Multiple sequence alignment - TraesCS6A01G373700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G373700 chr6A 100.000 3161 0 0 1 3161 596888129 596891289 0.000000e+00 5838.0
1 TraesCS6A01G373700 chr6B 94.722 2804 107 16 375 3161 685303484 685306263 0.000000e+00 4320.0
2 TraesCS6A01G373700 chr6D 94.355 2604 73 15 589 3161 451155216 451157776 0.000000e+00 3927.0
3 TraesCS6A01G373700 chr6D 89.030 474 35 7 75 546 451154749 451155207 3.540000e-159 571.0
4 TraesCS6A01G373700 chr6D 80.226 177 33 2 1 176 7866754 7866929 7.110000e-27 132.0
5 TraesCS6A01G373700 chr6D 97.403 77 2 0 1 77 451154558 451154634 7.110000e-27 132.0
6 TraesCS6A01G373700 chr6D 95.082 61 3 0 263 323 451154873 451154933 2.600000e-16 97.1
7 TraesCS6A01G373700 chr2B 87.295 244 26 3 347 589 692920057 692919818 1.120000e-69 274.0
8 TraesCS6A01G373700 chr2B 82.772 267 39 4 341 605 150988084 150988345 6.820000e-57 231.0
9 TraesCS6A01G373700 chr7B 85.944 249 30 3 342 589 183651066 183650822 8.700000e-66 261.0
10 TraesCS6A01G373700 chr3B 85.542 249 31 3 342 589 543773639 543773395 4.050000e-64 255.0
11 TraesCS6A01G373700 chr7D 83.643 269 36 3 342 605 204457495 204457230 2.440000e-61 246.0
12 TraesCS6A01G373700 chr7D 81.148 244 36 3 1 235 636776772 636776530 1.500000e-43 187.0
13 TraesCS6A01G373700 chr1A 83.212 274 40 4 336 607 355633829 355634098 2.440000e-61 246.0
14 TraesCS6A01G373700 chr1A 84.553 246 35 1 342 587 584496359 584496601 1.130000e-59 241.0
15 TraesCS6A01G373700 chr2A 84.274 248 36 1 342 589 72391320 72391564 4.070000e-59 239.0
16 TraesCS6A01G373700 chr7A 82.028 217 29 3 1 208 729391824 729392039 3.240000e-40 176.0
17 TraesCS6A01G373700 chr5D 84.024 169 14 5 1 169 91556530 91556685 1.960000e-32 150.0
18 TraesCS6A01G373700 chr5D 97.297 37 1 0 172 208 460085817 460085853 2.630000e-06 63.9
19 TraesCS6A01G373700 chr5A 83.133 166 15 2 1 166 85258872 85259024 4.250000e-29 139.0
20 TraesCS6A01G373700 chr2D 78.894 199 34 6 17 208 558242676 558242873 9.200000e-26 128.0
21 TraesCS6A01G373700 chr4D 88.889 99 10 1 1 99 87957752 87957849 1.540000e-23 121.0
22 TraesCS6A01G373700 chr3A 76.404 178 27 13 13 180 624442780 624442952 7.270000e-12 82.4
23 TraesCS6A01G373700 chr1B 92.683 41 3 0 172 212 500986661 500986621 3.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G373700 chr6A 596888129 596891289 3160 False 5838.000 5838 100.0000 1 3161 1 chr6A.!!$F1 3160
1 TraesCS6A01G373700 chr6B 685303484 685306263 2779 False 4320.000 4320 94.7220 375 3161 1 chr6B.!!$F1 2786
