Multiple sequence alignment - TraesCS6A01G368900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G368900 chr6A 100.000 4597 0 0 1 4597 594818261 594822857 0.000000e+00 8490.0
1 TraesCS6A01G368900 chr6A 83.041 171 14 7 1046 1216 594771812 594771967 1.720000e-29 141.0
2 TraesCS6A01G368900 chr6A 91.489 47 4 0 3819 3865 453856213 453856167 1.070000e-06 65.8
3 TraesCS6A01G368900 chr6A 94.872 39 2 0 3939 3977 594822162 594822200 1.380000e-05 62.1
4 TraesCS6A01G368900 chr6A 94.872 39 2 0 3902 3940 594822199 594822237 1.380000e-05 62.1
5 TraesCS6A01G368900 chr6D 96.382 3040 92 9 780 3811 448779393 448782422 0.000000e+00 4988.0
6 TraesCS6A01G368900 chr6B 95.726 1287 44 3 1181 2467 680471589 680472864 0.000000e+00 2061.0
7 TraesCS6A01G368900 chr6B 88.833 994 73 7 2976 3940 680473671 680474655 0.000000e+00 1186.0
8 TraesCS6A01G368900 chr6B 88.839 663 64 7 3939 4593 680474617 680475277 0.000000e+00 806.0
9 TraesCS6A01G368900 chr6B 95.833 240 6 2 935 1170 680471091 680471330 7.210000e-103 385.0
10 TraesCS6A01G368900 chr6B 80.625 160 18 5 4004 4151 60669371 60669213 1.350000e-20 111.0
11 TraesCS6A01G368900 chr1D 89.009 555 29 5 205 727 477862342 477861788 0.000000e+00 658.0
12 TraesCS6A01G368900 chr1D 86.096 561 39 10 205 727 389803740 389803181 6.670000e-158 568.0
13 TraesCS6A01G368900 chr1D 89.950 398 19 5 209 586 335351130 335350734 1.150000e-135 494.0
14 TraesCS6A01G368900 chr1D 87.097 403 32 4 205 587 487629612 487630014 5.460000e-119 438.0
15 TraesCS6A01G368900 chr1D 86.325 117 10 5 3969 4085 288938001 288937891 6.250000e-24 122.0
16 TraesCS6A01G368900 chr4B 88.448 554 29 6 205 727 433384132 433384681 1.800000e-178 636.0
17 TraesCS6A01G368900 chr4B 81.061 396 70 4 4184 4575 546571549 546571155 1.240000e-80 311.0
18 TraesCS6A01G368900 chr3B 87.379 515 31 6 205 687 455131435 455130923 1.120000e-155 560.0
19 TraesCS6A01G368900 chr3B 96.447 197 7 0 205 401 740502575 740502771 4.440000e-85 326.0
20 TraesCS6A01G368900 chr3B 72.787 305 69 13 4183 4480 444063056 444063353 1.760000e-14 91.6
21 TraesCS6A01G368900 chr3B 88.462 52 6 0 4522 4573 676936565 676936616 3.840000e-06 63.9
22 TraesCS6A01G368900 chr1B 85.766 555 46 6 205 727 679269049 679269602 1.440000e-154 556.0
23 TraesCS6A01G368900 chr1A 84.964 552 40 14 205 722 488193283 488192741 1.900000e-143 520.0
24 TraesCS6A01G368900 chr2B 78.109 402 72 8 4184 4573 217305389 217304992 1.650000e-59 241.0
25 TraesCS6A01G368900 chr2B 78.355 231 37 8 3953 4173 217396136 217395909 2.230000e-28 137.0
26 TraesCS6A01G368900 chr2D 89.286 84 6 3 4003 4085 145394979 145394898 8.140000e-18 102.0
27 TraesCS6A01G368900 chr2D 77.333 150 34 0 4424 4573 459037175 459037324 6.330000e-14 89.8
28 TraesCS6A01G368900 chr2A 86.905 84 8 3 4003 4085 154411497 154411416 1.760000e-14 91.6
29 TraesCS6A01G368900 chr5B 93.878 49 3 0 4005 4053 554545480 554545432 1.770000e-09 75.0
30 TraesCS6A01G368900 chr5B 96.774 31 1 0 4546 4576 638412447 638412417 8.000000e-03 52.8
31 TraesCS6A01G368900 chr5A 75.155 161 35 5 4296 4454 571752872 571753029 2.290000e-08 71.3
32 TraesCS6A01G368900 chr5A 92.000 50 4 0 4005 4054 572883409 572883360 2.290000e-08 71.3
33 TraesCS6A01G368900 chr5D 91.667 48 4 0 3818 3865 132473834 132473881 2.970000e-07 67.6
34 TraesCS6A01G368900 chr7D 97.368 38 1 0 4534 4571 244560898 244560861 1.070000e-06 65.8
35 TraesCS6A01G368900 chr7D 85.965 57 8 0 4516 4572 636764466 636764522 1.380000e-05 62.1
36 TraesCS6A01G368900 chr3D 91.304 46 4 0 4529 4574 50538394 50538349 3.840000e-06 63.9
37 TraesCS6A01G368900 chr4A 85.000 60 9 0 4512 4571 703616623 703616682 1.380000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G368900 chr6A 594818261 594822857 4596 False 2871.4 8490 96.581333 1 4597 3 chr6A.!!$F2 4596
1 TraesCS6A01G368900 chr6D 448779393 448782422 3029 False 4988.0 4988 96.382000 780 3811 1 chr6D.!!$F1 3031
2 TraesCS6A01G368900 chr6B 680471091 680475277 4186 False 1109.5 2061 92.307750 935 4593 4 chr6B.!!$F1 3658
3 TraesCS6A01G368900 chr1D 477861788 477862342 554 True 658.0 658 89.009000 205 727 1 chr1D.!!$R4 522
4 TraesCS6A01G368900 chr1D 389803181 389803740 559 True 568.0 568 86.096000 205 727 1 chr1D.!!$R3 522
5 TraesCS6A01G368900 chr4B 433384132 433384681 549 False 636.0 636 88.448000 205 727 1 chr4B.!!$F1 522
6 TraesCS6A01G368900 chr3B 455130923 455131435 512 True 560.0 560 87.379000 205 687 1 chr3B.!!$R1 482
7 TraesCS6A01G368900 chr1B 679269049 679269602 553 False 556.0 556 85.766000 205 727 1 chr1B.!!$F1 522
8 TraesCS6A01G368900 chr1A 488192741 488193283 542 True 520.0 520 84.964000 205 722 1 chr1A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.028242 TTGCGATGCGACAAAACGTT 59.972 45.0 0.00 0.0 35.59 3.99 F
135 136 0.105224 TTCTTCGCCTCGTCCACAAA 59.895 50.0 0.00 0.0 0.00 2.83 F
143 144 0.107831 CTCGTCCACAAACCTTCCCA 59.892 55.0 0.00 0.0 0.00 4.37 F
818 860 0.250081 CCTCCGGAGCCTTGAATAGC 60.250 60.0 26.87 0.0 0.00 2.97 F
1999 2296 0.450983 GGCAGAAGAAGCATGTCAGC 59.549 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 1064 0.820871 CTTCACTCCTTCCTCCTCCG 59.179 60.000 0.00 0.0 0.00 4.63 R
1024 1067 0.912006 GGGCTTCACTCCTTCCTCCT 60.912 60.000 0.00 0.0 0.00 3.69 R
1999 2296 1.153168 CTGGGCGGGATTACCAGTG 60.153 63.158 0.00 0.0 45.21 3.66 R
2338 2636 1.256812 TCTCTTCGCCTGACATGTGA 58.743 50.000 1.15 0.0 0.00 3.58 R
