Multiple sequence alignment - TraesCS6A01G370900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G370900 chr6A 100.000 2222 0 0 1 2222 595511673 595509452 0.000000e+00 4104
1 TraesCS6A01G370900 chr6A 98.379 1542 24 1 1 1541 472969335 472970876 0.000000e+00 2708
2 TraesCS6A01G370900 chr6A 82.530 498 80 4 1724 2216 602761346 602760851 4.380000e-117 431
3 TraesCS6A01G370900 chr6A 92.350 183 14 0 1541 1723 595517370 595517188 6.090000e-66 261
4 TraesCS6A01G370900 chr1A 95.735 1571 42 4 1 1546 432523244 432524814 0.000000e+00 2507
5 TraesCS6A01G370900 chr1A 97.333 675 17 1 2 675 20992404 20991730 0.000000e+00 1146
6 TraesCS6A01G370900 chr7A 95.167 869 39 3 673 1539 677975067 677975934 0.000000e+00 1369
7 TraesCS6A01G370900 chr7A 97.041 676 19 1 1 675 609346755 609347430 0.000000e+00 1136
8 TraesCS6A01G370900 chr4B 95.040 867 43 0 673 1539 604143656 604144522 0.000000e+00 1363
9 TraesCS6A01G370900 chr3A 95.046 868 41 2 673 1538 11605247 11604380 0.000000e+00 1363
10 TraesCS6A01G370900 chr3A 94.816 868 43 2 673 1538 11598359 11597492 0.000000e+00 1352
11 TraesCS6A01G370900 chr3A 96.893 676 20 1 1 675 11599229 11598554 0.000000e+00 1131
12 TraesCS6A01G370900 chr3A 96.746 676 21 1 1 675 27580775 27581450 0.000000e+00 1125
13 TraesCS6A01G370900 chr5B 94.749 876 44 2 673 1546 492816263 492815388 0.000000e+00 1362
14 TraesCS6A01G370900 chr2A 94.591 869 46 1 673 1541 661122926 661122059 0.000000e+00 1343
15 TraesCS6A01G370900 chr2A 96.598 676 21 2 1 675 767163799 767163125 0.000000e+00 1120
16 TraesCS6A01G370900 chr6B 94.057 875 50 2 673 1546 317212467 317211594 0.000000e+00 1327
17 TraesCS6A01G370900 chr6B 82.424 495 72 9 1727 2216 693333744 693333260 3.410000e-113 418
18 TraesCS6A01G370900 chr6B 93.548 186 12 0 1538 1723 714940963 714941148 6.040000e-71 278
19 TraesCS6A01G370900 chr6B 93.158 190 12 1 1538 1727 714945867 714946055 6.040000e-71 278
20 TraesCS6A01G370900 chr2B 96.603 677 21 2 1 675 721722957 721723633 0.000000e+00 1122
21 TraesCS6A01G370900 chr5A 96.598 676 22 1 1 675 33882153 33881478 0.000000e+00 1120
22 TraesCS6A01G370900 chr6D 92.837 349 25 0 1870 2218 450002609 450002261 7.080000e-140 507
23 TraesCS6A01G370900 chr6D 83.871 496 71 6 1724 2216 456003408 456002919 4.320000e-127 464
24 TraesCS6A01G370900 chr6D 82.816 419 63 7 1724 2137 450010276 450009862 1.250000e-97 366
25 TraesCS6A01G370900 chrUn 80.789 380 48 8 1724 2078 126738149 126738528 7.820000e-70 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G370900 chr6A 595509452 595511673 2221 True 4104.0 4104 100.0000 1 2222 1 chr6A.!!$R1 2221
1 TraesCS6A01G370900 chr6A 472969335 472970876 1541 False 2708.0 2708 98.3790 1 1541 1 chr6A.!!$F1 1540
2 TraesCS6A01G370900 chr1A 432523244 432524814 1570 False 2507.0 2507 95.7350 1 1546 1 chr1A.!!$F1 1545
3 TraesCS6A01G370900 chr1A 20991730 20992404 674 True 1146.0 1146 97.3330 2 675 1 chr1A.!!$R1 673
4 TraesCS6A01G370900 chr7A 677975067 677975934 867 False 1369.0 1369 95.1670 673 1539 1 chr7A.!!$F2 866
5 TraesCS6A01G370900 chr7A 609346755 609347430 675 False 1136.0 1136 97.0410 1 675 1 chr7A.!!$F1 674
6 TraesCS6A01G370900 chr4B 604143656 604144522 866 False 1363.0 1363 95.0400 673 1539 1 chr4B.!!$F1 866
7 TraesCS6A01G370900 chr3A 11604380 11605247 867 True 1363.0 1363 95.0460 673 1538 1 chr3A.!!$R1 865
8 TraesCS6A01G370900 chr3A 11597492 11599229 1737 True 1241.5 1352 95.8545 1 1538 2 chr3A.!!$R2 1537
9 TraesCS6A01G370900 chr3A 27580775 27581450 675 False 1125.0 1125 96.7460 1 675 1 chr3A.!!$F1 674
10 TraesCS6A01G370900 chr5B 492815388 492816263 875 True 1362.0 1362 94.7490 673 1546 1 chr5B.!!$R1 873
11 TraesCS6A01G370900 chr2A 661122059 661122926 867 True 1343.0 1343 94.5910 673 1541 1 chr2A.!!$R1 868
12 TraesCS6A01G370900 chr2A 767163125 767163799 674 True 1120.0 1120 96.5980 1 675 1 chr2A.!!$R2 674
13 TraesCS6A01G370900 chr6B 317211594 317212467 873 True 1327.0 1327 94.0570 673 1546 1 chr6B.!!$R1 873
14 TraesCS6A01G370900 chr2B 721722957 721723633 676 False 1122.0 1122 96.6030 1 675 1 chr2B.!!$F1 674
15 TraesCS6A01G370900 chr5A 33881478 33882153 675 True 1120.0 1120 96.5980 1 675 1 chr5A.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 5.64636 CAGTGTAATACCTGTTCCGGAAAAT 59.354 40.0 20.79 1.39 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1851 0.179043 TGGCGTACAAGCAAGGAACA 60.179 50.0 0.0 0.0 39.27 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 6.485830 AGGAGTAGCTTCAGCATACATTTA 57.514 37.500 0.75 0.00 45.16 1.40
141 142 5.646360 CAGTGTAATACCTGTTCCGGAAAAT 59.354 40.000 20.79 1.39 0.00 1.82
1094 1318 1.153289 CCAGGCAGAAGACGATGGG 60.153 63.158 0.00 0.00 0.00 4.00
1201 1425 4.235360 GCTCGCGATTAGCTTCCTAATAA 58.765 43.478 10.36 0.00 42.76 1.40
1258 1483 8.112183 AGGATGGATTTGTCTGAGATTAGTTTT 58.888 33.333 0.00 0.00 0.00 2.43
1333 1559 8.621286 CCGTGATTATTAGTTTCCTAATTGCTT 58.379 33.333 0.73 0.00 40.25 3.91
1564 1791 9.661954 TTAAGAGTCCATATAATCTCAACCTCT 57.338 33.333 0.00 0.00 0.00 3.69
1565 1792 8.560124 AAGAGTCCATATAATCTCAACCTCTT 57.440 34.615 0.00 0.00 0.00 2.85
1566 1793 8.189119 AGAGTCCATATAATCTCAACCTCTTC 57.811 38.462 0.00 0.00 0.00 2.87
1567 1794 7.234577 AGAGTCCATATAATCTCAACCTCTTCC 59.765 40.741 0.00 0.00 0.00 3.46
1568 1795 7.079048 AGTCCATATAATCTCAACCTCTTCCT 58.921 38.462 0.00 0.00 0.00 3.36
1569 1796 7.016072 AGTCCATATAATCTCAACCTCTTCCTG 59.984 40.741 0.00 0.00 0.00 3.86
1570 1797 6.846505 TCCATATAATCTCAACCTCTTCCTGT 59.153 38.462 0.00 0.00 0.00 4.00
1571 1798 8.010697 TCCATATAATCTCAACCTCTTCCTGTA 58.989 37.037 0.00 0.00 0.00 2.74
1572 1799 8.091449 CCATATAATCTCAACCTCTTCCTGTAC 58.909 40.741 0.00 0.00 0.00 2.90
1573 1800 8.865090 CATATAATCTCAACCTCTTCCTGTACT 58.135 37.037 0.00 0.00 0.00 2.73
1574 1801 7.741554 ATAATCTCAACCTCTTCCTGTACTT 57.258 36.000 0.00 0.00 0.00 2.24
1575 1802 5.669164 ATCTCAACCTCTTCCTGTACTTC 57.331 43.478 0.00 0.00 0.00 3.01
1576 1803 4.742012 TCTCAACCTCTTCCTGTACTTCT 58.258 43.478 0.00 0.00 0.00 2.85
1577 1804 4.524714 TCTCAACCTCTTCCTGTACTTCTG 59.475 45.833 0.00 0.00 0.00 3.02
1578 1805 4.223953 TCAACCTCTTCCTGTACTTCTGT 58.776 43.478 0.00 0.00 0.00 3.41
1579 1806 4.654262 TCAACCTCTTCCTGTACTTCTGTT 59.346 41.667 0.00 0.00 0.00 3.16
1580 1807 5.130477 TCAACCTCTTCCTGTACTTCTGTTT 59.870 40.000 0.00 0.00 0.00 2.83
1581 1808 6.325545 TCAACCTCTTCCTGTACTTCTGTTTA 59.674 38.462 0.00 0.00 0.00 2.01
1582 1809 6.742559 ACCTCTTCCTGTACTTCTGTTTAA 57.257 37.500 0.00 0.00 0.00 1.52
1583 1810 7.133133 ACCTCTTCCTGTACTTCTGTTTAAA 57.867 36.000 0.00 0.00 0.00 1.52
1584 1811 6.990939 ACCTCTTCCTGTACTTCTGTTTAAAC 59.009 38.462 11.54 11.54 0.00 2.01
1585 1812 7.147532 ACCTCTTCCTGTACTTCTGTTTAAACT 60.148 37.037 18.72 1.35 0.00 2.66
1586 1813 7.385478 CCTCTTCCTGTACTTCTGTTTAAACTC 59.615 40.741 18.72 0.00 0.00 3.01
1587 1814 7.215085 TCTTCCTGTACTTCTGTTTAAACTCC 58.785 38.462 18.72 0.00 0.00 3.85
