4.322801 CCCACGTAGGATAGGAATCAATCC 60.323 50.000 0.00 5.91 44.67 3.01
1356 1395 9.474313 AAAAACATTAGCCTATACTCAATGGAA 57.526 29.630 0.00 0.00 32.20 3.53
1357 1396 9.474313 AAAACATTAGCCTATACTCAATGGAAA 57.526 29.630 0.00 0.00 32.20 3.13
1358 1397 9.474313 AAACATTAGCCTATACTCAATGGAAAA 57.526 29.630 0.00 0.00 32.20 2.29
1359 1398 9.474313 AACATTAGCCTATACTCAATGGAAAAA 57.526 29.630 0.00 0.00 32.20 1.94
1360 1399 9.646522 ACATTAGCCTATACTCAATGGAAAAAT 57.353 29.630 0.00 0.00 32.20 1.82
1377 1416 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
1378 1417 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
1379 1418 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
1381 1420 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
1382 1421 7.713734 AATTCCTATCCTATGCATCAAATGG 57.286 36.000 0.19 0.08 0.00 3.16
1383 1422 4.592942 TCCTATCCTATGCATCAAATGGC 58.407 43.478 0.19 0.00 0.00 4.40
1384 1423 4.043184 TCCTATCCTATGCATCAAATGGCA 59.957 41.667 0.19 0.00 45.23 4.92
1392 1431 4.380841 TGCATCAAATGGCATCTCTTTC 57.619 40.909 0.00 0.00 34.58 2.62
1393 1432 4.021229 TGCATCAAATGGCATCTCTTTCT 58.979 39.130 0.00 0.00 34.58 2.52
1394 1433 4.097437 TGCATCAAATGGCATCTCTTTCTC 59.903 41.667 0.00 0.00 34.58 2.87
1395 1434 4.338682 GCATCAAATGGCATCTCTTTCTCT 59.661 41.667 0.00 0.00 0.00 3.10
1396 1435 5.530171 GCATCAAATGGCATCTCTTTCTCTA 59.470 40.000 0.00 0.00 0.00 2.43
1397 1436 6.207025 GCATCAAATGGCATCTCTTTCTCTAT 59.793 38.462 0.00 0.00 0.00 1.98
1398 1437 7.389884 GCATCAAATGGCATCTCTTTCTCTATA 59.610 37.037 0.00 0.00 0.00 1.31
1399 1438 8.937884 CATCAAATGGCATCTCTTTCTCTATAG 58.062 37.037 0.00 0.00 0.00 1.31
1400 1439 8.255111 TCAAATGGCATCTCTTTCTCTATAGA 57.745 34.615 0.00 1.69 0.00 1.98
1401 1440 8.708378 TCAAATGGCATCTCTTTCTCTATAGAA 58.292 33.333 0.00 0.00 40.03 2.10
1402 1441 9.334947 CAAATGGCATCTCTTTCTCTATAGAAA 57.665 33.333 0.00 3.55 46.96 2.52
1431 1470 6.862711 ATGCATGTCATCTCACTTCTTATG 57.137 37.500 0.00 0.00 0.00 1.90
1432 1471 5.981174 TGCATGTCATCTCACTTCTTATGA 58.019 37.500 0.00 0.00 0.00 2.15
1433 1472 6.589135 TGCATGTCATCTCACTTCTTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
1434 1473 7.052248 TGCATGTCATCTCACTTCTTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
1435 1474 7.555195 TGCATGTCATCTCACTTCTTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
1436 1475 8.404000 GCATGTCATCTCACTTCTTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
1437 1476 9.932699 CATGTCATCTCACTTCTTATGATTTTC 57.067 33.333 0.00 0.00 31.49 2.29
1438 1477 8.498054 TGTCATCTCACTTCTTATGATTTTCC 57.502 34.615 0.00 0.00 31.49 3.13
1439 1478 8.324306 TGTCATCTCACTTCTTATGATTTTCCT 58.676 33.333 0.00 0.00 31.49 3.36
1440 1479 9.823647 GTCATCTCACTTCTTATGATTTTCCTA 57.176 33.333 0.00 0.00 31.49 2.94
1444 1483 9.838339 TCTCACTTCTTATGATTTTCCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
1445 1484 9.844257 CTCACTTCTTATGATTTTCCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
1468 1507 9.322769 TCCTATAAAGTTCCTATCCTATGAACC 57.677 37.037 0.00 0.00 39.30 3.62
1469 1508 9.101325 CCTATAAAGTTCCTATCCTATGAACCA 57.899 37.037 0.00 0.00 39.30 3.67
1472 1511 9.853177 ATAAAGTTCCTATCCTATGAACCAAAG 57.147 33.333 0.00 0.00 39.30 2.77
1473 1512 6.253946 AGTTCCTATCCTATGAACCAAAGG 57.746 41.667 0.00 0.00 39.30 3.11
1474 1513 5.970640 AGTTCCTATCCTATGAACCAAAGGA 59.029 40.000 0.00 0.00 43.38 3.36
1475 1514 6.100424 AGTTCCTATCCTATGAACCAAAGGAG 59.900 42.308 0.00 0.00 42.53 3.69
1476 1515 4.907875 TCCTATCCTATGAACCAAAGGAGG 59.092 45.833 0.00 0.00 42.53 4.30
1477 1516 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
1478 1517 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
1479 1518 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
1480 1519 2.422093 CCTATGAACCAAAGGAGGCCTC 60.422 54.545 25.59 25.59 30.89 4.70
1481 1520 1.075601 ATGAACCAAAGGAGGCCTCA 58.924 50.000 33.29 11.59 30.89 3.86
1482 1521 0.401738 TGAACCAAAGGAGGCCTCAG 59.598 55.000 33.29 18.95 30.89 3.35
1540 1597 1.971284 CGCATGAATTTGTGTGTGTCG 59.029 47.619 0.00 0.00 0.00 4.35
1543 1600 3.547813 GCATGAATTTGTGTGTGTCGACA 60.548 43.478 15.76 15.76 0.00 4.35
1583 1640 0.106918 TGGTGTTCAAGGAAGGCGTT 60.107 50.000 0.00 0.00 0.00 4.84
