Multiple sequence alignment - TraesCS6A01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G374300 chr6A 100.000 2192 0 0 1 2192 597252995 597250804 0.000000e+00 4048
1 TraesCS6A01G374300 chr3A 98.702 1926 22 1 1 1923 495104762 495102837 0.000000e+00 3415
2 TraesCS6A01G374300 chr3B 98.651 1928 18 4 1 1923 92296734 92294810 0.000000e+00 3410
3 TraesCS6A01G374300 chr3B 98.494 1926 25 2 1 1923 6010768 6008844 0.000000e+00 3393
4 TraesCS6A01G374300 chr2B 98.598 1926 24 1 1 1923 234541162 234539237 0.000000e+00 3404
5 TraesCS6A01G374300 chrUn 98.544 1923 24 2 1 1920 217907666 217909587 0.000000e+00 3393
6 TraesCS6A01G374300 chrUn 99.631 271 1 0 1922 2192 86512567 86512837 1.510000e-136 496
7 TraesCS6A01G374300 chrUn 99.262 271 2 0 1922 2192 189400755 189400485 7.030000e-135 490
8 TraesCS6A01G374300 chrUn 99.262 271 2 0 1922 2192 264056224 264056494 7.030000e-135 490
9 TraesCS6A01G374300 chrUn 99.262 271 2 0 1922 2192 266526154 266526424 7.030000e-135 490
10 TraesCS6A01G374300 chrUn 99.262 271 2 0 1922 2192 282367251 282367521 7.030000e-135 490
11 TraesCS6A01G374300 chr1A 98.492 1923 25 2 1 1920 278521192 278523113 0.000000e+00 3387
12 TraesCS6A01G374300 chr1B 98.390 1926 27 2 1 1923 619195333 619193409 0.000000e+00 3382
13 TraesCS6A01G374300 chr6D 98.336 1923 29 1 1 1920 108485206 108487128 0.000000e+00 3371
14 TraesCS6A01G374300 chr6D 99.262 271 2 0 1922 2192 124525797 124525527 7.030000e-135 490
15 TraesCS6A01G374300 chr4B 98.183 1926 31 2 1 1923 495479714 495477790 0.000000e+00 3360
16 TraesCS6A01G374300 chr4A 99.631 271 1 0 1922 2192 67579309 67579579 1.510000e-136 496
17 TraesCS6A01G374300 chr7D 99.262 271 2 0 1922 2192 203508265 203507995 7.030000e-135 490
18 TraesCS6A01G374300 chr5D 99.262 271 2 0 1922 2192 324417636 324417366 7.030000e-135 490


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G374300 chr6A 597250804 597252995 2191 True 4048 4048 100.000 1 2192 1 chr6A.!!$R1 2191
1 TraesCS6A01G374300 chr3A 495102837 495104762 1925 True 3415 3415 98.702 1 1923 1 chr3A.!!$R1 1922
2 TraesCS6A01G374300 chr3B 92294810 92296734 1924 True 3410 3410 98.651 1 1923 1 chr3B.!!$R2 1922
3 TraesCS6A01G374300 chr3B 6008844 6010768 1924 True 3393 3393 98.494 1 1923 1 chr3B.!!$R1 1922
4 TraesCS6A01G374300 chr2B 234539237 234541162 1925 True 3404 3404 98.598 1 1923 1 chr2B.!!$R1 1922
5 TraesCS6A01G374300 chrUn 217907666 217909587 1921 False 3393 3393 98.544 1 1920 1 chrUn.!!$F2 1919
6 TraesCS6A01G374300 chr1A 278521192 278523113 1921 False 3387 3387 98.492 1 1920 1 chr1A.!!$F1 1919
7 TraesCS6A01G374300 chr1B 619193409 619195333 1924 True 3382 3382 98.390 1 1923 1 chr1B.!!$R1 1922
8 TraesCS6A01G374300 chr6D 108485206 108487128 1922 False 3371 3371 98.336 1 1920 1 chr6D.!!$F1 1919
9 TraesCS6A01G374300 chr4B 495477790 495479714 1924 True 3360 3360 98.183 1 1923 1 chr4B.!!$R1 1922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 891 0.537188 TCTCCTGGATCAAAGCGGAC 59.463 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2051 0.034574 TGGTGGTCTTATTGGCGCAT 60.035 50.0 10.83 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
569 572 2.933492 GCGAATGTGTGTAAGCCCAGTA 60.933 50.000 0.00 0.00 0.00 2.74
885 891 0.537188 TCTCCTGGATCAAAGCGGAC 59.463 55.000 0.00 0.00 0.00 4.79
1012 1018 2.777692 CCCTCCCTTATGTTTAGGAGCA 59.222 50.000 0.00 0.00 43.86 4.26
1843 1851 3.119245 CGGTTCTTCGGAGGAATCAACTA 60.119 47.826 12.78 0.00 30.79 2.24
1920 1929 2.191128 AGACATCAAGGTTGTGGCTC 57.809 50.000 0.00 0.00 0.00 4.70
1923 1932 1.081892 CATCAAGGTTGTGGCTCGAG 58.918 55.000 8.45 8.45 0.00 4.04
1924 1933 0.036010 ATCAAGGTTGTGGCTCGAGG 60.036 55.000 15.58 0.00 0.00 4.63
1925 1934 1.071471 CAAGGTTGTGGCTCGAGGT 59.929 57.895 15.58 0.00 0.00 3.85
1926 1935 0.951040 CAAGGTTGTGGCTCGAGGTC 60.951 60.000 15.58 0.00 0.00 3.85
1927 1936 2.047179 GGTTGTGGCTCGAGGTCC 60.047 66.667 15.58 8.41 0.00 4.46
1928 1937 2.584391 GGTTGTGGCTCGAGGTCCT 61.584 63.158 15.58 0.00 0.00 3.85
1929 1938 1.371558 GTTGTGGCTCGAGGTCCTT 59.628 57.895 15.58 0.00 0.00 3.36
1930 1939 0.606604 GTTGTGGCTCGAGGTCCTTA 59.393 55.000 15.58 0.00 0.00 2.69
1931 1940 0.895530 TTGTGGCTCGAGGTCCTTAG 59.104 55.000 15.58 0.00 0.00 2.18