1588 1815 6.742559 TCCTGTACTTCTGTTTAAACTCCT 57.257 37.500 18.72 0.89 0.00 3.69
1589 1816 7.133133 TCCTGTACTTCTGTTTAAACTCCTT 57.867 36.000 18.72 3.21 0.00 3.36
1590 1817 7.571025 TCCTGTACTTCTGTTTAAACTCCTTT 58.429 34.615 18.72 4.17 0.00 3.11
1591 1818 8.050930 TCCTGTACTTCTGTTTAAACTCCTTTT 58.949 33.333 18.72 2.75 0.00 2.27
1592 1819 8.683615 CCTGTACTTCTGTTTAAACTCCTTTTT 58.316 33.333 18.72 1.31 0.00 1.94
1593 1820 9.717892 CTGTACTTCTGTTTAAACTCCTTTTTC 57.282 33.333 18.72 5.13 0.00 2.29
1594 1821 9.457436 TGTACTTCTGTTTAAACTCCTTTTTCT 57.543 29.630 18.72 0.00 0.00 2.52
1595 1822 9.932699 GTACTTCTGTTTAAACTCCTTTTTCTC 57.067 33.333 18.72 0.00 0.00 2.87
1596 1823 8.809468 ACTTCTGTTTAAACTCCTTTTTCTCT 57.191 30.769 18.72 0.00 0.00 3.10
1597 1824 9.244292 ACTTCTGTTTAAACTCCTTTTTCTCTT 57.756 29.630 18.72 0.00 0.00 2.85
1598 1825 9.508567 CTTCTGTTTAAACTCCTTTTTCTCTTG 57.491 33.333 18.72 0.00 0.00 3.02
1599 1826 8.575649 TCTGTTTAAACTCCTTTTTCTCTTGT 57.424 30.769 18.72 0.00 0.00 3.16
1600 1827 9.675464 TCTGTTTAAACTCCTTTTTCTCTTGTA 57.325 29.630 18.72 0.00 0.00 2.41
1604 1831 9.777575 TTTAAACTCCTTTTTCTCTTGTAAACG 57.222 29.630 0.00 0.00 0.00 3.60
1605 1832 7.619964 AAACTCCTTTTTCTCTTGTAAACGA 57.380 32.000 0.00 0.00 0.00 3.85
1606 1833 7.803279 AACTCCTTTTTCTCTTGTAAACGAT 57.197 32.000 0.00 0.00 0.00 3.73
1607 1834 7.422878 ACTCCTTTTTCTCTTGTAAACGATC 57.577 36.000 0.00 0.00 0.00 3.69
1608 1835 6.990349 ACTCCTTTTTCTCTTGTAAACGATCA 59.010 34.615 0.00 0.00 0.00 2.92
1609 1836 7.171678 ACTCCTTTTTCTCTTGTAAACGATCAG 59.828 37.037 0.00 0.00 0.00 2.90
1610 1837 7.214381 TCCTTTTTCTCTTGTAAACGATCAGA 58.786 34.615 0.00 0.00 0.00 3.27
1611 1838 7.878127 TCCTTTTTCTCTTGTAAACGATCAGAT 59.122 33.333 0.00 0.00 0.00 2.90
1612 1839 8.171840 CCTTTTTCTCTTGTAAACGATCAGATC 58.828 37.037 0.00 0.00 0.00 2.75
1613 1840 8.601845 TTTTTCTCTTGTAAACGATCAGATCA 57.398 30.769 11.12 0.00 0.00 2.92
1614 1841 7.818493 TTTCTCTTGTAAACGATCAGATCAG 57.182 36.000 11.12 6.05 0.00 2.90
1615 1842 6.759497 TCTCTTGTAAACGATCAGATCAGA 57.241 37.500 11.12 3.18 0.00 3.27
1616 1843 7.158099 TCTCTTGTAAACGATCAGATCAGAA 57.842 36.000 11.12 0.00 0.00 3.02
1617 1844 7.254137 TCTCTTGTAAACGATCAGATCAGAAG 58.746 38.462 11.12 5.35 0.00 2.85
1618 1845 6.333416 TCTTGTAAACGATCAGATCAGAAGG 58.667 40.000 11.12 0.00 0.00 3.46
1619 1846 5.661056 TGTAAACGATCAGATCAGAAGGT 57.339 39.130 11.12 0.00 0.00 3.50
1620 1847 5.651530 TGTAAACGATCAGATCAGAAGGTC 58.348 41.667 11.12 0.00 0.00 3.85
1621 1848 3.428746 AACGATCAGATCAGAAGGTCG 57.571 47.619 11.12 7.74 0.00 4.79
1622 1849 2.644676 ACGATCAGATCAGAAGGTCGA 58.355 47.619 14.23 0.00 0.00 4.20
1623 1850 3.218453 ACGATCAGATCAGAAGGTCGAT 58.782 45.455 14.23 0.02 0.00 3.59
1624 1851 3.634448 ACGATCAGATCAGAAGGTCGATT 59.366 43.478 14.23 0.00 0.00 3.34
1625 1852 3.980134 CGATCAGATCAGAAGGTCGATTG 59.020 47.826 11.12 0.00 0.00 2.67
1626 1853 4.498850 CGATCAGATCAGAAGGTCGATTGT 60.499 45.833 11.12 0.00 0.00 2.71
1627 1854 4.808414 TCAGATCAGAAGGTCGATTGTT 57.192 40.909 0.00 0.00 0.00 2.83
1628 1855 4.748892 TCAGATCAGAAGGTCGATTGTTC 58.251 43.478 0.00 0.00 0.00 3.18
1629 1856 3.868077 CAGATCAGAAGGTCGATTGTTCC 59.132 47.826 0.00 0.00 0.00 3.62
1630 1857 3.772025 AGATCAGAAGGTCGATTGTTCCT 59.228 43.478 0.00 0.00 0.00 3.36
1631 1858 4.223923 AGATCAGAAGGTCGATTGTTCCTT 59.776 41.667 4.05 4.05 43.20 3.36
1632 1859 3.664107 TCAGAAGGTCGATTGTTCCTTG 58.336 45.455 8.85 0.00 41.00 3.61
1633 1860 2.160417 CAGAAGGTCGATTGTTCCTTGC 59.840 50.000 8.85 2.21 41.00 4.01
1634 1861 2.039084 AGAAGGTCGATTGTTCCTTGCT 59.961 45.455 8.85 4.15 41.00 3.91
1635 1862 2.568623 AGGTCGATTGTTCCTTGCTT 57.431 45.000 0.00 0.00 0.00 3.91
1636 1863 2.154462 AGGTCGATTGTTCCTTGCTTG 58.846 47.619 0.00 0.00 0.00 4.01
1637 1864 1.880027 GGTCGATTGTTCCTTGCTTGT 59.120 47.619 0.00 0.00 0.00 3.16
1638 1865 3.071479 GGTCGATTGTTCCTTGCTTGTA 58.929 45.455 0.00 0.00 0.00 2.41
1639 1866 3.120304 GGTCGATTGTTCCTTGCTTGTAC 60.120 47.826 0.00 0.00 0.00 2.90
1640 1867 2.734606 TCGATTGTTCCTTGCTTGTACG 59.265 45.455 0.00 0.00 0.00 3.67
1641 1868 2.724839 CGATTGTTCCTTGCTTGTACGC 60.725 50.000 0.00 0.00 0.00 4.42
1642 1869 0.948678 TTGTTCCTTGCTTGTACGCC 59.051 50.000 0.00 0.00 0.00 5.68
1643 1870 0.179043 TGTTCCTTGCTTGTACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
1644 1871 0.237498 GTTCCTTGCTTGTACGCCAC 59.763 55.000 0.00 0.00 0.00 5.01
1645 1872 1.225376 TTCCTTGCTTGTACGCCACG 61.225 55.000 0.00 0.00 0.00 4.94
1646 1873 1.666553 CCTTGCTTGTACGCCACGA 60.667 57.895 0.00 0.00 0.00 4.35
1647 1874 1.491563 CTTGCTTGTACGCCACGAC 59.508 57.895 0.00 0.00 0.00 4.34
1648 1875 2.210524 CTTGCTTGTACGCCACGACG 62.211 60.000 0.00 0.00 39.50 5.12
1649 1876 2.429571 GCTTGTACGCCACGACGA 60.430 61.111 0.00 0.00 36.70 4.20
1650 1877 2.434134 GCTTGTACGCCACGACGAG 61.434 63.158 0.00 0.00 36.70 4.18
1651 1878 1.800315 CTTGTACGCCACGACGAGG 60.800 63.158 6.99 6.99 36.70 4.63
1652 1879 3.271706 TTGTACGCCACGACGAGGG 62.272 63.158 13.38 9.45 36.70 4.30
1658 1885 2.579201 CCACGACGAGGGCATCTT 59.421 61.111 0.00 0.00 0.00 2.40
1659 1886 1.519455 CCACGACGAGGGCATCTTC 60.519 63.158 0.00 0.00 0.00 2.87
1660 1887 1.513158 CACGACGAGGGCATCTTCT 59.487 57.895 0.00 0.00 0.00 2.85
1661 1888 0.526524 CACGACGAGGGCATCTTCTC 60.527 60.000 0.00 0.00 0.00 2.87
1664 1891 4.719997 CGAGGGCATCTTCTCGTC 57.280 61.111 0.00 0.00 45.27 4.20
1665 1892 1.066587 CGAGGGCATCTTCTCGTCC 59.933 63.158 0.00 0.00 45.27 4.79
1666 1893 1.443828 GAGGGCATCTTCTCGTCCC 59.556 63.158 0.00 0.00 37.24 4.46
1667 1894 2.034048 GAGGGCATCTTCTCGTCCCC 62.034 65.000 0.00 0.00 37.70 4.81
1668 1895 2.367202 GGGCATCTTCTCGTCCCCA 61.367 63.158 0.00 0.00 32.71 4.96
1669 1896 1.602237 GGCATCTTCTCGTCCCCAA 59.398 57.895 0.00 0.00 0.00 4.12
1670 1897 0.181350 GGCATCTTCTCGTCCCCAAT 59.819 55.000 0.00 0.00 0.00 3.16
1671 1898 1.416401 GGCATCTTCTCGTCCCCAATA 59.584 52.381 0.00 0.00 0.00 1.90
1672 1899 2.039084 GGCATCTTCTCGTCCCCAATAT 59.961 50.000 0.00 0.00 0.00 1.28
1673 1900 3.260884 GGCATCTTCTCGTCCCCAATATA 59.739 47.826 0.00 0.00 0.00 0.86
1674 1901 4.080863 GGCATCTTCTCGTCCCCAATATAT 60.081 45.833 0.00 0.00 0.00 0.86
1675 1902 5.128827 GGCATCTTCTCGTCCCCAATATATA 59.871 44.000 0.00 0.00 0.00 0.86
1676 1903 6.043411 GCATCTTCTCGTCCCCAATATATAC 58.957 44.000 0.00 0.00 0.00 1.47
1677 1904 6.351033 GCATCTTCTCGTCCCCAATATATACA 60.351 42.308 0.00 0.00 0.00 2.29
1678 1905 7.633772 GCATCTTCTCGTCCCCAATATATACAT 60.634 40.741 0.00 0.00 0.00 2.29
1679 1906 8.914011 CATCTTCTCGTCCCCAATATATACATA 58.086 37.037 0.00 0.00 0.00 2.29
1680 1907 8.289939 TCTTCTCGTCCCCAATATATACATAC 57.710 38.462 0.00 0.00 0.00 2.39
1681 1908 7.341256 TCTTCTCGTCCCCAATATATACATACC 59.659 40.741 0.00 0.00 0.00 2.73
1682 1909 6.495847 TCTCGTCCCCAATATATACATACCA 58.504 40.000 0.00 0.00 0.00 3.25
1683 1910 7.130099 TCTCGTCCCCAATATATACATACCAT 58.870 38.462 0.00 0.00 0.00 3.55