1610 1667 1.683441 CGGAAGGGTAGCCAAGGTT 59.317 57.895 14.62 0.00 0.00 3.50
1618 1675 4.224762 AGGGTAGCCAAGGTTAGTCTATC 58.775 47.826 14.62 0.00 0.00 2.08
1668 1749 4.804868 TGTGTTTTCTATACGGGCACTA 57.195 40.909 0.00 0.00 0.00 2.74
1784 1865 0.174617 AACACGCAAACCCAAACCTG 59.825 50.000 0.00 0.00 0.00 4.00
1809 1890 8.462811 TGCAGTTTCTGTCAGTAAAAACAAATA 58.537 29.630 14.62 0.90 34.76 1.40
1852 1933 2.562635 CATGGAGTTCAGCTCTCATGG 58.437 52.381 10.32 0.00 42.54 3.66
2016 2144 8.924511 TTGACCTTCTATTTTCTTGATGACTT 57.075 30.769 0.00 0.00 0.00 3.01
2055 2183 1.239968 GGCTGTTTCTCTGGGCAGTG 61.240 60.000 0.00 0.00 0.00 3.66
2109 2237 7.462571 TCTTCTTGTCTACAATACTAGTGCA 57.537 36.000 5.39 0.00 35.02 4.57
2265 2413 8.737168 AATTACTAATGTTCTAAGCAGCATGA 57.263 30.769 0.00 0.00 39.69 3.07
2310 2458 1.005340 CAAGCGCATGAACTCTCTCC 58.995 55.000 11.47 0.00 0.00 3.71
2311 2459 0.610174 AAGCGCATGAACTCTCTCCA 59.390 50.000 11.47 0.00 0.00 3.86
2337 2485 5.794687 TGTTATCAAGTTCTACAATGGCG 57.205 39.130 0.00 0.00 0.00 5.69
2346 2504 2.984562 TCTACAATGGCGCTTGAATGA 58.015 42.857 15.47 7.68 0.00 2.57
2350 2508 2.098607 ACAATGGCGCTTGAATGATCAG 59.901 45.455 15.47 0.00 36.78 2.90
2407 2568 5.778542 AGAACACCTGGTACTATCACCTAT 58.221 41.667 0.00 0.00 39.50 2.57
2414 2575 7.722728 CACCTGGTACTATCACCTATGTTACTA 59.277 40.741 0.00 0.00 39.50 1.82
2427 2588 7.015292 CACCTATGTTACTAAGGGCATCTCTAA 59.985 40.741 8.09 0.00 34.52 2.10
2433 2594 0.914644 AAGGGCATCTCTAAGCAGCA 59.085 50.000 0.00 0.00 0.00 4.41
2443 2604 1.208052 TCTAAGCAGCAATTCGGCTCT 59.792 47.619 0.00 0.00 45.46 4.09
2444 2605 1.596727 CTAAGCAGCAATTCGGCTCTC 59.403 52.381 0.00 0.00 45.46 3.20
2446 2607 2.103042 GCAGCAATTCGGCTCTCGT 61.103 57.895 0.00 0.00 43.68 4.18
2447 2608 0.806102 GCAGCAATTCGGCTCTCGTA 60.806 55.000 0.00 0.00 43.68 3.43
2458 2619 2.356382 CGGCTCTCGTACTCATCTTCTT 59.644 50.000 0.00 0.00 0.00 2.52
2461 2622 3.547214 GCTCTCGTACTCATCTTCTTCCG 60.547 52.174 0.00 0.00 0.00 4.30
2467 2628 4.973051 CGTACTCATCTTCTTCCGAGAATG 59.027 45.833 0.00 0.00 40.93 2.67
2525 2686 4.009675 GGTATGGAAGATGTTTGAGTGCA 58.990 43.478 0.00 0.00 0.00 4.57
2533 2694 3.693085 AGATGTTTGAGTGCATGATGTCC 59.307 43.478 0.00 0.00 0.00 4.02
2544 2705 3.255395 TGCATGATGTCCGTGTCAAATTT 59.745 39.130 0.00 0.00 34.28 1.82
2549 2710 2.644676 TGTCCGTGTCAAATTTGGTGA 58.355 42.857 17.90 5.37 0.00 4.02
2553 2714 3.634448 TCCGTGTCAAATTTGGTGATGTT 59.366 39.130 17.90 0.00 0.00 2.71
2559 2720 5.105187 TGTCAAATTTGGTGATGTTTGGACA 60.105 36.000 17.90 7.46 40.71 4.02
2575 2736 3.427573 TGGACATTTGAGTAGGTCTCGA 58.572 45.455 0.00 0.00 45.46 4.04
2597 2761 2.094170 AAAAAGGGGGAGGGGTGAGC 62.094 60.000 0.00 0.00 0.00 4.26
2603 2767 1.460699 GGGAGGGGTGAGCAAGTTT 59.539 57.895 0.00 0.00 0.00 2.66
2605 2769 1.613520 GGGAGGGGTGAGCAAGTTTAC 60.614 57.143 0.00 0.00 0.00 2.01
2607 2771 2.570302 GGAGGGGTGAGCAAGTTTACTA 59.430 50.000 0.00 0.00 0.00 1.82
2612 2776 5.044846 AGGGGTGAGCAAGTTTACTATTCAT 60.045 40.000 0.00 0.00 0.00 2.57
2614 2778 5.066505 GGGTGAGCAAGTTTACTATTCATGG 59.933 44.000 0.00 0.00 0.00 3.66
2651 2828 2.629002 TTTTTGCCACGAGCTCCTC 58.371 52.632 8.47 0.00 44.23 3.71
2653 2830 0.036732 TTTTGCCACGAGCTCCTCAT 59.963 50.000 8.47 0.00 44.23 2.90
2660 2837 1.683385 CACGAGCTCCTCATATGTCCA 59.317 52.381 8.47 0.00 0.00 4.02
2663 2840 3.126831 CGAGCTCCTCATATGTCCAAAC 58.873 50.000 8.47 0.00 0.00 2.93
2666 2843 2.609459 GCTCCTCATATGTCCAAACACG 59.391 50.000 1.90 0.00 38.48 4.49
2668 2845 4.697514 CTCCTCATATGTCCAAACACGAT 58.302 43.478 1.90 0.00 38.48 3.73
2686 2863 3.066203 ACGATTAAATTTGCCCGGACATC 59.934 43.478 0.73 0.00 0.00 3.06
2772 2951 4.829064 TTTATTATGTTCATGCTCGGGC 57.171 40.909 0.00 0.00 39.26 6.13
2805 2984 3.797039 TGGGCTCAAATGAGTATTCTCG 58.203 45.455 11.77 0.00 43.85 4.04
2810 2989 4.026475 GCTCAAATGAGTATTCTCGAACCG 60.026 45.833 11.77 0.00 43.85 4.44
2811 2990 3.863424 TCAAATGAGTATTCTCGAACCGC 59.137 43.478 0.00 0.00 43.09 5.68
2813 2992 1.471119 TGAGTATTCTCGAACCGCCT 58.529 50.000 0.00 0.00 43.09 5.52
2814 2993 2.646930 TGAGTATTCTCGAACCGCCTA 58.353 47.619 0.00 0.00 43.09 3.93
2823 3002 3.002656 TCTCGAACCGCCTATAAACGTAG 59.997 47.826 0.00 0.00 0.00 3.51
