AutoCloner

Multiple sequence alignment - TraesCS6A01G370400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G370400	chr6A	100.000	3829	0	0	1	3829	595327800	595331628	0.000000e+00	7071.0
1	TraesCS6A01G370400	chr6A	78.571	994	180	21	858	1828	594990110	594989127	3.250000e-175	625.0
2	TraesCS6A01G370400	chr6A	80.155	776	106	31	1669	2425	595414869	595415615	1.570000e-148	536.0
3	TraesCS6A01G370400	chr6A	80.769	130	10	8	3692	3821	595413780	595413894	1.890000e-13	87.9
4	TraesCS6A01G370400	chr6A	94.737	38	0	2	2978	3013	79332695	79332658	1.490000e-04	58.4
5	TraesCS6A01G370400	chr6D	94.886	3520	122	18	1	3497	449766780	449770264	0.000000e+00	5450.0
6	TraesCS6A01G370400	chr6D	91.915	3661	235	24	1	3628	449503134	449506766	0.000000e+00	5064.0
7	TraesCS6A01G370400	chr6D	78.200	1000	173	23	853	1828	449145142	449144164	7.080000e-167	597.0
8	TraesCS6A01G370400	chr6D	93.583	187	9	3	3642	3827	449507069	449507253	3.770000e-70	276.0
9	TraesCS6A01G370400	chr6B	89.166	3655	308	43	30	3628	681831970	681835592	0.000000e+00	4475.0
10	TraesCS6A01G370400	chr6B	88.817	3684	316	49	1	3628	681170249	681173892	0.000000e+00	4433.0
11	TraesCS6A01G370400	chr6B	74.480	1779	340	70	825	2542	681205109	681206834	0.000000e+00	665.0
12	TraesCS6A01G370400	chr6B	80.606	825	143	9	864	1672	680931421	680932244	4.200000e-174	621.0
13	TraesCS6A01G370400	chr6B	78.059	989	183	21	864	1828	680737183	680736205	9.160000e-166	593.0
14	TraesCS6A01G370400	chr6B	90.385	208	11	4	3626	3827	681835876	681836080	8.160000e-67	265.0
15	TraesCS6A01G370400	chr6B	91.176	136	8	4	3626	3757	681174176	681174311	8.450000e-42	182.0
16	TraesCS6A01G370400	chr6B	95.455	44	2	0	3778	3821	681174304	681174347	1.910000e-08	71.3
17	TraesCS6A01G370400	chrUn	80.123	810	148	5	864	1660	214050846	214050037	3.290000e-165	592.0
18	TraesCS6A01G370400	chrUn	80.123	810	148	5	864	1660	240294239	240295048	3.290000e-165	592.0
19	TraesCS6A01G370400	chr4D	84.488	303	41	5	3331	3628	343092884	343092583	1.040000e-75	294.0
20	TraesCS6A01G370400	chr2A	83.934	305	42	5	3331	3628	21147080	21147384	6.260000e-73	285.0
21	TraesCS6A01G370400	chr5D	83.654	312	39	6	3334	3635	133538697	133539006	2.250000e-72	283.0
22	TraesCS6A01G370400	chr5D	88.679	53	2	3	2971	3022	399337456	399337407	1.150000e-05	62.1
23	TraesCS6A01G370400	chr1B	82.951	305	45	4	3331	3628	402785790	402785486	6.310000e-68	268.0
24	TraesCS6A01G370400	chr5B	82.623	305	47	2	3330	3628	594754130	594753826	8.160000e-67	265.0
25	TraesCS6A01G370400	chr7B	87.037	54	4	2	2963	3013	485454520	485454573	1.490000e-04	58.4
26	TraesCS6A01G370400	chr7B	86.275	51	5	2	2964	3013	165296697	165296746	2.000000e-03	54.7