1684 1911 7.069455 TCTCGTCCCCAATATATACATACCATG 59.931 40.741 0.00 0.00 0.00 3.66
1685 1912 6.670464 TCGTCCCCAATATATACATACCATGT 59.330 38.462 0.00 0.00 46.92 3.21
1686 1913 6.761242 CGTCCCCAATATATACATACCATGTG 59.239 42.308 2.07 0.00 44.60 3.21
1687 1914 7.054124 GTCCCCAATATATACATACCATGTGG 58.946 42.308 2.07 0.00 44.60 4.17
1688 1915 5.827797 CCCCAATATATACATACCATGTGGC 59.172 44.000 0.00 0.00 44.60 5.01
1689 1916 6.353864 CCCCAATATATACATACCATGTGGCT 60.354 42.308 0.00 0.00 44.60 4.75
1690 1917 6.767902 CCCAATATATACATACCATGTGGCTC 59.232 42.308 0.00 0.00 44.60 4.70
1691 1918 7.365921 CCCAATATATACATACCATGTGGCTCT 60.366 40.741 0.00 0.00 44.60 4.09
1692 1919 7.712639 CCAATATATACATACCATGTGGCTCTC 59.287 40.741 0.00 0.00 44.60 3.20
1693 1920 8.481314 CAATATATACATACCATGTGGCTCTCT 58.519 37.037 0.00 0.00 44.60 3.10
1694 1921 4.881019 ATACATACCATGTGGCTCTCTC 57.119 45.455 0.00 0.00 44.60 3.20
1695 1922 1.410517 ACATACCATGTGGCTCTCTCG 59.589 52.381 0.00 0.00 43.01 4.04
1696 1923 1.683385 CATACCATGTGGCTCTCTCGA 59.317 52.381 0.00 0.00 39.32 4.04
1697 1924 1.393603 TACCATGTGGCTCTCTCGAG 58.606 55.000 5.93 5.93 39.32 4.04
1698 1925 1.326213 ACCATGTGGCTCTCTCGAGG 61.326 60.000 13.56 3.44 39.32 4.63
1699 1926 1.039785 CCATGTGGCTCTCTCGAGGA 61.040 60.000 13.56 7.97 37.75 3.71
1700 1927 0.385029 CATGTGGCTCTCTCGAGGAG 59.615 60.000 20.35 20.35 43.12 3.69
1701 1928 0.033601 ATGTGGCTCTCTCGAGGAGT 60.034 55.000 23.36 8.25 42.40 3.85
1702 1929 0.618981 TGTGGCTCTCTCGAGGAGTA 59.381 55.000 23.36 14.66 42.40 2.59
1703 1930 1.305201 GTGGCTCTCTCGAGGAGTAG 58.695 60.000 23.36 11.36 42.40 2.57
1704 1931 0.181587 TGGCTCTCTCGAGGAGTAGG 59.818 60.000 23.36 11.90 42.40 3.18
1705 1932 0.470766 GGCTCTCTCGAGGAGTAGGA 59.529 60.000 23.36 9.50 42.40 2.94
1706 1933 1.134037 GGCTCTCTCGAGGAGTAGGAA 60.134 57.143 23.36 0.45 42.40 3.36
1707 1934 1.944709 GCTCTCTCGAGGAGTAGGAAC 59.055 57.143 23.36 9.20 42.40 3.62
1708 1935 2.206750 CTCTCTCGAGGAGTAGGAACG 58.793 57.143 13.56 0.00 42.40 3.95
1709 1936 1.554160 TCTCTCGAGGAGTAGGAACGT 59.446 52.381 13.56 0.00 42.40 3.99
1710 1937 2.027377 TCTCTCGAGGAGTAGGAACGTT 60.027 50.000 13.56 0.00 42.40 3.99
1711 1938 2.748532 CTCTCGAGGAGTAGGAACGTTT 59.251 50.000 13.56 0.00 37.30 3.60
1712 1939 2.746362 TCTCGAGGAGTAGGAACGTTTC 59.254 50.000 13.56 0.00 0.00 2.78
1713 1940 6.209642 CTCTCGAGGAGTAGGAACGTTTCC 62.210 54.167 13.56 4.90 42.27 3.13
1727 1954 6.644191 GAACGTTTCCAACCTAATAGAGAC 57.356 41.667 0.46 0.00 0.00 3.36
1728 1955 5.082251 ACGTTTCCAACCTAATAGAGACC 57.918 43.478 0.00 0.00 0.00 3.85
1729 1956 4.529377 ACGTTTCCAACCTAATAGAGACCA 59.471 41.667 0.00 0.00 0.00 4.02
1730 1957 5.109903 CGTTTCCAACCTAATAGAGACCAG 58.890 45.833 0.00 0.00 0.00 4.00
1731 1958 5.105473 CGTTTCCAACCTAATAGAGACCAGA 60.105 44.000 0.00 0.00 0.00 3.86
1732 1959 6.342111 GTTTCCAACCTAATAGAGACCAGAG 58.658 44.000 0.00 0.00 0.00 3.35
1733 1960 3.961408 TCCAACCTAATAGAGACCAGAGC 59.039 47.826 0.00 0.00 0.00 4.09
1734 1961 3.243569 CCAACCTAATAGAGACCAGAGCG 60.244 52.174 0.00 0.00 0.00 5.03
1735 1962 2.588620 ACCTAATAGAGACCAGAGCGG 58.411 52.381 0.00 0.00 42.50 5.52
1736 1963 1.271102 CCTAATAGAGACCAGAGCGGC 59.729 57.143 0.00 0.00 39.03 6.53
1737 1964 0.952280 TAATAGAGACCAGAGCGGCG 59.048 55.000 0.51 0.51 39.03 6.46
1738 1965 0.752009 AATAGAGACCAGAGCGGCGA 60.752 55.000 12.98 0.00 39.03 5.54
1739 1966 1.448922 ATAGAGACCAGAGCGGCGAC 61.449 60.000 12.98 3.29 39.03 5.19
1740 1967 4.500116 GAGACCAGAGCGGCGACC 62.500 72.222 12.98 0.00 39.03 4.79
1751 1978 4.521062 GGCGACCGCATCAGCTCT 62.521 66.667 16.47 0.00 44.11 4.09
1752 1979 2.959071 GCGACCGCATCAGCTCTC 60.959 66.667 9.73 0.00 41.49 3.20
1753 1980 2.804167 CGACCGCATCAGCTCTCT 59.196 61.111 0.00 0.00 39.10 3.10
1754 1981 1.299014 CGACCGCATCAGCTCTCTC 60.299 63.158 0.00 0.00 39.10 3.20
1755 1982 1.067250 GACCGCATCAGCTCTCTCC 59.933 63.158 0.00 0.00 39.10 3.71
1756 1983 2.362329 GACCGCATCAGCTCTCTCCC 62.362 65.000 0.00 0.00 39.10 4.30
1757 1984 2.027314 CGCATCAGCTCTCTCCCG 59.973 66.667 0.00 0.00 39.10 5.14
1758 1985 2.420890 GCATCAGCTCTCTCCCGG 59.579 66.667 0.00 0.00 37.91 5.73
1759 1986 2.130426 GCATCAGCTCTCTCCCGGA 61.130 63.158 0.73 0.00 37.91 5.14
1760 1987 1.739049 CATCAGCTCTCTCCCGGAC 59.261 63.158 0.73 0.00 0.00 4.79
1761 1988 1.826054 ATCAGCTCTCTCCCGGACG 60.826 63.158 0.73 0.00 0.00 4.79
1762 1989 3.522731 CAGCTCTCTCCCGGACGG 61.523 72.222 0.73 3.25 0.00 4.79
1763 1990 4.049817 AGCTCTCTCCCGGACGGT 62.050 66.667 0.73 0.00 0.00 4.83
1764 1991 3.519930 GCTCTCTCCCGGACGGTC 61.520 72.222 0.73 0.00 0.00 4.79
1765 1992 2.272797 CTCTCTCCCGGACGGTCT 59.727 66.667 0.73 0.00 0.00 3.85
1766 1993 2.045242 TCTCTCCCGGACGGTCTG 60.045 66.667 0.73 10.06 0.00 3.51
1767 1994 3.827898 CTCTCCCGGACGGTCTGC 61.828 72.222 11.55 0.00 0.00 4.26
1768 1995 4.361971 TCTCCCGGACGGTCTGCT 62.362 66.667 11.55 0.00 0.00 4.24
1769 1996 3.827898 CTCCCGGACGGTCTGCTC 61.828 72.222 11.55 0.00 0.00 4.26
1772 1999 4.436998 CCGGACGGTCTGCTCCAC 62.437 72.222 11.55 0.00 0.00 4.02
1773 2000 4.436998 CGGACGGTCTGCTCCACC 62.437 72.222 8.23 0.00 0.00 4.61
1774 2001 3.311110 GGACGGTCTGCTCCACCA 61.311 66.667 8.23 0.00 32.89 4.17
1775 2002 2.262915 GACGGTCTGCTCCACCAG 59.737 66.667 0.00 0.00 32.89 4.00
1776 2003 3.302347 GACGGTCTGCTCCACCAGG 62.302 68.421 0.00 0.00 32.89 4.45
1777 2004 3.314331 CGGTCTGCTCCACCAGGT 61.314 66.667 0.00 0.00 32.89 4.00
1778 2005 2.665603 GGTCTGCTCCACCAGGTC 59.334 66.667 0.00 0.00 33.63 3.85
1779 2006 2.665603 GTCTGCTCCACCAGGTCC 59.334 66.667 0.00 0.00 35.89 4.46
1780 2007 1.915769 GTCTGCTCCACCAGGTCCT 60.916 63.158 0.00 0.00 35.89 3.85
1781 2008 1.152030 TCTGCTCCACCAGGTCCTT 60.152 57.895 0.00 0.00 35.89 3.36
1782 2009 1.194781 TCTGCTCCACCAGGTCCTTC 61.195 60.000 0.00 0.00 35.89 3.46
1783 2010 1.152030 TGCTCCACCAGGTCCTTCT 60.152 57.895 0.00 0.00 35.89 2.85
1784 2011 1.194781 TGCTCCACCAGGTCCTTCTC 61.195 60.000 0.00 0.00 35.89 2.87
1785 2012 1.904990 GCTCCACCAGGTCCTTCTCC 61.905 65.000 0.00 0.00 35.89 3.71
1786 2013 1.608717 CTCCACCAGGTCCTTCTCCG 61.609 65.000 0.00 0.00 35.89 4.63
1787 2014 2.660064 CCACCAGGTCCTTCTCCGG 61.660 68.421 0.00 0.00 0.00 5.14
1788 2015 3.003763 ACCAGGTCCTTCTCCGGC 61.004 66.667 0.00 0.00 0.00 6.13
1789 2016 2.685380 CCAGGTCCTTCTCCGGCT 60.685 66.667 0.00 0.00 0.00 5.52
1790 2017 2.726351 CCAGGTCCTTCTCCGGCTC 61.726 68.421 0.00 0.00 0.00 4.70
1791 2018 2.364448 AGGTCCTTCTCCGGCTCC 60.364 66.667 0.00 0.00 0.00 4.70
1792 2019 3.839432 GGTCCTTCTCCGGCTCCG 61.839 72.222 0.00 0.48 39.44 4.63
1793 2020 4.516195 GTCCTTCTCCGGCTCCGC 62.516 72.222 0.00 0.00 38.24 5.54
1794 2021 4.761058 TCCTTCTCCGGCTCCGCT 62.761 66.667 0.00 0.00 38.24 5.52
1795 2022 4.521062 CCTTCTCCGGCTCCGCTG 62.521 72.222 0.00 0.00 38.24 5.18
1852 2079 3.503363 GTGGCGCCATGTCTGCTC 61.503 66.667 35.23 13.61 0.00 4.26
1853 2080 4.783621 TGGCGCCATGTCTGCTCC 62.784 66.667 29.03 0.00 34.18 4.70