2824 3003 2.942376 TCGAACCGCCTATAAACGTAGA 59.058 45.455 0.00 0.00 0.00 2.59
2825 3004 3.002656 TCGAACCGCCTATAAACGTAGAG 59.997 47.826 0.00 0.00 0.00 2.43
2829 3008 3.314635 ACCGCCTATAAACGTAGAGACTG 59.685 47.826 0.00 0.00 0.00 3.51
2832 3011 4.556898 CGCCTATAAACGTAGAGACTGCAT 60.557 45.833 0.00 0.00 0.00 3.96
2833 3012 4.681942 GCCTATAAACGTAGAGACTGCATG 59.318 45.833 0.00 0.00 0.00 4.06
2842 3021 0.741221 GAGACTGCATGGTTCGGACC 60.741 60.000 5.70 5.70 46.71 4.46
2876 3055 1.896220 ACACCATGCATCAAACGTCT 58.104 45.000 0.00 0.00 0.00 4.18
2877 3056 1.536766 ACACCATGCATCAAACGTCTG 59.463 47.619 0.00 0.00 0.00 3.51
2878 3057 1.536766 CACCATGCATCAAACGTCTGT 59.463 47.619 0.00 0.00 0.00 3.41
2883 3062 1.202639 TGCATCAAACGTCTGTGGACT 60.203 47.619 0.00 0.00 40.10 3.85
2884 3063 1.873591 GCATCAAACGTCTGTGGACTT 59.126 47.619 0.00 0.00 40.10 3.01
2889 3068 3.382227 TCAAACGTCTGTGGACTTGTCTA 59.618 43.478 0.00 0.00 40.10 2.59
2892 3071 2.891580 ACGTCTGTGGACTTGTCTACAT 59.108 45.455 17.76 3.47 40.10 2.29
2896 3075 4.021894 GTCTGTGGACTTGTCTACATGTCT 60.022 45.833 21.44 0.00 45.13 3.41
2911 3090 3.244911 ACATGTCTGAATTCCCGGAAACT 60.245 43.478 0.73 0.00 0.00 2.66
2912 3091 4.019681 ACATGTCTGAATTCCCGGAAACTA 60.020 41.667 0.73 0.00 0.00 2.24
2913 3092 4.837093 TGTCTGAATTCCCGGAAACTAT 57.163 40.909 0.73 0.00 0.00 2.12
2927 3106 4.698304 CGGAAACTATAAGCAAAGTTGGGA 59.302 41.667 0.00 0.00 36.12 4.37
2928 3107 5.182380 CGGAAACTATAAGCAAAGTTGGGAA 59.818 40.000 0.00 0.00 36.12 3.97
2930 3109 7.090808 GGAAACTATAAGCAAAGTTGGGAAAG 58.909 38.462 0.00 0.00 36.12 2.62
2931 3110 7.255836 GGAAACTATAAGCAAAGTTGGGAAAGT 60.256 37.037 0.00 0.00 36.12 2.66
2940 3119 3.108847 AGTTGGGAAAGTTTGTGGGAA 57.891 42.857 0.00 0.00 0.00 3.97
2943 3122 2.604139 TGGGAAAGTTTGTGGGAATCC 58.396 47.619 0.00 0.00 0.00 3.01
2944 3123 2.091055 TGGGAAAGTTTGTGGGAATCCA 60.091 45.455 0.09 0.00 41.58 3.41
2945 3124 2.969262 GGGAAAGTTTGTGGGAATCCAA 59.031 45.455 0.09 0.00 46.04 3.53
2985 3164 4.326227 ACACCCGGGACCTAGCCA 62.326 66.667 32.02 0.00 0.00 4.75
2993 3172 0.675837 GGGACCTAGCCAAAACCGAC 60.676 60.000 0.00 0.00 0.00 4.79
2995 3174 0.320160 GACCTAGCCAAAACCGACGT 60.320 55.000 0.00 0.00 0.00 4.34
3020 3199 2.299867 GCCCACACATTTGGACAATTCT 59.700 45.455 0.00 0.00 39.24 2.40
3024 3203 5.010516 CCCACACATTTGGACAATTCTACAA 59.989 40.000 0.00 0.00 39.24 2.41
3026 3205 6.808212 CCACACATTTGGACAATTCTACAATC 59.192 38.462 0.00 0.00 39.24 2.67
3032 3211 7.831691 TTTGGACAATTCTACAATCTTTCCA 57.168 32.000 0.00 0.00 0.00 3.53
3033 3212 6.817765 TGGACAATTCTACAATCTTTCCAC 57.182 37.500 0.00 0.00 0.00 4.02
3034 3213 6.303054 TGGACAATTCTACAATCTTTCCACA 58.697 36.000 0.00 0.00 0.00 4.17
3049 3228 1.909302 TCCACATGAAAGTCCTCCCTC 59.091 52.381 0.00 0.00 0.00 4.30
3063 3242 2.307098 CCTCCCTCTCCATGTTGTCTTT 59.693 50.000 0.00 0.00 0.00 2.52
3064 3243 3.341823 CTCCCTCTCCATGTTGTCTTTG 58.658 50.000 0.00 0.00 0.00 2.77
3073 3252 2.542020 TGTTGTCTTTGCTCCGATCA 57.458 45.000 0.00 0.00 0.00 2.92
3075 3254 2.224281 TGTTGTCTTTGCTCCGATCACT 60.224 45.455 0.00 0.00 0.00 3.41
3094 3273 2.043046 CCGCCACCCATCCCAATT 60.043 61.111 0.00 0.00 0.00 2.32
3108 3287 0.891904 CCAATTCCCACCCGTTTCGT 60.892 55.000 0.00 0.00 0.00 3.85
3115 3294 2.028043 ACCCGTTTCGTCGTCCAC 59.972 61.111 0.00 0.00 0.00 4.02
3119 3298 1.945662 CGTTTCGTCGTCCACCGTT 60.946 57.895 0.00 0.00 37.94 4.44
3120 3299 1.561250 GTTTCGTCGTCCACCGTTG 59.439 57.895 0.00 0.00 37.94 4.10
3121 3300 2.239124 TTTCGTCGTCCACCGTTGC 61.239 57.895 0.00 0.00 37.94 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.163290 TGGATTACCGTATTGGCACTGAATA 60.163 40.000 0.00 0.00 43.94 1.75
1 2 4.134563 GGATTACCGTATTGGCACTGAAT 58.865 43.478 0.00 0.00 43.94 2.57
2 3 3.055021 TGGATTACCGTATTGGCACTGAA 60.055 43.478 0.00 0.00 43.94 3.02
3 4 2.502130 TGGATTACCGTATTGGCACTGA 59.498 45.455 0.00 0.00 43.94 3.41
4 5 2.612212 GTGGATTACCGTATTGGCACTG 59.388 50.000 0.00 0.00 43.94 3.66
5 6 2.237643 TGTGGATTACCGTATTGGCACT 59.762 45.455 0.00 0.00 43.94 4.40
6 7 2.612212 CTGTGGATTACCGTATTGGCAC 59.388 50.000 0.00 0.00 43.94 5.01
7 8 2.502130 TCTGTGGATTACCGTATTGGCA 59.498 45.455 0.00 0.00 43.94 4.92
8 9 3.188159 TCTGTGGATTACCGTATTGGC 57.812 47.619 0.00 0.00 43.94 4.52
