Multiple sequence alignment - TraesCS6A01G373300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G373300 chr6A 100.000 2996 0 0 1 2996 596738741 596741736 0.000000e+00 5533.0
1 TraesCS6A01G373300 chr6A 79.970 659 84 28 1 617 530135116 530135768 2.740000e-120 442.0
2 TraesCS6A01G373300 chr6A 81.818 165 18 6 2476 2638 108179053 108178899 8.720000e-26 128.0
3 TraesCS6A01G373300 chr6D 87.903 2422 169 55 658 2996 451081815 451084195 0.000000e+00 2736.0
4 TraesCS6A01G373300 chr6D 79.630 648 85 24 1 601 378424777 378424130 3.570000e-114 422.0
5 TraesCS6A01G373300 chr6D 80.851 235 31 7 2475 2708 358361382 358361161 3.970000e-39 172.0
6 TraesCS6A01G373300 chr6B 85.725 1387 82 47 677 1971 685016647 685018009 0.000000e+00 1358.0
7 TraesCS6A01G373300 chr6B 87.627 493 43 8 130 614 685007382 685007864 9.380000e-155 556.0
8 TraesCS6A01G373300 chr6B 82.895 456 44 16 2009 2454 685018009 685018440 2.180000e-101 379.0
9 TraesCS6A01G373300 chr6B 77.709 323 49 15 191 494 125197120 125197438 3.070000e-40 176.0
10 TraesCS6A01G373300 chr1D 80.586 649 72 21 1 601 482527194 482526552 4.550000e-123 451.0
11 TraesCS6A01G373300 chr1D 80.728 467 41 21 199 617 459815947 459815482 4.820000e-83 318.0
12 TraesCS6A01G373300 chr1D 82.085 307 31 11 335 617 416594552 416594858 1.070000e-59 241.0
13 TraesCS6A01G373300 chr2B 79.129 666 87 23 1 617 306924314 306923652 2.150000e-111 412.0
14 TraesCS6A01G373300 chr2B 77.696 677 89 33 1 617 90755131 90755805 1.020000e-94 357.0
15 TraesCS6A01G373300 chr2B 80.180 111 11 8 402 504 596999121 596999228 4.140000e-09 73.1
16 TraesCS6A01G373300 chr5B 81.136 493 59 21 1 459 107373546 107374038 6.100000e-97 364.0
17 TraesCS6A01G373300 chr5B 81.818 121 21 1 1 120 568732436 568732316 1.900000e-17 100.0
18 TraesCS6A01G373300 chr2D 77.233 571 104 21 1 558 332686139 332685582 8.060000e-81 311.0
19 TraesCS6A01G373300 chr2A 80.840 381 46 9 1 355 766183313 766183692 1.060000e-69 274.0
20 TraesCS6A01G373300 chr7A 80.429 373 47 11 1 347 429433318 429433690 8.240000e-66 261.0
21 TraesCS6A01G373300 chr1A 78.646 384 43 16 1 356 551986948 551987320 5.030000e-53 219.0
22 TraesCS6A01G373300 chr5D 78.761 339 39 19 1 313 462356335 462356004 2.360000e-46 196.0
23 TraesCS6A01G373300 chr5D 85.714 70 10 0 2476 2545 494814844 494814913 1.150000e-09 75.0
24 TraesCS6A01G373300 chr5D 78.899 109 12 5 36 135 565942354 565942460 2.490000e-06 63.9
25 TraesCS6A01G373300 chr5A 94.286 70 4 0 2476 2545 536709652 536709583 1.140000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G373300 chr6A 596738741 596741736 2995 False 5533.0 5533 100.000 1 2996 1 chr6A.!!$F2 2995
1 TraesCS6A01G373300 chr6A 530135116 530135768 652 False 442.0 442 79.970 1 617 1 chr6A.!!$F1 616
2 TraesCS6A01G373300 chr6D 451081815 451084195 2380 False 2736.0 2736 87.903 658 2996 1 chr6D.!!$F1 2338
3 TraesCS6A01G373300 chr6D 378424130 378424777 647 True 422.0 422 79.630 1 601 1 chr6D.!!$R2 600
4 TraesCS6A01G373300 chr6B 685016647 685018440 1793 False 868.5 1358 84.310 677 2454 2 chr6B.!!$F3 1777
5 TraesCS6A01G373300 chr1D 482526552 482527194 642 True 451.0 451 80.586 1 601 1 chr1D.!!$R2 600
6 TraesCS6A01G373300 chr2B 306923652 306924314 662 True 412.0 412 79.129 1 617 1 chr2B.!!$R1 616
7 TraesCS6A01G373300 chr2B 90755131 90755805 674 False 357.0 357 77.696 1 617 1 chr2B.!!$F1 616
8 TraesCS6A01G373300 chr2D 332685582 332686139 557 True 311.0 311 77.233 1 558 1 chr2D.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 715 0.037232 GAGGTGTAGCACGGCTTCTT 60.037 55.0 3.71 0.0 40.44 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 2726 0.173255 CGTTCACAAATGCCATCCCC 59.827 55.0 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.316544 ACCCGTACATGTCTCATTATTTTTC 57.683 36.000 0.00 0.00 0.00 2.29