1858 2085 3.790437 CCATGTCTGCTCCGGCCT 61.790 66.667 0.00 0.00 37.74 5.19
1859 2086 2.202987 CATGTCTGCTCCGGCCTC 60.203 66.667 0.00 0.00 37.74 4.70
1860 2087 3.474570 ATGTCTGCTCCGGCCTCC 61.475 66.667 0.00 0.00 37.74 4.30
1879 2106 3.667282 CGTGGTCGACGTCACCCT 61.667 66.667 24.85 0.00 43.50 4.34
1880 2107 2.257676 GTGGTCGACGTCACCCTC 59.742 66.667 24.85 16.61 32.24 4.30
1881 2108 2.203379 TGGTCGACGTCACCCTCA 60.203 61.111 24.85 10.85 32.24 3.86
1882 2109 1.829096 TGGTCGACGTCACCCTCAA 60.829 57.895 24.85 10.89 32.24 3.02
1883 2110 1.372623 GGTCGACGTCACCCTCAAC 60.373 63.158 17.16 1.58 0.00 3.18
1884 2111 1.728426 GTCGACGTCACCCTCAACG 60.728 63.158 17.16 0.00 44.22 4.10
1885 2112 1.893335 TCGACGTCACCCTCAACGA 60.893 57.895 17.16 0.79 41.29 3.85
1886 2113 1.728426 CGACGTCACCCTCAACGAC 60.728 63.158 17.16 0.00 41.29 4.34
1888 2115 2.333938 CGTCACCCTCAACGACGT 59.666 61.111 0.00 0.00 45.59 4.34
1889 2116 1.728426 CGTCACCCTCAACGACGTC 60.728 63.158 5.18 5.18 45.59 4.34
1890 2117 1.372623 GTCACCCTCAACGACGTCC 60.373 63.158 10.58 0.00 0.00 4.79
1891 2118 2.048503 CACCCTCAACGACGTCCC 60.049 66.667 10.58 0.00 0.00 4.46
1892 2119 3.677648 ACCCTCAACGACGTCCCG 61.678 66.667 10.58 1.95 0.00 5.14
1894 2121 4.052229 CCTCAACGACGTCCCGCT 62.052 66.667 10.58 0.00 0.00 5.52
1895 2122 2.504244 CTCAACGACGTCCCGCTC 60.504 66.667 10.58 0.00 0.00 5.03
1896 2123 4.394078 TCAACGACGTCCCGCTCG 62.394 66.667 10.58 0.00 36.83 5.03
1907 2134 4.521062 CCGCTCGGCTCCCTTGAG 62.521 72.222 0.00 0.00 41.84 3.02
1908 2135 4.521062 CGCTCGGCTCCCTTGAGG 62.521 72.222 0.00 0.00 39.14 3.86
1914 2141 4.847444 GCTCCCTTGAGGCCGCTC 62.847 72.222 8.34 0.00 39.14 5.03
1915 2142 3.080121 CTCCCTTGAGGCCGCTCT 61.080 66.667 8.34 0.00 34.80 4.09
1916 2143 3.077556 TCCCTTGAGGCCGCTCTC 61.078 66.667 8.34 0.00 34.51 3.20
1917 2144 4.168291 CCCTTGAGGCCGCTCTCC 62.168 72.222 8.34 0.00 33.04 3.71
1918 2145 4.521062 CCTTGAGGCCGCTCTCCG 62.521 72.222 8.34 0.00 33.04 4.63
1954 2181 4.148825 GGTGCGCCTCCTCGACAT 62.149 66.667 9.68 0.00 0.00 3.06
1955 2182 2.583593 GTGCGCCTCCTCGACATC 60.584 66.667 4.18 0.00 0.00 3.06
1956 2183 3.838271 TGCGCCTCCTCGACATCC 61.838 66.667 4.18 0.00 0.00 3.51
1957 2184 4.933064 GCGCCTCCTCGACATCCG 62.933 72.222 0.00 0.00 40.25 4.18
1958 2185 3.518998 CGCCTCCTCGACATCCGT 61.519 66.667 0.00 0.00 39.75 4.69
1959 2186 2.105128 GCCTCCTCGACATCCGTG 59.895 66.667 0.00 0.00 39.75 4.94
1960 2187 2.711922 GCCTCCTCGACATCCGTGT 61.712 63.158 0.00 0.00 42.49 4.49
1978 2205 4.479993 CCCGGAAGAGGGCAGCAG 62.480 72.222 0.73 0.00 45.72 4.24
1979 2206 4.479993 CCGGAAGAGGGCAGCAGG 62.480 72.222 0.00 0.00 0.00 4.85
1981 2208 3.726144 GGAAGAGGGCAGCAGGCT 61.726 66.667 1.94 0.00 44.01 4.58
1982 2209 2.438075 GAAGAGGGCAGCAGGCTG 60.438 66.667 16.68 16.68 46.15 4.85
2000 2227 4.899239 CCCGCCGACAGCATCTCC 62.899 72.222 0.00 0.00 44.04 3.71
2001 2228 4.147449 CCGCCGACAGCATCTCCA 62.147 66.667 0.00 0.00 44.04 3.86
2002 2229 2.887568 CGCCGACAGCATCTCCAC 60.888 66.667 0.00 0.00 44.04 4.02
2003 2230 2.887568 GCCGACAGCATCTCCACG 60.888 66.667 0.00 0.00 42.97 4.94
2004 2231 2.202797 CCGACAGCATCTCCACGG 60.203 66.667 0.00 0.00 34.77 4.94
2005 2232 2.573869 CGACAGCATCTCCACGGT 59.426 61.111 0.00 0.00 0.00 4.83
2006 2233 1.079819 CGACAGCATCTCCACGGTT 60.080 57.895 0.00 0.00 0.00 4.44
2007 2234 1.078759 CGACAGCATCTCCACGGTTC 61.079 60.000 0.00 0.00 0.00 3.62
2008 2235 0.247736 GACAGCATCTCCACGGTTCT 59.752 55.000 0.00 0.00 0.00 3.01
2009 2236 0.247736 ACAGCATCTCCACGGTTCTC 59.752 55.000 0.00 0.00 0.00 2.87
2010 2237 0.460987 CAGCATCTCCACGGTTCTCC 60.461 60.000 0.00 0.00 0.00 3.71
2053 2280 3.394836 GGAGCTCCGCTTCACCCT 61.395 66.667 19.06 0.00 39.88 4.34
2054 2281 2.185608 GAGCTCCGCTTCACCCTC 59.814 66.667 0.87 0.00 39.88 4.30
2055 2282 2.604686 AGCTCCGCTTCACCCTCA 60.605 61.111 0.00 0.00 33.89 3.86
2056 2283 2.435059 GCTCCGCTTCACCCTCAC 60.435 66.667 0.00 0.00 0.00 3.51
2057 2284 2.125912 CTCCGCTTCACCCTCACG 60.126 66.667 0.00 0.00 0.00 4.35
2058 2285 4.373116 TCCGCTTCACCCTCACGC 62.373 66.667 0.00 0.00 0.00 5.34
2061 2288 4.681978 GCTTCACCCTCACGCGGT 62.682 66.667 12.47 0.00 0.00 5.68
2062 2289 2.967397 CTTCACCCTCACGCGGTA 59.033 61.111 12.47 0.00 30.42 4.02
2063 2290 1.445582 CTTCACCCTCACGCGGTAC 60.446 63.158 12.47 0.00 30.42 3.34
2076 2303 2.126189 GGTACGTGGACTGGACGC 60.126 66.667 0.00 0.00 40.56 5.19
2077 2304 2.503375 GTACGTGGACTGGACGCG 60.503 66.667 3.53 3.53 46.32 6.01
2078 2305 4.409218 TACGTGGACTGGACGCGC 62.409 66.667 5.73 0.00 44.92 6.86
2084 2311 3.845259 GACTGGACGCGCCCCATA 61.845 66.667 19.21 0.00 34.97 2.74
2085 2312 4.157120 ACTGGACGCGCCCCATAC 62.157 66.667 19.21 0.00 34.97 2.39
2086 2313 4.155733 CTGGACGCGCCCCATACA 62.156 66.667 19.21 0.00 34.97 2.29
2087 2314 4.155733 TGGACGCGCCCCATACAG 62.156 66.667 9.62 0.00 34.97 2.74
2089 2316 4.530857 GACGCGCCCCATACAGCT 62.531 66.667 5.73 0.00 0.00 4.24
2090 2317 4.838152 ACGCGCCCCATACAGCTG 62.838 66.667 13.48 13.48 0.00 4.24
2093 2320 4.181010 CGCCCCATACAGCTGCCT 62.181 66.667 15.27 0.00 0.00 4.75
2094 2321 2.276740 GCCCCATACAGCTGCCTT 59.723 61.111 15.27 0.00 0.00 4.35
2095 2322 2.123428 GCCCCATACAGCTGCCTTG 61.123 63.158 15.27 8.87 0.00 3.61
2096 2323 2.123428 CCCCATACAGCTGCCTTGC 61.123 63.158 15.27 0.00 0.00 4.01
2097 2324 2.123428 CCCATACAGCTGCCTTGCC 61.123 63.158 15.27 0.00 0.00 4.52
2098 2325 1.077212 CCATACAGCTGCCTTGCCT 60.077 57.895 15.27 0.00 0.00 4.75
2099 2326 0.682209 CCATACAGCTGCCTTGCCTT 60.682 55.000 15.27 0.00 0.00 4.35
2100 2327 0.737219 CATACAGCTGCCTTGCCTTC 59.263 55.000 15.27 0.00 0.00 3.46
2101 2328 0.329261 ATACAGCTGCCTTGCCTTCA 59.671 50.000 15.27 0.00 0.00 3.02
2102 2329 0.606401 TACAGCTGCCTTGCCTTCAC 60.606 55.000 15.27 0.00 0.00 3.18
2103 2330 2.282745 AGCTGCCTTGCCTTCACC 60.283 61.111 0.00 0.00 0.00 4.02
2104 2331 3.741476 GCTGCCTTGCCTTCACCG 61.741 66.667 0.00 0.00 0.00 4.94
2105 2332 3.741476 CTGCCTTGCCTTCACCGC 61.741 66.667 0.00 0.00 0.00 5.68
2122 2349 3.893763 CGCCACCTCGATCGAGCT 61.894 66.667 34.54 22.09 40.69 4.09
2123 2350 2.279120 GCCACCTCGATCGAGCTG 60.279 66.667 34.54 30.29 40.69 4.24
2124 2351 2.279120 CCACCTCGATCGAGCTGC 60.279 66.667 34.54 0.00 40.69 5.25
2125 2352 2.653448 CACCTCGATCGAGCTGCG 60.653 66.667 34.54 24.24 40.69 5.18
2126 2353 4.560856 ACCTCGATCGAGCTGCGC 62.561 66.667 34.54 0.00 40.69 6.09
2147 2374 4.643385 GTGTCGCCGCACGTGTTG 62.643 66.667 18.38 10.14 44.19 3.33
2149 2376 3.932313 GTCGCCGCACGTGTTGTT 61.932 61.111 18.38 0.00 44.19 2.83
2150 2377 3.931130 TCGCCGCACGTGTTGTTG 61.931 61.111 18.38 4.09 44.19 3.33
2151 2378 4.230863 CGCCGCACGTGTTGTTGT 62.231 61.111 18.38 0.00 36.87 3.32
2152 2379 2.101380 GCCGCACGTGTTGTTGTT 59.899 55.556 18.38 0.00 0.00 2.83
2153 2380 2.220887 GCCGCACGTGTTGTTGTTG 61.221 57.895 18.38 0.00 0.00 3.33
2154 2381 2.220887 CCGCACGTGTTGTTGTTGC 61.221 57.895 18.38 0.00 0.00 4.17
2155 2382 2.554947 CGCACGTGTTGTTGTTGCG 61.555 57.895 18.38 7.16 37.93 4.85
