Multiple sequence alignment - TraesCS6A01G371000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G371000 chr6A 100.000 2333 0 0 1 2333 595562676 595565008 0.000000e+00 4309.0
1 TraesCS6A01G371000 chr6A 87.246 345 29 5 996 1337 595578752 595579084 1.690000e-101 379.0
2 TraesCS6A01G371000 chr6A 84.561 285 16 9 656 940 595578477 595578733 8.270000e-65 257.0
3 TraesCS6A01G371000 chr6A 82.353 68 8 3 158 223 479994688 479994753 3.240000e-04 56.5
4 TraesCS6A01G371000 chr6B 89.036 985 54 28 379 1340 682536551 682537504 0.000000e+00 1171.0
5 TraesCS6A01G371000 chr6B 85.837 233 31 2 157 387 682536286 682536518 1.790000e-61 246.0
6 TraesCS6A01G371000 chr6B 90.244 164 13 1 1 164 682533598 682533758 6.530000e-51 211.0
7 TraesCS6A01G371000 chr6B 94.783 115 4 2 1879 1992 197245673 197245560 6.620000e-41 178.0
8 TraesCS6A01G371000 chr6B 87.417 151 14 3 1846 1992 503547914 503547765 3.990000e-38 169.0
9 TraesCS6A01G371000 chr6B 89.394 132 10 4 1863 1993 136452697 136452569 1.850000e-36 163.0
10 TraesCS6A01G371000 chr6D 94.461 343 13 2 437 779 450080405 450080741 7.390000e-145 523.0
11 TraesCS6A01G371000 chr6D 90.476 336 29 1 1 336 450080046 450080378 7.650000e-120 440.0
12 TraesCS6A01G371000 chr6D 82.466 519 55 15 829 1340 450080754 450081243 2.770000e-114 422.0
13 TraesCS6A01G371000 chr6D 81.469 572 47 36 1154 1696 450082476 450083017 4.640000e-112 414.0
14 TraesCS6A01G371000 chr6D 79.167 144 24 5 2141 2279 135166809 135166951 6.860000e-16 95.3
15 TraesCS6A01G371000 chr6D 81.905 105 15 4 2137 2238 393167526 393167629 4.130000e-13 86.1
16 TraesCS6A01G371000 chr3D 84.103 195 26 5 2142 2333 47757860 47757668 1.420000e-42 183.0
17 TraesCS6A01G371000 chr3D 91.000 100 7 1 1781 1880 532994178 532994081 1.450000e-27 134.0
18 TraesCS6A01G371000 chr3D 80.473 169 33 0 208 376 553903936 553903768 1.880000e-26 130.0
19 TraesCS6A01G371000 chr3D 90.000 100 8 1 1781 1880 177818769 177818866 6.770000e-26 128.0
20 TraesCS6A01G371000 chr3D 84.615 104 13 3 2137 2237 508584620 508584723 1.480000e-17 100.0
21 TraesCS6A01G371000 chr3D 81.553 103 15 4 2137 2236 145647112 145647213 5.340000e-12 82.4
22 TraesCS6A01G371000 chr3B 92.063 126 10 0 1877 2002 744851756 744851631 6.620000e-41 178.0
23 TraesCS6A01G371000 chr5B 93.913 115 7 0 1879 1993 9643422 9643308 8.570000e-40 174.0
24 TraesCS6A01G371000 chr5B 91.200 125 9 2 1886 2008 599617648 599617772 3.990000e-38 169.0
25 TraesCS6A01G371000 chr5B 80.822 146 19 9 2141 2279 326993464 326993321 3.170000e-19 106.0
26 TraesCS6A01G371000 chr2A 93.220 118 8 0 1886 2003 635580059 635579942 8.570000e-40 174.0
27 TraesCS6A01G371000 chr2A 90.769 130 12 0 1863 1992 707748435 707748306 8.570000e-40 174.0
28 TraesCS6A01G371000 chr2A 90.196 102 8 1 1779 1880 611763560 611763461 5.230000e-27 132.0
29 TraesCS6A01G371000 chr5D 94.595 111 6 0 1883 1993 339105177 339105067 3.080000e-39 172.0
30 TraesCS6A01G371000 chr5D 88.571 105 10 2 1782 1886 549469911 549469809 2.430000e-25 126.0
31 TraesCS6A01G371000 chr5D 81.905 105 15 4 2137 2238 297236826 297236929 4.130000e-13 86.1
32 TraesCS6A01G371000 chr1A 83.957 187 20 8 2141 2321 8252094 8252276 1.110000e-38 171.0
33 TraesCS6A01G371000 chr1A 89.000 100 9 1 1781 1880 340015001 340015098 3.150000e-24 122.0
34 TraesCS6A01G371000 chr2B 91.176 102 7 1 1780 1881 768661027 768661126 1.120000e-28 137.0
35 TraesCS6A01G371000 chr2B 81.250 144 22 5 2141 2279 256102532 256102675 6.810000e-21 111.0
36 TraesCS6A01G371000 chr4D 90.099 101 8 1 1781 1881 503153942 503153844 1.880000e-26 130.0
37 TraesCS6A01G371000 chr4D 89.216 102 9 1 1782 1883 494042468 494042369 2.430000e-25 126.0
38 TraesCS6A01G371000 chr1B 90.000 100 8 1 1781 1880 572529456 572529359 6.770000e-26 128.0
39 TraesCS6A01G371000 chr3A 84.615 130 16 4 2138 2263 641321466 641321595 2.430000e-25 126.0
40 TraesCS6A01G371000 chr7D 79.747 158 21 10 2128 2278 227286389 227286236 1.140000e-18 104.0
41 TraesCS6A01G371000 chr7D 96.875 32 1 0 2138 2169 1469381 1469412 1.000000e-03 54.7
42 TraesCS6A01G371000 chr1D 76.585 205 33 14 2127 2322 427870122 427870320 5.310000e-17 99.0
43 TraesCS6A01G371000 chr2D 80.952 126 21 3 2141 2263 303699626 303699501 1.910000e-16 97.1
44 TraesCS6A01G371000 chr4B 78.472 144 26 5 2141 2279 156842713 156842570 3.190000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G371000 chr6A 595562676 595565008 2332 False 4309.000000 4309 100.000000 1 2333 1 chr6A.!!$F2 2332
1 TraesCS6A01G371000 chr6A 595578477 595579084 607 False 318.000000 379 85.903500 656 1337 2 chr6A.!!$F3 681
2 TraesCS6A01G371000 chr6B 682533598 682537504 3906 False 542.666667 1171 88.372333 1 1340 3 chr6B.!!$F1 1339
3 TraesCS6A01G371000 chr6D 450080046 450083017 2971 False 449.750000 523 87.218000 1 1696 4 chr6D.!!$F3 1695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 3585 0.400975 AGCTCCATCTGCATCCATCC 59.599 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 5937 0.033796 TCCGAACGGAGGGAGTATGT 60.034 55.0 12.04 0.0 39.76 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 6.127338 TGGATGGTGTAGTGAAGAGAGTATTG 60.127 42.308 0.00 0.00 0.00 1.90
127 128 7.504238 AGTGAAGAGAGTATTGGTGGTAGATAG 59.496 40.741 0.00 0.00 0.00 2.08
128 129 7.285858 GTGAAGAGAGTATTGGTGGTAGATAGT 59.714 40.741 0.00 0.00 0.00 2.12
129 130 8.500238 TGAAGAGAGTATTGGTGGTAGATAGTA 58.500 37.037 0.00 0.00 0.00 1.82
158 159 9.440761 ACTCCTAATAGAAGACATTATTGAGGT 57.559 33.333 0.00 0.00 0.00 3.85
188 2724 6.613153 ACCTATGATTAGATGGTTAGGAGC 57.387 41.667 0.00 0.00 32.38 4.70
191 2727 7.046652 CCTATGATTAGATGGTTAGGAGCATG 58.953 42.308 0.00 0.00 43.64 4.06
194 2730 5.843969 TGATTAGATGGTTAGGAGCATGGTA 59.156 40.000 0.00 0.00 43.64 3.25
201 2737 5.216622 TGGTTAGGAGCATGGTAGTATCTT 58.783 41.667 0.00 0.00 0.00 2.40
211 2747 2.024655 TGGTAGTATCTTCGGTCCACCT 60.025 50.000 0.00 0.00 0.00 4.00
283 2820 3.973206 TCAGGTTTATCGGTGATGTGT 57.027 42.857 0.00 0.00 0.00 3.72
291 2828 3.953712 ATCGGTGATGTGTGTTCAGTA 57.046 42.857 0.00 0.00 0.00 2.74
301 2838 3.958147 TGTGTGTTCAGTAGGAGAAGACA 59.042 43.478 2.33 2.33 44.00 3.41
307 2844 7.178451 TGTGTTCAGTAGGAGAAGACATTCATA 59.822 37.037 2.33 0.00 42.18 2.15
316 2853 8.183104 AGGAGAAGACATTCATATCGATTACA 57.817 34.615 1.71 0.00 37.94 2.41
339 2876 2.034305 AGACGTCTGTAGCAACTTCGTT 59.966 45.455 19.30 0.00 31.39 3.85
358 2895 8.950210 ACTTCGTTAATCTCAAAATGATGTGAT 58.050 29.630 0.00 0.00 35.63 3.06
359 2896 9.218359 CTTCGTTAATCTCAAAATGATGTGATG 57.782 33.333 0.00 0.00 34.67 3.07
367 2904 4.768448 TCAAAATGATGTGATGGCTCAGTT 59.232 37.500 0.00 0.00 30.18 3.16
376 2913 2.562738 TGATGGCTCAGTTTCTCGAAGA 59.437 45.455 0.00 0.00 0.00 2.87
377 2914 5.437072 GTGATGGCTCAGTTTCTCGAAGAG 61.437 50.000 0.00 0.00 44.22 2.85
403 2982 2.456989 AGGAACGAACGTATATGTGCG 58.543 47.619 21.59 21.59 46.53 5.34
433 3012 4.177026 GAGTGTCAGCTGTACCATGTTAG 58.823 47.826 14.67 0.00 0.00 2.34
440 3021 7.172532 TGTCAGCTGTACCATGTTAGTAAAAAG 59.827 37.037 14.67 0.00 0.00 2.27
751 3338 7.084486 CCCACTAATTAAGCAGAAAACAAGAC 58.916 38.462 0.00 0.00 0.00 3.01
797 3384 4.367023 TGGTCCGCTGTACCACGC 62.367 66.667 0.00 0.00 42.10 5.34