56 63 0.683973 TTTCGCCCAAACCCGTACTA 59.316 50.000 0.00 0.00 0.00 1.82
65 73 1.708341 AACCCGTACTATACCCGCAT 58.292 50.000 0.00 0.00 0.00 4.73
68 76 2.040278 ACCCGTACTATACCCGCATCTA 59.960 50.000 0.00 0.00 0.00 1.98
80 88 3.815809 CCCGCATCTAGGGTTTCAAATA 58.184 45.455 0.00 0.00 43.89 1.40
85 93 6.127730 CCGCATCTAGGGTTTCAAATAGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
100 108 6.409524 AATAGTTTTCATATCCGTACCCGA 57.590 37.500 0.00 0.00 35.63 5.14
146 157 2.651382 AAAATACCTATCGGCCACCC 57.349 50.000 2.24 0.00 0.00 4.61
165 179 3.081804 CCCTACCCAATTCACACTTCAC 58.918 50.000 0.00 0.00 0.00 3.18
166 180 3.244911 CCCTACCCAATTCACACTTCACT 60.245 47.826 0.00 0.00 0.00 3.41
167 181 3.753272 CCTACCCAATTCACACTTCACTG 59.247 47.826 0.00 0.00 0.00 3.66
208 222 9.495572 TCTACACATATACACACAACATTTCAA 57.504 29.630 0.00 0.00 0.00 2.69
244 282 6.183360 CCACATTTTAGCATTTGTGCACATAC 60.183 38.462 22.39 10.42 38.47 2.39
258 296 4.974275 GTGCACATACAGATGATGATTTGC 59.026 41.667 13.17 0.00 36.48 3.68
260 298 5.358725 TGCACATACAGATGATGATTTGCTT 59.641 36.000 0.00 0.00 36.48 3.91
313 352 8.146412 ATTTTCAGAAATGGATAGCAATAAGCC 58.854 33.333 0.00 0.00 37.79 4.35
373 418 2.766263 TGGATGAGTAGCCTGTAAGTGG 59.234 50.000 0.00 0.00 32.18 4.00
376 421 2.884320 TGAGTAGCCTGTAAGTGGACA 58.116 47.619 0.00 0.00 0.00 4.02
559 625 7.660112 TCAACACATTTAAACAAGATCATGCT 58.340 30.769 0.00 0.00 0.00 3.79
571 643 3.933886 AGATCATGCTTAAGGGGAGAGA 58.066 45.455 4.29 0.00 0.00 3.10
581 653 2.907458 AGGGGAGAGAATTTTGGGTG 57.093 50.000 0.00 0.00 0.00 4.61
589 661 3.333680 AGAGAATTTTGGGTGGAGGCTAA 59.666 43.478 0.00 0.00 0.00 3.09
590 662 4.017130 AGAGAATTTTGGGTGGAGGCTAAT 60.017 41.667 0.00 0.00 0.00 1.73
596 668 0.331616 GGGTGGAGGCTAATGGTTGT 59.668 55.000 0.00 0.00 0.00 3.32
608 680 3.366052 AATGGTTGTGTTAGCCTAGGG 57.634 47.619 11.72 0.00 0.00 3.53
617 689 2.775384 TGTTAGCCTAGGGTACAATGGG 59.225 50.000 20.32 0.00 0.00 4.00
618 690 3.043418 GTTAGCCTAGGGTACAATGGGA 58.957 50.000 20.32 1.07 0.00 4.37
619 691 1.807814 AGCCTAGGGTACAATGGGAG 58.192 55.000 12.99 0.00 0.00 4.30
620 692 1.294068 AGCCTAGGGTACAATGGGAGA 59.706 52.381 12.99 0.00 0.00 3.71
621 693 1.694696 GCCTAGGGTACAATGGGAGAG 59.305 57.143 11.72 0.00 0.00 3.20
622 694 2.960104 GCCTAGGGTACAATGGGAGAGT 60.960 54.545 11.72 0.00 0.00 3.24
623 695 3.693359 GCCTAGGGTACAATGGGAGAGTA 60.693 52.174 11.72 0.00 0.00 2.59
624 696 4.153411 CCTAGGGTACAATGGGAGAGTAG 58.847 52.174 0.00 0.00 0.00 2.57
625 697 4.140994 CCTAGGGTACAATGGGAGAGTAGA 60.141 50.000 0.00 0.00 0.00 2.59
626 698 3.917300 AGGGTACAATGGGAGAGTAGAG 58.083 50.000 0.00 0.00 0.00 2.43
627 699 2.966516 GGGTACAATGGGAGAGTAGAGG 59.033 54.545 0.00 0.00 0.00 3.69
628 700 3.630311 GGGTACAATGGGAGAGTAGAGGT 60.630 52.174 0.00 0.00 0.00 3.85
629 701 3.385111 GGTACAATGGGAGAGTAGAGGTG 59.615 52.174 0.00 0.00 0.00 4.00
630 702 3.191888 ACAATGGGAGAGTAGAGGTGT 57.808 47.619 0.00 0.00 0.00 4.16
631 703 4.332683 ACAATGGGAGAGTAGAGGTGTA 57.667 45.455 0.00 0.00 0.00 2.90
632 704 4.282496 ACAATGGGAGAGTAGAGGTGTAG 58.718 47.826 0.00 0.00 0.00 2.74
633 705 2.438800 TGGGAGAGTAGAGGTGTAGC 57.561 55.000 0.00 0.00 0.00 3.58
634 706 1.639108 TGGGAGAGTAGAGGTGTAGCA 59.361 52.381 0.00 0.00 0.00 3.49
635 707 2.025898 GGGAGAGTAGAGGTGTAGCAC 58.974 57.143 0.00 0.00 0.00 4.40
636 708 1.671845 GGAGAGTAGAGGTGTAGCACG 59.328 57.143 0.00 0.00 34.83 5.34
637 709 1.671845 GAGAGTAGAGGTGTAGCACGG 59.328 57.143 0.00 0.00 34.83 4.94
638 710 0.100861 GAGTAGAGGTGTAGCACGGC 59.899 60.000 0.00 0.00 34.83 5.68
639 711 0.323542 AGTAGAGGTGTAGCACGGCT 60.324 55.000 3.87 3.87 43.41 5.52
640 712 0.531200 GTAGAGGTGTAGCACGGCTT 59.469 55.000 3.71 0.00 40.44 4.35
641 713 0.815734 TAGAGGTGTAGCACGGCTTC 59.184 55.000 3.71 0.21 40.44 3.86