3862 4494 0.240945 CAAACGGCATCCAACCAGTC 59.759 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.479562 AGGCACTGGATGGGAAAGT 58.520 52.632 0.00 0.00 37.18 2.66
29 30 0.779997 AGGCACTGGATGGGAAAGTT 59.220 50.000 0.00 0.00 37.18 2.66
30 31 0.890683 GGCACTGGATGGGAAAGTTG 59.109 55.000 0.00 0.00 0.00 3.16
31 32 0.244721 GCACTGGATGGGAAAGTTGC 59.755 55.000 0.00 0.00 0.00 4.17
32 33 0.523072 CACTGGATGGGAAAGTTGCG 59.477 55.000 0.00 0.00 0.00 4.85
33 34 0.400213 ACTGGATGGGAAAGTTGCGA 59.600 50.000 0.00 0.00 0.00 5.10
34 35 1.004745 ACTGGATGGGAAAGTTGCGAT 59.995 47.619 0.00 0.00 0.00 4.58
35 36 1.402968 CTGGATGGGAAAGTTGCGATG 59.597 52.381 0.00 0.00 0.00 3.84
36 37 0.101219 GGATGGGAAAGTTGCGATGC 59.899 55.000 0.00 0.00 0.00 3.91
37 38 0.248215 GATGGGAAAGTTGCGATGCG 60.248 55.000 0.00 0.00 0.00 4.73
38 39 0.676466 ATGGGAAAGTTGCGATGCGA 60.676 50.000 0.00 0.00 0.00 5.10
39 40 1.134694 GGGAAAGTTGCGATGCGAC 59.865 57.895 0.82 0.82 42.78 5.19
40 41 1.573829 GGGAAAGTTGCGATGCGACA 61.574 55.000 11.46 0.00 44.70 4.35
41 42 0.237235 GGAAAGTTGCGATGCGACAA 59.763 50.000 11.46 0.93 44.70 3.18
42 43 1.334599 GGAAAGTTGCGATGCGACAAA 60.335 47.619 11.46 0.00 44.70 2.83
43 44 2.380660 GAAAGTTGCGATGCGACAAAA 58.619 42.857 11.46 0.00 44.70 2.44
44 45 1.753956 AAGTTGCGATGCGACAAAAC 58.246 45.000 11.46 0.00 44.70 2.43
45 46 0.384230 AGTTGCGATGCGACAAAACG 60.384 50.000 11.46 0.00 44.70 3.60
46 47 0.656205 GTTGCGATGCGACAAAACGT 60.656 50.000 4.32 0.00 42.10 3.99
47 48 0.028242 TTGCGATGCGACAAAACGTT 59.972 45.000 0.00 0.00 35.59 3.99
48 49 0.383737 TGCGATGCGACAAAACGTTC 60.384 50.000 0.00 0.00 35.59 3.95
49 50 0.383737 GCGATGCGACAAAACGTTCA 60.384 50.000 0.00 0.00 35.59 3.18
50 51 1.305482 CGATGCGACAAAACGTTCAC 58.695 50.000 0.00 0.00 35.59 3.18
51 52 1.305482 GATGCGACAAAACGTTCACG 58.695 50.000 0.00 6.63 46.33 4.35
61 62 3.524759 CGTTCACGTCGCTCGCTC 61.525 66.667 0.00 0.00 44.19 5.03
62 63 3.173240 GTTCACGTCGCTCGCTCC 61.173 66.667 0.00 0.00 44.19 4.70
63 64 3.666253 TTCACGTCGCTCGCTCCA 61.666 61.111 0.00 0.00 44.19 3.86
64 65 3.891586 TTCACGTCGCTCGCTCCAC 62.892 63.158 0.00 0.00 44.19 4.02
68 69 4.057428 GTCGCTCGCTCCACCACT 62.057 66.667 0.00 0.00 0.00 4.00
69 70 2.360726 TCGCTCGCTCCACCACTA 60.361 61.111 0.00 0.00 0.00 2.74
70 71 2.103143 CGCTCGCTCCACCACTAG 59.897 66.667 0.00 0.00 0.00 2.57
71 72 2.701780 CGCTCGCTCCACCACTAGT 61.702 63.158 0.00 0.00 0.00 2.57
72 73 1.139947 GCTCGCTCCACCACTAGTC 59.860 63.158 0.00 0.00 0.00 2.59
73 74 1.429825 CTCGCTCCACCACTAGTCG 59.570 63.158 0.00 0.00 0.00 4.18
74 75 1.303074 TCGCTCCACCACTAGTCGT 60.303 57.895 0.00 0.00 0.00 4.34
75 76 0.892358 TCGCTCCACCACTAGTCGTT 60.892 55.000 0.00 0.00 0.00 3.85
76 77 0.732880 CGCTCCACCACTAGTCGTTG 60.733 60.000 0.00 0.00 0.00 4.10
77 78 0.601558 GCTCCACCACTAGTCGTTGA 59.398 55.000 0.00 0.00 0.00 3.18
78 79 1.204941 GCTCCACCACTAGTCGTTGAT 59.795 52.381 0.00 0.00 0.00 2.57
79 80 2.353803 GCTCCACCACTAGTCGTTGATT 60.354 50.000 0.00 0.00 0.00 2.57
80 81 3.864921 GCTCCACCACTAGTCGTTGATTT 60.865 47.826 0.00 0.00 0.00 2.17
81 82 3.921677 TCCACCACTAGTCGTTGATTTC 58.078 45.455 0.00 0.00 0.00 2.17
82 83 3.576982 TCCACCACTAGTCGTTGATTTCT 59.423 43.478 0.00 0.00 0.00 2.52
83 84 4.039973 TCCACCACTAGTCGTTGATTTCTT 59.960 41.667 0.00 0.00 0.00 2.52
84 85 4.755123 CCACCACTAGTCGTTGATTTCTTT 59.245 41.667 0.00 0.00 0.00 2.52
85 86 5.238650 CCACCACTAGTCGTTGATTTCTTTT 59.761 40.000 0.00 0.00 0.00 2.27
86 87 6.136071 CACCACTAGTCGTTGATTTCTTTTG 58.864 40.000 0.00 0.00 0.00 2.44
87 88 6.018262 CACCACTAGTCGTTGATTTCTTTTGA 60.018 38.462 0.00 0.00 0.00 2.69
88 89 6.202954 ACCACTAGTCGTTGATTTCTTTTGAG 59.797 38.462 0.00 0.00 0.00 3.02
89 90 6.202954 CCACTAGTCGTTGATTTCTTTTGAGT 59.797 38.462 0.00 0.00 0.00 3.41
90 91 7.065894 CACTAGTCGTTGATTTCTTTTGAGTG 58.934 38.462 0.00 0.00 0.00 3.51
91 92 6.984474 ACTAGTCGTTGATTTCTTTTGAGTGA 59.016 34.615 0.00 0.00 0.00 3.41
92 93 6.867662 AGTCGTTGATTTCTTTTGAGTGAT 57.132 33.333 0.00 0.00 0.00 3.06
93 94 6.892691 AGTCGTTGATTTCTTTTGAGTGATC 58.107 36.000 0.00 0.00 0.00 2.92
94 95 6.483307 AGTCGTTGATTTCTTTTGAGTGATCA 59.517 34.615 0.00 0.00 0.00 2.92
95 96 6.575201 GTCGTTGATTTCTTTTGAGTGATCAC 59.425 38.462 18.47 18.47 0.00 3.06
96 97 6.483307 TCGTTGATTTCTTTTGAGTGATCACT 59.517 34.615 28.23 28.23 45.84 3.41
97 98 7.655732 TCGTTGATTTCTTTTGAGTGATCACTA 59.344 33.333 27.95 11.37 42.66 2.74
98 99 7.954248 CGTTGATTTCTTTTGAGTGATCACTAG 59.046 37.037 27.95 20.54 42.66 2.57
99 100 8.778358 GTTGATTTCTTTTGAGTGATCACTAGT 58.222 33.333 27.95 7.10 42.66 2.57
100 101 8.539770 TGATTTCTTTTGAGTGATCACTAGTC 57.460 34.615 27.95 16.43 42.66 2.59
101 102 8.150296 TGATTTCTTTTGAGTGATCACTAGTCA 58.850 33.333 27.95 18.81 42.66 3.41
102 103 9.160496 GATTTCTTTTGAGTGATCACTAGTCAT 57.840 33.333 27.95 16.02 42.66 3.06
103 104 8.908786 TTTCTTTTGAGTGATCACTAGTCATT 57.091 30.769 27.95 4.66 42.66 2.57
104 105 7.895975 TCTTTTGAGTGATCACTAGTCATTG 57.104 36.000 27.95 14.44 42.66 2.82
105 106 7.670364 TCTTTTGAGTGATCACTAGTCATTGA 58.330 34.615 27.95 16.26 42.66 2.57
106 107 8.316946 TCTTTTGAGTGATCACTAGTCATTGAT 58.683 33.333 27.95 2.25 42.66 2.57
107 108 8.853077 TTTTGAGTGATCACTAGTCATTGATT 57.147 30.769 27.95 1.68 42.66 2.57
108 109 8.853077 TTTGAGTGATCACTAGTCATTGATTT 57.147 30.769 27.95 1.46 42.66 2.17
109 110 7.838771 TGAGTGATCACTAGTCATTGATTTG 57.161 36.000 27.95 0.00 42.66 2.32
110 111 6.820152 TGAGTGATCACTAGTCATTGATTTGG 59.180 38.462 27.95 0.00 42.66 3.28