2 TraesCS6A01G373700 chr6D 451154558 451157776 3218 False 1181.775 3927 93.9675 1 3161 4 chr6D.!!$F2 3160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 488 0.383949 GCTCGGGACTTGTTTTGCAA 59.616 50.0 0.0 0.0 35.5 4.08 F
502 622 0.393808 GCTAGATTTTGGGTCGGGCA 60.394 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2072 1.807573 GAGGAAGAAGAGCCGCGTG 60.808 63.158 4.92 0.0 0.0 5.34 R
2391 2553 2.096980 TCGCCTCTATATTATGCCGTCG 59.903 50.000 0.00 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.514592 CGAATGACATGGCGGGCT 60.515 61.111 2.38 0.00 0.00 5.19
112 230 3.650950 GCCCAACCTGAGGCCTGA 61.651 66.667 12.00 0.00 43.76 3.86
113 231 2.352805 CCCAACCTGAGGCCTGAC 59.647 66.667 12.00 0.00 0.00 3.51
114 232 2.046892 CCAACCTGAGGCCTGACG 60.047 66.667 12.00 0.00 0.00 4.35
115 233 2.046892 CAACCTGAGGCCTGACGG 60.047 66.667 12.00 10.33 0.00 4.79
214 333 2.527893 TTTTTAGGCCCGACCCCGT 61.528 57.895 0.00 0.00 40.58 5.28
216 335 3.910784 TTTAGGCCCGACCCCGTCT 62.911 63.158 0.00 0.00 40.58 4.18
230 349 0.824109 CCGTCTGAGTTATGGCCTGA 59.176 55.000 3.32 0.00 0.00 3.86
248 367 4.202182 GCCTGATATACCCGTGACTAAACA 60.202 45.833 0.00 0.00 0.00 2.83
261 380 1.086696 CTAAACACGGGCATGGACAG 58.913 55.000 0.00 0.00 0.00 3.51
295 415 1.332144 TGGCCTGGTATACCCGTGAC 61.332 60.000 19.42 10.06 35.15 3.67
340 460 1.087771 CCGAATAACACGGGTCAGGC 61.088 60.000 0.00 0.00 45.65 4.85
368 488 0.383949 GCTCGGGACTTGTTTTGCAA 59.616 50.000 0.00 0.00 35.50 4.08
371 491 0.457851 CGGGACTTGTTTTGCAACCA 59.542 50.000 0.00 0.00 32.90 3.67
389 509 3.371965 ACCAGAAAGATAGTTCGGGCTA 58.628 45.455 4.32 0.00 44.11 3.93
390 510 3.773119 ACCAGAAAGATAGTTCGGGCTAA 59.227 43.478 4.32 0.00 44.11 3.09
433 553 4.704833 TCGAGCTGGGCTTGCACC 62.705 66.667 0.00 0.00 39.88 5.01
438 558 3.663176 CTGGGCTTGCACCACGTG 61.663 66.667 9.08 9.08 36.51 4.49
502 622 0.393808 GCTAGATTTTGGGTCGGGCA 60.394 55.000 0.00 0.00 0.00 5.36
520 642 2.159114 GGCACAGGCTTGAAAACAAAGA 60.159 45.455 1.40 0.00 40.87 2.52
521 643 3.118542 GCACAGGCTTGAAAACAAAGAG 58.881 45.455 1.40 0.00 36.96 2.85
528 650 7.147915 ACAGGCTTGAAAACAAAGAGTATTTCA 60.148 33.333 1.40 0.00 36.44 2.69
535 657 6.959639 AAACAAAGAGTATTTCAGGCTTCA 57.040 33.333 0.00 0.00 0.00 3.02
565 687 1.740025 CGGGCTTGAGAAATGAAGGTC 59.260 52.381 0.00 0.00 0.00 3.85
566 688 1.740025 GGGCTTGAGAAATGAAGGTCG 59.260 52.381 0.00 0.00 0.00 4.79
567 689 1.740025 GGCTTGAGAAATGAAGGTCGG 59.260 52.381 0.00 0.00 0.00 4.79