642 714 0.900647 AGAGGTGTAGCACGGCTTCT 60.901 55.000 3.71 0.00 40.44 2.85
643 715 0.037232 GAGGTGTAGCACGGCTTCTT 60.037 55.000 3.71 0.00 40.44 2.52
644 716 0.320771 AGGTGTAGCACGGCTTCTTG 60.321 55.000 3.71 0.00 40.44 3.02
645 717 1.298859 GGTGTAGCACGGCTTCTTGG 61.299 60.000 3.71 0.00 40.44 3.61
646 718 1.671054 TGTAGCACGGCTTCTTGGC 60.671 57.895 3.71 0.00 40.44 4.52
647 719 1.376037 GTAGCACGGCTTCTTGGCT 60.376 57.895 3.71 0.00 40.44 4.75
648 720 0.108329 GTAGCACGGCTTCTTGGCTA 60.108 55.000 3.71 0.00 40.44 3.93
649 721 0.108329 TAGCACGGCTTCTTGGCTAC 60.108 55.000 3.71 0.00 40.44 3.58
650 722 1.671054 GCACGGCTTCTTGGCTACA 60.671 57.895 0.00 0.00 39.32 2.74
651 723 1.639298 GCACGGCTTCTTGGCTACAG 61.639 60.000 0.00 0.00 39.32 2.74
652 724 0.037326 CACGGCTTCTTGGCTACAGA 60.037 55.000 0.00 0.00 39.32 3.41
653 725 0.905357 ACGGCTTCTTGGCTACAGAT 59.095 50.000 0.00 0.00 39.32 2.90
654 726 1.279271 ACGGCTTCTTGGCTACAGATT 59.721 47.619 0.00 0.00 39.32 2.40
655 727 2.290323 ACGGCTTCTTGGCTACAGATTT 60.290 45.455 0.00 0.00 39.32 2.17
656 728 2.096496 CGGCTTCTTGGCTACAGATTTG 59.904 50.000 0.00 0.00 39.32 2.32
659 731 2.128771 TCTTGGCTACAGATTTGCCC 57.871 50.000 0.00 0.00 45.56 5.36
665 737 1.376609 CTACAGATTTGCCCGCCACC 61.377 60.000 0.00 0.00 0.00 4.61
683 755 2.093869 CACCCAGGGCTCAAAAATGATG 60.094 50.000 4.91 0.00 0.00 3.07
692 764 3.243201 GCTCAAAAATGATGGGTCGATCC 60.243 47.826 8.12 8.12 0.00 3.36
710 782 2.673523 CTGGCTCACCTGGGGAAG 59.326 66.667 0.00 0.00 36.63 3.46
712 784 1.463214 TGGCTCACCTGGGGAAGAA 60.463 57.895 0.00 0.00 36.63 2.52
713 785 0.846427 TGGCTCACCTGGGGAAGAAT 60.846 55.000 0.00 0.00 36.63 2.40
714 786 1.213296 GGCTCACCTGGGGAAGAATA 58.787 55.000 0.00 0.00 0.00 1.75
765 837 1.531058 GCCGGTTTCATGCACGTAATC 60.531 52.381 1.90 0.00 0.00 1.75
775 847 1.791662 CACGTAATCGGCCAACCAC 59.208 57.895 2.24 0.00 41.85 4.16
864 950 0.605589 AAAGCCTCTCACTCACTCGG 59.394 55.000 0.00 0.00 0.00 4.63
1079 1217 0.109735 TCGCAGCTGACAACTACTCG 60.110 55.000 20.43 8.13 0.00 4.18
1093 1233 3.922640 CTCGGCTCTAGCTGGCCC 61.923 72.222 17.44 8.56 46.99 5.80
1259 1402 3.898627 CTTCGACGACGGCAGCAGT 62.899 63.158 7.55 0.00 40.21 4.40
1615 1773 5.842874 AGTAAGTCCATCATCATCATCTCCA 59.157 40.000 0.00 0.00 0.00 3.86
1633 1797 8.090214 TCATCTCCAATTTCCATTTCAAAGAAC 58.910 33.333 0.00 0.00 0.00 3.01
1649 1814 5.592282 TCAAAGAACACAAAATCCTACTGCA 59.408 36.000 0.00 0.00 0.00 4.41
1652 1817 5.316167 AGAACACAAAATCCTACTGCATCA 58.684 37.500 0.00 0.00 0.00 3.07
1661 1826 2.899900 TCCTACTGCATCACTGAGTGTT 59.100 45.455 12.93 0.73 34.79 3.32
1662 1827 4.086457 TCCTACTGCATCACTGAGTGTTA 58.914 43.478 12.93 0.00 34.79 2.41
1663 1828 4.158579 TCCTACTGCATCACTGAGTGTTAG 59.841 45.833 12.93 9.06 34.79 2.34
1781 1947 0.038159 ACAGAACGGCACTGCTAGAC 60.038 55.000 0.00 0.00 38.74 2.59
1829 1999 4.835678 TCTGTGAGATTTCAGCTATGCAA 58.164 39.130 0.00 0.00 32.98 4.08
1831 2001 4.582869 TGTGAGATTTCAGCTATGCAACT 58.417 39.130 0.00 0.00 32.98 3.16
1835 2005 5.353400 TGAGATTTCAGCTATGCAACTTCAG 59.647 40.000 0.00 0.00 0.00 3.02
1931 2110 2.561478 TTTCCCGTTTTCTCTCCCAG 57.439 50.000 0.00 0.00 0.00 4.45
1970 2149 5.126779 TGCGGCTATATGTATGTTTTTCCA 58.873 37.500 0.00 0.00 0.00 3.53
1984 2163 6.142818 TGTTTTTCCAACCAGAATACAGTG 57.857 37.500 0.00 0.00 0.00 3.66
1995 2174 5.056480 CCAGAATACAGTGTCAGTTGTCAA 58.944 41.667 0.00 0.00 0.00 3.18
2010 2189 6.038997 AGTTGTCAAACTGTCTACCCTATC 57.961 41.667 0.00 0.00 45.12 2.08
2028 2207 3.592898 ATCGAAAAGGGCCAATTCAAC 57.407 42.857 17.88 4.00 0.00 3.18
2033 2212 1.260544 AAGGGCCAATTCAACTCTGC 58.739 50.000 6.18 0.00 0.00 4.26
2034 2213 0.407139 AGGGCCAATTCAACTCTGCT 59.593 50.000 6.18 0.00 0.00 4.24
2035 2214 1.635487 AGGGCCAATTCAACTCTGCTA 59.365 47.619 6.18 0.00 0.00 3.49