1932 1941 0.251653 TGTGGCTCGAGGTCCTTAGT 60.252 55.000 15.58 0.00 0.00 2.24
1933 1942 0.896226 GTGGCTCGAGGTCCTTAGTT 59.104 55.000 15.58 0.00 0.00 2.24
1934 1943 1.275573 GTGGCTCGAGGTCCTTAGTTT 59.724 52.381 15.58 0.00 0.00 2.66
1935 1944 2.494870 GTGGCTCGAGGTCCTTAGTTTA 59.505 50.000 15.58 0.00 0.00 2.01
1936 1945 2.758979 TGGCTCGAGGTCCTTAGTTTAG 59.241 50.000 15.58 0.00 0.00 1.85
1937 1946 2.759535 GGCTCGAGGTCCTTAGTTTAGT 59.240 50.000 15.58 0.00 0.00 2.24
1938 1947 3.181488 GGCTCGAGGTCCTTAGTTTAGTC 60.181 52.174 15.58 0.00 0.00 2.59
1939 1948 3.442977 GCTCGAGGTCCTTAGTTTAGTCA 59.557 47.826 15.58 0.00 0.00 3.41
1940 1949 4.082354 GCTCGAGGTCCTTAGTTTAGTCAA 60.082 45.833 15.58 0.00 0.00 3.18
1941 1950 5.640189 TCGAGGTCCTTAGTTTAGTCAAG 57.360 43.478 0.00 0.00 0.00 3.02
1942 1951 5.075493 TCGAGGTCCTTAGTTTAGTCAAGT 58.925 41.667 0.00 0.00 0.00 3.16
1943 1952 6.240894 TCGAGGTCCTTAGTTTAGTCAAGTA 58.759 40.000 0.00 0.00 0.00 2.24
1944 1953 6.373774 TCGAGGTCCTTAGTTTAGTCAAGTAG 59.626 42.308 0.00 0.00 0.00 2.57
1945 1954 6.404513 CGAGGTCCTTAGTTTAGTCAAGTAGG 60.405 46.154 0.00 0.00 0.00 3.18
1946 1955 5.187381 AGGTCCTTAGTTTAGTCAAGTAGGC 59.813 44.000 0.00 0.00 0.00 3.93
1947 1956 5.100943 GTCCTTAGTTTAGTCAAGTAGGCG 58.899 45.833 0.00 0.00 0.00 5.52
1948 1957 5.012239 TCCTTAGTTTAGTCAAGTAGGCGA 58.988 41.667 0.00 0.00 0.00 5.54
1949 1958 5.125097 TCCTTAGTTTAGTCAAGTAGGCGAG 59.875 44.000 0.00 0.00 0.00 5.03
1950 1959 3.870633 AGTTTAGTCAAGTAGGCGAGG 57.129 47.619 0.00 0.00 0.00 4.63
1951 1960 2.496470 AGTTTAGTCAAGTAGGCGAGGG 59.504 50.000 0.00 0.00 0.00 4.30
1952 1961 0.822164 TTAGTCAAGTAGGCGAGGGC 59.178 55.000 0.00 0.00 38.90 5.19
1953 1962 0.323999 TAGTCAAGTAGGCGAGGGCA 60.324 55.000 0.00 0.00 42.47 5.36
1954 1963 0.978146 AGTCAAGTAGGCGAGGGCAT 60.978 55.000 0.00 0.00 42.47 4.40
1955 1964 0.107654 GTCAAGTAGGCGAGGGCATT 60.108 55.000 0.00 0.00 42.47 3.56
1956 1965 0.618458 TCAAGTAGGCGAGGGCATTT 59.382 50.000 0.00 0.00 42.47 2.32
1957 1966 1.017387 CAAGTAGGCGAGGGCATTTC 58.983 55.000 0.00 0.00 42.47 2.17
1958 1967 0.107165 AAGTAGGCGAGGGCATTTCC 60.107 55.000 0.00 0.00 42.47 3.13
1959 1968 1.223487 GTAGGCGAGGGCATTTCCA 59.777 57.895 0.00 0.00 42.47 3.53
1960 1969 0.179018 GTAGGCGAGGGCATTTCCAT 60.179 55.000 0.00 0.00 42.47 3.41
1961 1970 0.108585 TAGGCGAGGGCATTTCCATC 59.891 55.000 0.00 0.00 42.06 3.51
1964 1973 3.025619 GAGGGCATTTCCATCGCG 58.974 61.111 0.00 0.00 35.76 5.87
1965 1974 1.523711 GAGGGCATTTCCATCGCGA 60.524 57.895 13.09 13.09 35.76 5.87
1966 1975 1.077787 AGGGCATTTCCATCGCGAA 60.078 52.632 15.24 0.00 36.21 4.70
1967 1976 1.097547 AGGGCATTTCCATCGCGAAG 61.098 55.000 15.24 9.17 36.21 3.79
1968 1977 1.356624 GGCATTTCCATCGCGAAGG 59.643 57.895 23.92 23.92 34.01 3.46
1969 1978 1.095228 GGCATTTCCATCGCGAAGGA 61.095 55.000 27.92 27.92 34.01 3.36
1970 1979 0.947244 GCATTTCCATCGCGAAGGAT 59.053 50.000 31.32 16.67 33.10 3.24
1971 1980 1.334869 GCATTTCCATCGCGAAGGATT 59.665 47.619 31.32 19.80 33.10 3.01
1972 1981 2.603173 GCATTTCCATCGCGAAGGATTC 60.603 50.000 31.32 17.15 43.09 2.52
1987 1996 2.134789 GATTCAATCCAGCCACAGGT 57.865 50.000 0.00 0.00 0.00 4.00
1988 1997 2.450476 GATTCAATCCAGCCACAGGTT 58.550 47.619 0.00 0.00 0.00 3.50
1989 1998 1.909700 TTCAATCCAGCCACAGGTTC 58.090 50.000 0.00 0.00 0.00 3.62
1990 1999 0.038166 TCAATCCAGCCACAGGTTCC 59.962 55.000 0.00 0.00 0.00 3.62
1991 2000 0.967380 CAATCCAGCCACAGGTTCCC 60.967 60.000 0.00 0.00 0.00 3.97
1992 2001 2.155197 AATCCAGCCACAGGTTCCCC 62.155 60.000 0.00 0.00 0.00 4.81
1993 2002 3.260100 CCAGCCACAGGTTCCCCT 61.260 66.667 0.00 0.00 44.02 4.79
1994 2003 1.923395 CCAGCCACAGGTTCCCCTA 60.923 63.158 0.00 0.00 39.89 3.53
1995 2004 1.299976 CAGCCACAGGTTCCCCTAC 59.700 63.158 0.00 0.00 39.89 3.18
1996 2005 2.267961 GCCACAGGTTCCCCTACG 59.732 66.667 0.00 0.00 39.89 3.51
1997 2006 2.288025 GCCACAGGTTCCCCTACGA 61.288 63.158 0.00 0.00 39.89 3.43
1998 2007 1.595357 CCACAGGTTCCCCTACGAC 59.405 63.158 0.00 0.00 39.89 4.34
1999 2008 0.903454 CCACAGGTTCCCCTACGACT 60.903 60.000 0.00 0.00 39.89 4.18
2000 2009 1.617804 CCACAGGTTCCCCTACGACTA 60.618 57.143 0.00 0.00 39.89 2.59
2001 2010 1.475682 CACAGGTTCCCCTACGACTAC 59.524 57.143 0.00 0.00 39.89 2.73