816 3404 0.854037 CGCGCTAGTATCTCGATCGC 60.854 60.000 11.09 0.00 38.00 4.58
819 3407 0.797542 GCTAGTATCTCGATCGCGGT 59.202 55.000 11.09 2.36 38.28 5.68
862 3450 4.207281 CCGCCGCTGCTAGTGCTA 62.207 66.667 0.00 0.00 40.48 3.49
957 3548 1.342174 GTCGGGTGTACTCAACTTCCA 59.658 52.381 0.00 0.00 0.00 3.53
987 3585 0.400975 AGCTCCATCTGCATCCATCC 59.599 55.000 0.00 0.00 0.00 3.51
1148 3746 2.288825 TGTACTTCAAGAACTGCCTCCG 60.289 50.000 0.00 0.00 0.00 4.63
1174 3775 1.667191 CACTGCGAGAAGTGCTGCT 60.667 57.895 0.00 0.00 41.05 4.24
1175 3776 1.070445 ACTGCGAGAAGTGCTGCTT 59.930 52.632 0.00 0.00 40.76 3.91
1242 3843 4.862092 CTGATCGAGTGCGCGCCT 62.862 66.667 30.77 24.62 37.46 5.52
1257 3858 4.275508 CCTGGCCACCACTGCAGT 62.276 66.667 15.25 15.25 0.00 4.40
1353 5372 2.268920 GCCGTGGCCTCTTCATCA 59.731 61.111 3.32 0.00 34.56 3.07
1354 5373 2.109126 GCCGTGGCCTCTTCATCAC 61.109 63.158 3.32 0.00 34.56 3.06
1355 5374 3.786101 CGTGGCCTCTTCATCACG 58.214 61.111 3.32 0.00 44.98 4.35
1356 5375 1.811266 CGTGGCCTCTTCATCACGG 60.811 63.158 3.32 0.00 46.05 4.94
1357 5376 1.450312 GTGGCCTCTTCATCACGGG 60.450 63.158 3.32 0.00 0.00 5.28
1358 5377 1.612146 TGGCCTCTTCATCACGGGA 60.612 57.895 3.32 0.00 0.00 5.14
1359 5378 1.153349 GGCCTCTTCATCACGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
1388 5417 7.071321 ACCTTATTAGCTGCTTCCTACTACAAT 59.929 37.037 7.79 0.38 0.00 2.71
1389 5418 7.386299 CCTTATTAGCTGCTTCCTACTACAATG 59.614 40.741 7.79 0.00 0.00 2.82
1390 5419 2.911484 AGCTGCTTCCTACTACAATGC 58.089 47.619 0.00 0.00 0.00 3.56
1391 5420 2.237143 AGCTGCTTCCTACTACAATGCA 59.763 45.455 0.00 0.00 0.00 3.96
1392 5421 3.009723 GCTGCTTCCTACTACAATGCAA 58.990 45.455 0.00 0.00 0.00 4.08
1395 5424 5.414789 TGCTTCCTACTACAATGCAAGTA 57.585 39.130 0.00 0.00 0.00 2.24
1406 5435 7.024171 ACTACAATGCAAGTATATCGATCTCG 58.976 38.462 0.00 0.00 41.45 4.04
1408 5437 5.631096 ACAATGCAAGTATATCGATCTCGTG 59.369 40.000 0.00 3.76 40.80 4.35
1410 5439 5.183014 TGCAAGTATATCGATCTCGTGTT 57.817 39.130 0.00 0.00 40.80 3.32
1415 5466 5.511571 AGTATATCGATCTCGTGTTGTGTG 58.488 41.667 0.00 0.00 40.80 3.82
1423 5474 1.937223 CTCGTGTTGTGTGCCTGTTTA 59.063 47.619 0.00 0.00 0.00 2.01
1438 5489 3.303791 CCTGTTTAGTTTGTTCCGACTGC 60.304 47.826 0.00 0.00 0.00 4.40
1464 5519 6.705825 GTGTGCTGGTTGTGTATGATATGATA 59.294 38.462 0.00 0.00 0.00 2.15
1465 5520 7.388776 GTGTGCTGGTTGTGTATGATATGATAT 59.611 37.037 0.00 0.00 0.00 1.63
1466 5521 7.388500 TGTGCTGGTTGTGTATGATATGATATG 59.612 37.037 0.00 0.00 0.00 1.78
1467 5522 7.603784 GTGCTGGTTGTGTATGATATGATATGA 59.396 37.037 0.00 0.00 0.00 2.15
1468 5523 8.323567 TGCTGGTTGTGTATGATATGATATGAT 58.676 33.333 0.00 0.00 0.00 2.45
1505 5560 4.152402 ACTTGTTTCTCCAAATCGTCATCG 59.848 41.667 0.00 0.00 38.55 3.84
1508 5563 2.188837 TCTCCAAATCGTCATCGTCG 57.811 50.000 0.00 0.00 38.33 5.12
1509 5564 1.471287 TCTCCAAATCGTCATCGTCGT 59.529 47.619 0.00 0.00 38.33 4.34
1510 5565 2.679336 TCTCCAAATCGTCATCGTCGTA 59.321 45.455 0.00 0.00 38.33 3.43
1511 5566 3.036633 CTCCAAATCGTCATCGTCGTAG 58.963 50.000 0.00 0.00 38.33 3.51
1512 5567 2.421073 TCCAAATCGTCATCGTCGTAGT 59.579 45.455 0.00 0.00 38.33 2.73
1513 5568 3.622612 TCCAAATCGTCATCGTCGTAGTA 59.377 43.478 0.00 0.00 38.33 1.82
1514 5569 3.722780 CCAAATCGTCATCGTCGTAGTAC 59.277 47.826 0.00 0.00 38.33 2.73
1515 5570 2.918656 ATCGTCATCGTCGTAGTACG 57.081 50.000 16.65 16.65 44.19 3.67
1516 5571 1.629013 TCGTCATCGTCGTAGTACGT 58.371 50.000 21.38 0.00 43.31 3.57
1517 5572 1.992667 TCGTCATCGTCGTAGTACGTT 59.007 47.619 21.38 3.86 43.31 3.99
1518 5573 2.411748 TCGTCATCGTCGTAGTACGTTT 59.588 45.455 21.38 3.53 43.31 3.60
1519 5574 2.767678 CGTCATCGTCGTAGTACGTTTC 59.232 50.000 21.38 12.35 43.14 2.78
1539 5594 8.336498 CGTTTCTACGTTTCTATCATGTATGT 57.664 34.615 0.00 0.00 42.72 2.29
1540 5595 8.259872 CGTTTCTACGTTTCTATCATGTATGTG 58.740 37.037 0.00 0.00 42.72 3.21
1555 5610 4.968259 TGTATGTGCTCCTACTTGTTTGT 58.032 39.130 3.45 0.00 0.00 2.83
1557 5612 2.846193 TGTGCTCCTACTTGTTTGTCC 58.154 47.619 0.00 0.00 0.00 4.02
1564 5619 2.936498 CCTACTTGTTTGTCCGCTATGG 59.064 50.000 0.00 0.00 40.09 2.74
1565 5620 1.165270 ACTTGTTTGTCCGCTATGGC 58.835 50.000 0.00 0.00 37.80 4.40
1598 5653 3.567164 CCTATGCAATTCTTGGTGCTAGG 59.433 47.826 0.00 0.00 41.48 3.02
1599 5654 2.877097 TGCAATTCTTGGTGCTAGGA 57.123 45.000 0.00 0.00 41.48 2.94
1600 5655 2.436417 TGCAATTCTTGGTGCTAGGAC 58.564 47.619 5.70 5.70 41.48 3.85
1601 5656 2.040278 TGCAATTCTTGGTGCTAGGACT 59.960 45.455 14.52 0.00 41.48 3.85
1602 5657 2.421424 GCAATTCTTGGTGCTAGGACTG 59.579 50.000 14.52 3.90 37.78 3.51
1603 5658 2.409948 ATTCTTGGTGCTAGGACTGC 57.590 50.000 14.52 0.00 0.00 4.40
1604 5659 1.352083 TTCTTGGTGCTAGGACTGCT 58.648 50.000 14.52 0.00 0.00 4.24
1605 5660 2.231716 TCTTGGTGCTAGGACTGCTA 57.768 50.000 14.52 0.00 0.00 3.49
1606 5661 2.103373 TCTTGGTGCTAGGACTGCTAG 58.897 52.381 14.52 5.23 0.00 3.42
1625 5680 6.757026 GCTAGCTAGCTAATTGTAGTCAAC 57.243 41.667 33.71 3.53 45.62 3.18
1628 5683 7.254151 GCTAGCTAGCTAATTGTAGTCAACAAC 60.254 40.741 33.71 2.51 46.71 3.32
1658 5713 5.122519 TCACACAGCACTAAAATGAACTCA 58.877 37.500 0.00 0.00 0.00 3.41
1666 5721 8.024865 CAGCACTAAAATGAACTCATCAATGAA 58.975 33.333 0.00 0.00 42.54 2.57
1676 5731 7.218614 TGAACTCATCAATGAAAAATGCCTTT 58.781 30.769 0.00 0.00 36.18 3.11
1677 5732 7.171848 TGAACTCATCAATGAAAAATGCCTTTG 59.828 33.333 0.00 0.00 36.18 2.77
1680 5735 6.995364 TCATCAATGAAAAATGCCTTTGAGA 58.005 32.000 0.00 0.00 33.08 3.27
1696 5751 8.965819 TGCCTTTGAGAAAATTATGCATACTAA 58.034 29.630 5.74 0.00 0.00 2.24
1697 5752 9.801873 GCCTTTGAGAAAATTATGCATACTAAA 57.198 29.630 5.74 0.00 0.00 1.85
1711 5766 8.633075 ATGCATACTAAAAATGTACAATGTGC 57.367 30.769 0.00 0.00 0.00 4.57
1712 5767 7.597386 TGCATACTAAAAATGTACAATGTGCA 58.403 30.769 6.63 6.63 32.23 4.57
1713 5768 8.249638 TGCATACTAAAAATGTACAATGTGCAT 58.750 29.630 11.13 11.13 40.33 3.96
1714 5769 8.533965 GCATACTAAAAATGTACAATGTGCATG 58.466 33.333 17.19 7.35 37.86 4.06
1715 5770 9.571810 CATACTAAAAATGTACAATGTGCATGT 57.428 29.630 17.19 9.50 37.86 3.21
1718 5773 9.973450 ACTAAAAATGTACAATGTGCATGTTAA 57.027 25.926 17.91 5.33 35.59 2.01
1720 5775 8.885494 AAAAATGTACAATGTGCATGTTAACT 57.115 26.923 17.91 2.90 35.59 2.24
1721 5776 7.872163 AAATGTACAATGTGCATGTTAACTG 57.128 32.000 17.19 4.14 37.86 3.16
1722 5777 6.573664 ATGTACAATGTGCATGTTAACTGT 57.426 33.333 15.87 2.86 37.47 3.55
1723 5778 5.756849 TGTACAATGTGCATGTTAACTGTG 58.243 37.500 7.22 7.13 32.27 3.66
1724 5779 4.916983 ACAATGTGCATGTTAACTGTGT 57.083 36.364 7.22 0.99 0.00 3.72
1725 5780 6.483640 TGTACAATGTGCATGTTAACTGTGTA 59.516 34.615 7.22 2.98 32.27 2.90
1726 5781 6.573664 ACAATGTGCATGTTAACTGTGTAT 57.426 33.333 7.22 1.21 0.00 2.29
1727 5782 7.680442 ACAATGTGCATGTTAACTGTGTATA 57.320 32.000 7.22 4.66 0.00 1.47
1728 5783 8.105097 ACAATGTGCATGTTAACTGTGTATAA 57.895 30.769 7.22 0.23 0.00 0.98
1729 5784 8.572185 ACAATGTGCATGTTAACTGTGTATAAA 58.428 29.630 7.22 0.00 0.00 1.40
1730 5785 9.571810 CAATGTGCATGTTAACTGTGTATAAAT 57.428 29.630 7.22 0.24 0.00 1.40
1772 5827 8.992073 ACGAGAAATGTTAAACCTATTTTACGT 58.008 29.630 0.00 0.00 34.54 3.57
1773 5828 9.815936 CGAGAAATGTTAAACCTATTTTACGTT 57.184 29.630 0.00 0.00 37.88 3.99