111 112 5.587844 AGTGATCACTAGTCATTGATTTGGC 59.412 40.000 26.87 0.00 40.43 4.52
112 113 4.571984 TGATCACTAGTCATTGATTTGGCG 59.428 41.667 0.00 0.00 32.43 5.69
113 114 2.677836 TCACTAGTCATTGATTTGGCGC 59.322 45.455 0.00 0.00 0.00 6.53
114 115 2.017049 ACTAGTCATTGATTTGGCGCC 58.983 47.619 22.73 22.73 0.00 6.53
115 116 1.334869 CTAGTCATTGATTTGGCGCCC 59.665 52.381 26.77 9.02 0.00 6.13
116 117 0.323725 AGTCATTGATTTGGCGCCCT 60.324 50.000 26.77 8.75 0.00 5.19
117 118 0.532115 GTCATTGATTTGGCGCCCTT 59.468 50.000 26.77 8.52 0.00 3.95
118 119 0.817013 TCATTGATTTGGCGCCCTTC 59.183 50.000 26.77 18.12 0.00 3.46
119 120 0.819582 CATTGATTTGGCGCCCTTCT 59.180 50.000 26.77 5.68 0.00 2.85
120 121 1.205417 CATTGATTTGGCGCCCTTCTT 59.795 47.619 26.77 3.75 0.00 2.52
121 122 0.887933 TTGATTTGGCGCCCTTCTTC 59.112 50.000 26.77 14.01 0.00 2.87
122 123 1.305219 TGATTTGGCGCCCTTCTTCG 61.305 55.000 26.77 0.00 0.00 3.79
128 129 4.436998 CGCCCTTCTTCGCCTCGT 62.437 66.667 0.00 0.00 0.00 4.18
129 130 2.509561 GCCCTTCTTCGCCTCGTC 60.510 66.667 0.00 0.00 0.00 4.20
130 131 2.184579 CCCTTCTTCGCCTCGTCC 59.815 66.667 0.00 0.00 0.00 4.79
131 132 2.646175 CCCTTCTTCGCCTCGTCCA 61.646 63.158 0.00 0.00 0.00 4.02
132 133 1.446272 CCTTCTTCGCCTCGTCCAC 60.446 63.158 0.00 0.00 0.00 4.02
133 134 1.289066 CTTCTTCGCCTCGTCCACA 59.711 57.895 0.00 0.00 0.00 4.17
134 135 0.319555 CTTCTTCGCCTCGTCCACAA 60.320 55.000 0.00 0.00 0.00 3.33
135 136 0.105224 TTCTTCGCCTCGTCCACAAA 59.895 50.000 0.00 0.00 0.00 2.83
136 137 0.599204 TCTTCGCCTCGTCCACAAAC 60.599 55.000 0.00 0.00 0.00 2.93
137 138 1.566018 CTTCGCCTCGTCCACAAACC 61.566 60.000 0.00 0.00 0.00 3.27
138 139 2.030562 CGCCTCGTCCACAAACCT 59.969 61.111 0.00 0.00 0.00 3.50
139 140 1.597027 CGCCTCGTCCACAAACCTT 60.597 57.895 0.00 0.00 0.00 3.50
140 141 1.566018 CGCCTCGTCCACAAACCTTC 61.566 60.000 0.00 0.00 0.00 3.46
141 142 1.235281 GCCTCGTCCACAAACCTTCC 61.235 60.000 0.00 0.00 0.00 3.46
142 143 0.605589 CCTCGTCCACAAACCTTCCC 60.606 60.000 0.00 0.00 0.00 3.97
143 144 0.107831 CTCGTCCACAAACCTTCCCA 59.892 55.000 0.00 0.00 0.00 4.37
144 145 0.768622 TCGTCCACAAACCTTCCCAT 59.231 50.000 0.00 0.00 0.00 4.00
145 146 1.979308 TCGTCCACAAACCTTCCCATA 59.021 47.619 0.00 0.00 0.00 2.74
146 147 2.574369 TCGTCCACAAACCTTCCCATAT 59.426 45.455 0.00 0.00 0.00 1.78
147 148 3.009695 TCGTCCACAAACCTTCCCATATT 59.990 43.478 0.00 0.00 0.00 1.28
148 149 3.761752 CGTCCACAAACCTTCCCATATTT 59.238 43.478 0.00 0.00 0.00 1.40
149 150 4.219725 CGTCCACAAACCTTCCCATATTTT 59.780 41.667 0.00 0.00 0.00 1.82
150 151 5.279256 CGTCCACAAACCTTCCCATATTTTT 60.279 40.000 0.00 0.00 0.00 1.94
179 180 9.567776 TGAGTCCAAACATACTTTCTTTATTCA 57.432 29.630 0.00 0.00 0.00 2.57
182 183 9.959749 GTCCAAACATACTTTCTTTATTCAACA 57.040 29.630 0.00 0.00 0.00 3.33
188 189 9.988350 ACATACTTTCTTTATTCAACAATAGCG 57.012 29.630 0.00 0.00 0.00 4.26
189 190 9.988350 CATACTTTCTTTATTCAACAATAGCGT 57.012 29.630 0.00 0.00 0.00 5.07
191 192 8.950403 ACTTTCTTTATTCAACAATAGCGTTC 57.050 30.769 0.00 0.00 0.00 3.95
192 193 8.564574 ACTTTCTTTATTCAACAATAGCGTTCA 58.435 29.630 0.00 0.00 0.00 3.18
193 194 9.559958 CTTTCTTTATTCAACAATAGCGTTCAT 57.440 29.630 0.00 0.00 0.00 2.57
194 195 8.894409 TTCTTTATTCAACAATAGCGTTCATG 57.106 30.769 0.00 0.00 0.00 3.07
195 196 7.471721 TCTTTATTCAACAATAGCGTTCATGG 58.528 34.615 0.00 0.00 0.00 3.66
196 197 4.637483 ATTCAACAATAGCGTTCATGGG 57.363 40.909 0.00 0.00 0.00 4.00
197 198 2.364632 TCAACAATAGCGTTCATGGGG 58.635 47.619 0.00 0.00 0.00 4.96
198 199 2.026729 TCAACAATAGCGTTCATGGGGA 60.027 45.455 0.00 0.00 0.00 4.81
199 200 2.951642 CAACAATAGCGTTCATGGGGAT 59.048 45.455 0.00 0.00 0.00 3.85
200 201 4.133820 CAACAATAGCGTTCATGGGGATA 58.866 43.478 0.00 0.00 0.00 2.59
201 202 3.740115 ACAATAGCGTTCATGGGGATAC 58.260 45.455 0.00 0.00 0.00 2.24
202 203 3.135712 ACAATAGCGTTCATGGGGATACA 59.864 43.478 0.00 0.00 39.74 2.29
203 204 4.133820 CAATAGCGTTCATGGGGATACAA 58.866 43.478 0.00 0.00 39.74 2.41
207 208 2.679639 GCGTTCATGGGGATACAACTCA 60.680 50.000 0.00 0.00 39.74 3.41
293 294 9.249053 TGCCTTTACATCATTAATTACCTGAAA 57.751 29.630 2.03 0.00 0.00 2.69
312 313 2.029838 AACAATCCGATGAGACCAGC 57.970 50.000 0.00 0.00 0.00 4.85
401 406 0.332972 GGGTCTGAAATTCCTGCCCT 59.667 55.000 8.07 0.00 0.00 5.19
406 430 3.129988 GTCTGAAATTCCTGCCCTGAATG 59.870 47.826 0.00 0.00 32.91 2.67
484 510 4.272991 AGAAGTAGCTCCATCTACGTTACG 59.727 45.833 2.19 2.19 42.73 3.18
566 593 2.950309 GCTGATGATGTTGGAGCAAGAT 59.050 45.455 0.00 0.00 29.97 2.40
616 655 2.034066 ATGGGTGGCTGGAACACG 59.966 61.111 0.00 0.00 39.69 4.49
640 679 4.992319 TGTTTGTAGATTGATTTCCGACGT 59.008 37.500 0.00 0.00 0.00 4.34
653 692 1.876263 CGACGTGCGTGCCATATCA 60.876 57.895 0.67 0.00 34.64 2.15
727 767 3.428045 GCATGGTGAACAGCCATAACTTC 60.428 47.826 0.00 0.00 44.25 3.01
728 768 3.788227 TGGTGAACAGCCATAACTTCT 57.212 42.857 1.63 0.00 0.00 2.85
729 769 4.098914 TGGTGAACAGCCATAACTTCTT 57.901 40.909 1.63 0.00 0.00 2.52
730 770 4.469657 TGGTGAACAGCCATAACTTCTTT 58.530 39.130 1.63 0.00 0.00 2.52
731 771 4.892934 TGGTGAACAGCCATAACTTCTTTT 59.107 37.500 1.63 0.00 0.00 2.27
732 772 5.362430 TGGTGAACAGCCATAACTTCTTTTT 59.638 36.000 1.63 0.00 0.00 1.94
758 798 4.320608 TTTGAGAAAATGGTGAACAGCC 57.679 40.909 1.63 0.00 0.00 4.85
759 799 2.942804 TGAGAAAATGGTGAACAGCCA 58.057 42.857 1.63 0.00 40.68 4.75
761 801 4.661222 TGAGAAAATGGTGAACAGCCATA 58.339 39.130 0.00 0.00 45.21 2.74
762 802 5.076182 TGAGAAAATGGTGAACAGCCATAA 58.924 37.500 0.00 0.00 45.21 1.90