2002 2011 1.109609 CAGGTTCCCCTACGACTACC 58.890 60.000 0.00 0.00 39.89 3.18
2003 2012 1.006020 AGGTTCCCCTACGACTACCT 58.994 55.000 0.00 0.00 40.19 3.08
2004 2013 1.360507 AGGTTCCCCTACGACTACCTT 59.639 52.381 0.00 0.00 40.19 3.50
2005 2014 1.479730 GGTTCCCCTACGACTACCTTG 59.520 57.143 0.00 0.00 0.00 3.61
2006 2015 2.174360 GTTCCCCTACGACTACCTTGT 58.826 52.381 0.00 0.00 0.00 3.16
2007 2016 2.564504 GTTCCCCTACGACTACCTTGTT 59.435 50.000 0.00 0.00 0.00 2.83
2008 2017 3.737559 TCCCCTACGACTACCTTGTTA 57.262 47.619 0.00 0.00 0.00 2.41
2009 2018 3.356290 TCCCCTACGACTACCTTGTTAC 58.644 50.000 0.00 0.00 0.00 2.50
2010 2019 2.098117 CCCCTACGACTACCTTGTTACG 59.902 54.545 0.00 0.00 0.00 3.18
2011 2020 3.009723 CCCTACGACTACCTTGTTACGA 58.990 50.000 0.00 0.00 0.00 3.43
2012 2021 3.181506 CCCTACGACTACCTTGTTACGAC 60.182 52.174 0.00 0.00 0.00 4.34
2013 2022 3.686726 CCTACGACTACCTTGTTACGACT 59.313 47.826 0.00 0.00 0.00 4.18
2014 2023 4.154918 CCTACGACTACCTTGTTACGACTT 59.845 45.833 0.00 0.00 0.00 3.01
2015 2024 4.152607 ACGACTACCTTGTTACGACTTC 57.847 45.455 0.00 0.00 0.00 3.01
2016 2025 3.565482 ACGACTACCTTGTTACGACTTCA 59.435 43.478 0.00 0.00 0.00 3.02
2017 2026 3.910767 CGACTACCTTGTTACGACTTCAC 59.089 47.826 0.00 0.00 0.00 3.18
2018 2027 4.233005 GACTACCTTGTTACGACTTCACC 58.767 47.826 0.00 0.00 0.00 4.02
2019 2028 2.538512 ACCTTGTTACGACTTCACCC 57.461 50.000 0.00 0.00 0.00 4.61
2020 2029 1.071228 ACCTTGTTACGACTTCACCCC 59.929 52.381 0.00 0.00 0.00 4.95
2021 2030 1.071071 CCTTGTTACGACTTCACCCCA 59.929 52.381 0.00 0.00 0.00 4.96
2022 2031 2.413837 CTTGTTACGACTTCACCCCAG 58.586 52.381 0.00 0.00 0.00 4.45
2023 2032 1.416243 TGTTACGACTTCACCCCAGT 58.584 50.000 0.00 0.00 0.00 4.00
2024 2033 1.342174 TGTTACGACTTCACCCCAGTC 59.658 52.381 0.00 0.00 37.84 3.51
2028 2037 3.516578 GACTTCACCCCAGTCGAAG 57.483 57.895 0.00 0.00 41.53 3.79
2029 2038 0.966920 GACTTCACCCCAGTCGAAGA 59.033 55.000 5.45 0.00 38.75 2.87
2040 2049 3.307906 TCGAAGACCCCACCGTGG 61.308 66.667 10.95 10.95 37.25 4.94
2041 2050 3.622826 CGAAGACCCCACCGTGGT 61.623 66.667 16.55 0.00 39.32 4.16
2042 2051 2.277591 CGAAGACCCCACCGTGGTA 61.278 63.158 16.55 0.00 35.85 3.25
2043 2052 1.610554 CGAAGACCCCACCGTGGTAT 61.611 60.000 16.55 3.65 35.85 2.73
2044 2053 0.107848 GAAGACCCCACCGTGGTATG 60.108 60.000 16.55 7.07 35.85 2.39
2045 2054 2.124860 GACCCCACCGTGGTATGC 60.125 66.667 16.55 0.00 35.85 3.14
2046 2055 4.090588 ACCCCACCGTGGTATGCG 62.091 66.667 16.55 0.42 35.17 4.73
2049 2058 4.769063 CCACCGTGGTATGCGCCA 62.769 66.667 9.64 0.00 35.93 5.69
2050 2059 2.744318 CACCGTGGTATGCGCCAA 60.744 61.111 4.18 0.00 40.68 4.52
2051 2060 2.112198 CACCGTGGTATGCGCCAAT 61.112 57.895 4.18 0.00 40.68 3.16
2052 2061 0.812014 CACCGTGGTATGCGCCAATA 60.812 55.000 4.18 0.00 40.68 1.90
2053 2062 0.107606 ACCGTGGTATGCGCCAATAA 60.108 50.000 4.18 0.00 40.68 1.40
2054 2063 0.586319 CCGTGGTATGCGCCAATAAG 59.414 55.000 4.18 0.00 40.68 1.73
2055 2064 1.577468 CGTGGTATGCGCCAATAAGA 58.423 50.000 4.18 0.00 40.68 2.10
2056 2065 1.260561 CGTGGTATGCGCCAATAAGAC 59.739 52.381 4.18 0.00 40.68 3.01
2057 2066 1.602377 GTGGTATGCGCCAATAAGACC 59.398 52.381 4.18 2.73 40.68 3.85
2058 2067 1.210722 TGGTATGCGCCAATAAGACCA 59.789 47.619 4.18 5.93 35.25 4.02
2059 2068 1.602377 GGTATGCGCCAATAAGACCAC 59.398 52.381 4.18 0.00 0.00 4.16
2060 2069 1.602377 GTATGCGCCAATAAGACCACC 59.398 52.381 4.18 0.00 0.00 4.61
2061 2070 0.034574 ATGCGCCAATAAGACCACCA 60.035 50.000 4.18 0.00 0.00 4.17
2062 2071 0.250945 TGCGCCAATAAGACCACCAA 60.251 50.000 4.18 0.00 0.00 3.67
2063 2072 0.885196 GCGCCAATAAGACCACCAAA 59.115 50.000 0.00 0.00 0.00 3.28
2064 2073 1.135402 GCGCCAATAAGACCACCAAAG 60.135 52.381 0.00 0.00 0.00 2.77
2065 2074 1.472480 CGCCAATAAGACCACCAAAGG 59.528 52.381 0.00 0.00 0.00 3.11
2066 2075 1.204704 GCCAATAAGACCACCAAAGGC 59.795 52.381 0.00 0.00 0.00 4.35
2067 2076 1.824852 CCAATAAGACCACCAAAGGCC 59.175 52.381 0.00 0.00 0.00 5.19
2068 2077 2.557452 CCAATAAGACCACCAAAGGCCT 60.557 50.000 0.00 0.00 0.00 5.19
2069 2078 3.165071 CAATAAGACCACCAAAGGCCTT 58.835 45.455 13.78 13.78 0.00 4.35
2070 2079 3.542969 ATAAGACCACCAAAGGCCTTT 57.457 42.857 25.47 25.47 0.00 3.11
2071 2080 1.413118 AAGACCACCAAAGGCCTTTG 58.587 50.000 40.08 40.08 46.93 2.77