1780 5835 9.539825 TGTTAAACCTATTTTACGTTGAGTACA 57.460 29.630 0.00 0.00 34.56 2.90
1784 5839 9.933723 AAACCTATTTTACGTTGAGTACATACT 57.066 29.630 0.00 0.00 39.71 2.12
1794 5849 3.211718 GAGTACATACTCCCTCCGTCT 57.788 52.381 7.70 0.00 45.33 4.18
1795 5850 3.140623 GAGTACATACTCCCTCCGTCTC 58.859 54.545 7.70 0.00 45.33 3.36
1796 5851 2.508716 AGTACATACTCCCTCCGTCTCA 59.491 50.000 0.00 0.00 0.00 3.27
1797 5852 2.526888 ACATACTCCCTCCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
1798 5853 2.816411 ACATACTCCCTCCGTCTCAAA 58.184 47.619 0.00 0.00 0.00 2.69
1799 5854 3.170717 ACATACTCCCTCCGTCTCAAAA 58.829 45.455 0.00 0.00 0.00 2.44
1800 5855 3.775316 ACATACTCCCTCCGTCTCAAAAT 59.225 43.478 0.00 0.00 0.00 1.82
1801 5856 4.960469 ACATACTCCCTCCGTCTCAAAATA 59.040 41.667 0.00 0.00 0.00 1.40
1802 5857 5.424252 ACATACTCCCTCCGTCTCAAAATAA 59.576 40.000 0.00 0.00 0.00 1.40
1803 5858 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
1804 5859 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
1805 5860 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
1806 5861 5.174037 TCCCTCCGTCTCAAAATAAATGT 57.826 39.130 0.00 0.00 0.00 2.71
1807 5862 5.183228 TCCCTCCGTCTCAAAATAAATGTC 58.817 41.667 0.00 0.00 0.00 3.06
1808 5863 5.045869 TCCCTCCGTCTCAAAATAAATGTCT 60.046 40.000 0.00 0.00 0.00 3.41
1809 5864 5.648092 CCCTCCGTCTCAAAATAAATGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
1810 5865 6.821665 CCCTCCGTCTCAAAATAAATGTCTTA 59.178 38.462 0.00 0.00 0.00 2.10
1811 5866 7.335924 CCCTCCGTCTCAAAATAAATGTCTTAA 59.664 37.037 0.00 0.00 0.00 1.85
1812 5867 8.175716 CCTCCGTCTCAAAATAAATGTCTTAAC 58.824 37.037 0.00 0.00 0.00 2.01
1813 5868 8.842358 TCCGTCTCAAAATAAATGTCTTAACT 57.158 30.769 0.00 0.00 0.00 2.24
1814 5869 9.280174 TCCGTCTCAAAATAAATGTCTTAACTT 57.720 29.630 0.00 0.00 0.00 2.66
1815 5870 9.893305 CCGTCTCAAAATAAATGTCTTAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
1883 5938 5.876612 TTTTGAGACGGAGAGAGTAGTAC 57.123 43.478 0.00 0.00 0.00 2.73
1884 5939 4.548451 TTGAGACGGAGAGAGTAGTACA 57.452 45.455 2.52 0.00 0.00 2.90
1885 5940 4.757019 TGAGACGGAGAGAGTAGTACAT 57.243 45.455 2.52 0.00 0.00 2.29
1886 5941 5.866159 TGAGACGGAGAGAGTAGTACATA 57.134 43.478 2.52 0.00 0.00 2.29
1887 5942 5.599732 TGAGACGGAGAGAGTAGTACATAC 58.400 45.833 2.52 0.00 34.30 2.39
1897 5952 4.516652 AGTAGTACATACTCCCTCCGTT 57.483 45.455 2.52 0.00 40.99 4.44
1898 5953 4.459330 AGTAGTACATACTCCCTCCGTTC 58.541 47.826 2.52 0.00 40.99 3.95
1899 5954 2.295885 AGTACATACTCCCTCCGTTCG 58.704 52.381 0.00 0.00 0.00 3.95
1900 5955 1.336125 GTACATACTCCCTCCGTTCGG 59.664 57.143 4.74 4.74 0.00 4.30
1901 5956 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1902 5957 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
1903 5958 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
1904 5959 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
1905 5960 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1906 5961 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1907 5962 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1908 5963 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1909 5964 3.364549 TCCCTCCGTTCGGAATTACTTA 58.635 45.455 14.79 0.00 33.41 2.24
1910 5965 3.962718 TCCCTCCGTTCGGAATTACTTAT 59.037 43.478 14.79 0.00 33.41 1.73
1911 5966 4.038402 TCCCTCCGTTCGGAATTACTTATC 59.962 45.833 14.79 0.00 33.41 1.75
1912 5967 4.038883 CCCTCCGTTCGGAATTACTTATCT 59.961 45.833 14.79 0.00 33.41 1.98
1913 5968 5.221130 CCTCCGTTCGGAATTACTTATCTC 58.779 45.833 14.79 0.00 33.41 2.75
1914 5969 4.852138 TCCGTTCGGAATTACTTATCTCG 58.148 43.478 11.66 0.00 0.00 4.04
1915 5970 3.979495 CCGTTCGGAATTACTTATCTCGG 59.021 47.826 5.19 0.00 0.00 4.63
1916 5971 4.261322 CCGTTCGGAATTACTTATCTCGGA 60.261 45.833 5.19 0.00 35.94 4.55
1917 5972 5.276270 CGTTCGGAATTACTTATCTCGGAA 58.724 41.667 0.00 0.00 0.00 4.30
1918 5973 5.745294 CGTTCGGAATTACTTATCTCGGAAA 59.255 40.000 0.00 0.00 31.52 3.13
1919 5974 6.420008 CGTTCGGAATTACTTATCTCGGAAAT 59.580 38.462 0.00 0.00 31.52 2.17
1920 5975 7.592533 CGTTCGGAATTACTTATCTCGGAAATA 59.407 37.037 0.00 0.00 31.52 1.40
1921 5976 8.913656 GTTCGGAATTACTTATCTCGGAAATAG 58.086 37.037 0.00 0.00 31.52 1.73
1922 5977 8.400184 TCGGAATTACTTATCTCGGAAATAGA 57.600 34.615 0.00 0.00 0.00 1.98
1923 5978 9.021807 TCGGAATTACTTATCTCGGAAATAGAT 57.978 33.333 0.00 0.00 37.46 1.98
1924 5979 9.077674 CGGAATTACTTATCTCGGAAATAGATG 57.922 37.037 0.00 0.00 35.36 2.90
1925 5980 9.930693 GGAATTACTTATCTCGGAAATAGATGT 57.069 33.333 0.00 0.00 35.36 3.06
1977 6032 9.099454 ACATCTATTTCTTCGACAAGTAATTCC 57.901 33.333 0.00 0.00 33.16 3.01
1978 6033 7.751047 TCTATTTCTTCGACAAGTAATTCCG 57.249 36.000 0.00 0.00 33.16 4.30
1979 6034 7.541162 TCTATTTCTTCGACAAGTAATTCCGA 58.459 34.615 0.00 0.00 33.16 4.55
1980 6035 8.030692 TCTATTTCTTCGACAAGTAATTCCGAA 58.969 33.333 8.65 8.65 33.16 4.30
1981 6036 5.834239 TTCTTCGACAAGTAATTCCGAAC 57.166 39.130 5.81 0.00 35.71 3.95
1982 6037 3.916172 TCTTCGACAAGTAATTCCGAACG 59.084 43.478 5.81 0.00 35.71 3.95
1983 6038 2.598589 TCGACAAGTAATTCCGAACGG 58.401 47.619 6.94 6.94 0.00 4.44
1984 6039 2.228582 TCGACAAGTAATTCCGAACGGA 59.771 45.455 12.04 12.04 43.52 4.69
1985 6040 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1986 6041 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1987 6042 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1988 6043 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1989 6044 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1990 6045 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1991 6046 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1992 6047 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
1993 6048 0.682209 TTCCGAACGGAGGGAGTAGG 60.682 60.000 15.34 0.00 46.06 3.18
1994 6049 1.379576 CCGAACGGAGGGAGTAGGT 60.380 63.158 7.53 0.00 37.50 3.08
1995 6050 0.969409 CCGAACGGAGGGAGTAGGTT 60.969 60.000 7.53 0.00 37.50 3.50
1996 6051 0.172803 CGAACGGAGGGAGTAGGTTG 59.827 60.000 0.00 0.00 0.00 3.77
1997 6052 0.535797 GAACGGAGGGAGTAGGTTGG 59.464 60.000 0.00 0.00 0.00 3.77
1998 6053 0.115745 AACGGAGGGAGTAGGTTGGA 59.884 55.000 0.00 0.00 0.00 3.53
1999 6054 0.324460 ACGGAGGGAGTAGGTTGGAG 60.324 60.000 0.00 0.00 0.00 3.86
2000 6055 1.677637 CGGAGGGAGTAGGTTGGAGC 61.678 65.000 0.00 0.00 0.00 4.70
2001 6056 0.617820 GGAGGGAGTAGGTTGGAGCA 60.618 60.000 0.00 0.00 0.00 4.26
2002 6057 1.501582 GAGGGAGTAGGTTGGAGCAT 58.498 55.000 0.00 0.00 0.00 3.79
2003 6058 1.840635 GAGGGAGTAGGTTGGAGCATT 59.159 52.381 0.00 0.00 0.00 3.56
2004 6059 2.239907 GAGGGAGTAGGTTGGAGCATTT 59.760 50.000 0.00 0.00 0.00 2.32
2005 6060 2.649816 AGGGAGTAGGTTGGAGCATTTT 59.350 45.455 0.00 0.00 0.00 1.82
2006 6061 3.017442 GGGAGTAGGTTGGAGCATTTTC 58.983 50.000 0.00 0.00 0.00 2.29
2007 6062 3.561313 GGGAGTAGGTTGGAGCATTTTCA 60.561 47.826 0.00 0.00 0.00 2.69
2008 6063 4.273318 GGAGTAGGTTGGAGCATTTTCAT 58.727 43.478 0.00 0.00 0.00 2.57
2009 6064 5.437060 GGAGTAGGTTGGAGCATTTTCATA 58.563 41.667 0.00 0.00 0.00 2.15
2010 6065 5.885912 GGAGTAGGTTGGAGCATTTTCATAA 59.114 40.000 0.00 0.00 0.00 1.90
2011 6066 6.377146 GGAGTAGGTTGGAGCATTTTCATAAA 59.623 38.462 0.00 0.00 0.00 1.40