27	TraesCS6A01G370400	chr1A	94.444	36	1	1	2985	3020	285989887	285989853	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G370400	chr6A	595327800	595331628	3828	False	7071.00	7071	100.0000	1	3829	1	chr6A.!!$F1	3828
1	TraesCS6A01G370400	chr6A	594989127	594990110	983	True	625.00	625	78.5710	858	1828	1	chr6A.!!$R2	970
2	TraesCS6A01G370400	chr6A	595413780	595415615	1835	False	311.95	536	80.4620	1669	3821	2	chr6A.!!$F2	2152
3	TraesCS6A01G370400	chr6D	449766780	449770264	3484	False	5450.00	5450	94.8860	1	3497	1	chr6D.!!$F1	3496
4	TraesCS6A01G370400	chr6D	449503134	449507253	4119	False	2670.00	5064	92.7490	1	3827	2	chr6D.!!$F2	3826
5	TraesCS6A01G370400	chr6D	449144164	449145142	978	True	597.00	597	78.2000	853	1828	1	chr6D.!!$R1	975
6	TraesCS6A01G370400	chr6B	681831970	681836080	4110	False	2370.00	4475	89.7755	30	3827	2	chr6B.!!$F4	3797
7	TraesCS6A01G370400	chr6B	681170249	681174347	4098	False	1562.10	4433	91.8160	1	3821	3	chr6B.!!$F3	3820
8	TraesCS6A01G370400	chr6B	681205109	681206834	1725	False	665.00	665	74.4800	825	2542	1	chr6B.!!$F2	1717
9	TraesCS6A01G370400	chr6B	680931421	680932244	823	False	621.00	621	80.6060	864	1672	1	chr6B.!!$F1	808
10	TraesCS6A01G370400	chr6B	680736205	680737183	978	True	593.00	593	78.0590	864	1828	1	chr6B.!!$R1	964
11	TraesCS6A01G370400	chrUn	214050037	214050846	809	True	592.00	592	80.1230	864	1660	1	chrUn.!!$R1	796
12	TraesCS6A01G370400	chrUn	240294239	240295048	809	False	592.00	592	80.1230	864	1660	1	chrUn.!!$F1	796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
94	95	1.076024	AGATGTGGTTGCACAGGGAAT	59.924	47.619	0.00	0.00	38.59	3.01	F
224	225	1.614241	GCCAGTCGACCCACACCTAT	61.614	60.000	13.01	0.00	0.00	2.57	F
225	226	1.771565	CCAGTCGACCCACACCTATA	58.228	55.000	13.01	0.00	0.00	1.31	F
539	541	3.137360	AGCAACCTTCACTTCTTCCTCTT	59.863	43.478	0.00	0.00	0.00	2.85	F
2016	2712	0.624500	TGGGATTTAGAGGGCTGCCT	60.625	55.000	19.68	4.34	0.00	4.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1008	1026	2.666526	GATTCCCCGCGGAGATGC	60.667	66.667	30.73	10.37	40.10	3.91	R
1098	1125	4.009675	ACACCAGTGCGTAATCAATCAAT	58.990	39.130	0.00	0.00	0.00	2.57	R
1175	1205	4.260170	GAGATTGAGAGGCACATCAAACT	58.740	43.478	8.23	8.23	40.11	2.66	R
2249	2949	2.793790	TGCGCACACACAAATGATTTTC	59.206	40.909	5.66	0.00	0.00	2.29	R
3534	4268	0.457166	CGACATCGCTGGTAACCGAA	60.457	55.000	0.00	0.00	37.00	4.30	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	95	1.076024	AGATGTGGTTGCACAGGGAAT	59.924	47.619	0.00	0.00	38.59	3.01
129	130	5.094387	TCCAAGAGGAAGGAAGACAATACT	58.906	41.667	0.00	0.00	42.23	2.12