2072 2081 0.261696 AGACCACCAAAGGCCTTTGT 59.738 50.000 41.82 31.20 46.19 2.83
2073 2082 0.389025 GACCACCAAAGGCCTTTGTG 59.611 55.000 41.82 36.50 46.19 3.33
2074 2083 1.048160 ACCACCAAAGGCCTTTGTGG 61.048 55.000 41.60 41.60 46.19 4.17
2084 2093 3.725754 CCTTTGTGGCACTAGTGGT 57.274 52.632 23.95 0.00 0.00 4.16
2085 2094 2.851263 CCTTTGTGGCACTAGTGGTA 57.149 50.000 23.95 0.00 0.00 3.25
2086 2095 2.423577 CCTTTGTGGCACTAGTGGTAC 58.576 52.381 23.95 7.67 0.00 3.34
2087 2096 2.224426 CCTTTGTGGCACTAGTGGTACA 60.224 50.000 23.95 11.18 0.00 2.90
2101 2110 2.334977 TGGTACACAGAAGTCATGGGT 58.665 47.619 0.00 0.00 38.10 4.51
2102 2111 2.038426 TGGTACACAGAAGTCATGGGTG 59.962 50.000 0.00 0.00 34.49 4.61
2103 2112 2.301870 GGTACACAGAAGTCATGGGTGA 59.698 50.000 0.00 0.00 34.49 4.02
2104 2113 3.055094 GGTACACAGAAGTCATGGGTGAT 60.055 47.826 0.00 0.00 34.49 3.06
2105 2114 3.340814 ACACAGAAGTCATGGGTGATC 57.659 47.619 0.00 0.00 36.60 2.92
2106 2115 2.639347 ACACAGAAGTCATGGGTGATCA 59.361 45.455 0.00 0.00 36.60 2.92
2107 2116 3.265221 ACACAGAAGTCATGGGTGATCAT 59.735 43.478 0.00 0.00 36.60 2.45
2108 2117 4.263639 ACACAGAAGTCATGGGTGATCATT 60.264 41.667 0.00 0.00 36.60 2.57
2109 2118 4.095932 CACAGAAGTCATGGGTGATCATTG 59.904 45.833 0.00 0.00 36.60 2.82
2110 2119 3.630769 CAGAAGTCATGGGTGATCATTGG 59.369 47.826 0.00 0.00 36.60 3.16
2111 2120 3.267812 AGAAGTCATGGGTGATCATTGGT 59.732 43.478 0.00 0.00 36.60 3.67
2112 2121 3.287867 AGTCATGGGTGATCATTGGTC 57.712 47.619 0.00 0.00 36.60 4.02
2113 2122 2.092212 AGTCATGGGTGATCATTGGTCC 60.092 50.000 0.00 0.00 36.60 4.46
2114 2123 1.134128 TCATGGGTGATCATTGGTCCG 60.134 52.381 0.00 0.00 0.00 4.79
2115 2124 1.134128 CATGGGTGATCATTGGTCCGA 60.134 52.381 0.00 0.00 0.00 4.55
2116 2125 1.212375 TGGGTGATCATTGGTCCGAT 58.788 50.000 0.00 0.00 0.00 4.18
2117 2126 1.134128 TGGGTGATCATTGGTCCGATG 60.134 52.381 12.50 12.50 0.00 3.84
2118 2127 0.947244 GGTGATCATTGGTCCGATGC 59.053 55.000 13.75 2.46 0.00 3.91
2119 2128 1.475751 GGTGATCATTGGTCCGATGCT 60.476 52.381 13.75 4.68 0.00 3.79
2120 2129 2.292267 GTGATCATTGGTCCGATGCTT 58.708 47.619 13.75 4.42 0.00 3.91
2121 2130 2.289002 GTGATCATTGGTCCGATGCTTC 59.711 50.000 13.75 12.74 0.00 3.86
2122 2131 1.528586 GATCATTGGTCCGATGCTTCG 59.471 52.381 13.75 14.61 45.08 3.79
2130 2139 2.399611 CGATGCTTCGGGCGAAAC 59.600 61.111 13.82 0.00 45.43 2.78
2131 2140 2.791927 GATGCTTCGGGCGAAACC 59.208 61.111 0.00 0.00 45.43 3.27
2132 2141 2.033448 ATGCTTCGGGCGAAACCA 59.967 55.556 0.00 0.00 45.43 3.67
2133 2142 1.582610 GATGCTTCGGGCGAAACCAA 61.583 55.000 0.00 0.00 45.43 3.67
2134 2143 0.965363 ATGCTTCGGGCGAAACCAAT 60.965 50.000 0.00 0.00 45.43 3.16
2135 2144 1.175983 TGCTTCGGGCGAAACCAATT 61.176 50.000 0.00 0.00 45.43 2.32
2136 2145 0.456142 GCTTCGGGCGAAACCAATTC 60.456 55.000 0.00 0.00 42.05 2.17
2137 2146 0.170339 CTTCGGGCGAAACCAATTCC 59.830 55.000 0.00 0.00 42.05 3.01
2138 2147 1.245376 TTCGGGCGAAACCAATTCCC 61.245 55.000 0.00 0.00 42.05 3.97
2139 2148 1.974343 CGGGCGAAACCAATTCCCA 60.974 57.895 0.00 0.00 42.05 4.37
2140 2149 1.890174 GGGCGAAACCAATTCCCAG 59.110 57.895 0.00 0.00 42.05 4.45
2141 2150 1.604147 GGGCGAAACCAATTCCCAGG 61.604 60.000 0.00 0.00 42.05 4.45
2142 2151 1.604147 GGCGAAACCAATTCCCAGGG 61.604 60.000 0.00 0.00 38.86 4.45
2143 2152 0.898326 GCGAAACCAATTCCCAGGGT 60.898 55.000 5.01 0.00 34.34 4.34
2144 2153 0.887933 CGAAACCAATTCCCAGGGTG 59.112 55.000 5.01 0.00 34.51 4.61
2145 2154 1.821666 CGAAACCAATTCCCAGGGTGT 60.822 52.381 5.01 0.00 34.51 4.16
2146 2155 1.618343 GAAACCAATTCCCAGGGTGTG 59.382 52.381 5.01 2.06 34.51 3.82
2147 2156 0.856982 AACCAATTCCCAGGGTGTGA 59.143 50.000 5.01 0.00 34.51 3.58
2148 2157 0.112412 ACCAATTCCCAGGGTGTGAC 59.888 55.000 5.01 0.00 32.60 3.67
2149 2158 0.960364 CCAATTCCCAGGGTGTGACG 60.960 60.000 5.01 0.00 0.00 4.35
2150 2159 0.960364 CAATTCCCAGGGTGTGACGG 60.960 60.000 5.01 0.00 0.00 4.79
2151 2160 2.137177 AATTCCCAGGGTGTGACGGG 62.137 60.000 5.01 0.00 40.32 5.28
2159 2168 4.903010 GTGTGACGGGCGGTGTGT 62.903 66.667 1.11 0.00 0.00 3.72
2160 2169 3.225061 TGTGACGGGCGGTGTGTA 61.225 61.111 1.11 0.00 0.00 2.90
2161 2170 2.735857 GTGACGGGCGGTGTGTAC 60.736 66.667 1.11 0.00 0.00 2.90
2162 2171 3.225061 TGACGGGCGGTGTGTACA 61.225 61.111 1.11 0.00 0.00 2.90