2036 2215 1.745653 GGGCCAATTCAACTCTGCTAC 59.254 52.381 4.39 0.00 0.00 3.58
2047 2226 5.822278 TCAACTCTGCTACTATGTTCGATC 58.178 41.667 0.00 0.00 0.00 3.69
2048 2227 4.475763 ACTCTGCTACTATGTTCGATCG 57.524 45.455 9.36 9.36 0.00 3.69
2063 2242 2.031333 TCGATCGATGCTCTGTCAGATG 60.031 50.000 15.15 0.00 0.00 2.90
2108 2287 3.338249 TCCCAGCTGATTTCTTTTCTCG 58.662 45.455 17.39 0.00 0.00 4.04
2119 2298 2.977914 TCTTTTCTCGATGGAAGCAGG 58.022 47.619 0.00 0.00 0.00 4.85
2120 2299 1.399791 CTTTTCTCGATGGAAGCAGGC 59.600 52.381 0.00 0.00 0.00 4.85
2122 2301 1.552799 TTCTCGATGGAAGCAGGCCA 61.553 55.000 5.01 0.00 40.24 5.36
2124 2303 2.249413 CTCGATGGAAGCAGGCCAGT 62.249 60.000 5.01 0.00 39.11 4.00
2125 2304 2.110967 CGATGGAAGCAGGCCAGTG 61.111 63.158 5.01 0.00 39.11 3.66
2150 2330 2.223135 GCTCGATTTGTAAAGCCTCAGC 60.223 50.000 0.00 0.00 40.32 4.26
2273 2457 0.322546 GACGGGGGAATGTTTGCTCT 60.323 55.000 0.00 0.00 0.00 4.09
2326 2510 1.102978 ACTTCGCTTTTGCCTTGTGT 58.897 45.000 0.00 0.00 43.93 3.72
2329 2522 0.814457 TCGCTTTTGCCTTGTGTTGT 59.186 45.000 0.00 0.00 43.93 3.32
2331 2524 1.289276 GCTTTTGCCTTGTGTTGTGG 58.711 50.000 0.00 0.00 40.15 4.17
2339 2532 1.132262 CCTTGTGTTGTGGTGTGACAC 59.868 52.381 7.29 7.29 42.94 3.67
2340 2533 2.083774 CTTGTGTTGTGGTGTGACACT 58.916 47.619 16.07 0.00 43.03 3.55
2377 2570 3.425162 AGCTTCAGTCTTCCCGATTTT 57.575 42.857 0.00 0.00 0.00 1.82
2385 2578 4.010349 AGTCTTCCCGATTTTGATCAACC 58.990 43.478 7.89 0.00 0.00 3.77
2419 2614 1.878953 AAGACAGTACGCACCCTTTG 58.121 50.000 0.00 0.00 0.00 2.77
2454 2674 6.001449 TGGTTGGATGGGAAATAGTCTAAG 57.999 41.667 0.00 0.00 0.00 2.18
2464 2684 4.039366 GGAAATAGTCTAAGGACATCGCCT 59.961 45.833 0.00 0.00 44.36 5.52
2466 2686 2.445682 AGTCTAAGGACATCGCCTCT 57.554 50.000 0.00 0.00 44.36 3.69
2467 2687 2.303175 AGTCTAAGGACATCGCCTCTC 58.697 52.381 0.00 0.00 44.36 3.20
2519 2739 2.759149 TGGCGGGGATGGCATTTG 60.759 61.111 0.00 0.00 39.79 2.32
2525 2745 0.173255 GGGGATGGCATTTGTGAACG 59.827 55.000 0.00 0.00 0.00 3.95
2531 2751 2.364311 GCATTTGTGAACGGCGTGC 61.364 57.895 15.70 13.80 0.00 5.34
2532 2752 1.729131 CATTTGTGAACGGCGTGCC 60.729 57.895 15.70 9.73 0.00 5.01
2542 2762 3.605664 GGCGTGCCTGGCAGTTTT 61.606 61.111 24.10 0.00 40.08 2.43
2543 2763 2.265182 GGCGTGCCTGGCAGTTTTA 61.265 57.895 24.10 0.00 40.08 1.52
2544 2764 1.210155 GCGTGCCTGGCAGTTTTAG 59.790 57.895 24.10 10.36 40.08 1.85
2545 2765 1.234615 GCGTGCCTGGCAGTTTTAGA 61.235 55.000 24.10 0.00 40.08 2.10
2546 2766 0.517316 CGTGCCTGGCAGTTTTAGAC 59.483 55.000 24.10 6.60 40.08 2.59
2558 2778 7.254852 TGGCAGTTTTAGACTTTTAGTGTTTG 58.745 34.615 0.00 0.00 36.10 2.93
2559 2779 6.695713 GGCAGTTTTAGACTTTTAGTGTTTGG 59.304 38.462 0.00 0.00 36.10 3.28
2561 2781 7.200455 CAGTTTTAGACTTTTAGTGTTTGGGG 58.800 38.462 0.00 0.00 36.10 4.96
2567 2787 5.535030 AGACTTTTAGTGTTTGGGGAATGAC 59.465 40.000 0.00 0.00 0.00 3.06
2576 2796 4.202305 TGTTTGGGGAATGACATTTTGACC 60.202 41.667 1.39 0.00 0.00 4.02
2577 2797 2.534990 TGGGGAATGACATTTTGACCC 58.465 47.619 17.50 17.50 37.43 4.46
2578 2798 1.831106 GGGGAATGACATTTTGACCCC 59.169 52.381 20.51 20.51 46.75 4.95
2597 2817 2.352342 CCCAAAAATCATGGCATTTCGC 59.648 45.455 0.00 0.00 36.58 4.70
2609 2829 5.637006 TGGCATTTCGCTTATTTTAGTGT 57.363 34.783 0.00 0.00 41.91 3.55
2610 2830 6.019779 TGGCATTTCGCTTATTTTAGTGTT 57.980 33.333 0.00 0.00 41.91 3.32
2613 2833 7.439655 TGGCATTTCGCTTATTTTAGTGTTTTT 59.560 29.630 0.00 0.00 41.91 1.94
2636 2856 2.971660 TCTGAAAACTGTCACCGTCA 57.028 45.000 0.00 0.00 0.00 4.35
2638 2858 1.867233 CTGAAAACTGTCACCGTCAGG 59.133 52.381 0.00 0.00 45.13 3.86
2656 2876 3.118629 TCAGGTCTTGATCATGTGGCTAC 60.119 47.826 8.33 0.00 0.00 3.58
2669 2889 3.459063 GCTACGAGGGGGTTCGCT 61.459 66.667 0.00 0.00 44.15 4.93