2012 6067 7.093945 GGAGTAGGTTGGAGCATTTTCATAAAA 60.094 37.037 0.00 0.00 34.41 1.52
2013 6068 8.189119 AGTAGGTTGGAGCATTTTCATAAAAA 57.811 30.769 0.00 0.00 38.66 1.94
2038 6093 9.911788 AAAAAGTATCTCCATCTGATGTATGTT 57.088 29.630 15.95 4.40 0.00 2.71
2039 6094 8.899427 AAAGTATCTCCATCTGATGTATGTTG 57.101 34.615 15.95 0.50 0.00 3.33
2040 6095 7.846101 AGTATCTCCATCTGATGTATGTTGA 57.154 36.000 15.95 4.70 0.00 3.18
2041 6096 8.433249 AGTATCTCCATCTGATGTATGTTGAT 57.567 34.615 15.95 11.24 0.00 2.57
2042 6097 8.878211 AGTATCTCCATCTGATGTATGTTGATT 58.122 33.333 15.95 0.40 0.00 2.57
2045 6100 9.722184 ATCTCCATCTGATGTATGTTGATTAAG 57.278 33.333 15.95 0.00 0.00 1.85
2046 6101 7.658982 TCTCCATCTGATGTATGTTGATTAAGC 59.341 37.037 15.95 0.00 0.00 3.09
2047 6102 7.512130 TCCATCTGATGTATGTTGATTAAGCT 58.488 34.615 15.95 0.00 0.00 3.74
2048 6103 8.650490 TCCATCTGATGTATGTTGATTAAGCTA 58.350 33.333 15.95 0.00 0.00 3.32
2049 6104 9.276590 CCATCTGATGTATGTTGATTAAGCTAA 57.723 33.333 15.95 0.00 0.00 3.09
2057 6112 9.066892 TGTATGTTGATTAAGCTAATTGATCCC 57.933 33.333 0.00 0.00 33.91 3.85
2058 6113 6.959639 TGTTGATTAAGCTAATTGATCCCC 57.040 37.500 0.00 0.00 33.91 4.81
2059 6114 5.530915 TGTTGATTAAGCTAATTGATCCCCG 59.469 40.000 0.00 0.00 33.91 5.73
2060 6115 4.072131 TGATTAAGCTAATTGATCCCCGC 58.928 43.478 0.00 0.00 33.91 6.13
2061 6116 3.857157 TTAAGCTAATTGATCCCCGCT 57.143 42.857 0.00 0.00 0.00 5.52
2062 6117 2.262423 AAGCTAATTGATCCCCGCTC 57.738 50.000 0.00 0.00 0.00 5.03
2063 6118 1.428869 AGCTAATTGATCCCCGCTCT 58.571 50.000 0.00 0.00 0.00 4.09
2064 6119 1.071385 AGCTAATTGATCCCCGCTCTG 59.929 52.381 0.00 0.00 0.00 3.35
2065 6120 1.202698 GCTAATTGATCCCCGCTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
2066 6121 2.746472 GCTAATTGATCCCCGCTCTGTT 60.746 50.000 0.00 0.00 0.00 3.16
2067 6122 3.494398 GCTAATTGATCCCCGCTCTGTTA 60.494 47.826 0.00 0.00 0.00 2.41
2068 6123 3.864789 AATTGATCCCCGCTCTGTTAT 57.135 42.857 0.00 0.00 0.00 1.89
2069 6124 2.620251 TTGATCCCCGCTCTGTTATG 57.380 50.000 0.00 0.00 0.00 1.90
2070 6125 0.106708 TGATCCCCGCTCTGTTATGC 59.893 55.000 0.00 0.00 0.00 3.14
2071 6126 0.394565 GATCCCCGCTCTGTTATGCT 59.605 55.000 0.00 0.00 0.00 3.79
2072 6127 0.107456 ATCCCCGCTCTGTTATGCTG 59.893 55.000 0.00 0.00 0.00 4.41
2073 6128 2.182842 CCCCGCTCTGTTATGCTGC 61.183 63.158 0.00 0.00 0.00 5.25
2074 6129 1.153289 CCCGCTCTGTTATGCTGCT 60.153 57.895 0.00 0.00 0.00 4.24
2075 6130 1.434622 CCCGCTCTGTTATGCTGCTG 61.435 60.000 0.00 0.00 0.00 4.41
2076 6131 1.351012 CGCTCTGTTATGCTGCTGC 59.649 57.895 8.89 8.89 40.20 5.25
2077 6132 1.726265 GCTCTGTTATGCTGCTGCC 59.274 57.895 13.47 0.00 38.71 4.85
2078 6133 0.747283 GCTCTGTTATGCTGCTGCCT 60.747 55.000 13.47 5.83 38.71 4.75
2079 6134 1.747709 CTCTGTTATGCTGCTGCCTT 58.252 50.000 13.47 3.33 38.71 4.35
2080 6135 2.089980 CTCTGTTATGCTGCTGCCTTT 58.910 47.619 13.47 0.78 38.71 3.11
2081 6136 1.814394 TCTGTTATGCTGCTGCCTTTG 59.186 47.619 13.47 0.00 38.71 2.77
2082 6137 0.244450 TGTTATGCTGCTGCCTTTGC 59.756 50.000 13.47 0.00 38.71 3.68
2091 6146 3.131155 TGCCTTTGCAGCCTTGTG 58.869 55.556 0.00 0.00 44.23 3.33
2092 6147 1.455402 TGCCTTTGCAGCCTTGTGA 60.455 52.632 0.00 0.00 44.23 3.58
2093 6148 1.288127 GCCTTTGCAGCCTTGTGAG 59.712 57.895 0.00 0.00 37.47 3.51
2094 6149 1.962144 CCTTTGCAGCCTTGTGAGG 59.038 57.895 0.00 0.00 46.50 3.86
2095 6150 0.538057 CCTTTGCAGCCTTGTGAGGA 60.538 55.000 0.00 0.00 46.74 3.71
2096 6151 1.321474 CTTTGCAGCCTTGTGAGGAA 58.679 50.000 0.00 0.00 46.74 3.36
2097 6152 1.000938 CTTTGCAGCCTTGTGAGGAAC 60.001 52.381 0.00 0.00 46.74 3.62
2098 6153 0.183492 TTGCAGCCTTGTGAGGAACT 59.817 50.000 0.00 0.00 46.74 3.01
2099 6154 0.183492 TGCAGCCTTGTGAGGAACTT 59.817 50.000 0.00 0.00 46.74 2.66
2100 6155 0.877743 GCAGCCTTGTGAGGAACTTC 59.122 55.000 0.00 0.00 46.74 3.01
2101 6156 1.815408 GCAGCCTTGTGAGGAACTTCA 60.815 52.381 0.00 0.00 46.74 3.02
2102 6157 2.787994 CAGCCTTGTGAGGAACTTCAT 58.212 47.619 0.00 0.00 46.74 2.57
2103 6158 2.486982 CAGCCTTGTGAGGAACTTCATG 59.513 50.000 0.00 0.00 46.74 3.07
2104 6159 2.107204 AGCCTTGTGAGGAACTTCATGT 59.893 45.455 0.00 0.00 46.74 3.21
2105 6160 2.485814 GCCTTGTGAGGAACTTCATGTC 59.514 50.000 0.00 0.00 46.74 3.06
2106 6161 3.808618 GCCTTGTGAGGAACTTCATGTCT 60.809 47.826 0.00 0.00 46.74 3.41
2107 6162 4.563580 GCCTTGTGAGGAACTTCATGTCTA 60.564 45.833 0.00 0.00 46.74 2.59
2108 6163 4.932200 CCTTGTGAGGAACTTCATGTCTAC 59.068 45.833 0.00 0.00 46.74 2.59
2109 6164 4.537135 TGTGAGGAACTTCATGTCTACC 57.463 45.455 0.00 0.00 41.55 3.18
2110 6165 4.160329 TGTGAGGAACTTCATGTCTACCT 58.840 43.478 0.00 0.00 41.55 3.08
2111 6166 4.021104 TGTGAGGAACTTCATGTCTACCTG 60.021 45.833 0.00 0.00 41.55 4.00
2112 6167 4.021016 GTGAGGAACTTCATGTCTACCTGT 60.021 45.833 0.00 0.00 41.55 4.00
2113 6168 4.593206 TGAGGAACTTCATGTCTACCTGTT 59.407 41.667 0.00 0.00 41.55 3.16
2114 6169 5.778241 TGAGGAACTTCATGTCTACCTGTTA 59.222 40.000 0.00 0.00 41.55 2.41
2115 6170 6.038997 AGGAACTTCATGTCTACCTGTTAC 57.961 41.667 0.00 0.00 27.25 2.50
2116 6171 5.780793 AGGAACTTCATGTCTACCTGTTACT 59.219 40.000 0.00 0.00 27.25 2.24
2117 6172 6.270231 AGGAACTTCATGTCTACCTGTTACTT 59.730 38.462 0.00 0.00 27.25 2.24
2118 6173 6.590677 GGAACTTCATGTCTACCTGTTACTTC 59.409 42.308 0.00 0.00 0.00 3.01
2119 6174 6.038997 ACTTCATGTCTACCTGTTACTTCC 57.961 41.667 0.00 0.00 0.00 3.46
2120 6175 5.780793 ACTTCATGTCTACCTGTTACTTCCT 59.219 40.000 0.00 0.00 0.00 3.36
2121 6176 5.916661 TCATGTCTACCTGTTACTTCCTC 57.083 43.478 0.00 0.00 0.00 3.71
2122 6177 5.580998 TCATGTCTACCTGTTACTTCCTCT 58.419 41.667 0.00 0.00 0.00 3.69
2123 6178 6.017192 TCATGTCTACCTGTTACTTCCTCTT 58.983 40.000 0.00 0.00 0.00 2.85
2124 6179 6.497259 TCATGTCTACCTGTTACTTCCTCTTT 59.503 38.462 0.00 0.00 0.00 2.52
2125 6180 6.097915 TGTCTACCTGTTACTTCCTCTTTG 57.902 41.667 0.00 0.00 0.00 2.77
2126 6181 4.930405 GTCTACCTGTTACTTCCTCTTTGC 59.070 45.833 0.00 0.00 0.00 3.68
2127 6182 3.141767 ACCTGTTACTTCCTCTTTGCC 57.858 47.619 0.00 0.00 0.00 4.52
2128 6183 2.711547 ACCTGTTACTTCCTCTTTGCCT 59.288 45.455 0.00 0.00 0.00 4.75
2129 6184 3.138468 ACCTGTTACTTCCTCTTTGCCTT 59.862 43.478 0.00 0.00 0.00 4.35
2130 6185 3.753797 CCTGTTACTTCCTCTTTGCCTTC 59.246 47.826 0.00 0.00 0.00 3.46
2131 6186 3.751518 TGTTACTTCCTCTTTGCCTTCC 58.248 45.455 0.00 0.00 0.00 3.46
2132 6187 3.394606 TGTTACTTCCTCTTTGCCTTCCT 59.605 43.478 0.00 0.00 0.00 3.36
2133 6188 2.575805 ACTTCCTCTTTGCCTTCCTG 57.424 50.000 0.00 0.00 0.00 3.86
2134 6189 1.777272 ACTTCCTCTTTGCCTTCCTGT 59.223 47.619 0.00 0.00 0.00 4.00
2135 6190 2.979678 ACTTCCTCTTTGCCTTCCTGTA 59.020 45.455 0.00 0.00 0.00 2.74
2136 6191 3.008485 ACTTCCTCTTTGCCTTCCTGTAG 59.992 47.826 0.00 0.00 0.00 2.74
2137 6192 2.621070 TCCTCTTTGCCTTCCTGTAGT 58.379 47.619 0.00 0.00 0.00 2.73
2138 6193 3.786553 TCCTCTTTGCCTTCCTGTAGTA 58.213 45.455 0.00 0.00 0.00 1.82
2139 6194 3.769844 TCCTCTTTGCCTTCCTGTAGTAG 59.230 47.826 0.00 0.00 0.00 2.57
2140 6195 3.515901 CCTCTTTGCCTTCCTGTAGTAGT 59.484 47.826 0.00 0.00 0.00 2.73
2141 6196 4.710375 CCTCTTTGCCTTCCTGTAGTAGTA 59.290 45.833 0.00 0.00 0.00 1.82
2142 6197 5.394333 CCTCTTTGCCTTCCTGTAGTAGTAC 60.394 48.000 0.37 0.37 0.00 2.73