2156 2383 2.844685 GCACGTGTTGTTGTTGCGC 61.845 57.895 18.38 0.00 0.00 6.09
2157 2384 2.276994 ACGTGTTGTTGTTGCGCG 60.277 55.556 0.00 0.00 41.22 6.86
2158 2385 3.667486 CGTGTTGTTGTTGCGCGC 61.667 61.111 27.26 27.26 0.00 6.86
2159 2386 2.277884 GTGTTGTTGTTGCGCGCT 60.278 55.556 33.29 0.00 0.00 5.92
2160 2387 2.024022 TGTTGTTGTTGCGCGCTC 59.976 55.556 33.29 24.10 0.00 5.03
2161 2388 2.024022 GTTGTTGTTGCGCGCTCA 59.976 55.556 33.29 26.37 0.00 4.26
2162 2389 1.370414 GTTGTTGTTGCGCGCTCAT 60.370 52.632 33.29 0.00 0.00 2.90
2163 2390 0.934436 GTTGTTGTTGCGCGCTCATT 60.934 50.000 33.29 0.00 0.00 2.57
2164 2391 0.660005 TTGTTGTTGCGCGCTCATTC 60.660 50.000 33.29 22.79 0.00 2.67
2165 2392 1.082169 GTTGTTGCGCGCTCATTCA 60.082 52.632 33.29 19.32 0.00 2.57
2166 2393 1.061799 GTTGTTGCGCGCTCATTCAG 61.062 55.000 33.29 0.00 0.00 3.02
2167 2394 2.099062 GTTGCGCGCTCATTCAGG 59.901 61.111 33.29 0.00 0.00 3.86
2168 2395 3.126879 TTGCGCGCTCATTCAGGG 61.127 61.111 33.29 0.00 38.14 4.45
2169 2396 3.899981 TTGCGCGCTCATTCAGGGT 62.900 57.895 33.29 0.00 37.39 4.34
2170 2397 3.127533 GCGCGCTCATTCAGGGTT 61.128 61.111 26.67 0.00 37.39 4.11
2171 2398 3.093278 CGCGCTCATTCAGGGTTC 58.907 61.111 5.56 0.00 37.39 3.62
2172 2399 2.464459 CGCGCTCATTCAGGGTTCC 61.464 63.158 5.56 0.00 37.39 3.62
2173 2400 2.115291 GCGCTCATTCAGGGTTCCC 61.115 63.158 0.00 0.00 37.39 3.97
2174 2401 1.815421 CGCTCATTCAGGGTTCCCG 60.815 63.158 1.91 0.00 0.00 5.14
2175 2402 1.452108 GCTCATTCAGGGTTCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
2176 2403 1.452108 CTCATTCAGGGTTCCCGGC 60.452 63.158 0.00 0.00 0.00 6.13
2177 2404 2.824041 CATTCAGGGTTCCCGGCG 60.824 66.667 0.00 0.00 0.00 6.46
2178 2405 4.796495 ATTCAGGGTTCCCGGCGC 62.796 66.667 0.00 0.00 0.00 6.53
2185 2412 4.856607 GTTCCCGGCGCTCGAGAG 62.857 72.222 18.75 15.34 42.43 3.20
2191 2418 4.863925 GGCGCTCGAGAGGCTGAC 62.864 72.222 30.68 8.64 37.43 3.51
2192 2419 4.863925 GCGCTCGAGAGGCTGACC 62.864 72.222 18.75 0.00 0.00 4.02
2193 2420 4.200283 CGCTCGAGAGGCTGACCC 62.200 72.222 18.75 0.00 36.11 4.46
2203 2430 4.803426 GCTGACCCTCTCCGCGTG 62.803 72.222 4.92 0.00 0.00 5.34
2204 2431 4.803426 CTGACCCTCTCCGCGTGC 62.803 72.222 4.92 0.00 0.00 5.34
2206 2433 3.138798 GACCCTCTCCGCGTGCTA 61.139 66.667 4.92 0.00 0.00 3.49
2207 2434 3.412879 GACCCTCTCCGCGTGCTAC 62.413 68.421 4.92 0.00 0.00 3.58
2208 2435 4.208686 CCCTCTCCGCGTGCTACC 62.209 72.222 4.92 0.00 0.00 3.18
2209 2436 3.141488 CCTCTCCGCGTGCTACCT 61.141 66.667 4.92 0.00 0.00 3.08
2210 2437 2.409651 CTCTCCGCGTGCTACCTC 59.590 66.667 4.92 0.00 0.00 3.85
2211 2438 3.456431 CTCTCCGCGTGCTACCTCG 62.456 68.421 4.92 0.00 0.00 4.63
2212 2439 3.506096 CTCCGCGTGCTACCTCGA 61.506 66.667 4.92 0.00 0.00 4.04
2213 2440 3.736482 CTCCGCGTGCTACCTCGAC 62.736 68.421 4.92 0.00 0.00 4.20
2214 2441 4.849329 CCGCGTGCTACCTCGACC 62.849 72.222 4.92 0.00 0.00 4.79
2215 2442 3.812019 CGCGTGCTACCTCGACCT 61.812 66.667 0.00 0.00 0.00 3.85
2216 2443 2.202623 GCGTGCTACCTCGACCTG 60.203 66.667 0.00 0.00 0.00 4.00
2217 2444 2.490217 CGTGCTACCTCGACCTGG 59.510 66.667 0.00 0.00 0.00 4.45
2218 2445 2.893398 GTGCTACCTCGACCTGGG 59.107 66.667 0.00 0.00 0.00 4.45
2219 2446 3.075005 TGCTACCTCGACCTGGGC 61.075 66.667 0.00 0.00 0.00 5.36
2220 2447 2.760385 GCTACCTCGACCTGGGCT 60.760 66.667 0.00 0.00 0.00 5.19
2221 2448 2.359967 GCTACCTCGACCTGGGCTT 61.360 63.158 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
324 349 8.356657 AGTCGGATTTATTTTGTTTCATGACAA 58.643 29.630 0.00 0.00 37.73 3.18
1201 1425 3.181465 ACTTATCTCGGACGCATCCATTT 60.181 43.478 0.00 0.00 46.67 2.32
1258 1483 8.441311 AATTAGAGTGCATCCATCCTATTAGA 57.559 34.615 0.00 0.00 0.00 2.10
1333 1559 4.879545 GGAAAATATGAAACTCCACGCCTA 59.120 41.667 0.00 0.00 0.00 3.93
1423 1649 7.012044 CCCACTAAAATCAATCTAACGGTTAGG 59.988 40.741 23.69 11.06 34.00 2.69
1546 1773 7.072263 ACAGGAAGAGGTTGAGATTATATGG 57.928 40.000 0.00 0.00 0.00 2.74
1547 1774 8.865090 AGTACAGGAAGAGGTTGAGATTATATG 58.135 37.037 0.00 0.00 0.00 1.78
1548 1775 9.440761 AAGTACAGGAAGAGGTTGAGATTATAT 57.559 33.333 0.00 0.00 0.00 0.86
1549 1776 8.840200 AAGTACAGGAAGAGGTTGAGATTATA 57.160 34.615 0.00 0.00 0.00 0.98
1550 1777 7.621683 AGAAGTACAGGAAGAGGTTGAGATTAT 59.378 37.037 0.00 0.00 0.00 1.28
1551 1778 6.954684 AGAAGTACAGGAAGAGGTTGAGATTA 59.045 38.462 0.00 0.00 0.00 1.75
1552 1779 5.782845 AGAAGTACAGGAAGAGGTTGAGATT 59.217 40.000 0.00 0.00 0.00 2.40
1553 1780 5.186797 CAGAAGTACAGGAAGAGGTTGAGAT 59.813 44.000 0.00 0.00 0.00 2.75
1554 1781 4.524714 CAGAAGTACAGGAAGAGGTTGAGA 59.475 45.833 0.00 0.00 0.00 3.27
1555 1782 4.282195 ACAGAAGTACAGGAAGAGGTTGAG 59.718 45.833 0.00 0.00 0.00 3.02
1556 1783 4.223953 ACAGAAGTACAGGAAGAGGTTGA 58.776 43.478 0.00 0.00 0.00 3.18
1557 1784 4.608948 ACAGAAGTACAGGAAGAGGTTG 57.391 45.455 0.00 0.00 0.00 3.77
1558 1785 5.632034 AAACAGAAGTACAGGAAGAGGTT 57.368 39.130 0.00 0.00 0.00 3.50
1559 1786 6.742559 TTAAACAGAAGTACAGGAAGAGGT 57.257 37.500 0.00 0.00 0.00 3.85
1560 1787 7.217906 AGTTTAAACAGAAGTACAGGAAGAGG 58.782 38.462 20.06 0.00 0.00 3.69
1561 1788 7.385478 GGAGTTTAAACAGAAGTACAGGAAGAG 59.615 40.741 20.06 0.00 0.00 2.85
1562 1789 7.070821 AGGAGTTTAAACAGAAGTACAGGAAGA 59.929 37.037 20.06 0.00 0.00 2.87
1563 1790 7.217906 AGGAGTTTAAACAGAAGTACAGGAAG 58.782 38.462 20.06 0.00 0.00 3.46
1564 1791 7.133133 AGGAGTTTAAACAGAAGTACAGGAA 57.867 36.000 20.06 0.00 0.00 3.36
1565 1792 6.742559 AGGAGTTTAAACAGAAGTACAGGA 57.257 37.500 20.06 0.00 0.00 3.86
1566 1793 7.803279 AAAGGAGTTTAAACAGAAGTACAGG 57.197 36.000 20.06 0.00 0.00 4.00
1567 1794 9.717892 GAAAAAGGAGTTTAAACAGAAGTACAG 57.282 33.333 20.06 0.00 0.00 2.74
1568 1795 9.457436 AGAAAAAGGAGTTTAAACAGAAGTACA 57.543 29.630 20.06 0.00 0.00 2.90
1569 1796 9.932699 GAGAAAAAGGAGTTTAAACAGAAGTAC 57.067 33.333 20.06 0.00 0.00 2.73
1570 1797 9.901172 AGAGAAAAAGGAGTTTAAACAGAAGTA 57.099 29.630 20.06 0.00 0.00 2.24
1571 1798 8.809468 AGAGAAAAAGGAGTTTAAACAGAAGT 57.191 30.769 20.06 0.00 0.00 3.01
1572 1799 9.508567 CAAGAGAAAAAGGAGTTTAAACAGAAG 57.491 33.333 20.06 0.00 0.00 2.85
1573 1800 9.020731 ACAAGAGAAAAAGGAGTTTAAACAGAA 57.979 29.630 20.06 0.00 0.00 3.02
1574 1801 8.575649 ACAAGAGAAAAAGGAGTTTAAACAGA 57.424 30.769 20.06 0.00 0.00 3.41
1578 1805 9.777575 CGTTTACAAGAGAAAAAGGAGTTTAAA 57.222 29.630 0.00 0.00 0.00 1.52
1579 1806 9.165035 TCGTTTACAAGAGAAAAAGGAGTTTAA 57.835 29.630 0.00 0.00 0.00 1.52
1580 1807 8.721019 TCGTTTACAAGAGAAAAAGGAGTTTA 57.279 30.769 0.00 0.00 0.00 2.01
1581 1808 7.619964 TCGTTTACAAGAGAAAAAGGAGTTT 57.380 32.000 0.00 0.00 0.00 2.66
1582 1809 7.497909 TGATCGTTTACAAGAGAAAAAGGAGTT 59.502 33.333 0.00 0.00 32.48 3.01
1583 1810 6.990349 TGATCGTTTACAAGAGAAAAAGGAGT 59.010 34.615 0.00 0.00 32.48 3.85
1584 1811 7.385205 TCTGATCGTTTACAAGAGAAAAAGGAG 59.615 37.037 0.00 0.00 32.48 3.69
1585 1812 7.214381 TCTGATCGTTTACAAGAGAAAAAGGA 58.786 34.615 0.00 0.00 33.21 3.36