568 690 1.740025 GCTTGAGAAATGAAGGTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
569 691 1.740025 CTTGAGAAATGAAGGTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
570 692 0.984230 TGAGAAATGAAGGTCGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
571 693 1.351017 TGAGAAATGAAGGTCGGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
572 694 2.224769 TGAGAAATGAAGGTCGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
573 695 2.820197 GAGAAATGAAGGTCGGGCTTTT 59.180 45.455 0.00 0.00 0.00 2.27
574 696 4.007659 GAGAAATGAAGGTCGGGCTTTTA 58.992 43.478 0.00 0.00 0.00 1.52
575 697 3.756963 AGAAATGAAGGTCGGGCTTTTAC 59.243 43.478 0.00 0.00 0.00 2.01
576 698 2.871096 ATGAAGGTCGGGCTTTTACA 57.129 45.000 0.00 0.00 0.00 2.41
577 699 2.642154 TGAAGGTCGGGCTTTTACAA 57.358 45.000 0.00 0.00 0.00 2.41
578 700 2.500229 TGAAGGTCGGGCTTTTACAAG 58.500 47.619 0.00 0.00 0.00 3.16
1692 1820 1.956170 CGAGGTGTTCAACTGCGCT 60.956 57.895 9.73 0.00 0.00 5.92
1863 1991 1.517257 GAGCGTCATGGACCACTCG 60.517 63.158 0.00 3.27 0.00 4.18
1866 1994 2.509336 GTCATGGACCACTCGGCG 60.509 66.667 0.00 0.00 34.57 6.46
1869 1997 4.457496 ATGGACCACTCGGCGCTG 62.457 66.667 10.86 10.86 34.57 5.18
2370 2532 9.979578 TTTATATGAATGCAAGAAAACACAAGT 57.020 25.926 0.00 0.00 0.00 3.16
2391 2553 9.178758 ACAAGTATCTGGAAAATGAGAATAACC 57.821 33.333 0.00 0.00 0.00 2.85
2394 2556 6.927294 ATCTGGAAAATGAGAATAACCGAC 57.073 37.500 0.00 0.00 0.00 4.79
2485 2653 4.832248 TCGAGTTATCAGGTTCAGCAAAT 58.168 39.130 0.00 0.00 0.00 2.32
2553 2721 1.051812 ATGAGTTATGCCCGAGGGAG 58.948 55.000 13.28 0.00 37.50 4.30
2557 2725 2.104963 GAGTTATGCCCGAGGGAGAAAT 59.895 50.000 13.28 0.00 37.50 2.17
2585 2753 3.177997 ACAAACCATCAAAACAGCCAC 57.822 42.857 0.00 0.00 0.00 5.01
2588 2756 4.037923 ACAAACCATCAAAACAGCCACTAG 59.962 41.667 0.00 0.00 0.00 2.57
2622 2790 2.161855 TGCTCTTGGCGAACAAATGAT 58.838 42.857 0.00 0.00 45.43 2.45
2626 2794 3.680490 TCTTGGCGAACAAATGATGGTA 58.320 40.909 0.00 0.00 38.91 3.25
2639 2807 5.453567 AATGATGGTATTCGTCGATCTCA 57.546 39.130 0.00 0.00 34.17 3.27
2673 2841 4.877823 TGTTTATGAGCAGACAAGCTATGG 59.122 41.667 0.00 0.00 46.75 2.74
2674 2842 4.760530 TTATGAGCAGACAAGCTATGGT 57.239 40.909 0.00 0.00 46.75 3.55
2675 2843 3.641434 ATGAGCAGACAAGCTATGGTT 57.359 42.857 0.00 0.00 46.75 3.67
2676 2844 4.760530 ATGAGCAGACAAGCTATGGTTA 57.239 40.909 0.00 0.00 46.75 2.85
2677 2845 3.861840 TGAGCAGACAAGCTATGGTTAC 58.138 45.455 0.00 0.00 46.75 2.50
2678 2846 3.515502 TGAGCAGACAAGCTATGGTTACT 59.484 43.478 0.00 0.00 46.75 2.24