2143 6198 4.465305 TCTTTGCCTTCCTGTAGTAGTACC 59.535 45.833 5.26 0.00 0.00 3.34
2144 6199 3.752359 TGCCTTCCTGTAGTAGTACCT 57.248 47.619 5.26 0.00 0.00 3.08
2145 6200 3.629087 TGCCTTCCTGTAGTAGTACCTC 58.371 50.000 5.26 0.00 0.00 3.85
2146 6201 2.957680 GCCTTCCTGTAGTAGTACCTCC 59.042 54.545 5.26 0.00 0.00 4.30
2147 6202 3.212685 CCTTCCTGTAGTAGTACCTCCG 58.787 54.545 5.26 0.00 0.00 4.63
2148 6203 3.371380 CCTTCCTGTAGTAGTACCTCCGT 60.371 52.174 5.26 0.00 0.00 4.69
2149 6204 3.550437 TCCTGTAGTAGTACCTCCGTC 57.450 52.381 5.26 0.00 0.00 4.79
2150 6205 2.171448 TCCTGTAGTAGTACCTCCGTCC 59.829 54.545 5.26 0.00 0.00 4.79
2151 6206 2.172293 CCTGTAGTAGTACCTCCGTCCT 59.828 54.545 5.26 0.00 0.00 3.85
2152 6207 3.204526 CTGTAGTAGTACCTCCGTCCTG 58.795 54.545 5.26 0.00 0.00 3.86
2153 6208 2.840038 TGTAGTAGTACCTCCGTCCTGA 59.160 50.000 5.26 0.00 0.00 3.86
2154 6209 3.457380 TGTAGTAGTACCTCCGTCCTGAT 59.543 47.826 5.26 0.00 0.00 2.90
2155 6210 3.666345 AGTAGTACCTCCGTCCTGATT 57.334 47.619 0.00 0.00 0.00 2.57
2156 6211 3.978610 AGTAGTACCTCCGTCCTGATTT 58.021 45.455 0.00 0.00 0.00 2.17
2157 6212 5.121380 AGTAGTACCTCCGTCCTGATTTA 57.879 43.478 0.00 0.00 0.00 1.40
2158 6213 5.703310 AGTAGTACCTCCGTCCTGATTTAT 58.297 41.667 0.00 0.00 0.00 1.40
2159 6214 6.134754 AGTAGTACCTCCGTCCTGATTTATT 58.865 40.000 0.00 0.00 0.00 1.40
2160 6215 5.277857 AGTACCTCCGTCCTGATTTATTG 57.722 43.478 0.00 0.00 0.00 1.90
2161 6216 3.560636 ACCTCCGTCCTGATTTATTGG 57.439 47.619 0.00 0.00 0.00 3.16
2162 6217 2.844348 ACCTCCGTCCTGATTTATTGGT 59.156 45.455 0.00 0.00 0.00 3.67
2163 6218 3.118371 ACCTCCGTCCTGATTTATTGGTC 60.118 47.826 0.00 0.00 0.00 4.02
2164 6219 3.467803 CTCCGTCCTGATTTATTGGTCC 58.532 50.000 0.00 0.00 0.00 4.46
2165 6220 2.171870 TCCGTCCTGATTTATTGGTCCC 59.828 50.000 0.00 0.00 0.00 4.46
2166 6221 2.572290 CGTCCTGATTTATTGGTCCCC 58.428 52.381 0.00 0.00 0.00 4.81
2167 6222 2.172717 CGTCCTGATTTATTGGTCCCCT 59.827 50.000 0.00 0.00 0.00 4.79
2168 6223 3.371595 CGTCCTGATTTATTGGTCCCCTT 60.372 47.826 0.00 0.00 0.00 3.95
2169 6224 4.207955 GTCCTGATTTATTGGTCCCCTTC 58.792 47.826 0.00 0.00 0.00 3.46
2170 6225 3.855599 TCCTGATTTATTGGTCCCCTTCA 59.144 43.478 0.00 0.00 0.00 3.02
2171 6226 4.482025 TCCTGATTTATTGGTCCCCTTCAT 59.518 41.667 0.00 0.00 0.00 2.57
2172 6227 5.674496 TCCTGATTTATTGGTCCCCTTCATA 59.326 40.000 0.00 0.00 0.00 2.15
2173 6228 6.335311 TCCTGATTTATTGGTCCCCTTCATAT 59.665 38.462 0.00 0.00 0.00 1.78
2174 6229 7.012607 CCTGATTTATTGGTCCCCTTCATATT 58.987 38.462 0.00 0.00 0.00 1.28
2175 6230 7.510343 CCTGATTTATTGGTCCCCTTCATATTT 59.490 37.037 0.00 0.00 0.00 1.40
2176 6231 8.852671 TGATTTATTGGTCCCCTTCATATTTT 57.147 30.769 0.00 0.00 0.00 1.82
2177 6232 9.944079 TGATTTATTGGTCCCCTTCATATTTTA 57.056 29.630 0.00 0.00 0.00 1.52
2180 6235 9.722317 TTTATTGGTCCCCTTCATATTTTATGT 57.278 29.630 0.00 0.00 0.00 2.29
2181 6236 7.839680 ATTGGTCCCCTTCATATTTTATGTC 57.160 36.000 0.00 0.00 0.00 3.06
2182 6237 6.334378 TGGTCCCCTTCATATTTTATGTCA 57.666 37.500 0.00 0.00 0.00 3.58
2183 6238 6.736581 TGGTCCCCTTCATATTTTATGTCAA 58.263 36.000 0.00 0.00 0.00 3.18
2184 6239 7.185565 TGGTCCCCTTCATATTTTATGTCAAA 58.814 34.615 0.00 0.00 0.00 2.69
2185 6240 7.123547 TGGTCCCCTTCATATTTTATGTCAAAC 59.876 37.037 0.00 0.00 0.00 2.93
2186 6241 7.342026 GGTCCCCTTCATATTTTATGTCAAACT 59.658 37.037 0.00 0.00 0.00 2.66
2187 6242 9.403583 GTCCCCTTCATATTTTATGTCAAACTA 57.596 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 7.355101 ACTATCTACCACCAATACTCTCTTCA 58.645 38.462 0.00 0.00 0.00 3.02
116 117 9.889128 CTATTAGGAGTACTACTATCTACCACC 57.111 40.741 15.77 0.00 0.00 4.61
150 151 6.575244 ATCATAGGTTGGTTCACCTCAATA 57.425 37.500 0.00 0.00 44.63 1.90
158 159 6.575244 ACCATCTAATCATAGGTTGGTTCA 57.425 37.500 0.00 0.00 40.31 3.18
188 2724 3.243771 GGTGGACCGAAGATACTACCATG 60.244 52.174 0.00 0.00 34.75 3.66
191 2727 2.361438 CAGGTGGACCGAAGATACTACC 59.639 54.545 0.00 0.00 42.08 3.18
194 2730 2.291670 ACTCAGGTGGACCGAAGATACT 60.292 50.000 7.30 0.00 42.08 2.12
201 2737 0.679505 CTTGAACTCAGGTGGACCGA 59.320 55.000 0.00 0.00 42.08 4.69
263 2800 3.007506 ACACACATCACCGATAAACCTGA 59.992 43.478 0.00 0.00 0.00 3.86
269 2806 4.265904 ACTGAACACACATCACCGATAA 57.734 40.909 0.00 0.00 0.00 1.75
271 2808 2.839486 ACTGAACACACATCACCGAT 57.161 45.000 0.00 0.00 0.00 4.18
283 2820 6.611613 ATGAATGTCTTCTCCTACTGAACA 57.388 37.500 0.00 0.00 32.29 3.18
291 2828 8.183104 TGTAATCGATATGAATGTCTTCTCCT 57.817 34.615 0.00 0.00 32.29 3.69
301 2838 7.921214 ACAGACGTCTTTGTAATCGATATGAAT 59.079 33.333 17.26 0.00 0.00 2.57
307 2844 5.035443 GCTACAGACGTCTTTGTAATCGAT 58.965 41.667 17.26 0.00 30.06 3.59
316 2853 3.050619 CGAAGTTGCTACAGACGTCTTT 58.949 45.455 17.26 13.05 0.00 2.52
339 2876 6.829811 TGAGCCATCACATCATTTTGAGATTA 59.170 34.615 0.00 0.00 0.00 1.75
358 2895 1.964223 ACTCTTCGAGAAACTGAGCCA 59.036 47.619 0.00 0.00 33.32 4.75
359 2896 2.734276 ACTCTTCGAGAAACTGAGCC 57.266 50.000 0.00 0.00 33.32 4.70
377 2914 6.345565 GCACATATACGTTCGTTCCTATGAAC 60.346 42.308 18.99 1.10 46.05 3.18
386 2965 4.353737 ACATACGCACATATACGTTCGTT 58.646 39.130 1.47 0.00 43.35 3.85
388 2967 5.791480 TCATACATACGCACATATACGTTCG 59.209 40.000 0.00 0.00 43.35 3.95
395 2974 6.084326 TGACACTCATACATACGCACATAT 57.916 37.500 0.00 0.00 0.00 1.78
399 2978 2.535984 GCTGACACTCATACATACGCAC 59.464 50.000 0.00 0.00 0.00 5.34
403 2982 5.163550 TGGTACAGCTGACACTCATACATAC 60.164 44.000 23.35 7.42 0.00 2.39
404 2983 4.953579 TGGTACAGCTGACACTCATACATA 59.046 41.667 23.35 1.03 0.00 2.29
405 2984 3.769300 TGGTACAGCTGACACTCATACAT 59.231 43.478 23.35 0.00 0.00 2.29
406 2985 3.161866 TGGTACAGCTGACACTCATACA 58.838 45.455 23.35 7.71 0.00 2.29
407 2986 3.868757 TGGTACAGCTGACACTCATAC 57.131 47.619 23.35 10.23 0.00 2.39
433 3012 1.607148 AGGCTCAACCGTGCTTTTTAC 59.393 47.619 0.00 0.00 46.52 2.01
640 3227 2.374170 TGCTGGTGATCATGCATATCCT 59.626 45.455 14.22 0.00 0.00 3.24
751 3338 1.412079 CTCTGTCCTCCTCTCCCATG 58.588 60.000 0.00 0.00 0.00 3.66
795 3382 0.854037 GATCGAGATACTAGCGCGCG 60.854 60.000 28.44 28.44 0.00 6.86
796 3383 0.854037 CGATCGAGATACTAGCGCGC 60.854 60.000 26.66 26.66 0.00 6.86
797 3384 0.854037 GCGATCGAGATACTAGCGCG 60.854 60.000 21.57 0.00 33.56 6.86
798 3385 0.854037 CGCGATCGAGATACTAGCGC 60.854 60.000 21.57 0.00 39.68 5.92
819 3407 2.264461 TGCAGCGGAAATGCGGAAA 61.264 52.632 0.00 0.00 46.87 3.13
827 3415 1.962306 GGGTAACGTGCAGCGGAAA 60.962 57.895 12.18 0.00 46.52 3.13
860 3448 1.373497 GGCGATCGATGGCACCTAG 60.373 63.158 29.72 0.00 32.78 3.02
861 3449 0.538746 TAGGCGATCGATGGCACCTA 60.539 55.000 29.72 20.39 32.78 3.08
862 3450 1.188219 ATAGGCGATCGATGGCACCT 61.188 55.000 29.72 21.30 32.78 4.00
957 3548 2.697751 CAGATGGAGCTTAGCTAGTGGT 59.302 50.000 6.75 0.00 39.88 4.16
987 3585 1.303074 CGCCATGGGAGGATGGATG 60.303 63.158 15.13 0.00 45.24 3.51
1156 3757 1.226686 AAGCAGCACTTCTCGCAGTG 61.227 55.000 0.00 5.20 46.15 3.66
1158 3759 3.963222 AAGCAGCACTTCTCGCAG 58.037 55.556 0.00 0.00 30.77 5.18
1174 3775 4.589675 GTTGGCCACCACCCCGAA 62.590 66.667 3.88 0.00 30.78 4.30
1225 3826 4.862092 AGGCGCGCACTCGATCAG 62.862 66.667 34.42 0.00 38.10 2.90
1242 3843 4.624364 CGACTGCAGTGGTGGCCA 62.624 66.667 27.27 0.00 0.00 5.36