1586 1813 7.421530 TCTGATCGTTTACAAGAGAAAAAGG 57.578 36.000 0.00 0.00 0.00 3.11
1587 1814 8.712363 TGATCTGATCGTTTACAAGAGAAAAAG 58.288 33.333 12.65 0.00 0.00 2.27
1588 1815 8.601845 TGATCTGATCGTTTACAAGAGAAAAA 57.398 30.769 12.65 0.00 0.00 1.94
1589 1816 8.088365 TCTGATCTGATCGTTTACAAGAGAAAA 58.912 33.333 12.65 0.00 0.00 2.29
1590 1817 7.602753 TCTGATCTGATCGTTTACAAGAGAAA 58.397 34.615 12.65 0.00 0.00 2.52
1591 1818 7.158099 TCTGATCTGATCGTTTACAAGAGAA 57.842 36.000 12.65 0.00 0.00 2.87
1592 1819 6.759497 TCTGATCTGATCGTTTACAAGAGA 57.241 37.500 12.65 4.22 0.00 3.10
1593 1820 6.475076 CCTTCTGATCTGATCGTTTACAAGAG 59.525 42.308 12.65 2.03 0.00 2.85
1594 1821 6.071334 ACCTTCTGATCTGATCGTTTACAAGA 60.071 38.462 12.65 5.52 0.00 3.02
1595 1822 6.102663 ACCTTCTGATCTGATCGTTTACAAG 58.897 40.000 12.65 3.34 0.00 3.16
1596 1823 6.037786 ACCTTCTGATCTGATCGTTTACAA 57.962 37.500 12.65 0.00 0.00 2.41
1597 1824 5.651530 GACCTTCTGATCTGATCGTTTACA 58.348 41.667 12.65 0.00 0.00 2.41
1598 1825 4.735822 CGACCTTCTGATCTGATCGTTTAC 59.264 45.833 12.65 1.38 0.00 2.01
1599 1826 4.638865 TCGACCTTCTGATCTGATCGTTTA 59.361 41.667 17.93 3.31 0.00 2.01
1600 1827 3.444034 TCGACCTTCTGATCTGATCGTTT 59.556 43.478 17.93 0.00 0.00 3.60
1601 1828 3.017442 TCGACCTTCTGATCTGATCGTT 58.983 45.455 17.93 0.51 0.00 3.85
1602 1829 2.644676 TCGACCTTCTGATCTGATCGT 58.355 47.619 17.93 11.07 0.00 3.73
1603 1830 3.913548 ATCGACCTTCTGATCTGATCG 57.086 47.619 12.65 14.44 0.00 3.69
1604 1831 4.942852 ACAATCGACCTTCTGATCTGATC 58.057 43.478 10.72 10.72 0.00 2.92
1605 1832 5.350504 AACAATCGACCTTCTGATCTGAT 57.649 39.130 2.84 0.00 0.00 2.90
1606 1833 4.382040 GGAACAATCGACCTTCTGATCTGA 60.382 45.833 0.00 0.00 0.00 3.27
1607 1834 3.868077 GGAACAATCGACCTTCTGATCTG 59.132 47.826 0.00 0.00 0.00 2.90
1608 1835 3.772025 AGGAACAATCGACCTTCTGATCT 59.228 43.478 0.00 0.00 0.00 2.75
1609 1836 4.130286 AGGAACAATCGACCTTCTGATC 57.870 45.455 0.00 0.00 0.00 2.92
1610 1837 4.256920 CAAGGAACAATCGACCTTCTGAT 58.743 43.478 1.45 0.00 41.33 2.90
1611 1838 3.664107 CAAGGAACAATCGACCTTCTGA 58.336 45.455 1.45 0.00 41.33 3.27
1612 1839 2.160417 GCAAGGAACAATCGACCTTCTG 59.840 50.000 1.45 0.00 41.33 3.02
1613 1840 2.039084 AGCAAGGAACAATCGACCTTCT 59.961 45.455 1.45 1.08 41.33 2.85
1614 1841 2.427506 AGCAAGGAACAATCGACCTTC 58.572 47.619 1.45 0.00 41.33 3.46
1615 1842 2.554032 CAAGCAAGGAACAATCGACCTT 59.446 45.455 0.00 0.00 43.63 3.50
1616 1843 2.154462 CAAGCAAGGAACAATCGACCT 58.846 47.619 0.00 0.00 35.36 3.85
1617 1844 1.880027 ACAAGCAAGGAACAATCGACC 59.120 47.619 0.00 0.00 0.00 4.79
1618 1845 3.423123 CGTACAAGCAAGGAACAATCGAC 60.423 47.826 0.00 0.00 0.00 4.20
1619 1846 2.734606 CGTACAAGCAAGGAACAATCGA 59.265 45.455 0.00 0.00 0.00 3.59
1620 1847 2.724839 GCGTACAAGCAAGGAACAATCG 60.725 50.000 0.00 0.00 37.05 3.34
1621 1848 2.414161 GGCGTACAAGCAAGGAACAATC 60.414 50.000 0.00 0.00 39.27 2.67
1622 1849 1.539827 GGCGTACAAGCAAGGAACAAT 59.460 47.619 0.00 0.00 39.27 2.71
1623 1850 0.948678 GGCGTACAAGCAAGGAACAA 59.051 50.000 0.00 0.00 39.27 2.83
1624 1851 0.179043 TGGCGTACAAGCAAGGAACA 60.179 50.000 0.00 0.00 39.27 3.18
1625 1852 0.237498 GTGGCGTACAAGCAAGGAAC 59.763 55.000 0.00 0.00 39.27 3.62
1626 1853 1.225376 CGTGGCGTACAAGCAAGGAA 61.225 55.000 0.00 0.00 39.27 3.36
1627 1854 1.666553 CGTGGCGTACAAGCAAGGA 60.667 57.895 0.00 0.00 39.27 3.36
1628 1855 1.666553 TCGTGGCGTACAAGCAAGG 60.667 57.895 0.00 0.00 39.27 3.61
1629 1856 1.491563 GTCGTGGCGTACAAGCAAG 59.508 57.895 0.00 0.00 39.27 4.01
1630 1857 2.304401 CGTCGTGGCGTACAAGCAA 61.304 57.895 0.00 0.00 39.27 3.91
1631 1858 2.731721 CGTCGTGGCGTACAAGCA 60.732 61.111 0.00 0.00 39.27 3.91
1632 1859 2.429571 TCGTCGTGGCGTACAAGC 60.430 61.111 0.00 0.00 0.00 4.01
1633 1860 1.800315 CCTCGTCGTGGCGTACAAG 60.800 63.158 0.00 0.00 0.00 3.16
1634 1861 2.256158 CCTCGTCGTGGCGTACAA 59.744 61.111 0.00 0.00 0.00 2.41
1635 1862 3.740397 CCCTCGTCGTGGCGTACA 61.740 66.667 7.84 0.00 0.00 2.90
1641 1868 1.519455 GAAGATGCCCTCGTCGTGG 60.519 63.158 6.36 6.36 33.49 4.94
1642 1869 0.526524 GAGAAGATGCCCTCGTCGTG 60.527 60.000 0.00 0.00 37.44 4.35
1643 1870 1.810532 GAGAAGATGCCCTCGTCGT 59.189 57.895 0.00 0.00 37.44 4.34
1644 1871 1.298713 CGAGAAGATGCCCTCGTCG 60.299 63.158 0.00 0.00 44.99 5.12
1645 1872 4.719997 CGAGAAGATGCCCTCGTC 57.280 61.111 0.00 0.00 44.99 4.20
1648 1875 1.443828 GGGACGAGAAGATGCCCTC 59.556 63.158 0.00 0.00 35.86 4.30
1649 1876 2.066999 GGGGACGAGAAGATGCCCT 61.067 63.158 0.00 0.00 43.04 5.19
1650 1877 1.910580 TTGGGGACGAGAAGATGCCC 61.911 60.000 0.00 0.00 46.46 5.36
1651 1878 0.181350 ATTGGGGACGAGAAGATGCC 59.819 55.000 0.00 0.00 0.00 4.40
1652 1879 2.910688 TATTGGGGACGAGAAGATGC 57.089 50.000 0.00 0.00 0.00 3.91
1653 1880 7.170393 TGTATATATTGGGGACGAGAAGATG 57.830 40.000 0.00 0.00 0.00 2.90
1654 1881 7.979786 ATGTATATATTGGGGACGAGAAGAT 57.020 36.000 0.00 0.00 0.00 2.40
1655 1882 7.341256 GGTATGTATATATTGGGGACGAGAAGA 59.659 40.741 0.00 0.00 0.00 2.87
1656 1883 7.123697 TGGTATGTATATATTGGGGACGAGAAG 59.876 40.741 0.00 0.00 0.00 2.85
1657 1884 6.955267 TGGTATGTATATATTGGGGACGAGAA 59.045 38.462 0.00 0.00 0.00 2.87
1658 1885 6.495847 TGGTATGTATATATTGGGGACGAGA 58.504 40.000 0.00 0.00 0.00 4.04
1659 1886 6.785337 TGGTATGTATATATTGGGGACGAG 57.215 41.667 0.00 0.00 0.00 4.18
1660 1887 6.670464 ACATGGTATGTATATATTGGGGACGA 59.330 38.462 0.00 0.00 42.78 4.20
1661 1888 6.761242 CACATGGTATGTATATATTGGGGACG 59.239 42.308 0.00 0.00 42.70 4.79
1662 1889 7.054124 CCACATGGTATGTATATATTGGGGAC 58.946 42.308 0.00 0.00 42.70 4.46
1663 1890 6.353516 GCCACATGGTATGTATATATTGGGGA 60.354 42.308 4.76 0.00 42.70 4.81
1664 1891 5.827797 GCCACATGGTATGTATATATTGGGG 59.172 44.000 0.00 0.00 42.70 4.96
1665 1892 6.662755 AGCCACATGGTATGTATATATTGGG 58.337 40.000 0.00 0.00 42.70 4.12
1666 1893 7.568349 AGAGCCACATGGTATGTATATATTGG 58.432 38.462 0.00 0.00 42.70 3.16
1667 1894 8.481314 AGAGAGCCACATGGTATGTATATATTG 58.519 37.037 0.00 0.00 42.70 1.90
1668 1895 8.615360 AGAGAGCCACATGGTATGTATATATT 57.385 34.615 0.00 0.00 42.70 1.28
1669 1896 7.013750 CGAGAGAGCCACATGGTATGTATATAT 59.986 40.741 0.00 0.00 42.70 0.86
1670 1897 6.318900 CGAGAGAGCCACATGGTATGTATATA 59.681 42.308 0.00 0.00 42.70 0.86
1671 1898 5.126222 CGAGAGAGCCACATGGTATGTATAT 59.874 44.000 0.00 0.00 42.70 0.86
1672 1899 4.459337 CGAGAGAGCCACATGGTATGTATA 59.541 45.833 0.00 0.00 42.70 1.47
1673 1900 3.256879 CGAGAGAGCCACATGGTATGTAT 59.743 47.826 0.00 0.00 42.70 2.29
1674 1901 2.623416 CGAGAGAGCCACATGGTATGTA 59.377 50.000 0.00 0.00 42.70 2.29
1675 1902 1.410517 CGAGAGAGCCACATGGTATGT 59.589 52.381 0.00 0.00 46.22 2.29
1676 1903 1.683385 TCGAGAGAGCCACATGGTATG 59.317 52.381 0.00 0.00 33.95 2.39
1677 1904 2.073252 TCGAGAGAGCCACATGGTAT 57.927 50.000 0.00 0.00 33.95 2.73
1678 1905 3.588742 TCGAGAGAGCCACATGGTA 57.411 52.632 0.00 0.00 33.95 3.25
1679 1906 4.442038 TCGAGAGAGCCACATGGT 57.558 55.556 0.00 0.00 33.95 3.55