9 10 5.408604 GCTTATCTGTGGATTACCGTATTGG 59.591 44.000 0.00 0.00 39.42 3.16
10 11 6.223852 AGCTTATCTGTGGATTACCGTATTG 58.776 40.000 0.00 0.00 39.42 1.90
11 12 6.420913 AGCTTATCTGTGGATTACCGTATT 57.579 37.500 0.00 0.00 39.42 1.89
12 13 6.420913 AAGCTTATCTGTGGATTACCGTAT 57.579 37.500 0.00 0.00 39.42 3.06
13 14 5.864418 AAGCTTATCTGTGGATTACCGTA 57.136 39.130 0.00 0.00 39.42 4.02
14 15 4.755266 AAGCTTATCTGTGGATTACCGT 57.245 40.909 0.00 0.00 39.42 4.83
15 16 5.230942 CCTAAGCTTATCTGTGGATTACCG 58.769 45.833 6.64 0.00 39.42 4.02
16 17 4.998033 GCCTAAGCTTATCTGTGGATTACC 59.002 45.833 6.64 0.00 35.50 2.85
32 33 0.250252 GGGAGCAGATCAGCCTAAGC 60.250 60.000 6.46 0.00 40.32 3.09
33 34 1.422531 AGGGAGCAGATCAGCCTAAG 58.577 55.000 6.46 0.00 34.23 2.18
34 35 2.775490 TAGGGAGCAGATCAGCCTAA 57.225 50.000 6.46 0.00 34.23 2.69
35 36 2.110721 TCATAGGGAGCAGATCAGCCTA 59.889 50.000 6.46 2.01 34.23 3.93
36 37 1.132913 TCATAGGGAGCAGATCAGCCT 60.133 52.381 6.46 0.00 34.23 4.58
37 38 1.346062 TCATAGGGAGCAGATCAGCC 58.654 55.000 6.46 0.00 34.23 4.85
38 39 2.103771 TGTTCATAGGGAGCAGATCAGC 59.896 50.000 1.07 1.07 31.16 4.26
39 40 4.412796 TTGTTCATAGGGAGCAGATCAG 57.587 45.455 0.00 0.00 38.04 2.90
40 41 6.499106 TTATTGTTCATAGGGAGCAGATCA 57.501 37.500 0.00 0.00 38.04 2.92
41 42 7.807977 TTTTATTGTTCATAGGGAGCAGATC 57.192 36.000 0.00 0.00 38.04 2.75
42 43 8.000709 TGATTTTATTGTTCATAGGGAGCAGAT 58.999 33.333 0.00 0.00 38.04 2.90
43 44 7.345691 TGATTTTATTGTTCATAGGGAGCAGA 58.654 34.615 0.00 0.00 38.04 4.26
44 45 7.572523 TGATTTTATTGTTCATAGGGAGCAG 57.427 36.000 0.00 0.00 38.04 4.24
45 46 7.833682 TCTTGATTTTATTGTTCATAGGGAGCA 59.166 33.333 0.00 0.00 34.67 4.26
46 47 8.225603 TCTTGATTTTATTGTTCATAGGGAGC 57.774 34.615 0.00 0.00 0.00 4.70
49 50 9.971922 GGATTCTTGATTTTATTGTTCATAGGG 57.028 33.333 0.00 0.00 0.00 3.53
50 51 9.971922 GGGATTCTTGATTTTATTGTTCATAGG 57.028 33.333 0.00 0.00 0.00 2.57
143 144 0.811915 AGCGCACTCGAGTATCTTGT 59.188 50.000 19.57 0.00 38.10 3.16
257 259 8.354011 AGCGTAATTCTCAACAATAGTATGAC 57.646 34.615 0.00 0.00 0.00 3.06
666 680 3.046374 ACAGGTCAACTTTGGGAGTAGT 58.954 45.455 0.00 0.00 37.72 2.73
667 681 3.325135 AGACAGGTCAACTTTGGGAGTAG 59.675 47.826 1.84 0.00 37.72 2.57
678 692 1.048601 TCCCTCACAGACAGGTCAAC 58.951 55.000 1.84 0.00 0.00 3.18
742 760 5.434408 GAATGGATAAGTACCGAGGGTTTT 58.566 41.667 0.00 0.00 37.09 2.43
810 828 2.163818 TGATCACGTGAACAACCCTC 57.836 50.000 24.19 14.89 0.00 4.30
902 921 1.915769 GGGAGTCTGTGGAGTGGCT 60.916 63.158 0.00 0.00 0.00 4.75
915 934 4.264172 TGCATGGGTTTAAATACAGGGAGT 60.264 41.667 0.00 0.00 0.00 3.85
942 961 5.701290 AGTTCAATTTAGTTTCTCTCACGGG 59.299 40.000 0.00 0.00 0.00 5.28
990 1014 2.076863 GAGGCAGACATGTTAAACGCT 58.923 47.619 0.00 0.00 0.00 5.07
991 1015 2.076863 AGAGGCAGACATGTTAAACGC 58.923 47.619 0.00 0.00 0.00 4.84
992 1016 3.067106 ACAGAGGCAGACATGTTAAACG 58.933 45.455 0.00 0.00 0.00 3.60
993 1017 4.065088 TGACAGAGGCAGACATGTTAAAC 58.935 43.478 0.00 0.00 0.00 2.01
994 1018 4.350368 TGACAGAGGCAGACATGTTAAA 57.650 40.909 0.00 0.00 0.00 1.52
995 1019 4.256110 CATGACAGAGGCAGACATGTTAA 58.744 43.478 0.00 0.00 35.46 2.01
996 1020 3.369787 CCATGACAGAGGCAGACATGTTA 60.370 47.826 0.00 0.00 37.42 2.41
1131 1170 1.763770 CTGGGCAGTCTGGACCTTT 59.236 57.895 1.14 0.00 36.67 3.11
1155 1194 0.675083 CGGCGTGTATATACCCACCA 59.325 55.000 10.38 0.00 0.00 4.17
1170 1209 1.798813 GAAGGCCTGAATATTACGGCG 59.201 52.381 5.69 4.80 43.38 6.46
1185 1224 5.468540 AATTCCTACAAACCAAAGAAGGC 57.531 39.130 0.00 0.00 0.00 4.35
1234 1273 9.278978 GGGCTTTAAATGAATTTTTCCTTTACA 57.721 29.630 0.00 0.00 32.14 2.41
1235 1274 9.502091 AGGGCTTTAAATGAATTTTTCCTTTAC 57.498 29.630 0.00 0.00 32.14 2.01
1237 1276 8.995027 AAGGGCTTTAAATGAATTTTTCCTTT 57.005 26.923 0.00 0.00 33.19 3.11
1238 1277 8.995027 AAAGGGCTTTAAATGAATTTTTCCTT 57.005 26.923 0.00 0.00 0.00 3.36
1239 1278 8.849168 CAAAAGGGCTTTAAATGAATTTTTCCT 58.151 29.630 0.00 0.00 31.63 3.36
1240 1279 8.629158 ACAAAAGGGCTTTAAATGAATTTTTCC 58.371 29.630 0.00 0.00 31.63 3.13
1243 1282 9.800433 CAAACAAAAGGGCTTTAAATGAATTTT 57.200 25.926 0.00 0.00 31.63 1.82
1244 1283 8.965819 ACAAACAAAAGGGCTTTAAATGAATTT 58.034 25.926 0.00 0.00 31.63 1.82