2163 2172 2.431942 GACGGGCGGTGTGTACAG 60.432 66.667 1.11 0.00 0.00 2.74
2164 2173 3.927163 GACGGGCGGTGTGTACAGG 62.927 68.421 1.11 0.00 0.00 4.00
2165 2174 4.752879 CGGGCGGTGTGTACAGGG 62.753 72.222 0.00 0.00 0.00 4.45
2169 2178 4.752879 CGGTGTGTACAGGGCCCG 62.753 72.222 18.44 14.39 0.00 6.13
2170 2179 4.404098 GGTGTGTACAGGGCCCGG 62.404 72.222 21.67 21.67 0.00 5.73
2171 2180 4.404098 GTGTGTACAGGGCCCGGG 62.404 72.222 26.70 19.09 0.00 5.73
2172 2181 4.966274 TGTGTACAGGGCCCGGGT 62.966 66.667 26.70 24.75 0.00 5.28
2173 2182 2.684655 GTGTACAGGGCCCGGGTA 60.685 66.667 26.70 23.69 0.00 3.69
2174 2183 2.684655 TGTACAGGGCCCGGGTAC 60.685 66.667 34.80 34.80 38.25 3.34
2175 2184 2.684655 GTACAGGGCCCGGGTACA 60.685 66.667 35.66 17.56 37.81 2.90
2176 2185 2.068213 GTACAGGGCCCGGGTACAT 61.068 63.158 35.66 17.82 37.81 2.29
2177 2186 0.760189 GTACAGGGCCCGGGTACATA 60.760 60.000 35.66 16.93 37.81 2.29
2178 2187 0.191563 TACAGGGCCCGGGTACATAT 59.808 55.000 26.70 5.04 0.00 1.78
2179 2188 0.696485 ACAGGGCCCGGGTACATATT 60.696 55.000 26.70 0.00 0.00 1.28
2180 2189 0.036306 CAGGGCCCGGGTACATATTC 59.964 60.000 24.63 1.42 0.00 1.75
2181 2190 0.400815 AGGGCCCGGGTACATATTCA 60.401 55.000 24.63 0.00 0.00 2.57
2182 2191 0.250597 GGGCCCGGGTACATATTCAC 60.251 60.000 24.63 0.00 0.00 3.18
2183 2192 0.250597 GGCCCGGGTACATATTCACC 60.251 60.000 24.63 6.52 0.00 4.02
2184 2193 0.601841 GCCCGGGTACATATTCACCG 60.602 60.000 24.63 0.00 43.89 4.94
2185 2194 0.601841 CCCGGGTACATATTCACCGC 60.602 60.000 14.18 0.00 42.99 5.68
2186 2195 0.942410 CCGGGTACATATTCACCGCG 60.942 60.000 0.00 0.00 42.99 6.46
2187 2196 0.942410 CGGGTACATATTCACCGCGG 60.942 60.000 26.86 26.86 37.93 6.46
2188 2197 1.226030 GGGTACATATTCACCGCGGC 61.226 60.000 28.58 3.96 35.53 6.53
2189 2198 0.531090 GGTACATATTCACCGCGGCA 60.531 55.000 28.58 9.72 0.00 5.69
2190 2199 1.508632 GTACATATTCACCGCGGCAT 58.491 50.000 28.58 17.61 0.00 4.40
2191 2200 1.194547 GTACATATTCACCGCGGCATG 59.805 52.381 28.58 21.49 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
885 891 1.425428 GACGAATTTGGCGAGCTGG 59.575 57.895 0.00 0.00 0.00 4.85
1012 1018 0.250513 GTCGTTCTTGGGCAGATCCT 59.749 55.000 0.00 0.00 34.39 3.24
1843 1851 5.504853 GGATCAATGAAGAAGGGAGAAGTT 58.495 41.667 0.00 0.00 0.00 2.66
1920 1929 5.388408 ACTTGACTAAACTAAGGACCTCG 57.612 43.478 0.00 0.00 0.00 4.63
1923 1932 5.417811 GCCTACTTGACTAAACTAAGGACC 58.582 45.833 0.00 0.00 0.00 4.46
1924 1933 5.100943 CGCCTACTTGACTAAACTAAGGAC 58.899 45.833 0.00 0.00 0.00 3.85
1925 1934 5.012239 TCGCCTACTTGACTAAACTAAGGA 58.988 41.667 0.00 0.00 0.00 3.36
1926 1935 5.320549 TCGCCTACTTGACTAAACTAAGG 57.679 43.478 0.00 0.00 0.00 2.69
1927 1936 5.341617 CCTCGCCTACTTGACTAAACTAAG 58.658 45.833 0.00 0.00 0.00 2.18
1928 1937 4.159135 CCCTCGCCTACTTGACTAAACTAA 59.841 45.833 0.00 0.00 0.00 2.24
1929 1938 3.698040 CCCTCGCCTACTTGACTAAACTA 59.302 47.826 0.00 0.00 0.00 2.24
1930 1939 2.496470 CCCTCGCCTACTTGACTAAACT 59.504 50.000 0.00 0.00 0.00 2.66
1931 1940 2.889852 CCCTCGCCTACTTGACTAAAC 58.110 52.381 0.00 0.00 0.00 2.01
1932 1941 1.206371 GCCCTCGCCTACTTGACTAAA 59.794 52.381 0.00 0.00 0.00 1.85
1933 1942 0.822164 GCCCTCGCCTACTTGACTAA 59.178 55.000 0.00 0.00 0.00 2.24
1934 1943 0.323999 TGCCCTCGCCTACTTGACTA 60.324 55.000 0.00 0.00 0.00 2.59
1935 1944 0.978146 ATGCCCTCGCCTACTTGACT 60.978 55.000 0.00 0.00 0.00 3.41
1936 1945 0.107654 AATGCCCTCGCCTACTTGAC 60.108 55.000 0.00 0.00 0.00 3.18
1937 1946 0.618458 AAATGCCCTCGCCTACTTGA 59.382 50.000 0.00 0.00 0.00 3.02
1938 1947 1.017387 GAAATGCCCTCGCCTACTTG 58.983 55.000 0.00 0.00 0.00 3.16
1939 1948 0.107165 GGAAATGCCCTCGCCTACTT 60.107 55.000 0.00 0.00 0.00 2.24
1940 1949 1.271840 TGGAAATGCCCTCGCCTACT 61.272 55.000 0.00 0.00 34.97 2.57
1941 1950 0.179018 ATGGAAATGCCCTCGCCTAC 60.179 55.000 0.00 0.00 34.97 3.18
1942 1951 0.108585 GATGGAAATGCCCTCGCCTA 59.891 55.000 0.00 0.00 34.97 3.93
1943 1952 1.152881 GATGGAAATGCCCTCGCCT 60.153 57.895 0.00 0.00 34.97 5.52
1944 1953 2.546494 CGATGGAAATGCCCTCGCC 61.546 63.158 0.00 0.00 45.50 5.54
1945 1954 3.025619 CGATGGAAATGCCCTCGC 58.974 61.111 0.00 0.00 45.50 5.03
1947 1956 1.095228 TTCGCGATGGAAATGCCCTC 61.095 55.000 10.88 0.00 34.97 4.30