763 803 5.048083 TGAGAAAATGGTGAACAGCCATAAC 60.048 40.000 0.00 0.00 45.21 1.89
764 804 5.079643 AGAAAATGGTGAACAGCCATAACT 58.920 37.500 0.00 0.00 45.21 2.24
765 805 5.539955 AGAAAATGGTGAACAGCCATAACTT 59.460 36.000 0.00 0.00 45.21 2.66
766 806 5.806654 AAATGGTGAACAGCCATAACTTT 57.193 34.783 0.00 0.00 45.21 2.66
767 807 4.789012 ATGGTGAACAGCCATAACTTTG 57.211 40.909 1.63 0.00 44.23 2.77
768 808 2.295909 TGGTGAACAGCCATAACTTTGC 59.704 45.455 1.63 0.00 0.00 3.68
769 809 2.295909 GGTGAACAGCCATAACTTTGCA 59.704 45.455 0.00 0.00 0.00 4.08
770 810 3.056607 GGTGAACAGCCATAACTTTGCAT 60.057 43.478 0.00 0.00 0.00 3.96
771 811 4.168760 GTGAACAGCCATAACTTTGCATC 58.831 43.478 0.00 0.00 0.00 3.91
772 812 4.081406 TGAACAGCCATAACTTTGCATCT 58.919 39.130 0.00 0.00 0.00 2.90
773 813 4.523943 TGAACAGCCATAACTTTGCATCTT 59.476 37.500 0.00 0.00 0.00 2.40
774 814 4.708726 ACAGCCATAACTTTGCATCTTC 57.291 40.909 0.00 0.00 0.00 2.87
775 815 4.338879 ACAGCCATAACTTTGCATCTTCT 58.661 39.130 0.00 0.00 0.00 2.85
776 816 4.397417 ACAGCCATAACTTTGCATCTTCTC 59.603 41.667 0.00 0.00 0.00 2.87
777 817 3.950395 AGCCATAACTTTGCATCTTCTCC 59.050 43.478 0.00 0.00 0.00 3.71
778 818 3.950395 GCCATAACTTTGCATCTTCTCCT 59.050 43.478 0.00 0.00 0.00 3.69
783 823 5.613358 AACTTTGCATCTTCTCCTTTACG 57.387 39.130 0.00 0.00 0.00 3.18
785 825 4.691216 ACTTTGCATCTTCTCCTTTACGAC 59.309 41.667 0.00 0.00 0.00 4.34
790 830 3.754188 TCTTCTCCTTTACGACGCTAC 57.246 47.619 0.00 0.00 0.00 3.58
804 846 1.340248 ACGCTACCATACATTCCTCCG 59.660 52.381 0.00 0.00 0.00 4.63
818 860 0.250081 CCTCCGGAGCCTTGAATAGC 60.250 60.000 26.87 0.00 0.00 2.97
853 895 2.667199 CCCGACACGGTGGGTTTC 60.667 66.667 13.48 0.00 46.80 2.78
862 904 1.000019 GGTGGGTTTCTTAGGCCCC 60.000 63.158 0.00 0.00 41.66 5.80
870 912 1.550130 TTCTTAGGCCCCCAGACACG 61.550 60.000 0.00 0.00 0.00 4.49
872 914 3.857521 TTAGGCCCCCAGACACGGT 62.858 63.158 0.00 0.00 0.00 4.83
879 921 3.744559 CCAGACACGGTGGGTTTG 58.255 61.111 13.48 4.99 0.00 2.93
880 922 2.551912 CCAGACACGGTGGGTTTGC 61.552 63.158 13.48 0.00 0.00 3.68
881 923 1.821759 CAGACACGGTGGGTTTGCA 60.822 57.895 13.48 0.00 0.00 4.08
918 960 4.101448 GGCCGATGTCAGCCCACT 62.101 66.667 0.00 0.00 43.76 4.00
928 970 4.175337 AGCCCACTGCACGTGTGT 62.175 61.111 18.38 13.53 44.83 3.72
932 974 2.053116 CACTGCACGTGTGTTCGC 60.053 61.111 18.38 1.30 38.84 4.70
949 991 4.137872 CAGCAGGCCGCAAATGGG 62.138 66.667 19.30 0.00 46.13 4.00
1170 1219 0.679505 TCGTCCTCCTCCAACAACAG 59.320 55.000 0.00 0.00 0.00 3.16
1189 1486 3.711782 CCTCCCTTCCCTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
1192 1489 4.845307 CCCTTCCCTCCCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
1514 1811 4.314440 TCAAGAACAGCGCCGCCT 62.314 61.111 4.98 0.00 0.00 5.52
1627 1924 1.741401 CAAGATCGACCCGCAGCAA 60.741 57.895 0.00 0.00 0.00 3.91
1996 2293 1.831580 AAGGGCAGAAGAAGCATGTC 58.168 50.000 0.00 0.00 0.00 3.06
1998 2295 1.093159 GGGCAGAAGAAGCATGTCAG 58.907 55.000 0.00 0.00 0.00 3.51
1999 2296 0.450983 GGCAGAAGAAGCATGTCAGC 59.549 55.000 0.00 0.00 0.00 4.26
2001 2298 1.135746 GCAGAAGAAGCATGTCAGCAC 60.136 52.381 0.00 0.00 36.85 4.40
2064 2362 0.831307 CCTCTTTTACCTCCGAGGGG 59.169 60.000 18.99 4.43 40.58 4.79
2080 2378 1.133199 AGGGGCAATGGAACTGACAAA 60.133 47.619 0.00 0.00 0.00 2.83
2231 2529 3.392882 AGATTGGCCTTTTGCTTTTTCG 58.607 40.909 3.32 0.00 40.92 3.46
2243 2541 7.435192 CCTTTTGCTTTTTCGTCTATTTTCTGT 59.565 33.333 0.00 0.00 0.00 3.41
2271 2569 2.106684 GAGGACTTCTCCCCTGTTTGTT 59.893 50.000 0.00 0.00 37.25 2.83
2276 2574 3.202151 ACTTCTCCCCTGTTTGTTTCTGA 59.798 43.478 0.00 0.00 0.00 3.27
2278 2576 3.754965 TCTCCCCTGTTTGTTTCTGATG 58.245 45.455 0.00 0.00 0.00 3.07
2287 2585 5.185454 TGTTTGTTTCTGATGTGAGAGTGT 58.815 37.500 0.00 0.00 0.00 3.55
2338 2636 6.566079 TGTCTTCAGTATTTCCATCCTGAT 57.434 37.500 0.00 0.00 34.19 2.90
2988 3590 0.035247 TGCACCACTGATATGCTGCA 60.035 50.000 4.13 4.13 40.13 4.41
3116 3718 6.305399 CGATGTTGTATTGCTGTTTTACCTTG 59.695 38.462 0.00 0.00 0.00 3.61
3143 3745 2.887152 ACCTCTGGAATTGCACAAACTC 59.113 45.455 0.00 0.00 0.00 3.01
3173 3775 0.826672 AAGTGACCCCGTCGACTCTT 60.827 55.000 14.70 4.13 34.95 2.85
3271 3873 1.606601 CAGGACCGACTGGGACTCA 60.607 63.158 0.00 0.00 40.75 3.41
3289 3891 0.817654 CATACTGCCTCGTCCTGTCA 59.182 55.000 0.00 0.00 0.00 3.58
3432 4040 1.739667 CGGTGCGGGACAGATGATA 59.260 57.895 1.14 0.00 0.00 2.15
3437 4045 3.251004 GGTGCGGGACAGATGATAATTTC 59.749 47.826 1.14 0.00 0.00 2.17
3463 4071 2.975489 ACTCTTCTCCTTCTCTTTGGCA 59.025 45.455 0.00 0.00 0.00 4.92
3531 4139 0.540923 GCTCAAGATGTCTCTGCCCT 59.459 55.000 0.00 0.00 0.00 5.19
3740 4348 9.063615 GTTTCTTCATTTAATCATATACGGGGT 57.936 33.333 0.00 0.00 0.00 4.95
3811 4443 0.171903 CAGCGGAAAGGAAATGCTGG 59.828 55.000 4.67 0.00 46.97 4.85
3817 4449 2.757314 GGAAAGGAAATGCTGGAAGAGG 59.243 50.000 0.00 0.00 34.07 3.69
3847 4479 2.161609 CGCTGACCCACAAATTTACTCC 59.838 50.000 0.00 0.00 0.00 3.85
3853 4485 2.099098 CCCACAAATTTACTCCGGCATC 59.901 50.000 0.00 0.00 0.00 3.91
3875 4507 2.845752 TACGCGGACTGGTTGGATGC 62.846 60.000 12.47 0.00 0.00 3.91
3876 4508 3.134127 GCGGACTGGTTGGATGCC 61.134 66.667 0.00 0.00 0.00 4.40
3878 4510 2.351276 GGACTGGTTGGATGCCGT 59.649 61.111 0.00 0.00 0.00 5.68
3880 4512 0.893727 GGACTGGTTGGATGCCGTTT 60.894 55.000 0.00 0.00 0.00 3.60
3883 4515 0.240945 CTGGTTGGATGCCGTTTGAC 59.759 55.000 0.00 0.00 0.00 3.18