2686 2906 1.679898 CTCGGCTTTTCCTCCTGGT 59.320 57.895 0.00 0.00 34.23 4.00
2687 2907 0.902531 CTCGGCTTTTCCTCCTGGTA 59.097 55.000 0.00 0.00 34.23 3.25
2690 2916 2.307686 TCGGCTTTTCCTCCTGGTAAAT 59.692 45.455 0.00 0.00 33.24 1.40
2698 2924 0.251916 CTCCTGGTAAATGGTCGCCA 59.748 55.000 1.01 1.01 38.19 5.69
2707 2933 4.578928 GGTAAATGGTCGCCAGATAACATT 59.421 41.667 4.90 0.00 36.75 2.71
2730 2965 3.459598 AGGGCTAATCTACATGGCTTCAA 59.540 43.478 0.00 0.00 0.00 2.69
2738 2973 4.633175 TCTACATGGCTTCAACGTGTAAA 58.367 39.130 0.00 0.00 39.17 2.01
2748 2983 5.229260 GCTTCAACGTGTAAAAAGTGAAAGG 59.771 40.000 0.00 0.00 0.00 3.11
2749 2984 5.883503 TCAACGTGTAAAAAGTGAAAGGT 57.116 34.783 0.00 0.00 0.00 3.50
2786 3021 3.564225 AGGACAACGTTTGGATTCTCAAC 59.436 43.478 0.00 0.00 34.12 3.18
2798 3033 5.922053 TGGATTCTCAACATCAATCTCGAT 58.078 37.500 0.00 0.00 0.00 3.59
2803 3038 5.910614 TCTCAACATCAATCTCGATCACAT 58.089 37.500 0.00 0.00 0.00 3.21
2804 3039 7.042797 TCTCAACATCAATCTCGATCACATA 57.957 36.000 0.00 0.00 0.00 2.29
2805 3040 7.144000 TCTCAACATCAATCTCGATCACATAG 58.856 38.462 0.00 0.00 0.00 2.23
2828 3063 3.192844 CCTCTAAGCAACACCTACGAGAA 59.807 47.826 0.00 0.00 0.00 2.87
2833 3068 4.002906 AGCAACACCTACGAGAATTTGA 57.997 40.909 0.00 0.00 0.00 2.69
2839 3074 3.056107 CACCTACGAGAATTTGACTCCCA 60.056 47.826 0.00 0.00 0.00 4.37
2844 3079 2.098117 CGAGAATTTGACTCCCATTGGC 59.902 50.000 0.00 0.00 0.00 4.52
2865 3100 0.389757 GCTCCTTCGGGATACTCACC 59.610 60.000 0.00 0.00 44.11 4.02
2869 3104 2.764572 TCCTTCGGGATACTCACCTTTC 59.235 50.000 0.00 0.00 39.58 2.62
2892 3127 3.881688 GGAGGATGTTGAGGATGACATTG 59.118 47.826 0.00 0.00 36.67 2.82
2897 3132 2.553602 TGTTGAGGATGACATTGTGTGC 59.446 45.455 0.00 0.00 0.00 4.57
2898 3133 1.825090 TGAGGATGACATTGTGTGCC 58.175 50.000 0.00 0.00 0.00 5.01
2899 3134 1.073603 TGAGGATGACATTGTGTGCCA 59.926 47.619 0.00 0.00 0.00 4.92
2900 3135 2.291089 TGAGGATGACATTGTGTGCCAT 60.291 45.455 0.00 0.00 0.00 4.40
2929 3164 1.002502 GCGGGCTTTACTCCTTGGT 60.003 57.895 0.00 0.00 0.00 3.67
2935 3170 2.288825 GGCTTTACTCCTTGGTTTTGGC 60.289 50.000 0.00 0.00 0.00 4.52
2936 3171 2.607038 GCTTTACTCCTTGGTTTTGGCG 60.607 50.000 0.00 0.00 0.00 5.69
2971 3206 1.067212 CATAGGGTCCACGAGCACTAC 59.933 57.143 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.549170 GAGACATGTACGGGTTGAGGT 59.451 52.381 0.00 0.00 0.00 3.85
13 14 3.973206 AATGAGACATGTACGGGTTGA 57.027 42.857 0.00 0.00 0.00 3.18
14 15 6.677781 AAATAATGAGACATGTACGGGTTG 57.322 37.500 0.00 0.00 0.00 3.77
40 41 1.538849 GGTATAGTACGGGTTTGGGCG 60.539 57.143 0.00 0.00 0.00 6.13
68 76 7.614192 ACGGATATGAAAACTATTTGAAACCCT 59.386 33.333 0.00 0.00 0.00 4.34
80 88 4.950205 ATCGGGTACGGATATGAAAACT 57.050 40.909 0.00 0.00 46.59 2.66
135 143 0.400815 ATTGGGTAGGGTGGCCGATA 60.401 55.000 0.00 0.00 0.00 2.92
136 144 1.286305 AATTGGGTAGGGTGGCCGAT 61.286 55.000 0.00 0.00 0.00 4.18
137 145 1.917336 GAATTGGGTAGGGTGGCCGA 61.917 60.000 0.00 0.00 0.00 5.54
138 146 1.453197 GAATTGGGTAGGGTGGCCG 60.453 63.158 0.00 0.00 0.00 6.13
139 147 0.683179 GTGAATTGGGTAGGGTGGCC 60.683 60.000 0.00 0.00 0.00 5.36
140 148 0.039035 TGTGAATTGGGTAGGGTGGC 59.961 55.000 0.00 0.00 0.00 5.01
146 157 4.389374 ACAGTGAAGTGTGAATTGGGTAG 58.611 43.478 0.00 0.00 0.00 3.18
236 272 4.885325 AGCAAATCATCATCTGTATGTGCA 59.115 37.500 0.00 0.00 34.50 4.57
244 282 4.023739 TCGCAAAGCAAATCATCATCTG 57.976 40.909 0.00 0.00 0.00 2.90
258 296 9.903682 ATATCATCTTTTTATTCCATCGCAAAG 57.096 29.630 0.00 0.00 0.00 2.77
313 352 7.250569 ACATTGTTTAGTGCAATCTATTTCGG 58.749 34.615 0.00 0.00 34.68 4.30
446 504 8.773216 AGGAGCTTCAGAAGTACCTTAAATAAT 58.227 33.333 18.38 2.24 34.41 1.28
452 510 7.416438 CGAAATAGGAGCTTCAGAAGTACCTTA 60.416 40.741 24.74 15.75 37.37 2.69