224	225	1.614241	GCCAGTCGACCCACACCTAT	61.614	60.000	13.01	0.00	0.00	2.57
225	226	1.771565	CCAGTCGACCCACACCTATA	58.228	55.000	13.01	0.00	0.00	1.31
416	418	4.882842	ACAGGACTCTTCTTCTTCTTCC	57.117	45.455	0.00	0.00	0.00	3.46
417	419	4.488770	ACAGGACTCTTCTTCTTCTTCCT	58.511	43.478	0.00	0.00	31.97	3.36
539	541	3.137360	AGCAACCTTCACTTCTTCCTCTT	59.863	43.478	0.00	0.00	0.00	2.85
541	543	4.745172	GCAACCTTCACTTCTTCCTCTTCT	60.745	45.833	0.00	0.00	0.00	2.85
972	977	4.015084	CTGCTCTTCATCTTTGATGGGTT	58.985	43.478	7.58	0.00	31.65	4.11
1000	1018	3.907474	TCCCAAGATACAGTTGGTGAAGA	59.093	43.478	1.40	0.00	42.69	2.87
1008	1026	3.415212	ACAGTTGGTGAAGATGGTCATG	58.585	45.455	0.00	0.00	0.00	3.07
1098	1125	4.013728	ACACTTTCACAAACACCAAGCTA	58.986	39.130	0.00	0.00	0.00	3.32
1153	1180	4.640789	GAGCTAGTAGTAAGAGCTGCAA	57.359	45.455	10.96	0.00	46.42	4.08
1284	1315	1.844289	AGGGTGCCCGGTGTTAGAA	60.844	57.895	0.00	0.00	41.95	2.10
1363	1395	1.831106	AGCGTCTATCCATCACCAACA	59.169	47.619	0.00	0.00	0.00	3.33
1665	1705	4.307032	AATGGTATGCTTCCACACTCTT	57.693	40.909	0.00	0.00	37.81	2.85
2016	2712	0.624500	TGGGATTTAGAGGGCTGCCT	60.625	55.000	19.68	4.34	0.00	4.75
2189	2887	7.710907	TGTATTTCCATGTATGTGCTAGTCTTC	59.289	37.037	0.00	0.00	0.00	2.87
2249	2949	1.680338	GGGGTCCAGGAAATGATTCG	58.320	55.000	0.00	0.00	36.36	3.34
2390	3090	2.014857	CATCAAGACTCCAGCACCATG	58.985	52.381	0.00	0.00	0.00	3.66
2496	3203	7.859325	ACACGTTAGCTTTACAAATCCATAT	57.141	32.000	0.00	0.00	0.00	1.78
2545	3252	2.401583	AACTGGATTGCACGCTCATA	57.598	45.000	0.00	0.00	0.00	2.15
2568	3297	8.546322	CATAGGGTTAAGGGTTTAGTTACTCTT	58.454	37.037	0.00	0.00	41.58	2.85
2781	3510	0.537188	CCTTGCCACGACCTACTGAT	59.463	55.000	0.00	0.00	0.00	2.90
2798	3527	8.803235	ACCTACTGATGCGATCTATAAATTGTA	58.197	33.333	0.00	0.00	0.00	2.41
2813	3542	3.681593	ATTGTATGGCTTTTTGCAGCA	57.318	38.095	0.00	0.00	45.15	4.41
2823	3552	2.925416	TTTTGCAGCAGTGGGAGCCA	62.925	55.000	0.00	0.00	0.00	4.75
3158	3887	0.657312	ACCGAAACCGTTTCCGTTTC	59.343	50.000	16.61	3.84	36.30	2.78
3159	3888	0.041047	CCGAAACCGTTTCCGTTTCC	60.041	55.000	16.61	0.00	36.30	3.13
3160	3889	0.383368	CGAAACCGTTTCCGTTTCCG	60.383	55.000	16.61	2.16	36.30	4.30
3161	3890	0.657312	GAAACCGTTTCCGTTTCCGT	59.343	50.000	12.28	0.00	32.71	4.69
3162	3891	1.063912	GAAACCGTTTCCGTTTCCGTT	59.936	47.619	12.28	0.00	32.71	4.44
3163	3892	1.093972	AACCGTTTCCGTTTCCGTTT	58.906	45.000	0.00	0.00	0.00	3.60
3239	3968	7.886629	TCCTTAATGAGAAATGGAAATCAGG	57.113	36.000	0.00	0.00	0.00	3.86
3247	3976	1.570857	ATGGAAATCAGGCCCGGACA	61.571	55.000	0.73	0.00	0.00	4.02
3288	4017	0.889186	GTCCGTGTGCCCTGTTTGAT	60.889	55.000	0.00	0.00	0.00	2.57