3891 4523 0.396435 ATGCCGTTTGACAGAGGACA 59.604 50.000 0.00 0.00 0.00 4.02
3892 4524 0.179234 TGCCGTTTGACAGAGGACAA 59.821 50.000 0.00 0.00 0.00 3.18
3933 4565 3.386078 TGCAAGTAAAGGGCACATTGAAA 59.614 39.130 0.00 0.00 31.58 2.69
3934 4566 4.040217 TGCAAGTAAAGGGCACATTGAAAT 59.960 37.500 0.00 0.00 31.58 2.17
3935 4567 4.996758 GCAAGTAAAGGGCACATTGAAATT 59.003 37.500 0.00 0.00 0.00 1.82
3936 4568 5.120674 GCAAGTAAAGGGCACATTGAAATTC 59.879 40.000 0.00 0.00 0.00 2.17
3937 4569 6.222389 CAAGTAAAGGGCACATTGAAATTCA 58.778 36.000 0.00 0.00 0.00 2.57
3938 4570 6.418057 AGTAAAGGGCACATTGAAATTCAA 57.582 33.333 11.10 11.10 41.09 2.69
3939 4571 6.825610 AGTAAAGGGCACATTGAAATTCAAA 58.174 32.000 12.75 0.00 40.12 2.69
3940 4572 6.705825 AGTAAAGGGCACATTGAAATTCAAAC 59.294 34.615 12.75 2.52 40.12 2.93
3941 4573 4.686191 AGGGCACATTGAAATTCAAACA 57.314 36.364 12.75 0.00 40.12 2.83
3942 4574 4.379652 AGGGCACATTGAAATTCAAACAC 58.620 39.130 12.75 4.32 40.12 3.32
3943 4575 3.184178 GGGCACATTGAAATTCAAACACG 59.816 43.478 12.75 4.68 40.12 4.49
3944 4576 3.184178 GGCACATTGAAATTCAAACACGG 59.816 43.478 12.75 3.40 40.12 4.94
3945 4577 4.047822 GCACATTGAAATTCAAACACGGA 58.952 39.130 12.75 0.00 40.12 4.69
3946 4578 4.685628 GCACATTGAAATTCAAACACGGAT 59.314 37.500 12.75 0.00 40.12 4.18
3947 4579 5.164061 GCACATTGAAATTCAAACACGGATC 60.164 40.000 12.75 0.00 40.12 3.36
3948 4580 5.919707 CACATTGAAATTCAAACACGGATCA 59.080 36.000 12.75 0.00 40.12 2.92
3949 4581 6.088483 CACATTGAAATTCAAACACGGATCAG 59.912 38.462 12.75 0.00 40.12 2.90
3950 4582 4.159377 TGAAATTCAAACACGGATCAGC 57.841 40.909 0.00 0.00 0.00 4.26
3951 4583 3.567585 TGAAATTCAAACACGGATCAGCA 59.432 39.130 0.00 0.00 0.00 4.41
3952 4584 4.037327 TGAAATTCAAACACGGATCAGCAA 59.963 37.500 0.00 0.00 0.00 3.91
3953 4585 3.837213 ATTCAAACACGGATCAGCAAG 57.163 42.857 0.00 0.00 0.00 4.01
3954 4586 2.254546 TCAAACACGGATCAGCAAGT 57.745 45.000 0.00 0.00 0.00 3.16
3955 4587 3.394674 TCAAACACGGATCAGCAAGTA 57.605 42.857 0.00 0.00 0.00 2.24
3956 4588 3.734463 TCAAACACGGATCAGCAAGTAA 58.266 40.909 0.00 0.00 0.00 2.24
3957 4589 4.130857 TCAAACACGGATCAGCAAGTAAA 58.869 39.130 0.00 0.00 0.00 2.01
3958 4590 4.213270 TCAAACACGGATCAGCAAGTAAAG 59.787 41.667 0.00 0.00 0.00 1.85
3959 4591 2.699954 ACACGGATCAGCAAGTAAAGG 58.300 47.619 0.00 0.00 0.00 3.11
3960 4592 2.009774 CACGGATCAGCAAGTAAAGGG 58.990 52.381 0.00 0.00 0.00 3.95
3961 4593 1.017387 CGGATCAGCAAGTAAAGGGC 58.983 55.000 0.00 0.00 0.00 5.19
3962 4594 1.678728 CGGATCAGCAAGTAAAGGGCA 60.679 52.381 0.00 0.00 0.00 5.36
3963 4595 1.745653 GGATCAGCAAGTAAAGGGCAC 59.254 52.381 0.00 0.00 0.00 5.01
3964 4596 2.436417 GATCAGCAAGTAAAGGGCACA 58.564 47.619 0.00 0.00 0.00 4.57
3965 4597 2.584835 TCAGCAAGTAAAGGGCACAT 57.415 45.000 0.00 0.00 0.00 3.21
3966 4598 2.875296 TCAGCAAGTAAAGGGCACATT 58.125 42.857 0.00 0.00 0.00 2.71
3967 4599 2.557924 TCAGCAAGTAAAGGGCACATTG 59.442 45.455 0.00 0.00 0.00 2.82
3968 4600 2.557924 CAGCAAGTAAAGGGCACATTGA 59.442 45.455 0.00 0.00 0.00 2.57
3969 4601 3.005684 CAGCAAGTAAAGGGCACATTGAA 59.994 43.478 0.00 0.00 0.00 2.69
4000 4632 2.401583 AGTTTGATCCATAGCGTGCA 57.598 45.000 0.00 0.00 0.00 4.57
4001 4633 2.923121 AGTTTGATCCATAGCGTGCAT 58.077 42.857 0.00 0.00 0.00 3.96
4005 4637 0.038251 GATCCATAGCGTGCATCGGA 60.038 55.000 10.02 0.00 40.26 4.55
4034 4666 3.498397 GCTCGATCACAACCAAAAAGAGA 59.502 43.478 0.00 0.00 0.00 3.10
4049 4681 9.185680 ACCAAAAAGAGACAAGTATGTTTAAGT 57.814 29.630 0.00 0.00 40.74 2.24
4061 4693 8.921670 CAAGTATGTTTAAGTTTTTACATGCCC 58.078 33.333 0.00 0.00 35.18 5.36
4062 4694 8.184304 AGTATGTTTAAGTTTTTACATGCCCA 57.816 30.769 0.00 0.00 35.18 5.36
4069 4701 5.138125 AGTTTTTACATGCCCAATCACAG 57.862 39.130 0.00 0.00 0.00 3.66
4110 4746 0.319405 AAATTGAGTGCTGCCTTGGC 59.681 50.000 4.43 4.43 0.00 4.52
4156 4792 1.853319 CTCAAGGTGTCGTTGTCGC 59.147 57.895 2.92 0.00 36.96 5.19
4167 4803 1.281353 GTTGTCGCCGTGAATGCAA 59.719 52.632 0.00 0.00 0.00 4.08
4169 4805 2.123988 TTGTCGCCGTGAATGCAACC 62.124 55.000 0.00 0.00 0.00 3.77
4177 4813 1.734465 CGTGAATGCAACCTCCTTCTC 59.266 52.381 0.00 0.00 0.00 2.87
4191 4827 1.342474 CCTTCTCTGCCTCCTCTACCA 60.342 57.143 0.00 0.00 0.00 3.25
4192 4828 1.754226 CTTCTCTGCCTCCTCTACCAC 59.246 57.143 0.00 0.00 0.00 4.16
4201 4838 2.593026 CTCCTCTACCACCTCCATCTC 58.407 57.143 0.00 0.00 0.00 2.75
4205 4842 1.749334 CTACCACCTCCATCTCCGCC 61.749 65.000 0.00 0.00 0.00 6.13
4213 4850 2.801631 CCATCTCCGCCAGGTCCTC 61.802 68.421 0.00 0.00 39.05 3.71
4228 4865 1.476891 GTCCTCGTCTAGTTCCATGCA 59.523 52.381 0.00 0.00 0.00 3.96
4230 4867 2.362397 TCCTCGTCTAGTTCCATGCATC 59.638 50.000 0.00 0.00 0.00 3.91
4232 4869 2.021457 TCGTCTAGTTCCATGCATCGA 58.979 47.619 0.00 0.00 0.00 3.59
4233 4870 2.120232 CGTCTAGTTCCATGCATCGAC 58.880 52.381 0.00 0.00 0.00 4.20
4240 4877 2.279186 CATGCATCGACGGCGGTA 60.279 61.111 12.58 0.00 38.28 4.02
4253 4890 1.435577 GGCGGTAGCGAAGAAGAAAA 58.564 50.000 20.16 0.00 46.35 2.29
4275 4912 2.574369 TGAGAGAAAAGGGCGGGAATTA 59.426 45.455 0.00 0.00 0.00 1.40
4303 4941 1.153147 GGCGGGGCTAAAGAAGAGG 60.153 63.158 0.00 0.00 0.00 3.69
4315 4953 1.002857 AGAAGAGGGTGGGGGATTTG 58.997 55.000 0.00 0.00 0.00 2.32
4326 4964 0.179103 GGGGATTTGGCGCTGAAATG 60.179 55.000 18.57 0.00 0.00 2.32
4327 4965 0.817013 GGGATTTGGCGCTGAAATGA 59.183 50.000 18.57 0.00 0.00 2.57
4347 4985 2.180674 GCGGGAAGCTACAAAAGGG 58.819 57.895 0.00 0.00 44.04 3.95