1257 3858 3.909258 GACCTTCTTGTCGGCGCGA 62.909 63.158 12.10 0.00 0.00 5.87
1338 5357 3.786101 CGTGATGAAGAGGCCACG 58.214 61.111 5.01 0.00 44.66 4.94
1339 5358 1.450312 CCCGTGATGAAGAGGCCAC 60.450 63.158 5.01 0.00 0.00 5.01
1340 5359 1.612146 TCCCGTGATGAAGAGGCCA 60.612 57.895 5.01 0.00 0.00 5.36
1341 5360 1.153349 GTCCCGTGATGAAGAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
1343 5362 1.264749 TGGGTCCCGTGATGAAGAGG 61.265 60.000 2.65 0.00 0.00 3.69
1344 5363 0.108138 GTGGGTCCCGTGATGAAGAG 60.108 60.000 2.65 0.00 0.00 2.85
1345 5364 1.550130 GGTGGGTCCCGTGATGAAGA 61.550 60.000 2.65 0.00 0.00 2.87
1346 5365 1.078426 GGTGGGTCCCGTGATGAAG 60.078 63.158 2.65 0.00 0.00 3.02
1347 5366 1.131303 AAGGTGGGTCCCGTGATGAA 61.131 55.000 2.65 0.00 36.75 2.57
1348 5367 0.252330 TAAGGTGGGTCCCGTGATGA 60.252 55.000 2.65 0.00 36.75 2.92
1349 5368 0.837272 ATAAGGTGGGTCCCGTGATG 59.163 55.000 2.65 0.00 36.75 3.07
1350 5369 1.591768 AATAAGGTGGGTCCCGTGAT 58.408 50.000 2.65 0.00 36.75 3.06
1351 5370 2.112998 CTAATAAGGTGGGTCCCGTGA 58.887 52.381 2.65 0.00 36.75 4.35
1352 5371 1.474498 GCTAATAAGGTGGGTCCCGTG 60.474 57.143 2.65 0.00 36.75 4.94
1353 5372 0.835276 GCTAATAAGGTGGGTCCCGT 59.165 55.000 2.65 0.00 36.75 5.28
1354 5373 1.129058 AGCTAATAAGGTGGGTCCCG 58.871 55.000 2.65 0.00 36.75 5.14
1355 5374 2.640316 CAGCTAATAAGGTGGGTCCC 57.360 55.000 0.00 0.00 45.56 4.46
1388 5417 4.830826 ACACGAGATCGATATACTTGCA 57.169 40.909 9.58 0.00 43.02 4.08
1389 5418 4.976731 ACAACACGAGATCGATATACTTGC 59.023 41.667 9.58 0.00 43.02 4.01
1390 5419 5.971792 ACACAACACGAGATCGATATACTTG 59.028 40.000 9.58 0.00 43.02 3.16
1391 5420 5.971792 CACACAACACGAGATCGATATACTT 59.028 40.000 9.58 0.00 43.02 2.24
1392 5421 5.511571 CACACAACACGAGATCGATATACT 58.488 41.667 9.58 0.00 43.02 2.12
1395 5424 3.116300 GCACACAACACGAGATCGATAT 58.884 45.455 9.58 0.00 43.02 1.63
1406 5435 3.775661 AACTAAACAGGCACACAACAC 57.224 42.857 0.00 0.00 0.00 3.32
1408 5437 4.104696 ACAAACTAAACAGGCACACAAC 57.895 40.909 0.00 0.00 0.00 3.32
1410 5439 3.129638 GGAACAAACTAAACAGGCACACA 59.870 43.478 0.00 0.00 0.00 3.72
1415 5466 2.876550 AGTCGGAACAAACTAAACAGGC 59.123 45.455 0.00 0.00 0.00 4.85
1423 5474 0.461339 ACACGCAGTCGGAACAAACT 60.461 50.000 0.00 0.00 41.61 2.66
1438 5489 1.507562 TCATACACAACCAGCACACG 58.492 50.000 0.00 0.00 0.00 4.49
1464 5519 7.458409 AACAAGTAATCAGCAGAAACATCAT 57.542 32.000 0.00 0.00 0.00 2.45
1465 5520 6.882610 AACAAGTAATCAGCAGAAACATCA 57.117 33.333 0.00 0.00 0.00 3.07
1466 5521 7.588512 AGAAACAAGTAATCAGCAGAAACATC 58.411 34.615 0.00 0.00 0.00 3.06
1467 5522 7.308830 GGAGAAACAAGTAATCAGCAGAAACAT 60.309 37.037 0.00 0.00 0.00 2.71
1468 5523 6.017109 GGAGAAACAAGTAATCAGCAGAAACA 60.017 38.462 0.00 0.00 0.00 2.83
1476 5531 7.095229 TGACGATTTGGAGAAACAAGTAATCAG 60.095 37.037 0.00 0.00 0.00 2.90
1515 5570 8.056571 GCACATACATGATAGAAACGTAGAAAC 58.943 37.037 0.00 0.00 0.00 2.78
1516 5571 7.979537 AGCACATACATGATAGAAACGTAGAAA 59.020 33.333 0.00 0.00 0.00 2.52
1517 5572 7.489160 AGCACATACATGATAGAAACGTAGAA 58.511 34.615 0.00 0.00 0.00 2.10
1518 5573 7.039313 AGCACATACATGATAGAAACGTAGA 57.961 36.000 0.00 0.00 0.00 2.59
1519 5574 6.363626 GGAGCACATACATGATAGAAACGTAG 59.636 42.308 0.00 0.00 0.00 3.51
1534 5589 4.392138 GGACAAACAAGTAGGAGCACATAC 59.608 45.833 0.00 0.00 34.09 2.39
1537 5592 2.805295 CGGACAAACAAGTAGGAGCACA 60.805 50.000 0.00 0.00 0.00 4.57
1538 5593 1.798813 CGGACAAACAAGTAGGAGCAC 59.201 52.381 0.00 0.00 0.00 4.40
1539 5594 1.876416 GCGGACAAACAAGTAGGAGCA 60.876 52.381 0.00 0.00 0.00 4.26
1540 5595 0.796927 GCGGACAAACAAGTAGGAGC 59.203 55.000 0.00 0.00 0.00 4.70
1555 5610 3.202906 GAATTAGTGTTGCCATAGCGGA 58.797 45.455 0.00 0.00 44.31 5.54
1557 5612 3.206150 AGGAATTAGTGTTGCCATAGCG 58.794 45.455 0.00 0.00 44.31 4.26
1564 5619 6.799512 AGAATTGCATAGGAATTAGTGTTGC 58.200 36.000 0.00 0.00 0.00 4.17
1565 5620 8.624701 CAAGAATTGCATAGGAATTAGTGTTG 57.375 34.615 0.00 0.00 40.39 3.33
1599 5654 7.895617 GTTGACTACAATTAGCTAGCTAGCAGT 60.896 40.741 39.50 31.61 43.55 4.40
1600 5655 6.419413 GTTGACTACAATTAGCTAGCTAGCAG 59.581 42.308 39.50 29.11 43.55 4.24
1601 5656 6.127451 TGTTGACTACAATTAGCTAGCTAGCA 60.127 38.462 39.50 25.08 43.55 3.49
1602 5657 6.273825 TGTTGACTACAATTAGCTAGCTAGC 58.726 40.000 33.96 33.96 42.53 3.42
1625 5680 1.723542 GTGCTGTGTGATCTCGAGTTG 59.276 52.381 13.13 0.00 0.00 3.16
1628 5683 3.494045 TTAGTGCTGTGTGATCTCGAG 57.506 47.619 5.93 5.93 0.00 4.04
1631 5686 6.148480 AGTTCATTTTAGTGCTGTGTGATCTC 59.852 38.462 0.00 0.00 0.00 2.75
1658 5713 8.680039 TTTTCTCAAAGGCATTTTTCATTGAT 57.320 26.923 0.00 0.00 0.00 2.57
1666 5721 7.982761 TGCATAATTTTCTCAAAGGCATTTT 57.017 28.000 0.00 0.00 0.00 1.82
1688 5743 8.533965 CATGCACATTGTACATTTTTAGTATGC 58.466 33.333 0.00 0.00 0.00 3.14
1696 5751 7.925483 ACAGTTAACATGCACATTGTACATTTT 59.075 29.630 8.61 3.62 0.00 1.82
1697 5752 7.381948 CACAGTTAACATGCACATTGTACATTT 59.618 33.333 8.61 2.44 0.00 2.32
1698 5753 6.862608 CACAGTTAACATGCACATTGTACATT 59.137 34.615 8.61 0.00 0.00 2.71
1699 5754 6.016360 ACACAGTTAACATGCACATTGTACAT 60.016 34.615 8.61 0.00 0.00 2.29
1700 5755 5.298026 ACACAGTTAACATGCACATTGTACA 59.702 36.000 8.61 0.00 0.00 2.90
1701 5756 5.757886 ACACAGTTAACATGCACATTGTAC 58.242 37.500 8.61 0.00 0.00 2.90
1702 5757 7.680442 ATACACAGTTAACATGCACATTGTA 57.320 32.000 8.61 7.77 0.00 2.41
1703 5758 4.916983 ACACAGTTAACATGCACATTGT 57.083 36.364 8.61 0.00 0.00 2.71
1704 5759 8.962857 TTTATACACAGTTAACATGCACATTG 57.037 30.769 8.61 0.00 0.00 2.82
1746 5801 8.992073 ACGTAAAATAGGTTTAACATTTCTCGT 58.008 29.630 0.00 7.24 33.44 4.18
1747 5802 9.815936 AACGTAAAATAGGTTTAACATTTCTCG 57.184 29.630 0.00 6.73 33.42 4.04
1754 5809 9.539825 TGTACTCAACGTAAAATAGGTTTAACA 57.460 29.630 0.00 0.00 34.86 2.41
1758 5813 9.933723 AGTATGTACTCAACGTAAAATAGGTTT 57.066 29.630 0.00 0.00 34.86 3.27
1775 5830 2.508716 TGAGACGGAGGGAGTATGTACT 59.491 50.000 0.00 0.00 39.71 2.73
1776 5831 2.928334 TGAGACGGAGGGAGTATGTAC 58.072 52.381 0.00 0.00 0.00 2.90
1777 5832 3.657398 TTGAGACGGAGGGAGTATGTA 57.343 47.619 0.00 0.00 0.00 2.29
1778 5833 2.526888 TTGAGACGGAGGGAGTATGT 57.473 50.000 0.00 0.00 0.00 2.29
1779 5834 3.887621 TTTTGAGACGGAGGGAGTATG 57.112 47.619 0.00 0.00 0.00 2.39
1780 5835 6.555463 TTTATTTTGAGACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
1781 5836 6.070424 ACATTTATTTTGAGACGGAGGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
1782 5837 4.903045 TTTATTTTGAGACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
1783 5838 5.186198 ACATTTATTTTGAGACGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
1784 5839 5.045869 AGACATTTATTTTGAGACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
1785 5840 5.186198 AGACATTTATTTTGAGACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
1786 5841 6.743575 AAGACATTTATTTTGAGACGGAGG 57.256 37.500 0.00 0.00 0.00 4.30
1787 5842 8.936864 AGTTAAGACATTTATTTTGAGACGGAG 58.063 33.333 0.00 0.00 0.00 4.63
1788 5843 8.842358 AGTTAAGACATTTATTTTGAGACGGA 57.158 30.769 0.00 0.00 0.00 4.69
1789 5844 9.893305 AAAGTTAAGACATTTATTTTGAGACGG 57.107 29.630 0.00 0.00 0.00 4.79
1860 5915 5.766670 TGTACTACTCTCTCCGTCTCAAAAA 59.233 40.000 0.00 0.00 0.00 1.94