3378	4107	0.676736	GGCGAGATCTTCTTCCCGAT	59.323	55.000	0.00	0.00	0.00	4.18
3405	4139	6.432783	TCAATGACGGTGTTGGAAGATTTATT	59.567	34.615	0.00	0.00	0.00	1.40
3417	4151	8.557029	GTTGGAAGATTTATTTAGGTATGGTCG	58.443	37.037	0.00	0.00	0.00	4.79
3436	4170	1.391485	CGTTCAGATCTTGCTTCACCG	59.609	52.381	0.00	0.00	0.00	4.94
3515	4249	2.338620	CCGACTGCAACGTCCTCA	59.661	61.111	11.05	0.00	0.00	3.86
3516	4250	1.734477	CCGACTGCAACGTCCTCAG	60.734	63.158	11.05	9.28	0.00	3.35
3522	4256	0.250252	TGCAACGTCCTCAGCAATGA	60.250	50.000	0.00	0.00	33.48	2.57
3534	4268	6.017605	GTCCTCAGCAATGATGATTCGTATTT	60.018	38.462	0.29	0.00	0.00	1.40
3537	4271	6.421405	TCAGCAATGATGATTCGTATTTTCG	58.579	36.000	0.00	0.00	0.00	3.46
3539	4273	5.296780	AGCAATGATGATTCGTATTTTCGGT	59.703	36.000	0.00	0.00	0.00	4.69
3541	4275	7.011950	AGCAATGATGATTCGTATTTTCGGTTA	59.988	33.333	0.00	0.00	0.00	2.85
3545	4279	6.256975	TGATGATTCGTATTTTCGGTTACCAG	59.743	38.462	1.13	0.00	0.00	4.00
3555	4289	3.661745	GGTTACCAGCGATGTCGAT	57.338	52.632	6.60	0.00	43.02	3.59
3566	4300	1.203928	GATGTCGATCTGGCTGTTCG	58.796	55.000	15.92	15.92	38.74	3.95
3597	4332	2.235402	CCTAGAATACCGGTGTTGGTGT	59.765	50.000	22.34	5.76	43.68	4.16
3601	4336	2.943036	ATACCGGTGTTGGTGTTCTT	57.057	45.000	19.93	0.00	43.68	2.52
3602	4337	1.956297	TACCGGTGTTGGTGTTCTTG	58.044	50.000	19.93	0.00	43.68	3.02
3628	4363	7.535139	CCGATGTTGGTTGATTACTTTAATGT	58.465	34.615	0.00	0.00	0.00	2.71
3689	4713	1.819903	GGGAGTCAACGCTTAGTCTCT	59.180	52.381	0.00	0.00	0.00	3.10
3697	4722	4.037089	TCAACGCTTAGTCTCTGTGTGTTA	59.963	41.667	0.00	0.00	31.41	2.41
3743	4768	6.618287	TCATCAAGTTCAATCTCGTTTGTT	57.382	33.333	0.00	0.00	0.00	2.83
3749	4775	1.529438	TCAATCTCGTTTGTTGTCCGC	59.471	47.619	0.00	0.00	0.00	5.54
3756	4782	4.973055	TTGTTGTCCGCCCGTCCG	62.973	66.667	0.00	0.00	0.00	4.79
3807	4837	1.923864	CATGTACGCACATAGTTCGCA	59.076	47.619	0.00	0.00	43.73	5.10
3821	4851	2.357952	AGTTCGCAGGAGAAAAACAACC	59.642	45.455	0.00	0.00	0.00	3.77
3827	4857	3.243401	GCAGGAGAAAAACAACCGACATT	60.243	43.478	0.00	0.00	0.00	2.71
3828	4858	4.290155	CAGGAGAAAAACAACCGACATTG	58.710	43.478	0.00	0.00	35.59	2.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	95	8.101309	TCCTTCCTCTTGGATTATGTATTTCA	57.899	34.615	0.00	0.00	42.81	2.69
129	130	4.502105	TCGATCAGATTCATTTTCCCCA	57.498	40.909	0.00	0.00	0.00	4.96
224	225	2.588464	TTTCCAAAAGGCCGATGGTA	57.412	45.000	19.75	10.91	35.66	3.25
225	226	1.710816	TTTTCCAAAAGGCCGATGGT	58.289	45.000	19.75	0.00	35.66	3.55
398	400	4.770010	TGAGAGGAAGAAGAAGAAGAGTCC	59.230	45.833	0.00	0.00	0.00	3.85
416	418	1.265236	AGCTTCACCTCCACTGAGAG	58.735	55.000	0.00	0.00	41.42	3.20