1948 1957 1.077787 TTCGCGATGGAAATGCCCT 60.078 52.632 10.88 0.00 34.97 5.19
1949 1958 1.356624 CTTCGCGATGGAAATGCCC 59.643 57.895 10.88 0.00 34.97 5.36
1950 1959 1.095228 TCCTTCGCGATGGAAATGCC 61.095 55.000 34.04 0.00 32.45 4.40
1951 1960 0.947244 ATCCTTCGCGATGGAAATGC 59.053 50.000 37.65 0.00 38.03 3.56
1952 1961 2.613595 TGAATCCTTCGCGATGGAAATG 59.386 45.455 37.65 16.15 38.03 2.32
1953 1962 2.917933 TGAATCCTTCGCGATGGAAAT 58.082 42.857 37.65 30.30 38.03 2.17
1954 1963 2.394930 TGAATCCTTCGCGATGGAAA 57.605 45.000 37.65 26.11 38.03 3.13
1955 1964 2.394930 TTGAATCCTTCGCGATGGAA 57.605 45.000 37.65 23.99 38.03 3.53
1956 1965 2.483876 GATTGAATCCTTCGCGATGGA 58.516 47.619 36.63 36.63 38.74 3.41
1957 1966 1.532868 GGATTGAATCCTTCGCGATGG 59.467 52.381 29.80 29.80 46.19 3.51
1958 1967 2.957576 GGATTGAATCCTTCGCGATG 57.042 50.000 16.79 13.11 46.19 3.84
1968 1977 2.134789 ACCTGTGGCTGGATTGAATC 57.865 50.000 0.00 0.00 0.00 2.52
1969 1978 2.450476 GAACCTGTGGCTGGATTGAAT 58.550 47.619 0.00 0.00 0.00 2.57
1970 1979 1.547675 GGAACCTGTGGCTGGATTGAA 60.548 52.381 0.00 0.00 0.00 2.69
1971 1980 0.038166 GGAACCTGTGGCTGGATTGA 59.962 55.000 0.00 0.00 0.00 2.57
1972 1981 2.571548 GGAACCTGTGGCTGGATTG 58.428 57.895 0.00 0.00 0.00 2.67
1986 1995 2.174360 ACAAGGTAGTCGTAGGGGAAC 58.826 52.381 0.00 0.00 0.00 3.62
1987 1996 2.610438 ACAAGGTAGTCGTAGGGGAA 57.390 50.000 0.00 0.00 0.00 3.97
1988 1997 2.610438 AACAAGGTAGTCGTAGGGGA 57.390 50.000 0.00 0.00 0.00 4.81
1989 1998 2.098117 CGTAACAAGGTAGTCGTAGGGG 59.902 54.545 0.00 0.00 0.00 4.79
1990 1999 3.009723 TCGTAACAAGGTAGTCGTAGGG 58.990 50.000 0.00 0.00 0.00 3.53
1991 2000 3.686726 AGTCGTAACAAGGTAGTCGTAGG 59.313 47.826 0.00 0.00 0.00 3.18
1992 2001 4.935885 AGTCGTAACAAGGTAGTCGTAG 57.064 45.455 0.00 0.00 0.00 3.51
1993 2002 4.754618 TGAAGTCGTAACAAGGTAGTCGTA 59.245 41.667 0.00 0.00 0.00 3.43
1994 2003 3.565482 TGAAGTCGTAACAAGGTAGTCGT 59.435 43.478 0.00 0.00 0.00 4.34
1995 2004 3.910767 GTGAAGTCGTAACAAGGTAGTCG 59.089 47.826 0.00 0.00 0.00 4.18
1996 2005 4.233005 GGTGAAGTCGTAACAAGGTAGTC 58.767 47.826 0.00 0.00 0.00 2.59
1997 2006 3.006217 GGGTGAAGTCGTAACAAGGTAGT 59.994 47.826 0.00 0.00 0.00 2.73
1998 2007 3.582780 GGGTGAAGTCGTAACAAGGTAG 58.417 50.000 0.00 0.00 0.00 3.18
1999 2008 2.299867 GGGGTGAAGTCGTAACAAGGTA 59.700 50.000 0.00 0.00 0.00 3.08
2000 2009 1.071228 GGGGTGAAGTCGTAACAAGGT 59.929 52.381 0.00 0.00 0.00 3.50
2001 2010 1.071071 TGGGGTGAAGTCGTAACAAGG 59.929 52.381 0.00 0.00 0.00 3.61
2002 2011 2.224209 ACTGGGGTGAAGTCGTAACAAG 60.224 50.000 0.00 0.00 0.00 3.16
2003 2012 1.764134 ACTGGGGTGAAGTCGTAACAA 59.236 47.619 0.00 0.00 0.00 2.83
2004 2013 1.342174 GACTGGGGTGAAGTCGTAACA 59.658 52.381 0.00 0.00 35.12 2.41
2005 2014 2.075979 GACTGGGGTGAAGTCGTAAC 57.924 55.000 0.00 0.00 35.12 2.50
2010 2019 0.966920 TCTTCGACTGGGGTGAAGTC 59.033 55.000 0.00 0.00 39.97 3.01
2011 2020 0.680061 GTCTTCGACTGGGGTGAAGT 59.320 55.000 0.00 0.00 39.97 3.01
2012 2021 0.037232 GGTCTTCGACTGGGGTGAAG 60.037 60.000 0.00 0.00 40.30 3.02
2013 2022 1.477685 GGGTCTTCGACTGGGGTGAA 61.478 60.000 0.00 0.00 32.47 3.18
2014 2023 1.911766 GGGTCTTCGACTGGGGTGA 60.912 63.158 0.00 0.00 32.47 4.02
2015 2024 2.663196 GGGTCTTCGACTGGGGTG 59.337 66.667 0.00 0.00 32.47 4.61
2016 2025 2.606826 GGGGTCTTCGACTGGGGT 60.607 66.667 0.00 0.00 32.47 4.95
2017 2026 2.606519 TGGGGTCTTCGACTGGGG 60.607 66.667 0.00 0.00 32.47 4.96
2018 2027 2.663196 GTGGGGTCTTCGACTGGG 59.337 66.667 0.00 0.00 32.47 4.45
2019 2028 2.663196 GGTGGGGTCTTCGACTGG 59.337 66.667 0.00 0.00 32.47 4.00
2020 2029 2.261671 CGGTGGGGTCTTCGACTG 59.738 66.667 0.00 0.00 32.47 3.51
2021 2030 2.203596 ACGGTGGGGTCTTCGACT 60.204 61.111 0.00 0.00 32.47 4.18
2022 2031 2.048503 CACGGTGGGGTCTTCGAC 60.049 66.667 0.00 0.00 0.00 4.20
2023 2032 2.711883 TACCACGGTGGGGTCTTCGA 62.712 60.000 29.44 3.13 43.37 3.71
2024 2033 1.610554 ATACCACGGTGGGGTCTTCG 61.611 60.000 29.44 3.78 43.37 3.79
2025 2034 0.107848 CATACCACGGTGGGGTCTTC 60.108 60.000 29.44 0.00 43.37 2.87
2026 2035 1.988015 CATACCACGGTGGGGTCTT 59.012 57.895 29.44 11.91 43.37 3.01
2027 2036 2.666098 GCATACCACGGTGGGGTCT 61.666 63.158 29.44 12.28 43.37 3.85
2028 2037 2.124860 GCATACCACGGTGGGGTC 60.125 66.667 29.44 12.63 43.37 4.46