4367 5005 1.586541 GGGCTCCGCTTTCCTTTTG 59.413 57.895 0.00 0.00 0.00 2.44
4370 5008 0.893727 GCTCCGCTTTCCTTTTGGGA 60.894 55.000 0.00 0.00 43.41 4.37
4374 5012 0.539669 CGCTTTCCTTTTGGGAGGGT 60.540 55.000 0.00 0.00 46.01 4.34
4377 5015 2.823152 GCTTTCCTTTTGGGAGGGTCAT 60.823 50.000 0.00 0.00 46.01 3.06
4386 5024 1.497309 GGGAGGGTCATGGGTGTCAA 61.497 60.000 0.00 0.00 0.00 3.18
4397 5035 2.040939 TGGGTGTCAAAGTCCGACTTA 58.959 47.619 14.19 0.00 37.47 2.24
4438 5077 1.142667 CAAAGCCCCCATGTTTGGTTT 59.857 47.619 0.00 0.00 41.91 3.27
4446 5085 3.118445 CCCCATGTTTGGTTTCAGTTTGT 60.118 43.478 0.00 0.00 41.91 2.83
4487 5126 2.806577 CTCGGCAGAGCGATACATG 58.193 57.895 0.00 0.00 37.73 3.21
4490 5130 4.766970 GCAGAGCGATACATGCCT 57.233 55.556 0.00 0.00 32.49 4.75
4505 5145 0.469705 TGCCTGTGTTGGATGGCTTT 60.470 50.000 0.00 0.00 45.11 3.51
4520 5160 0.749454 GCTTTCGGCATCCAGACCAT 60.749 55.000 0.00 0.00 41.35 3.55
4539 5179 0.251634 TGCGGTCTGGATGTATGCAA 59.748 50.000 0.00 0.00 0.00 4.08
4551 5191 1.271108 TGTATGCAAGCGGTTTGAGGA 60.271 47.619 8.86 0.00 39.21 3.71
4553 5193 1.098050 ATGCAAGCGGTTTGAGGATC 58.902 50.000 8.86 0.00 39.21 3.36
4567 5207 2.247437 GGATCGGCGTTGGAGATGC 61.247 63.158 6.85 0.00 39.65 3.91
4583 5223 5.719085 TGGAGATGCCCTAATTTGCTTAAAA 59.281 36.000 0.00 0.00 34.97 1.52
4593 5233 4.919677 ATTTGCTTAAAATTTTCGCCGG 57.080 36.364 6.72 0.00 34.72 6.13
4594 5234 1.704070 TGCTTAAAATTTTCGCCGGC 58.296 45.000 19.07 19.07 0.00 6.13
4595 5235 1.271102 TGCTTAAAATTTTCGCCGGCT 59.729 42.857 26.68 5.16 0.00 5.52
4596 5236 1.653609 GCTTAAAATTTTCGCCGGCTG 59.346 47.619 26.68 18.23 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.411114 ATCCAGTGCCTGATGCCGG 62.411 63.158 0.00 0.00 40.16 6.13
3 4 2.184830 CATCCAGTGCCTGATGCCG 61.185 63.158 4.00 0.00 40.16 5.69
4 5 1.826921 CCATCCAGTGCCTGATGCC 60.827 63.158 4.00 0.00 40.16 4.40
5 6 1.826921 CCCATCCAGTGCCTGATGC 60.827 63.158 4.00 0.00 41.77 3.91
6 7 0.256752 TTCCCATCCAGTGCCTGATG 59.743 55.000 4.00 1.94 32.44 3.07
7 8 1.002069 TTTCCCATCCAGTGCCTGAT 58.998 50.000 4.00 0.00 32.44 2.90
8 9 0.329261 CTTTCCCATCCAGTGCCTGA 59.671 55.000 4.00 0.00 32.44 3.86
9 10 0.038744 ACTTTCCCATCCAGTGCCTG 59.961 55.000 0.00 0.00 0.00 4.85
10 11 0.779997 AACTTTCCCATCCAGTGCCT 59.220 50.000 0.00 0.00 0.00 4.75
11 12 0.890683 CAACTTTCCCATCCAGTGCC 59.109 55.000 0.00 0.00 0.00 5.01
12 13 0.244721 GCAACTTTCCCATCCAGTGC 59.755 55.000 0.00 0.00 0.00 4.40
13 14 0.523072 CGCAACTTTCCCATCCAGTG 59.477 55.000 0.00 0.00 0.00 3.66
14 15 0.400213 TCGCAACTTTCCCATCCAGT 59.600 50.000 0.00 0.00 0.00 4.00
15 16 1.402968 CATCGCAACTTTCCCATCCAG 59.597 52.381 0.00 0.00 0.00 3.86
16 17 1.462616 CATCGCAACTTTCCCATCCA 58.537 50.000 0.00 0.00 0.00 3.41
17 18 0.101219 GCATCGCAACTTTCCCATCC 59.899 55.000 0.00 0.00 0.00 3.51
18 19 0.248215 CGCATCGCAACTTTCCCATC 60.248 55.000 0.00 0.00 0.00 3.51
19 20 0.676466 TCGCATCGCAACTTTCCCAT 60.676 50.000 0.00 0.00 0.00 4.00
20 21 1.302112 TCGCATCGCAACTTTCCCA 60.302 52.632 0.00 0.00 0.00 4.37
21 22 1.134694 GTCGCATCGCAACTTTCCC 59.865 57.895 0.00 0.00 0.00 3.97
22 23 0.237235 TTGTCGCATCGCAACTTTCC 59.763 50.000 0.00 0.00 0.00 3.13
23 24 2.031037 TTTGTCGCATCGCAACTTTC 57.969 45.000 0.00 0.00 0.00 2.62
24 25 2.116366 GTTTTGTCGCATCGCAACTTT 58.884 42.857 0.00 0.00 0.00 2.66
25 26 1.753956 GTTTTGTCGCATCGCAACTT 58.246 45.000 0.00 0.00 0.00 2.66
26 27 0.384230 CGTTTTGTCGCATCGCAACT 60.384 50.000 0.00 0.00 0.00 3.16
27 28 0.656205 ACGTTTTGTCGCATCGCAAC 60.656 50.000 0.00 0.00 0.00 4.17
28 29 0.028242 AACGTTTTGTCGCATCGCAA 59.972 45.000 0.00 0.00 0.00 4.85
29 30 0.383737 GAACGTTTTGTCGCATCGCA 60.384 50.000 0.46 0.00 0.00 5.10
30 31 0.383737 TGAACGTTTTGTCGCATCGC 60.384 50.000 0.46 0.00 0.00 4.58
31 32 1.305482 GTGAACGTTTTGTCGCATCG 58.695 50.000 0.46 0.00 0.00 3.84
32 33 1.305482 CGTGAACGTTTTGTCGCATC 58.695 50.000 0.46 0.00 34.11 3.91
33 34 3.431068 CGTGAACGTTTTGTCGCAT 57.569 47.368 0.46 0.00 34.11 4.73
34 35 4.957363 CGTGAACGTTTTGTCGCA 57.043 50.000 0.46 0.00 34.11 5.10
44 45 3.524759 GAGCGAGCGACGTGAACG 61.525 66.667 0.00 0.40 44.60 3.95
45 46 3.173240 GGAGCGAGCGACGTGAAC 61.173 66.667 0.00 0.00 44.60 3.18
46 47 3.666253 TGGAGCGAGCGACGTGAA 61.666 61.111 0.00 0.00 44.60 3.18
47 48 4.400109 GTGGAGCGAGCGACGTGA 62.400 66.667 0.00 0.00 44.60 4.35
51 52 2.600122 CTAGTGGTGGAGCGAGCGAC 62.600 65.000 0.00 0.00 0.00 5.19
52 53 2.360726 TAGTGGTGGAGCGAGCGA 60.361 61.111 0.00 0.00 0.00 4.93
53 54 2.103143 CTAGTGGTGGAGCGAGCG 59.897 66.667 0.00 0.00 0.00 5.03
54 55 1.139947 GACTAGTGGTGGAGCGAGC 59.860 63.158 0.00 0.00 0.00 5.03
55 56 1.306642 ACGACTAGTGGTGGAGCGAG 61.307 60.000 10.00 0.00 0.00 5.03
56 57 0.892358 AACGACTAGTGGTGGAGCGA 60.892 55.000 11.59 0.00 0.00 4.93
57 58 0.732880 CAACGACTAGTGGTGGAGCG 60.733 60.000 11.59 3.84 0.00 5.03
58 59 0.601558 TCAACGACTAGTGGTGGAGC 59.398 55.000 11.59 0.00 0.00 4.70
59 60 3.594603 AATCAACGACTAGTGGTGGAG 57.405 47.619 18.59 9.41 0.00 3.86
60 61 3.576982 AGAAATCAACGACTAGTGGTGGA 59.423 43.478 16.47 16.47 0.00 4.02
61 62 3.926616 AGAAATCAACGACTAGTGGTGG 58.073 45.455 11.59 8.74 0.00 4.61
62 63 5.924475 AAAGAAATCAACGACTAGTGGTG 57.076 39.130 11.59 7.57 0.00 4.17
63 64 6.053005 TCAAAAGAAATCAACGACTAGTGGT 58.947 36.000 4.48 4.48 0.00 4.16
64 65 6.202954 ACTCAAAAGAAATCAACGACTAGTGG 59.797 38.462 0.00 0.25 0.00 4.00
65 66 7.042725 TCACTCAAAAGAAATCAACGACTAGTG 60.043 37.037 0.00 0.00 0.00 2.74