1689 1916 1.554160 ACGTTCCTACTCCTCGAGAGA 59.446 52.381 15.71 8.70 46.50 3.10
1690 1917 6.209642 GGAAACGTTCCTACTCCTCGAGAG 62.210 54.167 15.71 11.86 46.57 3.20
1691 1918 2.486472 AACGTTCCTACTCCTCGAGA 57.514 50.000 15.71 0.00 33.32 4.04
1692 1919 2.159407 GGAAACGTTCCTACTCCTCGAG 60.159 54.545 5.13 5.13 46.57 4.04
1693 1920 1.815003 GGAAACGTTCCTACTCCTCGA 59.185 52.381 0.00 0.00 46.57 4.04
1694 1921 2.274920 GGAAACGTTCCTACTCCTCG 57.725 55.000 0.00 0.00 46.57 4.63
1709 1936 5.104900 GCTCTGGTCTCTATTAGGTTGGAAA 60.105 44.000 0.00 0.00 0.00 3.13
1710 1937 4.406003 GCTCTGGTCTCTATTAGGTTGGAA 59.594 45.833 0.00 0.00 0.00 3.53
1711 1938 3.961408 GCTCTGGTCTCTATTAGGTTGGA 59.039 47.826 0.00 0.00 0.00 3.53
1712 1939 3.243569 CGCTCTGGTCTCTATTAGGTTGG 60.244 52.174 0.00 0.00 0.00 3.77
1713 1940 3.243569 CCGCTCTGGTCTCTATTAGGTTG 60.244 52.174 0.00 0.00 0.00 3.77
1714 1941 2.959707 CCGCTCTGGTCTCTATTAGGTT 59.040 50.000 0.00 0.00 0.00 3.50
1715 1942 2.588620 CCGCTCTGGTCTCTATTAGGT 58.411 52.381 0.00 0.00 0.00 3.08
1716 1943 1.271102 GCCGCTCTGGTCTCTATTAGG 59.729 57.143 0.00 0.00 41.21 2.69
1717 1944 1.068885 CGCCGCTCTGGTCTCTATTAG 60.069 57.143 0.00 0.00 41.21 1.73
1718 1945 0.952280 CGCCGCTCTGGTCTCTATTA 59.048 55.000 0.00 0.00 41.21 0.98
1719 1946 0.752009 TCGCCGCTCTGGTCTCTATT 60.752 55.000 0.00 0.00 41.21 1.73
1720 1947 1.152943 TCGCCGCTCTGGTCTCTAT 60.153 57.895 0.00 0.00 41.21 1.98
1721 1948 2.113433 GTCGCCGCTCTGGTCTCTA 61.113 63.158 0.00 0.00 41.21 2.43
1722 1949 3.444805 GTCGCCGCTCTGGTCTCT 61.445 66.667 0.00 0.00 41.21 3.10
1723 1950 4.500116 GGTCGCCGCTCTGGTCTC 62.500 72.222 0.00 0.00 41.21 3.36
1734 1961 4.521062 AGAGCTGATGCGGTCGCC 62.521 66.667 12.94 0.00 45.42 5.54
1735 1962 2.959071 GAGAGCTGATGCGGTCGC 60.959 66.667 8.54 8.54 45.42 5.19
1736 1963 1.299014 GAGAGAGCTGATGCGGTCG 60.299 63.158 0.00 0.00 45.42 4.79
1737 1964 1.067250 GGAGAGAGCTGATGCGGTC 59.933 63.158 0.00 0.00 45.42 4.79
1738 1965 2.430610 GGGAGAGAGCTGATGCGGT 61.431 63.158 0.00 0.00 45.42 5.68
1739 1966 2.420890 GGGAGAGAGCTGATGCGG 59.579 66.667 0.00 0.00 45.42 5.69
1740 1967 2.027314 CGGGAGAGAGCTGATGCG 59.973 66.667 0.00 0.00 45.42 4.73
1741 1968 2.130426 TCCGGGAGAGAGCTGATGC 61.130 63.158 0.00 0.00 40.05 3.91
1742 1969 1.739049 GTCCGGGAGAGAGCTGATG 59.261 63.158 0.00 0.00 0.00 3.07
1743 1970 1.826054 CGTCCGGGAGAGAGCTGAT 60.826 63.158 0.00 0.00 0.00 2.90
1744 1971 2.438614 CGTCCGGGAGAGAGCTGA 60.439 66.667 0.00 0.00 0.00 4.26
1745 1972 3.522731 CCGTCCGGGAGAGAGCTG 61.523 72.222 0.00 0.00 38.47 4.24
1746 1973 3.999297 GACCGTCCGGGAGAGAGCT 62.999 68.421 10.91 0.00 39.97 4.09
1747 1974 3.519930 GACCGTCCGGGAGAGAGC 61.520 72.222 10.91 0.00 39.97 4.09
1748 1975 2.115911 CAGACCGTCCGGGAGAGAG 61.116 68.421 10.91 0.00 39.97 3.20
1749 1976 2.045242 CAGACCGTCCGGGAGAGA 60.045 66.667 10.91 0.00 39.97 3.10
1750 1977 3.827898 GCAGACCGTCCGGGAGAG 61.828 72.222 10.91 0.00 39.97 3.20
1751 1978 4.361971 AGCAGACCGTCCGGGAGA 62.362 66.667 10.91 0.00 39.97 3.71
1752 1979 3.827898 GAGCAGACCGTCCGGGAG 61.828 72.222 10.91 0.00 39.97 4.30
1755 1982 4.436998 GTGGAGCAGACCGTCCGG 62.437 72.222 3.76 3.76 42.03 5.14
1756 1983 4.436998 GGTGGAGCAGACCGTCCG 62.437 72.222 0.00 0.00 35.37 4.79
1757 1984 3.302347 CTGGTGGAGCAGACCGTCC 62.302 68.421 0.00 0.00 36.12 4.79
1758 1985 2.262915 CTGGTGGAGCAGACCGTC 59.737 66.667 0.00 0.00 36.12 4.79
1759 1986 3.314331 CCTGGTGGAGCAGACCGT 61.314 66.667 7.42 0.00 36.12 4.83
1760 1987 3.302347 GACCTGGTGGAGCAGACCG 62.302 68.421 2.82 0.00 36.12 4.79
1761 1988 2.665603 GACCTGGTGGAGCAGACC 59.334 66.667 2.82 0.00 37.04 3.85
1762 1989 1.484444 AAGGACCTGGTGGAGCAGAC 61.484 60.000 2.82 1.78 37.04 3.51
1763 1990 1.152030 AAGGACCTGGTGGAGCAGA 60.152 57.895 2.82 0.00 37.04 4.26
1764 1991 1.197430 AGAAGGACCTGGTGGAGCAG 61.197 60.000 2.82 0.00 37.04 4.24
1765 1992 1.152030 AGAAGGACCTGGTGGAGCA 60.152 57.895 2.82 0.00 37.04 4.26
1766 1993 1.599576 GAGAAGGACCTGGTGGAGC 59.400 63.158 2.82 0.00 37.04 4.70
1767 1994 1.608717 CGGAGAAGGACCTGGTGGAG 61.609 65.000 2.82 0.00 37.04 3.86
1768 1995 1.609501 CGGAGAAGGACCTGGTGGA 60.610 63.158 2.82 0.00 37.04 4.02
1769 1996 2.660064 CCGGAGAAGGACCTGGTGG 61.660 68.421 2.82 0.00 39.83 4.61
1770 1997 2.982130 CCGGAGAAGGACCTGGTG 59.018 66.667 2.82 0.00 0.00 4.17
1771 1998 3.003763 GCCGGAGAAGGACCTGGT 61.004 66.667 5.05 0.00 0.00 4.00
1772 1999 2.685380 AGCCGGAGAAGGACCTGG 60.685 66.667 5.05 0.00 0.00 4.45
1773 2000 2.726351 GGAGCCGGAGAAGGACCTG 61.726 68.421 5.05 0.00 0.00 4.00
1774 2001 2.364448 GGAGCCGGAGAAGGACCT 60.364 66.667 5.05 0.00 0.00 3.85
1775 2002 3.839432 CGGAGCCGGAGAAGGACC 61.839 72.222 5.05 0.00 35.56 4.46
1835 2062 3.503363 GAGCAGACATGGCGCCAC 61.503 66.667 35.50 20.38 36.08 5.01
1841 2068 3.746949 GAGGCCGGAGCAGACATGG 62.747 68.421 5.05 0.00 42.56 3.66
1842 2069 2.202987 GAGGCCGGAGCAGACATG 60.203 66.667 5.05 0.00 42.56 3.21
1843 2070 3.474570 GGAGGCCGGAGCAGACAT 61.475 66.667 5.05 0.00 42.56 3.06
1863 2090 2.257676 GAGGGTGACGTCGACCAC 59.742 66.667 27.25 19.33 35.25 4.16
1869 2096 4.240049 GTCGTTGAGGGTGACGTC 57.760 61.111 9.11 9.11 45.35 4.34
1872 2099 1.372623 GGACGTCGTTGAGGGTGAC 60.373 63.158 9.92 0.00 0.00 3.67
1873 2100 2.567497 GGGACGTCGTTGAGGGTGA 61.567 63.158 9.92 0.00 0.00 4.02
1874 2101 2.048503 GGGACGTCGTTGAGGGTG 60.049 66.667 9.92 0.00 0.00 4.61
1890 2117 4.521062 CTCAAGGGAGCCGAGCGG 62.521 72.222 4.20 4.20 33.67 5.52
1891 2118 4.521062 CCTCAAGGGAGCCGAGCG 62.521 72.222 0.00 0.00 39.96 5.03
1892 2119 4.847444 GCCTCAAGGGAGCCGAGC 62.847 72.222 0.00 0.00 39.96 5.03
1893 2120 4.168291 GGCCTCAAGGGAGCCGAG 62.168 72.222 0.00 0.00 39.96 4.63
1897 2124 4.847444 GAGCGGCCTCAAGGGAGC 62.847 72.222 0.00 0.00 39.96 4.70
1898 2125 3.080121 AGAGCGGCCTCAAGGGAG 61.080 66.667 0.00 0.00 40.68 4.30
1899 2126 3.077556 GAGAGCGGCCTCAAGGGA 61.078 66.667 0.00 0.00 40.68 4.20
1900 2127 4.168291 GGAGAGCGGCCTCAAGGG 62.168 72.222 16.64 0.00 40.68 3.95
1901 2128 4.521062 CGGAGAGCGGCCTCAAGG 62.521 72.222 16.64 0.00 40.68 3.61
1937 2164 4.148825 ATGTCGAGGAGGCGCACC 62.149 66.667 10.83 12.61 0.00 5.01
1938 2165 2.583593 GATGTCGAGGAGGCGCAC 60.584 66.667 10.83 1.82 0.00 5.34
1939 2166 3.838271 GGATGTCGAGGAGGCGCA 61.838 66.667 10.83 0.00 0.00 6.09
1940 2167 4.933064 CGGATGTCGAGGAGGCGC 62.933 72.222 0.00 0.00 42.43 6.53
1941 2168 3.518998 ACGGATGTCGAGGAGGCG 61.519 66.667 0.00 0.00 42.43 5.52
1942 2169 2.105128 CACGGATGTCGAGGAGGC 59.895 66.667 0.00 0.00 42.43 4.70
1943 2170 1.433879 GACACGGATGTCGAGGAGG 59.566 63.158 0.00 0.00 45.66 4.30
1962 2189 4.479993 CCTGCTGCCCTCTTCCGG 62.480 72.222 0.00 0.00 0.00 5.14
1964 2191 3.726144 AGCCTGCTGCCCTCTTCC 61.726 66.667 0.00 0.00 42.71 3.46
1965 2192 2.438075 CAGCCTGCTGCCCTCTTC 60.438 66.667 6.16 0.00 42.71 2.87
1983 2210 4.899239 GGAGATGCTGTCGGCGGG 62.899 72.222 7.21 0.00 45.43 6.13
1984 2211 4.147449 TGGAGATGCTGTCGGCGG 62.147 66.667 7.21 0.00 45.43 6.13