465 523 9.956720 CATTTGATTATTTCGAAATAGGAGCTT 57.043 29.630 25.17 11.72 32.87 3.74
559 625 4.510205 CCACCCAAAATTCTCTCCCCTTAA 60.510 45.833 0.00 0.00 0.00 1.85
571 643 3.106827 CCATTAGCCTCCACCCAAAATT 58.893 45.455 0.00 0.00 0.00 1.82
581 653 2.683362 GCTAACACAACCATTAGCCTCC 59.317 50.000 4.94 0.00 44.97 4.30
589 661 2.275466 ACCCTAGGCTAACACAACCAT 58.725 47.619 2.05 0.00 0.00 3.55
590 662 1.737199 ACCCTAGGCTAACACAACCA 58.263 50.000 2.05 0.00 0.00 3.67
596 668 2.775384 CCCATTGTACCCTAGGCTAACA 59.225 50.000 2.05 4.07 0.00 2.41
608 680 4.024670 ACACCTCTACTCTCCCATTGTAC 58.975 47.826 0.00 0.00 0.00 2.90
617 689 1.671845 CCGTGCTACACCTCTACTCTC 59.328 57.143 0.00 0.00 0.00 3.20
618 690 1.752683 CCGTGCTACACCTCTACTCT 58.247 55.000 0.00 0.00 0.00 3.24
619 691 0.100861 GCCGTGCTACACCTCTACTC 59.899 60.000 0.00 0.00 0.00 2.59
620 692 0.323542 AGCCGTGCTACACCTCTACT 60.324 55.000 0.00 0.00 36.99 2.57
621 693 0.531200 AAGCCGTGCTACACCTCTAC 59.469 55.000 0.00 0.00 38.25 2.59
622 694 0.815734 GAAGCCGTGCTACACCTCTA 59.184 55.000 0.00 0.00 38.25 2.43
623 695 0.900647 AGAAGCCGTGCTACACCTCT 60.901 55.000 0.00 0.00 38.25 3.69
624 696 0.037232 AAGAAGCCGTGCTACACCTC 60.037 55.000 0.00 0.00 38.25 3.85
625 697 0.320771 CAAGAAGCCGTGCTACACCT 60.321 55.000 0.00 0.00 38.25 4.00
626 698 1.298859 CCAAGAAGCCGTGCTACACC 61.299 60.000 0.00 0.00 38.25 4.16
627 699 1.912371 GCCAAGAAGCCGTGCTACAC 61.912 60.000 0.00 0.00 38.25 2.90
628 700 1.671054 GCCAAGAAGCCGTGCTACA 60.671 57.895 0.00 0.00 38.25 2.74
629 701 0.108329 TAGCCAAGAAGCCGTGCTAC 60.108 55.000 0.00 0.00 38.25 3.58
630 702 0.108329 GTAGCCAAGAAGCCGTGCTA 60.108 55.000 0.00 0.00 38.25 3.49
631 703 1.376037 GTAGCCAAGAAGCCGTGCT 60.376 57.895 0.00 0.00 42.56 4.40
632 704 1.639298 CTGTAGCCAAGAAGCCGTGC 61.639 60.000 0.00 0.00 0.00 5.34
633 705 0.037326 TCTGTAGCCAAGAAGCCGTG 60.037 55.000 0.00 0.00 0.00 4.94
634 706 0.905357 ATCTGTAGCCAAGAAGCCGT 59.095 50.000 0.00 0.00 0.00 5.68
635 707 2.029838 AATCTGTAGCCAAGAAGCCG 57.970 50.000 0.00 0.00 0.00 5.52
636 708 2.159324 GCAAATCTGTAGCCAAGAAGCC 60.159 50.000 0.00 0.00 0.00 4.35
637 709 3.142404 GCAAATCTGTAGCCAAGAAGC 57.858 47.619 0.00 0.00 0.00 3.86
645 717 1.748879 TGGCGGGCAAATCTGTAGC 60.749 57.895 0.01 0.00 0.00 3.58
646 718 1.376609 GGTGGCGGGCAAATCTGTAG 61.377 60.000 5.57 0.00 0.00 2.74
647 719 1.377987 GGTGGCGGGCAAATCTGTA 60.378 57.895 5.57 0.00 0.00 2.74
648 720 2.676471 GGTGGCGGGCAAATCTGT 60.676 61.111 5.57 0.00 0.00 3.41
649 721 3.451894 GGGTGGCGGGCAAATCTG 61.452 66.667 5.57 0.00 0.00 2.90
650 722 3.944250 CTGGGTGGCGGGCAAATCT 62.944 63.158 5.57 0.00 0.00 2.40
651 723 3.451894 CTGGGTGGCGGGCAAATC 61.452 66.667 5.57 0.00 0.00 2.17
665 737 1.483415 CCCATCATTTTTGAGCCCTGG 59.517 52.381 0.00 0.00 0.00 4.45
692 764 2.935481 TTCCCCAGGTGAGCCAGG 60.935 66.667 0.00 0.00 40.78 4.45
710 782 4.504461 TCGCTTGATTTCTTCTCGCTATTC 59.496 41.667 0.00 0.00 0.00 1.75
712 784 4.046938 TCGCTTGATTTCTTCTCGCTAT 57.953 40.909 0.00 0.00 0.00 2.97
713 785 3.439293 CTCGCTTGATTTCTTCTCGCTA 58.561 45.455 0.00 0.00 0.00 4.26
714 786 2.266554 CTCGCTTGATTTCTTCTCGCT 58.733 47.619 0.00 0.00 0.00 4.93
765 837 4.308458 TGTCCTCGTGGTTGGCCG 62.308 66.667 2.99 0.00 37.67 6.13
775 847 0.747255 ATCAATCTCCCGTGTCCTCG 59.253 55.000 0.00 0.00 0.00 4.63
909 1007 2.531942 GGAGGGGGACAGGGTGTT 60.532 66.667 0.00 0.00 0.00 3.32
959 1084 4.042398 GTGCGACTGGGCATATATATACG 58.958 47.826 0.00 0.00 45.99 3.06
997 1122 2.438434 CGTGGTGGGAGGGAATGC 60.438 66.667 0.00 0.00 0.00 3.56
1156 1296 3.997064 CTCTTCCCGCTGCCGAGTG 62.997 68.421 0.00 0.00 36.29 3.51
1157 1297 3.764466 CTCTTCCCGCTGCCGAGT 61.764 66.667 0.00 0.00 36.29 4.18
1303 1452 3.741476 CCACCAGCGCCTTCTTGC 61.741 66.667 2.29 0.00 0.00 4.01
1606 1764 8.370266 TCTTTGAAATGGAAATTGGAGATGAT 57.630 30.769 0.00 0.00 0.00 2.45