66 67 6.984474 TCACTCAAAAGAAATCAACGACTAGT 59.016 34.615 0.00 0.00 0.00 2.57
67 68 7.408132 TCACTCAAAAGAAATCAACGACTAG 57.592 36.000 0.00 0.00 0.00 2.57
68 69 7.655732 TGATCACTCAAAAGAAATCAACGACTA 59.344 33.333 0.00 0.00 29.91 2.59
69 70 6.483307 TGATCACTCAAAAGAAATCAACGACT 59.517 34.615 0.00 0.00 29.91 4.18
70 71 6.575201 GTGATCACTCAAAAGAAATCAACGAC 59.425 38.462 18.83 0.00 32.63 4.34
71 72 6.483307 AGTGATCACTCAAAAGAAATCAACGA 59.517 34.615 22.89 0.00 36.92 3.85
72 73 6.662616 AGTGATCACTCAAAAGAAATCAACG 58.337 36.000 22.89 0.00 36.92 4.10
73 74 8.778358 ACTAGTGATCACTCAAAAGAAATCAAC 58.222 33.333 31.09 0.00 42.54 3.18
74 75 8.908786 ACTAGTGATCACTCAAAAGAAATCAA 57.091 30.769 31.09 8.67 42.54 2.57
75 76 8.150296 TGACTAGTGATCACTCAAAAGAAATCA 58.850 33.333 31.09 18.02 42.54 2.57
76 77 8.539770 TGACTAGTGATCACTCAAAAGAAATC 57.460 34.615 31.09 15.95 42.54 2.17
77 78 9.512588 AATGACTAGTGATCACTCAAAAGAAAT 57.487 29.630 31.09 17.10 42.54 2.17
78 79 8.777413 CAATGACTAGTGATCACTCAAAAGAAA 58.223 33.333 31.09 15.81 42.54 2.52
79 80 8.150296 TCAATGACTAGTGATCACTCAAAAGAA 58.850 33.333 31.09 16.11 42.54 2.52
80 81 7.670364 TCAATGACTAGTGATCACTCAAAAGA 58.330 34.615 31.09 17.66 42.54 2.52
81 82 7.895975 TCAATGACTAGTGATCACTCAAAAG 57.104 36.000 31.09 23.63 42.54 2.27
82 83 8.853077 AATCAATGACTAGTGATCACTCAAAA 57.147 30.769 31.09 16.20 40.44 2.44
83 84 8.724229 CAAATCAATGACTAGTGATCACTCAAA 58.276 33.333 31.09 13.83 40.44 2.69
84 85 7.335171 CCAAATCAATGACTAGTGATCACTCAA 59.665 37.037 31.09 14.58 40.44 3.02
85 86 6.820152 CCAAATCAATGACTAGTGATCACTCA 59.180 38.462 31.09 22.72 40.44 3.41
86 87 6.238320 GCCAAATCAATGACTAGTGATCACTC 60.238 42.308 31.09 17.90 40.44 3.51
87 88 5.587844 GCCAAATCAATGACTAGTGATCACT 59.412 40.000 30.11 30.11 40.44 3.41
88 89 5.503031 CGCCAAATCAATGACTAGTGATCAC 60.503 44.000 18.47 18.47 40.44 3.06
89 90 4.571984 CGCCAAATCAATGACTAGTGATCA 59.428 41.667 0.00 0.00 40.44 2.92
90 91 4.553547 GCGCCAAATCAATGACTAGTGATC 60.554 45.833 0.00 0.00 40.44 2.92
91 92 3.313526 GCGCCAAATCAATGACTAGTGAT 59.686 43.478 0.00 0.00 42.91 3.06
92 93 2.677836 GCGCCAAATCAATGACTAGTGA 59.322 45.455 0.00 0.00 35.12 3.41
93 94 2.223340 GGCGCCAAATCAATGACTAGTG 60.223 50.000 24.80 0.00 0.00 2.74
94 95 2.017049 GGCGCCAAATCAATGACTAGT 58.983 47.619 24.80 0.00 0.00 2.57
95 96 1.334869 GGGCGCCAAATCAATGACTAG 59.665 52.381 30.85 0.00 0.00 2.57
96 97 1.064758 AGGGCGCCAAATCAATGACTA 60.065 47.619 30.85 0.00 0.00 2.59
97 98 0.323725 AGGGCGCCAAATCAATGACT 60.324 50.000 30.85 8.91 0.00 3.41
98 99 0.532115 AAGGGCGCCAAATCAATGAC 59.468 50.000 30.85 6.30 0.00 3.06
99 100 0.817013 GAAGGGCGCCAAATCAATGA 59.183 50.000 30.85 0.00 0.00 2.57
100 101 0.819582 AGAAGGGCGCCAAATCAATG 59.180 50.000 30.85 0.00 0.00 2.82
101 102 1.478105 GAAGAAGGGCGCCAAATCAAT 59.522 47.619 30.85 14.94 0.00 2.57
102 103 0.887933 GAAGAAGGGCGCCAAATCAA 59.112 50.000 30.85 0.00 0.00 2.57
103 104 1.305219 CGAAGAAGGGCGCCAAATCA 61.305 55.000 30.85 0.00 0.00 2.57
104 105 1.429423 CGAAGAAGGGCGCCAAATC 59.571 57.895 30.85 21.90 0.00 2.17
105 106 2.700773 GCGAAGAAGGGCGCCAAAT 61.701 57.895 30.85 13.81 46.93 2.32
106 107 3.361977 GCGAAGAAGGGCGCCAAA 61.362 61.111 30.85 0.00 46.93 3.28
111 112 4.436998 ACGAGGCGAAGAAGGGCG 62.437 66.667 0.00 0.00 34.74 6.13
112 113 2.509561 GACGAGGCGAAGAAGGGC 60.510 66.667 0.00 0.00 0.00 5.19
113 114 2.184579 GGACGAGGCGAAGAAGGG 59.815 66.667 0.00 0.00 0.00 3.95
114 115 1.446272 GTGGACGAGGCGAAGAAGG 60.446 63.158 0.00 0.00 0.00 3.46
115 116 0.319555 TTGTGGACGAGGCGAAGAAG 60.320 55.000 0.00 0.00 0.00 2.85
116 117 0.105224 TTTGTGGACGAGGCGAAGAA 59.895 50.000 0.00 0.00 0.00 2.52
117 118 0.599204 GTTTGTGGACGAGGCGAAGA 60.599 55.000 0.00 0.00 0.00 2.87
118 119 1.566018 GGTTTGTGGACGAGGCGAAG 61.566 60.000 0.00 0.00 0.00 3.79
119 120 1.595929 GGTTTGTGGACGAGGCGAA 60.596 57.895 0.00 0.00 0.00 4.70
120 121 2.029964 GGTTTGTGGACGAGGCGA 59.970 61.111 0.00 0.00 0.00 5.54
121 122 1.566018 GAAGGTTTGTGGACGAGGCG 61.566 60.000 0.00 0.00 0.00 5.52
122 123 1.235281 GGAAGGTTTGTGGACGAGGC 61.235 60.000 0.00 0.00 0.00 4.70
123 124 0.605589 GGGAAGGTTTGTGGACGAGG 60.606 60.000 0.00 0.00 0.00 4.63
124 125 0.107831 TGGGAAGGTTTGTGGACGAG 59.892 55.000 0.00 0.00 0.00 4.18
125 126 0.768622 ATGGGAAGGTTTGTGGACGA 59.231 50.000 0.00 0.00 0.00 4.20
126 127 2.483014 TATGGGAAGGTTTGTGGACG 57.517 50.000 0.00 0.00 0.00 4.79
127 128 5.738619 AAAATATGGGAAGGTTTGTGGAC 57.261 39.130 0.00 0.00 0.00 4.02
153 154 9.567776 TGAATAAAGAAAGTATGTTTGGACTCA 57.432 29.630 0.00 0.00 0.00 3.41
156 157 9.959749 TGTTGAATAAAGAAAGTATGTTTGGAC 57.040 29.630 0.00 0.00 0.00 4.02
162 163 9.988350 CGCTATTGTTGAATAAAGAAAGTATGT 57.012 29.630 0.00 0.00 0.00 2.29
163 164 9.988350 ACGCTATTGTTGAATAAAGAAAGTATG 57.012 29.630 0.00 0.00 0.00 2.39
166 167 8.564574 TGAACGCTATTGTTGAATAAAGAAAGT 58.435 29.630 0.00 0.00 30.75 2.66
167 168 8.948853 TGAACGCTATTGTTGAATAAAGAAAG 57.051 30.769 0.00 0.00 30.75 2.62
168 169 9.340695 CATGAACGCTATTGTTGAATAAAGAAA 57.659 29.630 0.00 0.00 30.75 2.52
169 170 7.967854 CCATGAACGCTATTGTTGAATAAAGAA 59.032 33.333 0.00 0.00 30.75 2.52
170 171 7.415095 CCCATGAACGCTATTGTTGAATAAAGA 60.415 37.037 0.00 0.00 30.75 2.52
171 172 6.692681 CCCATGAACGCTATTGTTGAATAAAG 59.307 38.462 0.00 0.00 30.75 1.85
172 173 6.405286 CCCCATGAACGCTATTGTTGAATAAA 60.405 38.462 0.00 0.00 30.75 1.40
173 174 5.067153 CCCCATGAACGCTATTGTTGAATAA 59.933 40.000 0.00 0.00 30.75 1.40