2029 2038 4.090588 CGCATACCACGGTGGGGT 62.091 66.667 29.44 15.47 43.37 4.95
2032 2041 4.769063 TGGCGCATACCACGGTGG 62.769 66.667 25.21 25.21 45.02 4.61
2033 2042 0.812014 TATTGGCGCATACCACGGTG 60.812 55.000 10.83 0.00 40.19 4.94
2034 2043 0.107606 TTATTGGCGCATACCACGGT 60.108 50.000 10.83 0.00 40.19 4.83
2035 2044 0.586319 CTTATTGGCGCATACCACGG 59.414 55.000 10.83 0.00 40.19 4.94
2036 2045 1.260561 GTCTTATTGGCGCATACCACG 59.739 52.381 10.83 0.00 40.19 4.94
2037 2046 1.602377 GGTCTTATTGGCGCATACCAC 59.398 52.381 10.83 0.00 40.19 4.16
2038 2047 1.210722 TGGTCTTATTGGCGCATACCA 59.789 47.619 10.83 8.59 38.16 3.25
2039 2048 1.602377 GTGGTCTTATTGGCGCATACC 59.398 52.381 10.83 5.91 0.00 2.73
2040 2049 1.602377 GGTGGTCTTATTGGCGCATAC 59.398 52.381 10.83 0.00 0.00 2.39
2041 2050 1.210722 TGGTGGTCTTATTGGCGCATA 59.789 47.619 10.83 0.00 0.00 3.14
2042 2051 0.034574 TGGTGGTCTTATTGGCGCAT 60.035 50.000 10.83 0.00 0.00 4.73
2043 2052 0.250945 TTGGTGGTCTTATTGGCGCA 60.251 50.000 10.83 0.00 0.00 6.09
2044 2053 0.885196 TTTGGTGGTCTTATTGGCGC 59.115 50.000 0.00 0.00 0.00 6.53
2045 2054 1.472480 CCTTTGGTGGTCTTATTGGCG 59.528 52.381 0.00 0.00 0.00 5.69
2046 2055 1.204704 GCCTTTGGTGGTCTTATTGGC 59.795 52.381 0.00 0.00 0.00 4.52
2047 2056 1.824852 GGCCTTTGGTGGTCTTATTGG 59.175 52.381 0.00 0.00 0.00 3.16
2048 2057 2.807676 AGGCCTTTGGTGGTCTTATTG 58.192 47.619 0.00 0.00 39.31 1.90
2053 2062 3.131850 CAAAGGCCTTTGGTGGTCT 57.868 52.632 39.69 12.98 45.14 3.85
2066 2075 2.224426 TGTACCACTAGTGCCACAAAGG 60.224 50.000 17.86 3.68 41.84 3.11
2067 2076 2.806244 GTGTACCACTAGTGCCACAAAG 59.194 50.000 22.15 9.58 33.89 2.77
2068 2077 2.170817 TGTGTACCACTAGTGCCACAAA 59.829 45.455 25.92 19.51 38.17 2.83
2069 2078 1.763545 TGTGTACCACTAGTGCCACAA 59.236 47.619 25.92 15.86 38.17 3.33
2070 2079 1.343142 CTGTGTACCACTAGTGCCACA 59.657 52.381 26.12 26.12 38.55 4.17
2071 2080 1.616865 TCTGTGTACCACTAGTGCCAC 59.383 52.381 17.86 20.42 35.11 5.01
2072 2081 2.003937 TCTGTGTACCACTAGTGCCA 57.996 50.000 17.86 10.29 35.11 4.92
2073 2082 2.299297 ACTTCTGTGTACCACTAGTGCC 59.701 50.000 17.86 7.80 35.11 5.01
2074 2083 3.005472 TGACTTCTGTGTACCACTAGTGC 59.995 47.826 17.86 4.70 35.11 4.40
2075 2084 4.848562 TGACTTCTGTGTACCACTAGTG 57.151 45.455 16.34 16.34 35.11 2.74
2076 2085 4.220821 CCATGACTTCTGTGTACCACTAGT 59.779 45.833 0.00 0.00 35.11 2.57
2077 2086 4.382040 CCCATGACTTCTGTGTACCACTAG 60.382 50.000 0.00 0.00 35.11 2.57
2078 2087 3.513912 CCCATGACTTCTGTGTACCACTA 59.486 47.826 0.00 0.00 35.11 2.74
2079 2088 2.303022 CCCATGACTTCTGTGTACCACT 59.697 50.000 0.00 0.00 35.11 4.00
2080 2089 2.038557 ACCCATGACTTCTGTGTACCAC 59.961 50.000 0.00 0.00 34.56 4.16
2081 2090 2.038426 CACCCATGACTTCTGTGTACCA 59.962 50.000 0.00 0.00 0.00 3.25
2082 2091 2.301870 TCACCCATGACTTCTGTGTACC 59.698 50.000 0.00 0.00 0.00 3.34
2083 2092 3.678056 TCACCCATGACTTCTGTGTAC 57.322 47.619 0.00 0.00 0.00 2.90
2084 2093 3.837731 TGATCACCCATGACTTCTGTGTA 59.162 43.478 0.00 0.00 37.79 2.90
2085 2094 2.639347 TGATCACCCATGACTTCTGTGT 59.361 45.455 0.00 0.00 37.79 3.72
2086 2095 3.339253 TGATCACCCATGACTTCTGTG 57.661 47.619 0.00 0.00 37.79 3.66
2087 2096 4.267536 CAATGATCACCCATGACTTCTGT 58.732 43.478 0.00 0.00 37.79 3.41
2088 2097 3.630769 CCAATGATCACCCATGACTTCTG 59.369 47.826 0.00 0.00 37.79 3.02
2089 2098 3.267812 ACCAATGATCACCCATGACTTCT 59.732 43.478 0.00 0.00 37.79 2.85
2090 2099 3.624777 ACCAATGATCACCCATGACTTC 58.375 45.455 0.00 0.00 37.79 3.01
2091 2100 3.624777 GACCAATGATCACCCATGACTT 58.375 45.455 0.00 0.00 37.79 3.01
2092 2101 2.092212 GGACCAATGATCACCCATGACT 60.092 50.000 0.00 0.00 37.79 3.41
2093 2102 2.301346 GGACCAATGATCACCCATGAC 58.699 52.381 0.00 0.00 37.79 3.06
2094 2103 1.134128 CGGACCAATGATCACCCATGA 60.134 52.381 0.00 0.00 39.83 3.07
2095 2104 1.134128 TCGGACCAATGATCACCCATG 60.134 52.381 0.00 0.00 0.00 3.66
2096 2105 1.212375 TCGGACCAATGATCACCCAT 58.788 50.000 0.00 0.00 0.00 4.00
2097 2106 1.134128 CATCGGACCAATGATCACCCA 60.134 52.381 0.00 0.00 0.00 4.51
2098 2107 1.597742 CATCGGACCAATGATCACCC 58.402 55.000 0.00 0.00 0.00 4.61
2099 2108 0.947244 GCATCGGACCAATGATCACC 59.053 55.000 0.00 0.00 0.00 4.02
2100 2109 1.959042 AGCATCGGACCAATGATCAC 58.041 50.000 0.00 0.00 0.00 3.06