1985 2212 2.887568 GTGGAGATGCTGTCGGCG 60.888 66.667 0.00 0.00 45.43 6.46
1986 2213 2.887568 CGTGGAGATGCTGTCGGC 60.888 66.667 0.00 0.00 42.22 5.54
1987 2214 2.202797 CCGTGGAGATGCTGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
1988 2215 1.078759 GAACCGTGGAGATGCTGTCG 61.079 60.000 0.00 0.00 0.00 4.35
1989 2216 0.247736 AGAACCGTGGAGATGCTGTC 59.752 55.000 0.00 0.00 0.00 3.51
1990 2217 0.247736 GAGAACCGTGGAGATGCTGT 59.752 55.000 0.00 0.00 0.00 4.40
1991 2218 0.460987 GGAGAACCGTGGAGATGCTG 60.461 60.000 0.00 0.00 0.00 4.41
1992 2219 1.901085 GGAGAACCGTGGAGATGCT 59.099 57.895 0.00 0.00 0.00 3.79
1993 2220 4.522971 GGAGAACCGTGGAGATGC 57.477 61.111 0.00 0.00 0.00 3.91
2040 2267 2.125912 CGTGAGGGTGAAGCGGAG 60.126 66.667 0.00 0.00 0.00 4.63
2041 2268 4.373116 GCGTGAGGGTGAAGCGGA 62.373 66.667 0.00 0.00 0.00 5.54
2044 2271 3.291101 TACCGCGTGAGGGTGAAGC 62.291 63.158 4.92 0.00 43.37 3.86
2045 2272 1.445582 GTACCGCGTGAGGGTGAAG 60.446 63.158 4.92 0.00 43.37 3.02
2046 2273 2.652530 GTACCGCGTGAGGGTGAA 59.347 61.111 4.92 0.00 43.37 3.18
2047 2274 3.740397 CGTACCGCGTGAGGGTGA 61.740 66.667 4.92 0.00 43.37 4.02
2057 2284 2.126189 GTCCAGTCCACGTACCGC 60.126 66.667 0.00 0.00 0.00 5.68
2058 2285 2.177531 CGTCCAGTCCACGTACCG 59.822 66.667 0.00 0.00 32.41 4.02
2059 2286 2.126189 GCGTCCAGTCCACGTACC 60.126 66.667 0.00 0.00 39.54 3.34
2060 2287 2.503375 CGCGTCCAGTCCACGTAC 60.503 66.667 0.00 0.00 39.54 3.67
2061 2288 4.409218 GCGCGTCCAGTCCACGTA 62.409 66.667 8.43 0.00 39.54 3.57
2067 2294 3.845259 TATGGGGCGCGTCCAGTC 61.845 66.667 33.48 15.38 37.75 3.51
2068 2295 4.157120 GTATGGGGCGCGTCCAGT 62.157 66.667 33.48 21.42 37.75 4.00
2069 2296 4.155733 TGTATGGGGCGCGTCCAG 62.156 66.667 33.48 0.00 37.75 3.86
2070 2297 4.155733 CTGTATGGGGCGCGTCCA 62.156 66.667 33.48 26.74 38.82 4.02
2072 2299 4.530857 AGCTGTATGGGGCGCGTC 62.531 66.667 8.43 4.38 0.00 5.19
2073 2300 4.838152 CAGCTGTATGGGGCGCGT 62.838 66.667 8.43 0.74 0.00 6.01
2076 2303 3.704231 AAGGCAGCTGTATGGGGCG 62.704 63.158 16.64 0.00 0.00 6.13
2077 2304 2.123428 CAAGGCAGCTGTATGGGGC 61.123 63.158 16.64 0.00 0.00 5.80
2078 2305 2.123428 GCAAGGCAGCTGTATGGGG 61.123 63.158 16.64 1.85 0.00 4.96
2079 2306 2.123428 GGCAAGGCAGCTGTATGGG 61.123 63.158 16.64 2.95 34.17 4.00
2080 2307 0.682209 AAGGCAAGGCAGCTGTATGG 60.682 55.000 16.64 2.82 34.17 2.74
2081 2308 0.737219 GAAGGCAAGGCAGCTGTATG 59.263 55.000 16.64 12.75 34.17 2.39
2082 2309 0.329261 TGAAGGCAAGGCAGCTGTAT 59.671 50.000 16.64 0.67 34.17 2.29
2083 2310 0.606401 GTGAAGGCAAGGCAGCTGTA 60.606 55.000 16.64 0.00 34.17 2.74
2084 2311 1.900498 GTGAAGGCAAGGCAGCTGT 60.900 57.895 16.64 0.00 34.17 4.40
2085 2312 2.633509 GGTGAAGGCAAGGCAGCTG 61.634 63.158 10.11 10.11 34.17 4.24
2086 2313 2.282745 GGTGAAGGCAAGGCAGCT 60.283 61.111 0.00 0.00 34.17 4.24
2087 2314 3.741476 CGGTGAAGGCAAGGCAGC 61.741 66.667 0.00 0.00 0.00 5.25
2088 2315 3.741476 GCGGTGAAGGCAAGGCAG 61.741 66.667 0.00 0.00 0.00 4.85
2130 2357 4.643385 CAACACGTGCGGCGACAC 62.643 66.667 17.22 17.37 44.77 3.67
2132 2359 3.932313 AACAACACGTGCGGCGAC 61.932 61.111 17.22 5.14 44.77 5.19
2133 2360 3.931130 CAACAACACGTGCGGCGA 61.931 61.111 17.22 0.00 44.77 5.54
2135 2362 2.101380 AACAACAACACGTGCGGC 59.899 55.556 17.22 0.00 0.00 6.53
2136 2363 2.220887 GCAACAACAACACGTGCGG 61.221 57.895 17.22 10.66 0.00 5.69
2137 2364 2.554947 CGCAACAACAACACGTGCG 61.555 57.895 17.22 9.95 37.93 5.34
2138 2365 2.844685 GCGCAACAACAACACGTGC 61.845 57.895 17.22 0.00 0.00 5.34
2139 2366 2.554947 CGCGCAACAACAACACGTG 61.555 57.895 15.48 15.48 0.00 4.49
2140 2367 2.276994 CGCGCAACAACAACACGT 60.277 55.556 8.75 0.00 0.00 4.49
2141 2368 3.667486 GCGCGCAACAACAACACG 61.667 61.111 29.10 0.00 0.00 4.49
2142 2369 2.277884 AGCGCGCAACAACAACAC 60.278 55.556 35.10 0.00 0.00 3.32
2143 2370 2.024022 GAGCGCGCAACAACAACA 59.976 55.556 35.10 0.00 0.00 3.33
2144 2371 0.934436 AATGAGCGCGCAACAACAAC 60.934 50.000 35.10 13.29 0.00 3.32
2145 2372 0.660005 GAATGAGCGCGCAACAACAA 60.660 50.000 35.10 10.95 0.00 2.83
2146 2373 1.082169 GAATGAGCGCGCAACAACA 60.082 52.632 35.10 22.92 0.00 3.33
2147 2374 1.061799 CTGAATGAGCGCGCAACAAC 61.062 55.000 35.10 25.76 0.00 3.32
2148 2375 1.207339 CTGAATGAGCGCGCAACAA 59.793 52.632 35.10 15.78 0.00 2.83
2149 2376 2.679934 CCTGAATGAGCGCGCAACA 61.680 57.895 35.10 30.39 0.00 3.33
2150 2377 2.099062 CCTGAATGAGCGCGCAAC 59.901 61.111 35.10 25.80 0.00 4.17
2151 2378 3.126879 CCCTGAATGAGCGCGCAA 61.127 61.111 35.10 21.90 0.00 4.85
2152 2379 3.899981 AACCCTGAATGAGCGCGCA 62.900 57.895 35.10 18.17 0.00 6.09
2153 2380 3.100862 GAACCCTGAATGAGCGCGC 62.101 63.158 26.66 26.66 0.00 6.86
2154 2381 2.464459 GGAACCCTGAATGAGCGCG 61.464 63.158 0.00 0.00 0.00 6.86
2155 2382 3.502572 GGAACCCTGAATGAGCGC 58.497 61.111 0.00 0.00 0.00 5.92
2174 2401 4.863925 GTCAGCCTCTCGAGCGCC 62.864 72.222 17.53 0.00 34.64 6.53
2175 2402 4.863925 GGTCAGCCTCTCGAGCGC 62.864 72.222 7.81 11.84 34.64 5.92
2176 2403 4.200283 GGGTCAGCCTCTCGAGCG 62.200 72.222 7.81 0.13 34.64 5.03
2177 2404 2.757917 AGGGTCAGCCTCTCGAGC 60.758 66.667 7.81 0.00 34.45 5.03
2178 2405 1.077068 AGAGGGTCAGCCTCTCGAG 60.077 63.158 20.46 5.93 40.17 4.04
2179 2406 1.077357 GAGAGGGTCAGCCTCTCGA 60.077 63.158 32.28 0.00 46.78 4.04
2180 2407 3.520402 GAGAGGGTCAGCCTCTCG 58.480 66.667 32.28 0.00 46.78 4.04
2182 2409 2.043450 CGGAGAGGGTCAGCCTCT 60.043 66.667 26.07 26.07 45.96 3.69
2183 2410 3.844090 GCGGAGAGGGTCAGCCTC 61.844 72.222 15.73 15.73 40.25 4.70
2186 2413 4.803426 CACGCGGAGAGGGTCAGC 62.803 72.222 12.47 0.00 44.78 4.26
2187 2414 4.803426 GCACGCGGAGAGGGTCAG 62.803 72.222 12.47 0.00 44.78 3.51
2188 2415 3.931190 TAGCACGCGGAGAGGGTCA 62.931 63.158 12.47 0.00 44.78 4.02
2189 2416 3.138798 TAGCACGCGGAGAGGGTC 61.139 66.667 12.47 0.00 44.78 4.46
2191 2418 4.208686 GGTAGCACGCGGAGAGGG 62.209 72.222 12.47 0.00 38.93 4.30
2192 2419 3.127352 GAGGTAGCACGCGGAGAGG 62.127 68.421 12.47 0.00 0.00 3.69
2193 2420 2.409651 GAGGTAGCACGCGGAGAG 59.590 66.667 12.47 0.00 0.00 3.20
2194 2421 3.506096 CGAGGTAGCACGCGGAGA 61.506 66.667 12.47 0.00 0.00 3.71
2195 2422 3.506096 TCGAGGTAGCACGCGGAG 61.506 66.667 12.47 3.23 0.00 4.63
2196 2423 3.807538 GTCGAGGTAGCACGCGGA 61.808 66.667 12.47 0.00 0.00 5.54
2197 2424 4.849329 GGTCGAGGTAGCACGCGG 62.849 72.222 12.47 0.00 0.00 6.46
2198 2425 3.812019 AGGTCGAGGTAGCACGCG 61.812 66.667 3.53 3.53 0.00 6.01
2199 2426 2.202623 CAGGTCGAGGTAGCACGC 60.203 66.667 6.89 2.71 0.00 5.34
2200 2427 2.490217 CCAGGTCGAGGTAGCACG 59.510 66.667 5.35 5.35 0.00 5.34
2201 2428 2.893398 CCCAGGTCGAGGTAGCAC 59.107 66.667 0.00 0.00 0.00 4.40
2202 2429 3.075005 GCCCAGGTCGAGGTAGCA 61.075 66.667 0.00 0.00 0.00 3.49
2203 2430 2.359967 AAGCCCAGGTCGAGGTAGC 61.360 63.158 0.00 0.00 0.00 3.58
2204 2431 4.035843 AAGCCCAGGTCGAGGTAG 57.964 61.111 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.