1245 1284 8.518430 ACAAACAAAAGGGCTTTAAATGAATT 57.482 26.923 0.00 0.00 31.63 2.17
1246 1285 9.271828 CTACAAACAAAAGGGCTTTAAATGAAT 57.728 29.630 0.00 0.00 31.63 2.57
1247 1286 7.713073 CCTACAAACAAAAGGGCTTTAAATGAA 59.287 33.333 0.00 0.00 31.63 2.57
1248 1287 7.070074 TCCTACAAACAAAAGGGCTTTAAATGA 59.930 33.333 0.00 0.00 31.63 2.57
1249 1288 7.213678 TCCTACAAACAAAAGGGCTTTAAATG 58.786 34.615 0.00 0.00 31.63 2.32
1250 1289 7.368198 TCCTACAAACAAAAGGGCTTTAAAT 57.632 32.000 0.00 0.00 31.63 1.40
1251 1290 6.793505 TCCTACAAACAAAAGGGCTTTAAA 57.206 33.333 0.00 0.00 31.63 1.52
1252 1291 6.793505 TTCCTACAAACAAAAGGGCTTTAA 57.206 33.333 0.00 0.00 31.63 1.52
1253 1292 6.551601 TCATTCCTACAAACAAAAGGGCTTTA 59.448 34.615 0.00 0.00 31.63 1.85
1254 1293 5.365314 TCATTCCTACAAACAAAAGGGCTTT 59.635 36.000 0.00 0.00 0.00 3.51
1255 1294 4.898861 TCATTCCTACAAACAAAAGGGCTT 59.101 37.500 0.00 0.00 0.00 4.35
1256 1295 4.479158 TCATTCCTACAAACAAAAGGGCT 58.521 39.130 0.00 0.00 0.00 5.19
1257 1296 4.864704 TCATTCCTACAAACAAAAGGGC 57.135 40.909 0.00 0.00 0.00 5.19
1258 1297 9.942850 ATAAATTCATTCCTACAAACAAAAGGG 57.057 29.630 0.00 0.00 0.00 3.95
1270 1309 9.938280 CTACGTGGGAATATAAATTCATTCCTA 57.062 33.333 18.59 13.54 46.35 2.94
1271 1310 7.883311 CCTACGTGGGAATATAAATTCATTCCT 59.117 37.037 13.61 7.94 46.35 3.36
1272 1311 7.881232 TCCTACGTGGGAATATAAATTCATTCC 59.119 37.037 19.51 14.01 46.39 3.01
1273 1312 8.842358 TCCTACGTGGGAATATAAATTCATTC 57.158 34.615 19.51 0.00 42.88 2.67
1276 1315 8.537016 CCTATCCTACGTGGGAATATAAATTCA 58.463 37.037 25.46 0.00 42.88 2.57
1277 1316 8.755977 TCCTATCCTACGTGGGAATATAAATTC 58.244 37.037 25.46 0.00 40.77 2.17
1278 1317 8.674925 TCCTATCCTACGTGGGAATATAAATT 57.325 34.615 25.46 8.19 39.02 1.82
1279 1318 8.674925 TTCCTATCCTACGTGGGAATATAAAT 57.325 34.615 25.46 8.96 39.02 1.40
1280 1319 8.674925 ATTCCTATCCTACGTGGGAATATAAA 57.325 34.615 25.46 15.06 42.68 1.40
1281 1320 7.897030 TGATTCCTATCCTACGTGGGAATATAA 59.103 37.037 25.46 16.40 43.95 0.98
1282 1321 7.415908 TGATTCCTATCCTACGTGGGAATATA 58.584 38.462 25.46 11.85 43.95 0.86
1283 1322 6.261435 TGATTCCTATCCTACGTGGGAATAT 58.739 40.000 25.46 11.28 43.95 1.28
1284 1323 5.647230 TGATTCCTATCCTACGTGGGAATA 58.353 41.667 25.46 15.42 43.95 1.75
1285 1324 4.489737 TGATTCCTATCCTACGTGGGAAT 58.510 43.478 25.46 13.19 45.78 3.01
1286 1325 3.918566 TGATTCCTATCCTACGTGGGAA 58.081 45.455 25.46 8.33 39.02 3.97
1287 1326 3.605726 TGATTCCTATCCTACGTGGGA 57.394 47.619 23.93 23.93 39.95 4.37
1288 1327 4.322801 GGATTGATTCCTATCCTACGTGGG 60.323 50.000 12.53 12.53 41.78 4.61
1289 1328 4.822026 GGATTGATTCCTATCCTACGTGG 58.178 47.826 0.00 0.00 41.78 4.94
1301 1340 7.506938 TCCTCCAAAATATGAAGGATTGATTCC 59.493 37.037 0.00 0.00 45.85 3.01
1302 1341 8.469309 TCCTCCAAAATATGAAGGATTGATTC 57.531 34.615 0.00 0.00 31.25 2.52
1303 1342 8.843308 TTCCTCCAAAATATGAAGGATTGATT 57.157 30.769 0.00 0.00 36.09 2.57
1304 1343 8.843308 TTTCCTCCAAAATATGAAGGATTGAT 57.157 30.769 0.00 0.00 36.09 2.57
1305 1344 8.663209 TTTTCCTCCAAAATATGAAGGATTGA 57.337 30.769 0.00 0.00 36.09 2.57
1330 1369 9.474313 TTCCATTGAGTATAGGCTAATGTTTTT 57.526 29.630 0.00 0.00 0.00 1.94
1331 1370 9.474313 TTTCCATTGAGTATAGGCTAATGTTTT 57.526 29.630 0.00 0.00 0.00 2.43
1332 1371 9.474313 TTTTCCATTGAGTATAGGCTAATGTTT 57.526 29.630 0.00 0.00 0.00 2.83
1333 1372 9.474313 TTTTTCCATTGAGTATAGGCTAATGTT 57.526 29.630 0.00 0.00 0.00 2.71
1334 1373 9.646522 ATTTTTCCATTGAGTATAGGCTAATGT 57.353 29.630 0.00 0.00 0.00 2.71
1355 1394 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
1356 1395 8.591072 CCATTTGATGCATAGGATAGGAATTTT 58.409 33.333 0.00 0.00 0.00 1.82
1357 1396 7.310237 GCCATTTGATGCATAGGATAGGAATTT 60.310 37.037 0.00 0.00 0.00 1.82
1358 1397 6.154021 GCCATTTGATGCATAGGATAGGAATT 59.846 38.462 0.00 0.00 0.00 2.17
1359 1398 5.655532 GCCATTTGATGCATAGGATAGGAAT 59.344 40.000 0.00 0.00 0.00 3.01
1360 1399 5.012239 GCCATTTGATGCATAGGATAGGAA 58.988 41.667 0.00 0.00 0.00 3.36
1361 1400 4.043184 TGCCATTTGATGCATAGGATAGGA 59.957 41.667 0.00 0.00 31.31 2.94
1362 1401 4.338012 TGCCATTTGATGCATAGGATAGG 58.662 43.478 0.00 0.00 31.31 2.57
1371 1410 4.021229 AGAAAGAGATGCCATTTGATGCA 58.979 39.130 0.00 0.00 42.52 3.96