2679 2847 4.709886 TGAGCAGACAAGCTATGGTTACTA 59.290 41.667 0.00 0.00 46.75 1.82
2680 2848 5.012328 AGCAGACAAGCTATGGTTACTAC 57.988 43.478 0.00 0.00 44.50 2.73
2681 2849 4.466370 AGCAGACAAGCTATGGTTACTACA 59.534 41.667 0.00 0.00 44.50 2.74
2682 2850 4.567159 GCAGACAAGCTATGGTTACTACAC 59.433 45.833 0.00 0.00 0.00 2.90
2683 2851 4.798907 CAGACAAGCTATGGTTACTACACG 59.201 45.833 0.00 0.00 0.00 4.49
2684 2852 3.518590 ACAAGCTATGGTTACTACACGC 58.481 45.455 0.00 0.00 0.00 5.34
2685 2853 3.194968 ACAAGCTATGGTTACTACACGCT 59.805 43.478 0.00 0.00 31.74 5.07
2686 2854 3.712091 AGCTATGGTTACTACACGCTC 57.288 47.619 0.00 0.00 0.00 5.03
2687 2855 2.361438 AGCTATGGTTACTACACGCTCC 59.639 50.000 0.00 0.00 0.00 4.70
2688 2856 2.100252 GCTATGGTTACTACACGCTCCA 59.900 50.000 0.00 0.00 0.00 3.86
2689 2857 2.667473 ATGGTTACTACACGCTCCAC 57.333 50.000 0.00 0.00 0.00 4.02
2690 2858 1.624336 TGGTTACTACACGCTCCACT 58.376 50.000 0.00 0.00 0.00 4.00
2691 2859 2.794103 TGGTTACTACACGCTCCACTA 58.206 47.619 0.00 0.00 0.00 2.74
2692 2860 3.359033 TGGTTACTACACGCTCCACTAT 58.641 45.455 0.00 0.00 0.00 2.12
2693 2861 3.765511 TGGTTACTACACGCTCCACTATT 59.234 43.478 0.00 0.00 0.00 1.73
2694 2862 4.221262 TGGTTACTACACGCTCCACTATTT 59.779 41.667 0.00 0.00 0.00 1.40
2695 2863 4.802563 GGTTACTACACGCTCCACTATTTC 59.197 45.833 0.00 0.00 0.00 2.17
2696 2864 5.404946 GTTACTACACGCTCCACTATTTCA 58.595 41.667 0.00 0.00 0.00 2.69
2697 2865 4.530710 ACTACACGCTCCACTATTTCAA 57.469 40.909 0.00 0.00 0.00 2.69
2698 2866 4.243270 ACTACACGCTCCACTATTTCAAC 58.757 43.478 0.00 0.00 0.00 3.18
2790 2984 2.446435 GAATGTAAGAGGCAGGCCAAA 58.554 47.619 13.63 0.00 38.92 3.28
2795 2989 3.761752 TGTAAGAGGCAGGCCAAATTTAC 59.238 43.478 13.63 13.94 38.92 2.01
2800 2994 3.444029 AGGCAGGCCAAATTTACTTCAT 58.556 40.909 13.63 0.00 38.92 2.57
2828 3022 7.305993 GGTTGATAAAAACAGAGCAAAAGTTCG 60.306 37.037 0.00 0.00 0.00 3.95
2952 3146 4.924305 TCAACAGCTTGCAAAATTCTCT 57.076 36.364 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.053077 ACATATGTTAAGCCCAGCCCTA 58.947 45.455 1.41 0.00 0.00 3.53
108 226 1.073199 AGTGGAAAAGCCCGTCAGG 59.927 57.895 0.00 0.00 39.47 3.86
109 227 1.237285 CCAGTGGAAAAGCCCGTCAG 61.237 60.000 1.68 0.00 34.97 3.51
110 228 1.228124 CCAGTGGAAAAGCCCGTCA 60.228 57.895 1.68 0.00 34.97 4.35
111 229 2.626780 GCCAGTGGAAAAGCCCGTC 61.627 63.158 15.20 0.00 34.97 4.79
112 230 2.597510 GCCAGTGGAAAAGCCCGT 60.598 61.111 15.20 0.00 34.97 5.28
113 231 3.737172 CGCCAGTGGAAAAGCCCG 61.737 66.667 15.20 0.27 34.97 6.13