1861 5916 5.311265 TGTACTACTCTCTCCGTCTCAAAA 58.689 41.667 0.00 0.00 0.00 2.44
1862 5917 4.903054 TGTACTACTCTCTCCGTCTCAAA 58.097 43.478 0.00 0.00 0.00 2.69
1863 5918 4.548451 TGTACTACTCTCTCCGTCTCAA 57.452 45.455 0.00 0.00 0.00 3.02
1864 5919 4.757019 ATGTACTACTCTCTCCGTCTCA 57.243 45.455 0.00 0.00 0.00 3.27
1865 5920 5.846203 AGTATGTACTACTCTCTCCGTCTC 58.154 45.833 0.00 0.00 35.73 3.36
1866 5921 5.874897 AGTATGTACTACTCTCTCCGTCT 57.125 43.478 0.00 0.00 35.73 4.18
1876 5931 4.459330 GAACGGAGGGAGTATGTACTACT 58.541 47.826 2.63 0.00 43.57 2.57
1877 5932 3.249559 CGAACGGAGGGAGTATGTACTAC 59.750 52.174 0.00 0.00 36.50 2.73
1878 5933 3.470709 CGAACGGAGGGAGTATGTACTA 58.529 50.000 0.00 0.00 36.50 1.82
1879 5934 2.295885 CGAACGGAGGGAGTATGTACT 58.704 52.381 0.00 0.00 39.71 2.73
1880 5935 1.336125 CCGAACGGAGGGAGTATGTAC 59.664 57.143 7.53 0.00 37.50 2.90
1881 5936 1.212688 TCCGAACGGAGGGAGTATGTA 59.787 52.381 12.04 0.00 39.76 2.29
1882 5937 0.033796 TCCGAACGGAGGGAGTATGT 60.034 55.000 12.04 0.00 39.76 2.29
1883 5938 1.108776 TTCCGAACGGAGGGAGTATG 58.891 55.000 15.34 0.00 46.06 2.39
1884 5939 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
1885 5940 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1886 5941 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1887 5942 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1888 5943 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1889 5944 2.685850 AAGTAATTCCGAACGGAGGG 57.314 50.000 15.34 0.00 46.06 4.30
1890 5945 5.197682 AGATAAGTAATTCCGAACGGAGG 57.802 43.478 15.34 0.00 46.06 4.30
1891 5946 4.910456 CGAGATAAGTAATTCCGAACGGAG 59.090 45.833 15.34 0.00 46.06 4.63
1892 5947 4.261322 CCGAGATAAGTAATTCCGAACGGA 60.261 45.833 12.04 12.04 43.52 4.69
1893 5948 3.979495 CCGAGATAAGTAATTCCGAACGG 59.021 47.826 6.94 6.94 0.00 4.44
1894 5949 4.852138 TCCGAGATAAGTAATTCCGAACG 58.148 43.478 0.00 0.00 0.00 3.95
1895 5950 7.710766 ATTTCCGAGATAAGTAATTCCGAAC 57.289 36.000 0.00 0.00 0.00 3.95
1896 5951 8.853126 TCTATTTCCGAGATAAGTAATTCCGAA 58.147 33.333 0.00 0.00 0.00 4.30
1897 5952 8.400184 TCTATTTCCGAGATAAGTAATTCCGA 57.600 34.615 0.00 0.00 0.00 4.55
1898 5953 9.077674 CATCTATTTCCGAGATAAGTAATTCCG 57.922 37.037 0.00 0.00 32.27 4.30
1899 5954 9.930693 ACATCTATTTCCGAGATAAGTAATTCC 57.069 33.333 0.00 0.00 32.27 3.01
1951 6006 9.099454 GGAATTACTTGTCGAAGAAATAGATGT 57.901 33.333 0.00 0.00 39.69 3.06
1952 6007 8.269424 CGGAATTACTTGTCGAAGAAATAGATG 58.731 37.037 0.00 0.00 39.69 2.90
1953 6008 8.195436 TCGGAATTACTTGTCGAAGAAATAGAT 58.805 33.333 0.00 0.00 39.69 1.98
1954 6009 7.541162 TCGGAATTACTTGTCGAAGAAATAGA 58.459 34.615 0.00 0.00 39.69 1.98
1955 6010 7.751047 TCGGAATTACTTGTCGAAGAAATAG 57.249 36.000 0.00 0.00 39.69 1.73
1956 6011 7.201376 CGTTCGGAATTACTTGTCGAAGAAATA 60.201 37.037 0.00 0.00 39.69 1.40
1957 6012 6.400727 CGTTCGGAATTACTTGTCGAAGAAAT 60.401 38.462 0.00 0.00 39.69 2.17
1958 6013 5.107760 CGTTCGGAATTACTTGTCGAAGAAA 60.108 40.000 0.00 0.00 39.69 2.52
1959 6014 4.383649 CGTTCGGAATTACTTGTCGAAGAA 59.616 41.667 0.00 0.00 39.69 2.52
1960 6015 3.916172 CGTTCGGAATTACTTGTCGAAGA 59.084 43.478 0.00 0.00 39.89 2.87
1961 6016 3.060363 CCGTTCGGAATTACTTGTCGAAG 59.940 47.826 5.19 0.00 39.89 3.79
1962 6017 2.988493 CCGTTCGGAATTACTTGTCGAA 59.012 45.455 5.19 0.00 37.48 3.71
1963 6018 2.228582 TCCGTTCGGAATTACTTGTCGA 59.771 45.455 11.66 0.00 0.00 4.20
1964 6019 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1965 6020 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1966 6021 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1967 6022 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1968 6023 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1969 6024 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1970 6025 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1971 6026 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1972 6027 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1973 6028 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
1974 6029 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
1975 6030 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
1976 6031 0.969409 AACCTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 0.00 4.30
1977 6032 0.172803 CAACCTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
1978 6033 0.535797 CCAACCTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
1979 6034 0.115745 TCCAACCTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
1980 6035 0.324460 CTCCAACCTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
1981 6036 1.677637 GCTCCAACCTACTCCCTCCG 61.678 65.000 0.00 0.00 0.00 4.63
1982 6037 0.617820 TGCTCCAACCTACTCCCTCC 60.618 60.000 0.00 0.00 0.00 4.30
1983 6038 1.501582 ATGCTCCAACCTACTCCCTC 58.498 55.000 0.00 0.00 0.00 4.30
1984 6039 1.972588 AATGCTCCAACCTACTCCCT 58.027 50.000 0.00 0.00 0.00 4.20
1985 6040 2.808906 AAATGCTCCAACCTACTCCC 57.191 50.000 0.00 0.00 0.00 4.30
1986 6041 3.686016 TGAAAATGCTCCAACCTACTCC 58.314 45.455 0.00 0.00 0.00 3.85
1987 6042 7.391148 TTTATGAAAATGCTCCAACCTACTC 57.609 36.000 0.00 0.00 0.00 2.59
1988 6043 7.775053 TTTTATGAAAATGCTCCAACCTACT 57.225 32.000 0.00 0.00 0.00 2.57
2012 6067 9.911788 AACATACATCAGATGGAGATACTTTTT 57.088 29.630 15.13 0.00 33.60 1.94
2013 6068 9.334947 CAACATACATCAGATGGAGATACTTTT 57.665 33.333 15.13 0.00 33.60 2.27
2014 6069 8.708378 TCAACATACATCAGATGGAGATACTTT 58.292 33.333 15.13 0.00 33.60 2.66
2015 6070 8.255111 TCAACATACATCAGATGGAGATACTT 57.745 34.615 15.13 0.00 33.60 2.24
2016 6071 7.846101 TCAACATACATCAGATGGAGATACT 57.154 36.000 15.13 0.00 33.60 2.12
2019 6074 9.722184 CTTAATCAACATACATCAGATGGAGAT 57.278 33.333 15.13 2.58 33.60 2.75
2020 6075 7.658982 GCTTAATCAACATACATCAGATGGAGA 59.341 37.037 15.13 0.12 33.60 3.71
2021 6076 7.660617 AGCTTAATCAACATACATCAGATGGAG 59.339 37.037 15.13 6.43 33.60 3.86
2022 6077 7.512130 AGCTTAATCAACATACATCAGATGGA 58.488 34.615 15.13 6.56 33.60 3.41
2023 6078 7.741027 AGCTTAATCAACATACATCAGATGG 57.259 36.000 15.13 0.00 33.60 3.51
2031 6086 9.066892 GGGATCAATTAGCTTAATCAACATACA 57.933 33.333 0.00 0.00 0.00 2.29
2032 6087 8.515414 GGGGATCAATTAGCTTAATCAACATAC 58.485 37.037 0.00 0.00 0.00 2.39
2033 6088 7.390440 CGGGGATCAATTAGCTTAATCAACATA 59.610 37.037 0.00 0.00 0.00 2.29
2034 6089 6.207417 CGGGGATCAATTAGCTTAATCAACAT 59.793 38.462 0.00 0.00 0.00 2.71
2035 6090 5.530915 CGGGGATCAATTAGCTTAATCAACA 59.469 40.000 0.00 0.00 0.00 3.33
2036 6091 5.562890 GCGGGGATCAATTAGCTTAATCAAC 60.563 44.000 0.00 0.00 0.00 3.18
2037 6092 4.518970 GCGGGGATCAATTAGCTTAATCAA 59.481 41.667 0.00 0.00 0.00 2.57
2038 6093 4.072131 GCGGGGATCAATTAGCTTAATCA 58.928 43.478 0.00 0.00 0.00 2.57
2039 6094 4.327680 AGCGGGGATCAATTAGCTTAATC 58.672 43.478 0.00 0.00 0.00 1.75
2040 6095 4.042187 AGAGCGGGGATCAATTAGCTTAAT 59.958 41.667 0.00 0.00 34.85 1.40
2041 6096 3.391296 AGAGCGGGGATCAATTAGCTTAA 59.609 43.478 0.00 0.00 34.85 1.85
2042 6097 2.972713 AGAGCGGGGATCAATTAGCTTA 59.027 45.455 0.00 0.00 34.85 3.09
2043 6098 1.771255 AGAGCGGGGATCAATTAGCTT 59.229 47.619 0.00 0.00 34.85 3.74
2044 6099 1.071385 CAGAGCGGGGATCAATTAGCT 59.929 52.381 0.00 0.00 37.69 3.32