1372 1411 4.338682 AGAGAAAGAGATGCCATTTGATGC 59.661 41.667 0.00 0.00 0.00 3.91
1373 1412 7.747155 ATAGAGAAAGAGATGCCATTTGATG 57.253 36.000 0.00 0.00 0.00 3.07
1374 1413 8.878211 TCTATAGAGAAAGAGATGCCATTTGAT 58.122 33.333 0.00 0.00 0.00 2.57
1375 1414 8.255111 TCTATAGAGAAAGAGATGCCATTTGA 57.745 34.615 0.00 0.00 0.00 2.69
1376 1415 8.899427 TTCTATAGAGAAAGAGATGCCATTTG 57.101 34.615 2.02 0.00 38.80 2.32
1408 1447 6.589135 TCATAAGAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
1409 1448 5.981174 TCATAAGAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
1410 1449 7.493743 AATCATAAGAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
1411 1450 9.932699 GAAAATCATAAGAAGTGAGATGACATG 57.067 33.333 0.00 0.00 31.41 3.21
1412 1451 9.118300 GGAAAATCATAAGAAGTGAGATGACAT 57.882 33.333 0.00 0.00 31.41 3.06
1413 1452 8.324306 AGGAAAATCATAAGAAGTGAGATGACA 58.676 33.333 0.00 0.00 31.41 3.58
1414 1453 8.729805 AGGAAAATCATAAGAAGTGAGATGAC 57.270 34.615 0.00 0.00 31.41 3.06
1418 1457 9.838339 GGAATAGGAAAATCATAAGAAGTGAGA 57.162 33.333 0.00 0.00 0.00 3.27
1419 1458 9.844257 AGGAATAGGAAAATCATAAGAAGTGAG 57.156 33.333 0.00 0.00 0.00 3.51
1452 1491 5.369699 CCTCCTTTGGTTCATAGGATAGGAA 59.630 44.000 7.38 0.00 39.94 3.36
1453 1492 4.907875 CCTCCTTTGGTTCATAGGATAGGA 59.092 45.833 7.38 0.00 39.94 2.94
1454 1493 4.505742 GCCTCCTTTGGTTCATAGGATAGG 60.506 50.000 7.38 7.57 39.94 2.57
1455 1494 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
1456 1495 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
1457 1496 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
1458 1497 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
1459 1498 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
1460 1499 2.239654 TGAGGCCTCCTTTGGTTCATAG 59.760 50.000 29.95 0.00 31.76 2.23
1461 1500 2.239654 CTGAGGCCTCCTTTGGTTCATA 59.760 50.000 29.95 5.55 31.76 2.15
1462 1501 1.005215 CTGAGGCCTCCTTTGGTTCAT 59.995 52.381 29.95 0.00 31.76 2.57
1463 1502 0.401738 CTGAGGCCTCCTTTGGTTCA 59.598 55.000 29.95 7.85 31.76 3.18
1464 1503 0.693049 TCTGAGGCCTCCTTTGGTTC 59.307 55.000 29.95 2.80 31.76 3.62
1465 1504 0.695347 CTCTGAGGCCTCCTTTGGTT 59.305 55.000 29.95 0.00 31.76 3.67
1466 1505 0.474660 ACTCTGAGGCCTCCTTTGGT 60.475 55.000 29.95 17.26 31.76 3.67
1467 1506 0.695347 AACTCTGAGGCCTCCTTTGG 59.305 55.000 29.95 16.65 31.76 3.28
1468 1507 1.349026 TCAACTCTGAGGCCTCCTTTG 59.651 52.381 29.95 23.60 31.76 2.77
1469 1508 1.627834 CTCAACTCTGAGGCCTCCTTT 59.372 52.381 29.95 14.08 44.72 3.11
1470 1509 1.274712 CTCAACTCTGAGGCCTCCTT 58.725 55.000 29.95 12.68 44.72 3.36
1471 1510 2.989480 CTCAACTCTGAGGCCTCCT 58.011 57.895 29.95 6.91 44.72 3.69
1497 1536 7.066404 TGCGAAGGTGAAAAATATGCTTGTATA 59.934 33.333 0.00 0.00 0.00 1.47
1498 1537 6.127758 TGCGAAGGTGAAAAATATGCTTGTAT 60.128 34.615 0.00 0.00 0.00 2.29
1509 1548 5.233902 CACAAATTCATGCGAAGGTGAAAAA 59.766 36.000 0.00 0.00 37.82 1.94
1510 1549 4.744137 CACAAATTCATGCGAAGGTGAAAA 59.256 37.500 0.00 0.00 37.82 2.29
1514 1553 2.981805 CACACAAATTCATGCGAAGGTG 59.018 45.455 0.00 0.00 37.51 4.00
1540 1597 1.224592 CCACCAGGCCCTACATGTC 59.775 63.158 0.00 0.00 0.00 3.06
1543 1600 2.308722 CCACCACCAGGCCCTACAT 61.309 63.158 0.00 0.00 39.06 2.29
1583 1640 1.672854 CTACCCTTCCGGACGCATCA 61.673 60.000 1.83 0.00 34.64 3.07
1644 1701 4.822896 AGTGCCCGTATAGAAAACACAAAA 59.177 37.500 0.00 0.00 0.00 2.44
1646 1703 4.010667 AGTGCCCGTATAGAAAACACAA 57.989 40.909 0.00 0.00 0.00 3.33
1647 1704 3.688694 AGTGCCCGTATAGAAAACACA 57.311 42.857 0.00 0.00 0.00 3.72
1648 1705 4.565564 CAGTAGTGCCCGTATAGAAAACAC 59.434 45.833 0.00 0.00 0.00 3.32
1649 1706 4.221262 ACAGTAGTGCCCGTATAGAAAACA 59.779 41.667 0.00 0.00 0.00 2.83
1650 1707 4.565564 CACAGTAGTGCCCGTATAGAAAAC 59.434 45.833 0.00 0.00 39.21 2.43
1652 1709 4.380841 CACAGTAGTGCCCGTATAGAAA 57.619 45.455 0.00 0.00 39.21 2.52
1668 1749 5.350640 GGAAAATTAGTAAGCTACGCACAGT 59.649 40.000 0.00 0.00 0.00 3.55
1683 1764 7.489239 TCCCCTGGTTAAATTGGAAAATTAG 57.511 36.000 0.00 0.00 0.00 1.73
1784 1865 7.755582 ATTTGTTTTTACTGACAGAAACTGC 57.244 32.000 10.08 0.00 34.37 4.40
1809 1890 6.878317 TGGACGATCTCTGAATTTTGTAGAT 58.122 36.000 0.00 0.00 0.00 1.98