114 232 3.373565 CCGCCAGTGGAAAAGCCC 61.374 66.667 15.20 0.00 34.97 5.19
115 233 3.373565 CCCGCCAGTGGAAAAGCC 61.374 66.667 15.20 0.00 37.10 4.35
212 331 2.898729 ATCAGGCCATAACTCAGACG 57.101 50.000 5.01 0.00 0.00 4.18
214 333 4.777896 GGGTATATCAGGCCATAACTCAGA 59.222 45.833 5.01 0.00 0.00 3.27
216 335 3.513912 CGGGTATATCAGGCCATAACTCA 59.486 47.826 5.01 0.00 0.00 3.41
261 380 4.929707 CCATAACTCGGGCCGGGC 62.930 72.222 28.95 22.00 0.00 6.13
295 415 0.748005 CTGTCCATGCCCGGGTTTAG 60.748 60.000 24.63 9.46 0.00 1.85
368 488 2.188817 AGCCCGAACTATCTTTCTGGT 58.811 47.619 0.00 0.00 33.54 4.00
371 491 3.707102 AGCTTAGCCCGAACTATCTTTCT 59.293 43.478 0.00 0.00 0.00 2.52
395 515 6.281405 TCGAAATACAGAAATAGAGAAGCCC 58.719 40.000 0.00 0.00 0.00 5.19
453 573 2.400269 AAAGCCCGGCCTGAACGTTA 62.400 55.000 5.55 0.00 0.00 3.18
486 606 0.609131 CTGTGCCCGACCCAAAATCT 60.609 55.000 0.00 0.00 0.00 2.40
502 622 6.715347 AATACTCTTTGTTTTCAAGCCTGT 57.285 33.333 0.00 0.00 41.09 4.00
568 690 2.571757 GGCGGGGCTTGTAAAAGC 59.428 61.111 9.32 9.32 44.76 3.51
569 691 2.696759 CGGGCGGGGCTTGTAAAAG 61.697 63.158 0.00 0.00 0.00 2.27
570 692 2.673687 CGGGCGGGGCTTGTAAAA 60.674 61.111 0.00 0.00 0.00 1.52
571 693 3.638316 TCGGGCGGGGCTTGTAAA 61.638 61.111 0.00 0.00 0.00 2.01
572 694 4.397832 GTCGGGCGGGGCTTGTAA 62.398 66.667 0.00 0.00 0.00 2.41
1944 2072 1.807573 GAGGAAGAAGAGCCGCGTG 60.808 63.158 4.92 0.00 0.00 5.34
2353 2515 5.769662 TCCAGATACTTGTGTTTTCTTGCAT 59.230 36.000 0.00 0.00 0.00 3.96
2360 2522 8.463930 TCTCATTTTCCAGATACTTGTGTTTT 57.536 30.769 0.00 0.00 0.00 2.43
2365 2527 9.178758 GGTTATTCTCATTTTCCAGATACTTGT 57.821 33.333 0.00 0.00 0.00 3.16
2370 2532 6.700081 CGTCGGTTATTCTCATTTTCCAGATA 59.300 38.462 0.00 0.00 0.00 1.98
2391 2553 2.096980 TCGCCTCTATATTATGCCGTCG 59.903 50.000 0.00 0.00 0.00 5.12
2394 2556 4.929808 AGTTTTCGCCTCTATATTATGCCG 59.070 41.667 0.00 0.00 0.00 5.69
2436 2604 6.986817 TCTCTGAACCTTCGATAAAATGATCC 59.013 38.462 0.00 0.00 0.00 3.36
2485 2653 4.820897 ACTAAATCATCAGTCGTGAGCAA 58.179 39.130 0.00 0.00 35.66 3.91
2553 2721 8.872845 GTTTTGATGGTTTGTATCATCCATTTC 58.127 33.333 0.00 0.00 40.24 2.17
2557 2725 6.572119 GCTGTTTTGATGGTTTGTATCATCCA 60.572 38.462 0.00 0.00 39.06 3.41
2622 2790 2.288213 GGCATGAGATCGACGAATACCA 60.288 50.000 0.00 0.00 0.00 3.25
2626 2794 0.941463 GCGGCATGAGATCGACGAAT 60.941 55.000 0.00 0.00 0.00 3.34
2639 2807 2.033801 GCTCATAAACAATCTGCGGCAT 59.966 45.455 1.75 0.00 0.00 4.40