1633 1797 4.696877 TCAGTGATGCAGTAGGATTTTGTG 59.303 41.667 0.00 0.00 0.00 3.33
1662 1827 8.424918 CCAGGATGTCAGTTATTCAGTTATACT 58.575 37.037 0.00 0.00 0.00 2.12
1663 1828 8.204836 ACCAGGATGTCAGTTATTCAGTTATAC 58.795 37.037 0.00 0.00 0.00 1.47
1799 1966 6.294473 AGCTGAAATCTCACAGAAGAGAAAA 58.706 36.000 0.00 0.00 46.81 2.29
1829 1999 0.399454 ACATGAGCAGCCACTGAAGT 59.601 50.000 0.00 0.00 32.44 3.01
1831 2001 1.241165 CAACATGAGCAGCCACTGAA 58.759 50.000 0.00 0.00 32.44 3.02
1835 2005 3.357919 TGCAACATGAGCAGCCAC 58.642 55.556 12.35 0.00 37.02 5.01
1905 2084 5.066117 GGGAGAGAAAACGGGAAAATGATAC 59.934 44.000 0.00 0.00 0.00 2.24
1931 2110 2.303537 CCGCAACATGTTTACACGTTC 58.696 47.619 8.77 0.00 28.99 3.95
1970 2149 5.036117 ACAACTGACACTGTATTCTGGTT 57.964 39.130 0.00 0.00 0.00 3.67
1995 2174 4.161754 CCCTTTTCGATAGGGTAGACAGTT 59.838 45.833 20.07 0.00 46.16 3.16
2010 2189 2.558359 AGAGTTGAATTGGCCCTTTTCG 59.442 45.455 0.00 0.00 0.00 3.46
2028 2207 4.733972 TCGATCGAACATAGTAGCAGAG 57.266 45.455 16.99 0.00 0.00 3.35
2033 2212 5.085390 CAGAGCATCGATCGAACATAGTAG 58.915 45.833 23.50 4.77 42.67 2.57
2034 2213 4.515567 ACAGAGCATCGATCGAACATAGTA 59.484 41.667 23.50 0.00 42.67 1.82
2035 2214 3.316588 ACAGAGCATCGATCGAACATAGT 59.683 43.478 23.50 13.45 42.67 2.12
2036 2215 3.894920 ACAGAGCATCGATCGAACATAG 58.105 45.455 23.50 12.82 42.67 2.23
2047 2226 3.567530 GATCTCATCTGACAGAGCATCG 58.432 50.000 11.52 0.00 42.67 3.84
2048 2227 3.575256 AGGATCTCATCTGACAGAGCATC 59.425 47.826 11.52 8.75 0.00 3.91
2108 2287 2.413142 GCACTGGCCTGCTTCCATC 61.413 63.158 9.95 0.00 34.06 3.51
2120 2299 0.957395 ACAAATCGAGCCTGCACTGG 60.957 55.000 0.00 0.00 0.00 4.00
2122 2301 2.472695 TTACAAATCGAGCCTGCACT 57.527 45.000 0.00 0.00 0.00 4.40
2124 2303 1.468520 GCTTTACAAATCGAGCCTGCA 59.531 47.619 0.00 0.00 0.00 4.41
2125 2304 2.179949 GCTTTACAAATCGAGCCTGC 57.820 50.000 0.00 0.00 0.00 4.85
2273 2457 0.613260 CCACACCGATCCTCCTTTCA 59.387 55.000 0.00 0.00 0.00 2.69
2326 2510 1.458398 CCAACAGTGTCACACCACAA 58.542 50.000 3.66 0.00 37.82 3.33
2329 2522 0.329931 AACCCAACAGTGTCACACCA 59.670 50.000 3.66 0.00 34.49 4.17
2331 2524 1.134175 CCAAACCCAACAGTGTCACAC 59.866 52.381 0.00 0.00 34.10 3.82
2339 2532 2.695147 AGCTTTCTTCCAAACCCAACAG 59.305 45.455 0.00 0.00 0.00 3.16
2340 2533 2.745968 AGCTTTCTTCCAAACCCAACA 58.254 42.857 0.00 0.00 0.00 3.33
2371 2564 9.914131 TCTATCTACTATGGTTGATCAAAATCG 57.086 33.333 10.35 6.10 38.46 3.34
2377 2570 9.421399 TCTTTGTCTATCTACTATGGTTGATCA 57.579 33.333 9.27 0.00 38.46 2.92
2385 2578 7.799447 GCGTACTGTCTTTGTCTATCTACTATG 59.201 40.741 0.00 0.00 0.00 2.23
2398 2593 1.878953 AAGGGTGCGTACTGTCTTTG 58.121 50.000 3.01 0.00 0.00 2.77
2424 2619 1.214305 TCCCATCCAACCAAGGGGAG 61.214 60.000 0.00 0.00 42.75 4.30
2454 2674 3.442273 CCTAGATTAGAGAGGCGATGTCC 59.558 52.174 0.00 0.00 0.00 4.02
2464 2684 5.478679 GGCTATTGCAGTCCTAGATTAGAGA 59.521 44.000 0.66 0.00 41.91 3.10
2466 2686 5.147767 TGGCTATTGCAGTCCTAGATTAGA 58.852 41.667 0.66 0.00 41.91 2.10
2467 2687 5.474578 TGGCTATTGCAGTCCTAGATTAG 57.525 43.478 0.66 0.00 41.91 1.73
2501 2721 2.442643 AAATGCCATCCCCGCCAG 60.443 61.111 0.00 0.00 0.00 4.85
2502 2722 2.759149 CAAATGCCATCCCCGCCA 60.759 61.111 0.00 0.00 0.00 5.69
2506 2726 0.173255 CGTTCACAAATGCCATCCCC 59.827 55.000 0.00 0.00 0.00 4.81
2507 2727 0.173255 CCGTTCACAAATGCCATCCC 59.827 55.000 0.00 0.00 0.00 3.85
2525 2745 2.200170 CTAAAACTGCCAGGCACGCC 62.200 60.000 11.22 0.00 33.79 5.68
2531 2751 5.531287 ACACTAAAAGTCTAAAACTGCCAGG 59.469 40.000 0.00 0.00 38.58 4.45
2532 2752 6.619801 ACACTAAAAGTCTAAAACTGCCAG 57.380 37.500 0.00 0.00 38.58 4.85
2538 2758 7.337480 TCCCCAAACACTAAAAGTCTAAAAC 57.663 36.000 0.00 0.00 0.00 2.43
2539 2759 7.957992 TTCCCCAAACACTAAAAGTCTAAAA 57.042 32.000 0.00 0.00 0.00 1.52