1816 1897 4.163078 ACTCCATGGACGATCTCTGAATTT 59.837 41.667 11.44 0.00 0.00 1.82
1852 1933 5.975939 ACGTAGTAAGAACCGAATAAGATGC 59.024 40.000 0.00 0.00 41.94 3.91
2016 2144 7.016914 ACAGCCCTGTCTTTCCTGTATATATA 58.983 38.462 0.00 0.00 40.24 0.86
2019 2147 4.040755 ACAGCCCTGTCTTTCCTGTATAT 58.959 43.478 0.00 0.00 40.24 0.86
2055 2183 2.419324 CAGCAGAATTCCAGCAAGAGTC 59.581 50.000 19.09 0.00 0.00 3.36
2178 2312 7.553334 ACATCCAGTTACATATGTCGTTACTT 58.447 34.615 12.68 0.00 0.00 2.24
2179 2313 7.108841 ACATCCAGTTACATATGTCGTTACT 57.891 36.000 12.68 9.02 0.00 2.24
2265 2413 5.119931 TGAAAACTTAATCACGCTTGCAT 57.880 34.783 0.00 0.00 0.00 3.96
2302 2450 8.160106 AGAACTTGATAACATTTTGGAGAGAGT 58.840 33.333 0.00 0.00 0.00 3.24
2310 2458 8.863049 GCCATTGTAGAACTTGATAACATTTTG 58.137 33.333 0.00 0.00 0.00 2.44
2311 2459 7.754924 CGCCATTGTAGAACTTGATAACATTTT 59.245 33.333 0.00 0.00 0.00 1.82
2380 2541 6.070938 AGGTGATAGTACCAGGTGTTCTTTAC 60.071 42.308 0.76 0.00 43.37 2.01
2407 2568 4.714802 TGCTTAGAGATGCCCTTAGTAACA 59.285 41.667 0.00 0.00 0.00 2.41
2414 2575 0.914644 TGCTGCTTAGAGATGCCCTT 59.085 50.000 0.00 0.00 0.00 3.95
2427 2588 1.812922 CGAGAGCCGAATTGCTGCT 60.813 57.895 0.00 0.00 42.95 4.24
2433 2594 2.952978 AGATGAGTACGAGAGCCGAATT 59.047 45.455 0.00 0.00 41.76 2.17
2443 2604 3.870274 TCTCGGAAGAAGATGAGTACGA 58.130 45.455 0.00 0.00 41.32 3.43
2444 2605 4.617808 TTCTCGGAAGAAGATGAGTACG 57.382 45.455 0.00 0.00 41.32 3.67
2446 2607 6.152831 TGTTCATTCTCGGAAGAAGATGAGTA 59.847 38.462 0.00 0.00 44.53 2.59
2447 2608 5.047021 TGTTCATTCTCGGAAGAAGATGAGT 60.047 40.000 0.00 0.00 44.53 3.41
2458 2619 4.893608 TGAATTGACTGTTCATTCTCGGA 58.106 39.130 11.78 0.00 31.07 4.55
2505 2666 5.499313 TCATGCACTCAAACATCTTCCATA 58.501 37.500 0.00 0.00 0.00 2.74
2512 2673 3.486375 CGGACATCATGCACTCAAACATC 60.486 47.826 0.00 0.00 0.00 3.06
2516 2677 1.805943 CACGGACATCATGCACTCAAA 59.194 47.619 0.00 0.00 0.00 2.69
2518 2679 0.321346 ACACGGACATCATGCACTCA 59.679 50.000 0.00 0.00 0.00 3.41
2525 2686 3.826157 ACCAAATTTGACACGGACATCAT 59.174 39.130 19.86 0.00 0.00 2.45
2533 2694 4.208873 CCAAACATCACCAAATTTGACACG 59.791 41.667 19.86 5.24 34.62 4.49
2544 2705 4.214310 ACTCAAATGTCCAAACATCACCA 58.786 39.130 0.00 0.00 45.48 4.17
2549 2710 5.940470 GAGACCTACTCAAATGTCCAAACAT 59.060 40.000 0.00 0.00 44.86 2.71
2553 2714 3.830178 TCGAGACCTACTCAAATGTCCAA 59.170 43.478 0.00 0.00 45.14 3.53
2583 2747 3.732849 CTTGCTCACCCCTCCCCC 61.733 72.222 0.00 0.00 0.00 5.40
2588 2752 4.288626 TGAATAGTAAACTTGCTCACCCCT 59.711 41.667 0.00 0.00 0.00 4.79
2589 2753 4.585879 TGAATAGTAAACTTGCTCACCCC 58.414 43.478 0.00 0.00 0.00 4.95
2590 2754 5.066505 CCATGAATAGTAAACTTGCTCACCC 59.933 44.000 0.00 0.00 0.00 4.61
2591 2755 5.449177 GCCATGAATAGTAAACTTGCTCACC 60.449 44.000 0.00 0.00 0.00 4.02
2597 2761 6.377327 AATCGGCCATGAATAGTAAACTTG 57.623 37.500 2.24 0.00 0.00 3.16
2603 2767 6.767524 AAACAAAATCGGCCATGAATAGTA 57.232 33.333 2.24 0.00 0.00 1.82
2605 2769 8.647143 AAATAAACAAAATCGGCCATGAATAG 57.353 30.769 2.24 0.00 0.00 1.73
2607 2771 9.612066 AATAAATAAACAAAATCGGCCATGAAT 57.388 25.926 2.24 0.00 0.00 2.57
2644 2821 3.679917 CGTGTTTGGACATATGAGGAGCT 60.680 47.826 10.38 0.00 38.23 4.09
2651 2828 8.320295 GCAAATTTAATCGTGTTTGGACATATG 58.680 33.333 0.00 0.00 38.23 1.78
2653 2830 6.809196 GGCAAATTTAATCGTGTTTGGACATA 59.191 34.615 0.00 0.00 38.23 2.29
2660 2837 3.256136 TCCGGGCAAATTTAATCGTGTTT 59.744 39.130 0.00 0.00 0.00 2.83
2663 2840 2.162608 TGTCCGGGCAAATTTAATCGTG 59.837 45.455 6.10 0.00 0.00 4.35
2666 2843 4.359706 GTGATGTCCGGGCAAATTTAATC 58.640 43.478 15.45 4.39 0.00 1.75
2668 2845 2.162608 CGTGATGTCCGGGCAAATTTAA 59.837 45.455 15.45 0.00 0.00 1.52
2686 2863 4.509970 TCAACCAAGACACTCAAATACGTG 59.490 41.667 0.00 0.00 37.18 4.49
2746 2925 7.224557 GCCCGAGCATGAACATAATAAATTTTT 59.775 33.333 0.00 0.00 39.53 1.94
2747 2926 6.701400 GCCCGAGCATGAACATAATAAATTTT 59.299 34.615 0.00 0.00 39.53 1.82
2750 2929 4.083324 CGCCCGAGCATGAACATAATAAAT 60.083 41.667 0.00 0.00 39.83 1.40
2753 2932 2.412870 CGCCCGAGCATGAACATAATA 58.587 47.619 0.00 0.00 39.83 0.98
2754 2933 1.229428 CGCCCGAGCATGAACATAAT 58.771 50.000 0.00 0.00 39.83 1.28