417	419	1.345741	CAAGCTTCACCTCCACTGAGA	59.654	52.381	0.00	0.00	41.42	3.27
613	615	1.272554	CCCACTAACCCCTCACCTCC	61.273	65.000	0.00	0.00	0.00	4.30
659	661	1.593196	CAATGGTCGTTGGTGACTGT	58.407	50.000	0.00	0.00	38.91	3.55
972	977	5.943416	CACCAACTGTATCTTGGGAACATTA	59.057	40.000	2.40	0.00	42.34	1.90
1000	1018	1.596203	CGCGGAGATGCATGACCAT	60.596	57.895	2.46	0.00	34.15	3.55
1008	1026	2.666526	GATTCCCCGCGGAGATGC	60.667	66.667	30.73	10.37	40.10	3.91
1098	1125	4.009675	ACACCAGTGCGTAATCAATCAAT	58.990	39.130	0.00	0.00	0.00	2.57
1175	1205	4.260170	GAGATTGAGAGGCACATCAAACT	58.740	43.478	8.23	8.23	40.11	2.66
1284	1315	5.609423	CTGCAAAGCTGGATACTTAGATCT	58.391	41.667	0.00	0.00	37.61	2.75
1363	1395	6.019152	GCACATCGTGACGTAAATAACAAAT	58.981	36.000	4.40	0.00	35.23	2.32
1665	1705	6.539103	GCAAATTAACACCAAGGGTAAAAACA	59.461	34.615	0.00	0.00	32.11	2.83
1756	2438	8.763049	AAATAGAAGTACTAAACCGTGGTAAC	57.237	34.615	0.00	0.00	34.56	2.50
1794	2476	8.498054	ACGTTATTCATCATTGATTTGAGAGT	57.502	30.769	0.00	0.00	0.00	3.24
2169	2865	4.290093	AGGAAGACTAGCACATACATGGA	58.710	43.478	0.00	0.00	0.00	3.41
2189	2887	8.025445	GGCTCTGCATGATACAAAATATTTAGG	58.975	37.037	0.01	0.00	0.00	2.69
2249	2949	2.793790	TGCGCACACACAAATGATTTTC	59.206	40.909	5.66	0.00	0.00	2.29
2545	3252	7.398289	AAAGAGTAACTAAACCCTTAACCCT	57.602	36.000	0.00	0.00	0.00	4.34
2568	3297	7.687941	TGGCAAGTTTTCAAACCAAATTAAA	57.312	28.000	0.00	0.00	39.71	1.52
2586	3315	7.067372	TGGATACTGATTTACAAGAATGGCAAG	59.933	37.037	0.00	0.00	37.61	4.01
2781	3510	7.744087	AAAGCCATACAATTTATAGATCGCA	57.256	32.000	0.00	0.00	0.00	5.10
2798	3527	0.034337	CCACTGCTGCAAAAAGCCAT	59.966	50.000	3.02	0.00	44.83	4.40
2983	3712	1.109323	GGGCACAACTCAACAAGCCT	61.109	55.000	0.00	0.00	41.71	4.58
3158	3887	4.796312	CAGTTTACAACTTCAACCAAACGG	59.204	41.667	0.00	0.00	40.46	4.44
3159	3888	5.285134	CACAGTTTACAACTTCAACCAAACG	59.715	40.000	0.00	0.00	40.46	3.60
3160	3889	6.383415	TCACAGTTTACAACTTCAACCAAAC	58.617	36.000	0.00	0.00	40.46	2.93
3161	3890	6.576662	TCACAGTTTACAACTTCAACCAAA	57.423	33.333	0.00	0.00	40.46	3.28
3162	3891	6.405286	CCATCACAGTTTACAACTTCAACCAA	60.405	38.462	0.00	0.00	40.46	3.67
3163	3892	5.067153	CCATCACAGTTTACAACTTCAACCA	59.933	40.000	0.00	0.00	40.46	3.67
3239	3968	2.088423	TCAACATAACAATGTCCGGGC	58.912	47.619	0.00	0.00	32.87	6.13
3247	3976	6.183360	GGACCGATTCCATTCAACATAACAAT	60.183	38.462	0.00	0.00	45.10	2.71
3288	4017	4.277476	TCTTTCAAAAGAAACTCAGGCCA	58.723	39.130	5.01	0.00	41.75	5.36
3335	4064	7.041576	GCCGTAGAATAAAGGGACGAAAATTAT	60.042	37.037	0.00	0.00	35.59	1.28
3352	4081	3.004944	GGAAGAAGATCTCGCCGTAGAAT	59.995	47.826	0.00	0.00	0.00	2.40