2540 2760 7.780745 TCATTCCCCAAACACTAAAAGTCTAAA 59.219 33.333 0.00 0.00 0.00 1.85
2541 2761 7.229907 GTCATTCCCCAAACACTAAAAGTCTAA 59.770 37.037 0.00 0.00 0.00 2.10
2542 2762 6.713450 GTCATTCCCCAAACACTAAAAGTCTA 59.287 38.462 0.00 0.00 0.00 2.59
2543 2763 5.535030 GTCATTCCCCAAACACTAAAAGTCT 59.465 40.000 0.00 0.00 0.00 3.24
2544 2764 5.300792 TGTCATTCCCCAAACACTAAAAGTC 59.699 40.000 0.00 0.00 0.00 3.01
2545 2765 5.205056 TGTCATTCCCCAAACACTAAAAGT 58.795 37.500 0.00 0.00 0.00 2.66
2546 2766 5.782893 TGTCATTCCCCAAACACTAAAAG 57.217 39.130 0.00 0.00 0.00 2.27
2558 2778 1.831106 GGGGTCAAAATGTCATTCCCC 59.169 52.381 18.74 18.74 44.88 4.81
2559 2779 2.534990 TGGGGTCAAAATGTCATTCCC 58.465 47.619 10.38 10.38 0.00 3.97
2576 2796 2.352342 GCGAAATGCCATGATTTTTGGG 59.648 45.455 0.00 0.00 37.76 4.12
2577 2797 3.661758 GCGAAATGCCATGATTTTTGG 57.338 42.857 0.00 0.00 37.76 3.28
2613 2833 5.361427 TGACGGTGACAGTTTTCAGATAAA 58.639 37.500 0.00 0.00 0.00 1.40
2614 2834 4.951254 TGACGGTGACAGTTTTCAGATAA 58.049 39.130 0.00 0.00 0.00 1.75
2621 2841 1.485066 AGACCTGACGGTGACAGTTTT 59.515 47.619 0.00 0.00 45.73 2.43
2628 2848 1.627864 TGATCAAGACCTGACGGTGA 58.372 50.000 0.00 0.00 45.73 4.02
2636 2856 2.159043 CGTAGCCACATGATCAAGACCT 60.159 50.000 4.68 0.70 0.00 3.85
2638 2858 3.119291 CTCGTAGCCACATGATCAAGAC 58.881 50.000 4.68 0.00 0.00 3.01
2669 2889 1.354101 TTACCAGGAGGAAAAGCCGA 58.646 50.000 0.00 0.00 43.43 5.54
2671 2891 2.760650 CCATTTACCAGGAGGAAAAGCC 59.239 50.000 0.00 0.00 38.69 4.35
2686 2906 5.995282 CCTAATGTTATCTGGCGACCATTTA 59.005 40.000 0.00 0.00 30.82 1.40
2687 2907 4.821805 CCTAATGTTATCTGGCGACCATTT 59.178 41.667 0.00 0.00 30.82 2.32
2690 2916 2.104111 CCCTAATGTTATCTGGCGACCA 59.896 50.000 0.00 0.00 0.00 4.02
2698 2924 8.543774 CCATGTAGATTAGCCCTAATGTTATCT 58.456 37.037 5.33 0.52 36.02 1.98
2700 2926 7.037297 AGCCATGTAGATTAGCCCTAATGTTAT 60.037 37.037 5.33 0.00 36.02 1.89
2707 2933 4.231273 TGAAGCCATGTAGATTAGCCCTA 58.769 43.478 0.00 0.00 0.00 3.53
2730 2965 4.392754 ACGAACCTTTCACTTTTTACACGT 59.607 37.500 0.00 0.00 0.00 4.49
2748 2983 2.940410 TGTCCTTCAAAGGTTCACGAAC 59.060 45.455 8.60 1.12 46.54 3.95
2749 2984 3.269538 TGTCCTTCAAAGGTTCACGAA 57.730 42.857 8.60 0.00 46.54 3.85
2765 3000 3.314080 TGTTGAGAATCCAAACGTTGTCC 59.686 43.478 0.00 0.00 0.00 4.02
2786 3021 4.818642 AGGCTATGTGATCGAGATTGATG 58.181 43.478 0.00 0.00 0.00 3.07
2798 3033 3.369471 GGTGTTGCTTAGAGGCTATGTGA 60.369 47.826 0.00 0.00 0.00 3.58
2803 3038 2.426024 CGTAGGTGTTGCTTAGAGGCTA 59.574 50.000 0.00 0.00 0.00 3.93
2804 3039 1.204941 CGTAGGTGTTGCTTAGAGGCT 59.795 52.381 0.00 0.00 0.00 4.58
2805 3040 1.203994 TCGTAGGTGTTGCTTAGAGGC 59.796 52.381 0.00 0.00 0.00 4.70
2828 3063 1.188863 GCAGCCAATGGGAGTCAAAT 58.811 50.000 0.00 0.00 35.59 2.32
2833 3068 1.504275 AAGGAGCAGCCAATGGGAGT 61.504 55.000 0.00 0.00 40.02 3.85
2865 3100 3.118629 TCATCCTCAACATCCTCCGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
2869 3104 1.482182 TGTCATCCTCAACATCCTCCG 59.518 52.381 0.00 0.00 0.00 4.63
2897 3132 2.180204 CCCGCTCGCCTTGTTATGG 61.180 63.158 0.00 0.00 0.00 2.74
2898 3133 2.823829 GCCCGCTCGCCTTGTTATG 61.824 63.158 0.00 0.00 0.00 1.90
2899 3134 2.513897 GCCCGCTCGCCTTGTTAT 60.514 61.111 0.00 0.00 0.00 1.89
2900 3135 2.741486 AAAGCCCGCTCGCCTTGTTA 62.741 55.000 0.00 0.00 0.00 2.41
2908 3143 1.084370 CAAGGAGTAAAGCCCGCTCG 61.084 60.000 0.00 0.00 0.00 5.03
2912 3147 1.905637 AAACCAAGGAGTAAAGCCCG 58.094 50.000 0.00 0.00 0.00 6.13
2929 3164 2.941453 TTGTGCTTTGTACGCCAAAA 57.059 40.000 2.93 0.00 42.31 2.44
2935 3170 4.394920 ACCCTATGAATTGTGCTTTGTACG 59.605 41.667 0.00 0.00 0.00 3.67
2936 3171 5.163652 GGACCCTATGAATTGTGCTTTGTAC 60.164 44.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.