2101 2110 2.564771 GAAGCATCGGACCAATGATCA 58.435 47.619 0.00 0.00 0.00 2.92
2102 2111 1.528586 CGAAGCATCGGACCAATGATC 59.471 52.381 2.82 0.00 45.32 2.92
2103 2112 1.586422 CGAAGCATCGGACCAATGAT 58.414 50.000 2.82 0.00 45.32 2.45
2104 2113 3.064079 CGAAGCATCGGACCAATGA 57.936 52.632 2.82 0.00 45.32 2.57
2114 2123 1.582610 TTGGTTTCGCCCGAAGCATC 61.583 55.000 16.78 3.82 44.04 3.91
2115 2124 0.965363 ATTGGTTTCGCCCGAAGCAT 60.965 50.000 16.78 2.82 44.04 3.79
2116 2125 1.175983 AATTGGTTTCGCCCGAAGCA 61.176 50.000 16.78 9.22 44.04 3.91
2117 2126 0.456142 GAATTGGTTTCGCCCGAAGC 60.456 55.000 8.46 8.46 35.38 3.86
2118 2127 0.170339 GGAATTGGTTTCGCCCGAAG 59.830 55.000 3.21 0.00 34.98 3.79
2119 2128 1.245376 GGGAATTGGTTTCGCCCGAA 61.245 55.000 0.00 0.00 40.46 4.30
2120 2129 1.676303 GGGAATTGGTTTCGCCCGA 60.676 57.895 0.00 0.00 40.46 5.14
2121 2130 1.933115 CTGGGAATTGGTTTCGCCCG 61.933 60.000 0.00 0.00 44.47 6.13
2122 2131 1.604147 CCTGGGAATTGGTTTCGCCC 61.604 60.000 0.00 0.00 44.47 6.13
2123 2132 1.604147 CCCTGGGAATTGGTTTCGCC 61.604 60.000 7.01 0.00 44.47 5.54
2124 2133 0.898326 ACCCTGGGAATTGGTTTCGC 60.898 55.000 22.23 0.00 45.12 4.70
2125 2134 0.887933 CACCCTGGGAATTGGTTTCG 59.112 55.000 22.23 0.00 34.98 3.46
2126 2135 1.618343 CACACCCTGGGAATTGGTTTC 59.382 52.381 22.23 0.00 0.00 2.78
2127 2136 1.219213 TCACACCCTGGGAATTGGTTT 59.781 47.619 22.23 0.00 0.00 3.27
2128 2137 0.856982 TCACACCCTGGGAATTGGTT 59.143 50.000 22.23 0.00 0.00 3.67
2129 2138 0.112412 GTCACACCCTGGGAATTGGT 59.888 55.000 22.23 6.34 27.62 3.67
2130 2139 0.960364 CGTCACACCCTGGGAATTGG 60.960 60.000 22.23 5.69 27.62 3.16
2131 2140 0.960364 CCGTCACACCCTGGGAATTG 60.960 60.000 22.23 10.23 27.62 2.32
2132 2141 1.378762 CCGTCACACCCTGGGAATT 59.621 57.895 22.23 0.00 27.62 2.17
2133 2142 2.602676 CCCGTCACACCCTGGGAAT 61.603 63.158 22.23 3.33 44.88 3.01
2134 2143 3.246112 CCCGTCACACCCTGGGAA 61.246 66.667 22.23 0.00 44.88 3.97
2142 2151 3.502990 TACACACCGCCCGTCACAC 62.503 63.158 0.00 0.00 0.00 3.82
2143 2152 3.225061 TACACACCGCCCGTCACA 61.225 61.111 0.00 0.00 0.00 3.58
2144 2153 2.735857 GTACACACCGCCCGTCAC 60.736 66.667 0.00 0.00 0.00 3.67
2145 2154 3.215597 CTGTACACACCGCCCGTCA 62.216 63.158 0.00 0.00 0.00 4.35
2146 2155 2.431942 CTGTACACACCGCCCGTC 60.432 66.667 0.00 0.00 0.00 4.79
2147 2156 3.998672 CCTGTACACACCGCCCGT 61.999 66.667 0.00 0.00 0.00 5.28
2148 2157 4.752879 CCCTGTACACACCGCCCG 62.753 72.222 0.00 0.00 0.00 6.13
2152 2161 4.752879 CGGGCCCTGTACACACCG 62.753 72.222 22.43 0.00 35.01 4.94
2153 2162 4.404098 CCGGGCCCTGTACACACC 62.404 72.222 22.43 0.00 0.00 4.16
2154 2163 4.404098 CCCGGGCCCTGTACACAC 62.404 72.222 22.43 0.00 0.00 3.82
2155 2164 3.542864 TACCCGGGCCCTGTACACA 62.543 63.158 24.08 0.00 0.00 3.72
2156 2165 2.684655 TACCCGGGCCCTGTACAC 60.685 66.667 24.08 0.00 0.00 2.90
2157 2166 2.684655 GTACCCGGGCCCTGTACA 60.685 66.667 31.49 11.63 35.92 2.90
2158 2167 0.760189 TATGTACCCGGGCCCTGTAC 60.760 60.000 30.54 30.54 36.30 2.90
2159 2168 0.191563 ATATGTACCCGGGCCCTGTA 59.808 55.000 24.08 18.15 0.00 2.74
2160 2169 0.696485 AATATGTACCCGGGCCCTGT 60.696 55.000 24.08 19.27 0.00 4.00
2161 2170 0.036306 GAATATGTACCCGGGCCCTG 59.964 60.000 24.08 14.41 0.00 4.45
2162 2171 0.400815 TGAATATGTACCCGGGCCCT 60.401 55.000 24.08 3.13 0.00 5.19
2163 2172 0.250597 GTGAATATGTACCCGGGCCC 60.251 60.000 24.08 13.57 0.00 5.80
2164 2173 0.250597 GGTGAATATGTACCCGGGCC 60.251 60.000 24.08 12.79 0.00 5.80
2165 2174 0.601841 CGGTGAATATGTACCCGGGC 60.602 60.000 24.08 5.60 35.11 6.13
2166 2175 0.601841 GCGGTGAATATGTACCCGGG 60.602 60.000 22.25 22.25 39.05 5.73
2167 2176 0.942410 CGCGGTGAATATGTACCCGG 60.942 60.000 0.00 0.00 39.05 5.73
2168 2177 0.942410 CCGCGGTGAATATGTACCCG 60.942 60.000 19.50 0.70 41.50 5.28
2169 2178 1.226030 GCCGCGGTGAATATGTACCC 61.226 60.000 28.70 0.08 33.32 3.69
2170 2179 0.531090 TGCCGCGGTGAATATGTACC 60.531 55.000 28.70 5.44 0.00 3.34
2171 2180 1.194547 CATGCCGCGGTGAATATGTAC 59.805 52.381 28.70 6.03 0.00 2.90
2172 2181 1.507562 CATGCCGCGGTGAATATGTA 58.492 50.000 28.70 0.00 0.00 2.29
2173 2182 2.320215 CATGCCGCGGTGAATATGT 58.680 52.632 28.70 0.85 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.