3356	4085	1.030457	GGGAAGAAGATCTCGCCGTA	58.970	55.000	0.00	0.00	0.00	4.02
3378	4107	2.158885	TCTTCCAACACCGTCATTGACA	60.159	45.455	16.61	0.00	32.09	3.58
3405	4139	5.681437	GCAAGATCTGAACGACCATACCTAA	60.681	44.000	0.00	0.00	0.00	2.69
3417	4151	1.734465	CCGGTGAAGCAAGATCTGAAC	59.266	52.381	0.00	0.00	0.00	3.18
3436	4170	6.254281	TGAGAAGAAATCGAAAACCAATCC	57.746	37.500	0.00	0.00	0.00	3.01
3515	4249	5.296780	ACCGAAAATACGAATCATCATTGCT	59.703	36.000	0.00	0.00	35.09	3.91
3516	4250	5.510671	ACCGAAAATACGAATCATCATTGC	58.489	37.500	0.00	0.00	35.09	3.56
3522	4256	5.007332	GCTGGTAACCGAAAATACGAATCAT	59.993	40.000	0.00	0.00	35.09	2.45
3534	4268	0.457166	CGACATCGCTGGTAACCGAA	60.457	55.000	0.00	0.00	37.00	4.30
3537	4271	1.067212	AGATCGACATCGCTGGTAACC	59.933	52.381	0.00	0.00	39.60	2.85
3539	4273	1.067060	CCAGATCGACATCGCTGGTAA	59.933	52.381	15.74	0.00	41.52	2.85
3541	4275	1.439228	CCAGATCGACATCGCTGGT	59.561	57.895	15.74	0.00	41.52	4.00
3545	4279	0.807667	AACAGCCAGATCGACATCGC	60.808	55.000	0.00	0.00	39.60	4.58
3549	4283	1.215382	CCGAACAGCCAGATCGACA	59.785	57.895	7.80	0.00	44.30	4.35
3555	4289	1.673920	GACAAAAACCGAACAGCCAGA	59.326	47.619	0.00	0.00	0.00	3.86
3566	4300	3.943381	CCGGTATTCTAGGGACAAAAACC	59.057	47.826	0.00	0.00	0.00	3.27
3597	4332	1.974265	TCAACCAACATCGGCAAGAA	58.026	45.000	0.00	0.00	0.00	2.52
3601	4336	3.066291	AGTAATCAACCAACATCGGCA	57.934	42.857	0.00	0.00	0.00	5.69
3602	4337	4.434713	AAAGTAATCAACCAACATCGGC	57.565	40.909	0.00	0.00	0.00	5.54
3631	4366	6.439058	AGGTCTAACATCTAGAAGTCTTTGCT	59.561	38.462	0.26	0.00	0.00	3.91
3632	4367	6.533367	CAGGTCTAACATCTAGAAGTCTTTGC	59.467	42.308	0.26	0.00	0.00	3.68
3633	4368	7.831753	TCAGGTCTAACATCTAGAAGTCTTTG	58.168	38.462	0.26	0.00	0.00	2.77
3634	4369	8.308207	GTTCAGGTCTAACATCTAGAAGTCTTT	58.692	37.037	0.26	0.00	0.00	2.52
3635	4370	7.093684	GGTTCAGGTCTAACATCTAGAAGTCTT	60.094	40.741	0.26	0.00	0.00	3.01
3636	4371	6.378848	GGTTCAGGTCTAACATCTAGAAGTCT	59.621	42.308	0.26	0.00	0.00	3.24
3638	4373	6.153680	CAGGTTCAGGTCTAACATCTAGAAGT	59.846	42.308	0.00	0.00	0.00	3.01
3639	4374	6.406400	CCAGGTTCAGGTCTAACATCTAGAAG	60.406	46.154	0.00	0.00	0.00	2.85
3640	4375	5.422331	CCAGGTTCAGGTCTAACATCTAGAA	59.578	44.000	0.00	0.00	0.00	2.10
3689	4713	7.275888	AGAAAAGAAGATGCATTAACACACA	57.724	32.000	0.00	0.00	0.00	3.72
3697	4722	7.673180	TGAAATGGAAGAAAAGAAGATGCATT	58.327	30.769	0.00	0.00	34.17	3.56
3756	4782	1.598130	GCCAGGATACGGTGCCATC	60.598	63.158	0.00	0.00	46.39	3.51
3807	4837	4.568152	CAATGTCGGTTGTTTTTCTCCT	57.432	40.909	0.00	0.00	0.00	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.