2673 2841 5.404946 TGAAATAGTGGAGCGTGTAGTAAC 58.595 41.667 0.00 0.00 0.00 2.50
2674 2842 5.648178 TGAAATAGTGGAGCGTGTAGTAA 57.352 39.130 0.00 0.00 0.00 2.24
2675 2843 5.404946 GTTGAAATAGTGGAGCGTGTAGTA 58.595 41.667 0.00 0.00 0.00 1.82
2676 2844 4.243270 GTTGAAATAGTGGAGCGTGTAGT 58.757 43.478 0.00 0.00 0.00 2.73
2677 2845 3.303495 CGTTGAAATAGTGGAGCGTGTAG 59.697 47.826 0.00 0.00 0.00 2.74
2678 2846 3.247442 CGTTGAAATAGTGGAGCGTGTA 58.753 45.455 0.00 0.00 0.00 2.90
2679 2847 2.066262 CGTTGAAATAGTGGAGCGTGT 58.934 47.619 0.00 0.00 0.00 4.49
2680 2848 2.066262 ACGTTGAAATAGTGGAGCGTG 58.934 47.619 0.00 0.00 0.00 5.34
2681 2849 2.450609 ACGTTGAAATAGTGGAGCGT 57.549 45.000 0.00 0.00 0.00 5.07
2682 2850 4.914312 TTAACGTTGAAATAGTGGAGCG 57.086 40.909 11.99 0.00 0.00 5.03
2683 2851 6.837992 TCAATTAACGTTGAAATAGTGGAGC 58.162 36.000 11.99 0.00 35.31 4.70
2684 2852 8.286800 TGTTCAATTAACGTTGAAATAGTGGAG 58.713 33.333 11.99 0.00 46.31 3.86
2685 2853 8.071368 GTGTTCAATTAACGTTGAAATAGTGGA 58.929 33.333 11.99 0.00 46.31 4.02
2686 2854 8.073768 AGTGTTCAATTAACGTTGAAATAGTGG 58.926 33.333 11.99 0.00 46.31 4.00
2687 2855 8.891928 CAGTGTTCAATTAACGTTGAAATAGTG 58.108 33.333 11.99 8.43 46.31 2.74
2688 2856 8.073768 CCAGTGTTCAATTAACGTTGAAATAGT 58.926 33.333 11.99 0.09 46.31 2.12
2689 2857 8.286800 TCCAGTGTTCAATTAACGTTGAAATAG 58.713 33.333 11.99 0.00 46.31 1.73
2690 2858 8.155821 TCCAGTGTTCAATTAACGTTGAAATA 57.844 30.769 11.99 0.00 46.31 1.40
2691 2859 7.012894 TCTCCAGTGTTCAATTAACGTTGAAAT 59.987 33.333 11.99 0.09 46.31 2.17
2692 2860 6.316640 TCTCCAGTGTTCAATTAACGTTGAAA 59.683 34.615 11.99 0.00 46.31 2.69
2693 2861 5.818336 TCTCCAGTGTTCAATTAACGTTGAA 59.182 36.000 11.99 3.39 43.66 2.69
2694 2862 5.235616 GTCTCCAGTGTTCAATTAACGTTGA 59.764 40.000 11.99 2.22 41.30 3.18
2695 2863 5.236478 AGTCTCCAGTGTTCAATTAACGTTG 59.764 40.000 11.99 0.00 41.30 4.10
2696 2864 5.365619 AGTCTCCAGTGTTCAATTAACGTT 58.634 37.500 5.88 5.88 41.30 3.99
2697 2865 4.957296 AGTCTCCAGTGTTCAATTAACGT 58.043 39.130 0.00 0.00 41.30 3.99
2698 2866 7.596749 ATTAGTCTCCAGTGTTCAATTAACG 57.403 36.000 0.00 0.00 41.30 3.18
2795 2989 8.044060 TGCTCTGTTTTTATCAACCTATGAAG 57.956 34.615 0.00 0.00 42.54 3.02
2800 2994 8.232913 ACTTTTGCTCTGTTTTTATCAACCTA 57.767 30.769 0.00 0.00 0.00 3.08
2828 3022 4.023707 AGCATGCAAGAGTGAGTTTACAAC 60.024 41.667 21.98 0.00 0.00 3.32
2952 3146 1.741401 CCGGAGCGTTGCTTCATCA 60.741 57.895 0.00 0.00 39.88 3.07
3092 3286 5.559148 ACAAGGAGAAGATATGGGATCAC 57.441 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.