2755 2934 1.436195 GCGCCCGAGCATGAACATAA 61.436 55.000 0.00 0.00 39.83 1.90
2756 2935 1.887242 GCGCCCGAGCATGAACATA 60.887 57.895 0.00 0.00 39.83 2.29
2757 2936 3.204827 GCGCCCGAGCATGAACAT 61.205 61.111 0.00 0.00 39.83 2.71
2797 2976 4.380974 CGTTTATAGGCGGTTCGAGAATAC 59.619 45.833 0.00 0.00 0.00 1.89
2805 2984 4.036144 AGTCTCTACGTTTATAGGCGGTTC 59.964 45.833 0.00 0.00 0.00 3.62
2810 2989 4.303086 TGCAGTCTCTACGTTTATAGGC 57.697 45.455 0.00 0.00 0.00 3.93
2811 2990 5.221263 ACCATGCAGTCTCTACGTTTATAGG 60.221 44.000 0.00 0.00 0.00 2.57
2813 2992 5.847111 ACCATGCAGTCTCTACGTTTATA 57.153 39.130 0.00 0.00 0.00 0.98
2814 2993 4.737855 ACCATGCAGTCTCTACGTTTAT 57.262 40.909 0.00 0.00 0.00 1.40
2823 3002 0.741221 GGTCCGAACCATGCAGTCTC 60.741 60.000 0.00 0.00 45.68 3.36
2824 3003 1.296715 GGTCCGAACCATGCAGTCT 59.703 57.895 0.00 0.00 45.68 3.24
2825 3004 2.100631 CGGTCCGAACCATGCAGTC 61.101 63.158 4.91 0.00 46.86 3.51
2829 3008 1.063469 CATAAACGGTCCGAACCATGC 59.937 52.381 20.51 0.00 46.86 4.06
2832 3011 1.338011 GGACATAAACGGTCCGAACCA 60.338 52.381 20.51 0.00 46.86 3.67
2833 3012 1.362768 GGACATAAACGGTCCGAACC 58.637 55.000 20.51 6.34 44.80 3.62
2842 3021 4.722194 CATGGTGTTTGAGGACATAAACG 58.278 43.478 0.00 0.00 39.11 3.60
2843 3022 4.022416 TGCATGGTGTTTGAGGACATAAAC 60.022 41.667 0.00 0.00 37.32 2.01
2847 3026 2.291209 TGCATGGTGTTTGAGGACAT 57.709 45.000 0.00 0.00 0.00 3.06
2850 3029 2.583024 TGATGCATGGTGTTTGAGGA 57.417 45.000 2.46 0.00 0.00 3.71
2855 3034 2.622942 AGACGTTTGATGCATGGTGTTT 59.377 40.909 2.46 0.00 0.00 2.83
2858 3037 1.536766 ACAGACGTTTGATGCATGGTG 59.463 47.619 13.73 0.00 0.00 4.17
2876 3055 3.895041 TCAGACATGTAGACAAGTCCACA 59.105 43.478 12.97 4.06 43.36 4.17
2877 3056 4.521130 TCAGACATGTAGACAAGTCCAC 57.479 45.455 12.97 0.00 43.36 4.02
2878 3057 5.745312 ATTCAGACATGTAGACAAGTCCA 57.255 39.130 12.97 0.13 43.36 4.02
2883 3062 4.503910 CGGGAATTCAGACATGTAGACAA 58.496 43.478 7.93 0.00 0.00 3.18
2884 3063 3.118775 CCGGGAATTCAGACATGTAGACA 60.119 47.826 7.93 0.00 0.00 3.41
2889 3068 3.081804 GTTTCCGGGAATTCAGACATGT 58.918 45.455 10.86 0.00 0.00 3.21
2892 3071 4.837093 ATAGTTTCCGGGAATTCAGACA 57.163 40.909 10.86 0.00 0.00 3.41
2896 3075 5.105567 TGCTTATAGTTTCCGGGAATTCA 57.894 39.130 10.86 0.00 0.00 2.57
2911 3090 7.206687 CACAAACTTTCCCAACTTTGCTTATA 58.793 34.615 0.00 0.00 0.00 0.98
2912 3091 6.048509 CACAAACTTTCCCAACTTTGCTTAT 58.951 36.000 0.00 0.00 0.00 1.73
2913 3092 5.415221 CACAAACTTTCCCAACTTTGCTTA 58.585 37.500 0.00 0.00 0.00 3.09
2931 3110 2.101582 CGGTTGTTTGGATTCCCACAAA 59.898 45.455 15.65 1.79 43.41 2.83
2940 3119 0.250381 TACGTGGCGGTTGTTTGGAT 60.250 50.000 0.00 0.00 0.00 3.41
2943 3122 1.572447 CCTACGTGGCGGTTGTTTG 59.428 57.895 0.00 0.00 0.00 2.93
2944 3123 4.052519 CCTACGTGGCGGTTGTTT 57.947 55.556 0.00 0.00 0.00 2.83
2974 3153 0.675837 GTCGGTTTTGGCTAGGTCCC 60.676 60.000 0.00 0.00 0.00 4.46
2975 3154 1.017701 CGTCGGTTTTGGCTAGGTCC 61.018 60.000 0.00 0.00 0.00 4.46
2976 3155 0.320160 ACGTCGGTTTTGGCTAGGTC 60.320 55.000 0.00 0.00 0.00 3.85
2982 3161 2.943653 CTCCACGTCGGTTTTGGC 59.056 61.111 0.00 0.00 35.57 4.52
2985 3164 2.281276 GGGCTCCACGTCGGTTTT 60.281 61.111 0.00 0.00 35.57 2.43
2995 3174 0.539438 GTCCAAATGTGTGGGCTCCA 60.539 55.000 0.00 0.00 40.35 3.86
3006 3185 8.306038 TGGAAAGATTGTAGAATTGTCCAAATG 58.694 33.333 9.19 0.00 29.63 2.32
3007 3186 8.306761 GTGGAAAGATTGTAGAATTGTCCAAAT 58.693 33.333 11.86 0.00 32.29 2.32
3032 3211 2.192263 GGAGAGGGAGGACTTTCATGT 58.808 52.381 0.00 0.00 0.00 3.21
3033 3212 2.191400 TGGAGAGGGAGGACTTTCATG 58.809 52.381 0.00 0.00 0.00 3.07
3034 3213 2.649742 TGGAGAGGGAGGACTTTCAT 57.350 50.000 0.00 0.00 0.00 2.57
3041 3220 1.079490 AGACAACATGGAGAGGGAGGA 59.921 52.381 0.00 0.00 0.00 3.71
3044 3223 2.553028 GCAAAGACAACATGGAGAGGGA 60.553 50.000 0.00 0.00 0.00 4.20
3049 3228 1.466167 CGGAGCAAAGACAACATGGAG 59.534 52.381 0.00 0.00 0.00 3.86
3063 3242 4.819761 GCGGCAGTGATCGGAGCA 62.820 66.667 0.00 0.00 0.00 4.26
3092 3271 1.375013 CGACGAAACGGGTGGGAAT 60.375 57.895 0.00 0.00 0.00 3.01
3094 3273 3.211564 GACGACGAAACGGGTGGGA 62.212 63.158 0.00 0.00 37.61 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.