2045 6100 1.202698 ACAGAGCGGGGATCAATTAGC 60.203 52.381 0.00 0.00 0.00 3.09
2046 6101 2.918712 ACAGAGCGGGGATCAATTAG 57.081 50.000 0.00 0.00 0.00 1.73
2047 6102 4.641396 CATAACAGAGCGGGGATCAATTA 58.359 43.478 0.00 0.00 0.00 1.40
2048 6103 3.480470 CATAACAGAGCGGGGATCAATT 58.520 45.455 0.00 0.00 0.00 2.32
2049 6104 2.811873 GCATAACAGAGCGGGGATCAAT 60.812 50.000 0.00 0.00 0.00 2.57
2050 6105 1.475034 GCATAACAGAGCGGGGATCAA 60.475 52.381 0.00 0.00 0.00 2.57
2051 6106 0.106708 GCATAACAGAGCGGGGATCA 59.893 55.000 0.00 0.00 0.00 2.92
2052 6107 0.394565 AGCATAACAGAGCGGGGATC 59.605 55.000 0.00 0.00 35.48 3.36
2053 6108 0.107456 CAGCATAACAGAGCGGGGAT 59.893 55.000 0.00 0.00 35.48 3.85
2054 6109 1.522092 CAGCATAACAGAGCGGGGA 59.478 57.895 0.00 0.00 35.48 4.81
2055 6110 2.182842 GCAGCATAACAGAGCGGGG 61.183 63.158 0.00 0.00 35.48 5.73
2056 6111 1.153289 AGCAGCATAACAGAGCGGG 60.153 57.895 0.00 0.00 35.48 6.13
2057 6112 2.012237 CAGCAGCATAACAGAGCGG 58.988 57.895 0.00 0.00 35.48 5.52
2058 6113 1.351012 GCAGCAGCATAACAGAGCG 59.649 57.895 0.00 0.00 41.58 5.03
2059 6114 0.747283 AGGCAGCAGCATAACAGAGC 60.747 55.000 2.65 0.00 44.61 4.09
2060 6115 1.747709 AAGGCAGCAGCATAACAGAG 58.252 50.000 2.65 0.00 44.61 3.35
2061 6116 1.814394 CAAAGGCAGCAGCATAACAGA 59.186 47.619 2.65 0.00 44.61 3.41
2062 6117 1.734707 GCAAAGGCAGCAGCATAACAG 60.735 52.381 2.65 0.00 44.61 3.16
2063 6118 0.244450 GCAAAGGCAGCAGCATAACA 59.756 50.000 2.65 0.00 44.61 2.41
2064 6119 3.040409 GCAAAGGCAGCAGCATAAC 57.960 52.632 2.65 0.00 44.61 1.89
2075 6130 1.288127 CTCACAAGGCTGCAAAGGC 59.712 57.895 0.50 0.00 41.68 4.35
2076 6131 0.538057 TCCTCACAAGGCTGCAAAGG 60.538 55.000 0.50 0.00 43.02 3.11
2077 6132 1.000938 GTTCCTCACAAGGCTGCAAAG 60.001 52.381 0.50 0.00 43.02 2.77
2078 6133 1.032014 GTTCCTCACAAGGCTGCAAA 58.968 50.000 0.50 0.00 43.02 3.68
2079 6134 0.183492 AGTTCCTCACAAGGCTGCAA 59.817 50.000 0.50 0.00 43.02 4.08
2080 6135 0.183492 AAGTTCCTCACAAGGCTGCA 59.817 50.000 0.50 0.00 43.02 4.41
2081 6136 0.877743 GAAGTTCCTCACAAGGCTGC 59.122 55.000 0.00 0.00 43.02 5.25
2082 6137 2.260844 TGAAGTTCCTCACAAGGCTG 57.739 50.000 0.00 0.00 43.02 4.85
2083 6138 2.107204 ACATGAAGTTCCTCACAAGGCT 59.893 45.455 0.00 0.00 43.02 4.58
2084 6139 2.485814 GACATGAAGTTCCTCACAAGGC 59.514 50.000 0.00 0.00 43.02 4.35
2085 6140 4.013267 AGACATGAAGTTCCTCACAAGG 57.987 45.455 0.00 0.00 44.89 3.61
2086 6141 4.932200 GGTAGACATGAAGTTCCTCACAAG 59.068 45.833 0.00 0.00 0.00 3.16
2087 6142 4.593206 AGGTAGACATGAAGTTCCTCACAA 59.407 41.667 0.00 0.00 0.00 3.33
2088 6143 4.021104 CAGGTAGACATGAAGTTCCTCACA 60.021 45.833 0.00 0.00 0.00 3.58
2089 6144 4.021016 ACAGGTAGACATGAAGTTCCTCAC 60.021 45.833 0.00 0.00 0.00 3.51
2090 6145 4.160329 ACAGGTAGACATGAAGTTCCTCA 58.840 43.478 0.00 0.00 0.00 3.86
2091 6146 4.810191 ACAGGTAGACATGAAGTTCCTC 57.190 45.455 0.00 0.00 0.00 3.71
2092 6147 5.780793 AGTAACAGGTAGACATGAAGTTCCT 59.219 40.000 0.00 0.00 0.00 3.36
2093 6148 6.038997 AGTAACAGGTAGACATGAAGTTCC 57.961 41.667 0.00 0.00 0.00 3.62
2094 6149 6.590677 GGAAGTAACAGGTAGACATGAAGTTC 59.409 42.308 0.00 7.21 31.98 3.01
2095 6150 6.270231 AGGAAGTAACAGGTAGACATGAAGTT 59.730 38.462 0.00 0.00 0.00 2.66
2096 6151 5.780793 AGGAAGTAACAGGTAGACATGAAGT 59.219 40.000 0.00 0.00 0.00 3.01
2097 6152 6.153680 AGAGGAAGTAACAGGTAGACATGAAG 59.846 42.308 0.00 0.00 0.00 3.02
2098 6153 6.017192 AGAGGAAGTAACAGGTAGACATGAA 58.983 40.000 0.00 0.00 0.00 2.57
2099 6154 5.580998 AGAGGAAGTAACAGGTAGACATGA 58.419 41.667 0.00 0.00 0.00 3.07
2100 6155 5.923733 AGAGGAAGTAACAGGTAGACATG 57.076 43.478 0.00 0.00 0.00 3.21
2101 6156 6.702329 CAAAGAGGAAGTAACAGGTAGACAT 58.298 40.000 0.00 0.00 0.00 3.06
2102 6157 5.510861 GCAAAGAGGAAGTAACAGGTAGACA 60.511 44.000 0.00 0.00 0.00 3.41
2103 6158 4.930405 GCAAAGAGGAAGTAACAGGTAGAC 59.070 45.833 0.00 0.00 0.00 2.59
2104 6159 4.020485 GGCAAAGAGGAAGTAACAGGTAGA 60.020 45.833 0.00 0.00 0.00 2.59
2105 6160 4.020128 AGGCAAAGAGGAAGTAACAGGTAG 60.020 45.833 0.00 0.00 0.00 3.18
2106 6161 3.908103 AGGCAAAGAGGAAGTAACAGGTA 59.092 43.478 0.00 0.00 0.00 3.08
2107 6162 2.711547 AGGCAAAGAGGAAGTAACAGGT 59.288 45.455 0.00 0.00 0.00 4.00
2108 6163 3.425162 AGGCAAAGAGGAAGTAACAGG 57.575 47.619 0.00 0.00 0.00 4.00
2109 6164 3.753797 GGAAGGCAAAGAGGAAGTAACAG 59.246 47.826 0.00 0.00 0.00 3.16
2110 6165 3.394606 AGGAAGGCAAAGAGGAAGTAACA 59.605 43.478 0.00 0.00 0.00 2.41
2111 6166 3.753797 CAGGAAGGCAAAGAGGAAGTAAC 59.246 47.826 0.00 0.00 0.00 2.50
2112 6167 3.394606 ACAGGAAGGCAAAGAGGAAGTAA 59.605 43.478 0.00 0.00 0.00 2.24
2113 6168 2.979678 ACAGGAAGGCAAAGAGGAAGTA 59.020 45.455 0.00 0.00 0.00 2.24
2114 6169 1.777272 ACAGGAAGGCAAAGAGGAAGT 59.223 47.619 0.00 0.00 0.00 3.01
2115 6170 2.575805 ACAGGAAGGCAAAGAGGAAG 57.424 50.000 0.00 0.00 0.00 3.46
2116 6171 2.979678 ACTACAGGAAGGCAAAGAGGAA 59.020 45.455 0.00 0.00 0.00 3.36
2117 6172 2.621070 ACTACAGGAAGGCAAAGAGGA 58.379 47.619 0.00 0.00 0.00 3.71
2118 6173 3.515901 ACTACTACAGGAAGGCAAAGAGG 59.484 47.826 0.00 0.00 0.00 3.69
2119 6174 4.810191 ACTACTACAGGAAGGCAAAGAG 57.190 45.455 0.00 0.00 0.00 2.85
2120 6175 4.465305 GGTACTACTACAGGAAGGCAAAGA 59.535 45.833 0.00 0.00 0.00 2.52
2121 6176 4.466726 AGGTACTACTACAGGAAGGCAAAG 59.533 45.833 0.00 0.00 36.02 2.77
2122 6177 4.422984 AGGTACTACTACAGGAAGGCAAA 58.577 43.478 0.00 0.00 36.02 3.68
2123 6178 4.021916 GAGGTACTACTACAGGAAGGCAA 58.978 47.826 0.00 0.00 41.55 4.52
2124 6179 3.626729 GGAGGTACTACTACAGGAAGGCA 60.627 52.174 0.00 0.00 41.55 4.75
2125 6180 2.957680 GGAGGTACTACTACAGGAAGGC 59.042 54.545 0.00 0.00 41.55 4.35
2126 6181 3.212685 CGGAGGTACTACTACAGGAAGG 58.787 54.545 0.00 0.00 41.55 3.46
2127 6182 3.876320 GACGGAGGTACTACTACAGGAAG 59.124 52.174 0.00 0.00 41.55 3.46
2128 6183 3.370953 GGACGGAGGTACTACTACAGGAA 60.371 52.174 0.00 0.00 41.55 3.36
2129 6184 2.171448 GGACGGAGGTACTACTACAGGA 59.829 54.545 0.00 0.00 41.55 3.86
2130 6185 2.172293 AGGACGGAGGTACTACTACAGG 59.828 54.545 0.00 0.00 41.55 4.00
2131 6186 3.118482 TCAGGACGGAGGTACTACTACAG 60.118 52.174 0.00 0.00 41.55 2.74
2132 6187 2.840038 TCAGGACGGAGGTACTACTACA 59.160 50.000 0.00 0.00 41.55 2.74
2133 6188 3.550437 TCAGGACGGAGGTACTACTAC 57.450 52.381 0.00 0.00 41.55 2.73
2134 6189 4.785346 AATCAGGACGGAGGTACTACTA 57.215 45.455 0.00 0.00 41.55 1.82
2135 6190 3.666345 AATCAGGACGGAGGTACTACT 57.334 47.619 0.00 0.00 41.55 2.57
2136 6191 6.214399 CAATAAATCAGGACGGAGGTACTAC 58.786 44.000 0.00 0.00 41.55 2.73
2137 6192 5.303589 CCAATAAATCAGGACGGAGGTACTA 59.696 44.000 0.00 0.00 41.55 1.82
2139 6194 4.141779 ACCAATAAATCAGGACGGAGGTAC 60.142 45.833 0.00 0.00 0.00 3.34
2140 6195 4.035112 ACCAATAAATCAGGACGGAGGTA 58.965 43.478 0.00 0.00 0.00 3.08
2141 6196 2.844348 ACCAATAAATCAGGACGGAGGT 59.156 45.455 0.00 0.00 0.00 3.85
2142 6197 3.467803 GACCAATAAATCAGGACGGAGG 58.532 50.000 0.00 0.00 0.00 4.30
2143 6198 3.467803 GGACCAATAAATCAGGACGGAG 58.532 50.000 0.00 0.00 0.00 4.63
2144 6199 2.171870 GGGACCAATAAATCAGGACGGA 59.828 50.000 0.00 0.00 0.00 4.69
2145 6200 2.572290 GGGACCAATAAATCAGGACGG 58.428 52.381 0.00 0.00 0.00 4.79
2161 6216 8.293699 AGTTTGACATAAAATATGAAGGGGAC 57.706 34.615 4.47 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.