174 175 4.578516 CCCCATGAACGCTATTGTTGAATA 59.421 41.667 0.00 0.00 30.75 1.75
175 176 3.381272 CCCCATGAACGCTATTGTTGAAT 59.619 43.478 0.00 0.00 30.75 2.57
176 177 2.752354 CCCCATGAACGCTATTGTTGAA 59.248 45.455 0.00 0.00 30.75 2.69
177 178 2.026729 TCCCCATGAACGCTATTGTTGA 60.027 45.455 0.00 0.00 30.75 3.18
178 179 2.364632 TCCCCATGAACGCTATTGTTG 58.635 47.619 0.00 0.00 30.75 3.33
179 180 2.799126 TCCCCATGAACGCTATTGTT 57.201 45.000 0.00 0.00 34.02 2.83
180 181 3.135712 TGTATCCCCATGAACGCTATTGT 59.864 43.478 0.00 0.00 0.00 2.71
181 182 3.738982 TGTATCCCCATGAACGCTATTG 58.261 45.455 0.00 0.00 0.00 1.90
182 183 4.134563 GTTGTATCCCCATGAACGCTATT 58.865 43.478 0.00 0.00 0.00 1.73
183 184 3.391296 AGTTGTATCCCCATGAACGCTAT 59.609 43.478 0.00 0.00 0.00 2.97
184 185 2.769663 AGTTGTATCCCCATGAACGCTA 59.230 45.455 0.00 0.00 0.00 4.26
185 186 1.559682 AGTTGTATCCCCATGAACGCT 59.440 47.619 0.00 0.00 0.00 5.07
186 187 1.940613 GAGTTGTATCCCCATGAACGC 59.059 52.381 0.00 0.00 0.00 4.84
187 188 3.260475 TGAGTTGTATCCCCATGAACG 57.740 47.619 0.00 0.00 0.00 3.95
188 189 5.975693 TTTTGAGTTGTATCCCCATGAAC 57.024 39.130 0.00 0.00 0.00 3.18
189 190 6.493166 AGATTTTGAGTTGTATCCCCATGAA 58.507 36.000 0.00 0.00 0.00 2.57
190 191 6.078456 AGATTTTGAGTTGTATCCCCATGA 57.922 37.500 0.00 0.00 0.00 3.07
191 192 5.008019 CGAGATTTTGAGTTGTATCCCCATG 59.992 44.000 0.00 0.00 0.00 3.66
192 193 5.126067 CGAGATTTTGAGTTGTATCCCCAT 58.874 41.667 0.00 0.00 0.00 4.00
193 194 4.019681 ACGAGATTTTGAGTTGTATCCCCA 60.020 41.667 0.00 0.00 0.00 4.96
194 195 4.332819 CACGAGATTTTGAGTTGTATCCCC 59.667 45.833 0.00 0.00 0.00 4.81
195 196 4.201822 GCACGAGATTTTGAGTTGTATCCC 60.202 45.833 0.00 0.00 0.00 3.85
196 197 4.391830 TGCACGAGATTTTGAGTTGTATCC 59.608 41.667 0.00 0.00 0.00 2.59
197 198 5.316770 GTGCACGAGATTTTGAGTTGTATC 58.683 41.667 0.00 0.00 0.00 2.24
198 199 4.143115 CGTGCACGAGATTTTGAGTTGTAT 60.143 41.667 34.93 0.00 43.02 2.29
199 200 3.183574 CGTGCACGAGATTTTGAGTTGTA 59.816 43.478 34.93 0.00 43.02 2.41
200 201 2.032894 CGTGCACGAGATTTTGAGTTGT 60.033 45.455 34.93 0.00 43.02 3.32
201 202 2.220824 TCGTGCACGAGATTTTGAGTTG 59.779 45.455 36.40 5.02 44.22 3.16
202 203 2.479837 TCGTGCACGAGATTTTGAGTT 58.520 42.857 36.40 0.00 44.22 3.01
203 204 2.148916 TCGTGCACGAGATTTTGAGT 57.851 45.000 36.40 0.00 44.22 3.41
293 294 1.278985 TGCTGGTCTCATCGGATTGTT 59.721 47.619 0.00 0.00 0.00 2.83
401 406 7.121907 TGTCGGAATGAATATGGAAAACATTCA 59.878 33.333 16.21 0.00 44.55 2.57
406 430 7.087639 TGTTTGTCGGAATGAATATGGAAAAC 58.912 34.615 0.00 0.00 0.00 2.43
449 473 2.093764 AGCTACTTCTGTGCATGGAGAC 60.094 50.000 5.16 0.00 0.00 3.36
484 510 1.473434 CCACCTCTGGGAATCGCTAAC 60.473 57.143 0.00 0.00 33.23 2.34
543 570 1.746470 TGCTCCAACATCATCAGCTG 58.254 50.000 7.63 7.63 0.00 4.24
566 593 0.897621 TTCATCGCAGAGCTTGAGGA 59.102 50.000 0.00 0.00 43.63 3.71
616 655 5.107220 ACGTCGGAAATCAATCTACAAACAC 60.107 40.000 0.00 0.00 0.00 3.32
653 692 2.031120 CATGGTTGTGACTTTGTGGGT 58.969 47.619 0.00 0.00 0.00 4.51
735 775 5.115480 GGCTGTTCACCATTTTCTCAAAAA 58.885 37.500 0.00 0.00 38.66 1.94
736 776 4.161189 TGGCTGTTCACCATTTTCTCAAAA 59.839 37.500 0.00 0.00 30.29 2.44
737 777 3.703556 TGGCTGTTCACCATTTTCTCAAA 59.296 39.130 0.00 0.00 30.29 2.69
738 778 3.295093 TGGCTGTTCACCATTTTCTCAA 58.705 40.909 0.00 0.00 30.29 3.02
739 779 2.942804 TGGCTGTTCACCATTTTCTCA 58.057 42.857 0.00 0.00 30.29 3.27
740 780 5.183904 AGTTATGGCTGTTCACCATTTTCTC 59.816 40.000 0.00 0.00 45.86 2.87
741 781 5.079643 AGTTATGGCTGTTCACCATTTTCT 58.920 37.500 0.00 0.00 45.86 2.52
742 782 5.391312 AGTTATGGCTGTTCACCATTTTC 57.609 39.130 0.00 0.00 45.86 2.29
743 783 5.806654 AAGTTATGGCTGTTCACCATTTT 57.193 34.783 0.00 0.00 45.86 1.82
744 784 5.540911 CAAAGTTATGGCTGTTCACCATTT 58.459 37.500 0.00 0.00 45.86 2.32
745 785 4.561326 GCAAAGTTATGGCTGTTCACCATT 60.561 41.667 0.00 0.00 45.86 3.16
747 787 2.295909 GCAAAGTTATGGCTGTTCACCA 59.704 45.455 0.00 0.00 42.61 4.17
748 788 2.295909 TGCAAAGTTATGGCTGTTCACC 59.704 45.455 0.00 0.00 0.00 4.02
749 789 3.641437 TGCAAAGTTATGGCTGTTCAC 57.359 42.857 0.00 0.00 0.00 3.18
750 790 4.081406 AGATGCAAAGTTATGGCTGTTCA 58.919 39.130 0.00 0.00 0.00 3.18
751 791 4.708726 AGATGCAAAGTTATGGCTGTTC 57.291 40.909 0.00 0.00 0.00 3.18
752 792 4.768968 AGAAGATGCAAAGTTATGGCTGTT 59.231 37.500 0.00 0.00 0.00 3.16
753 793 4.338879 AGAAGATGCAAAGTTATGGCTGT 58.661 39.130 0.00 0.00 0.00 4.40
754 794 4.201990 GGAGAAGATGCAAAGTTATGGCTG 60.202 45.833 0.00 0.00 0.00 4.85
755 795 3.950395 GGAGAAGATGCAAAGTTATGGCT 59.050 43.478 0.00 0.00 0.00 4.75
756 796 3.950395 AGGAGAAGATGCAAAGTTATGGC 59.050 43.478 0.00 0.00 0.00 4.40
757 797 6.521151 AAAGGAGAAGATGCAAAGTTATGG 57.479 37.500 0.00 0.00 0.00 2.74
758 798 7.064609 TCGTAAAGGAGAAGATGCAAAGTTATG 59.935 37.037 0.00 0.00 0.00 1.90
759 799 7.064728 GTCGTAAAGGAGAAGATGCAAAGTTAT 59.935 37.037 0.00 0.00 0.00 1.89
760 800 6.367969 GTCGTAAAGGAGAAGATGCAAAGTTA 59.632 38.462 0.00 0.00 0.00 2.24
761 801 5.179555 GTCGTAAAGGAGAAGATGCAAAGTT 59.820 40.000 0.00 0.00 0.00 2.66
762 802 4.691216 GTCGTAAAGGAGAAGATGCAAAGT 59.309 41.667 0.00 0.00 0.00 2.66
763 803 4.201628 CGTCGTAAAGGAGAAGATGCAAAG 60.202 45.833 0.00 0.00 0.00 2.77
764 804 3.678072 CGTCGTAAAGGAGAAGATGCAAA 59.322 43.478 0.00 0.00 0.00 3.68
765 805 3.250744 CGTCGTAAAGGAGAAGATGCAA 58.749 45.455 0.00 0.00 0.00 4.08
766 806 2.876091 CGTCGTAAAGGAGAAGATGCA 58.124 47.619 0.00 0.00 0.00 3.96
767 807 1.588861 GCGTCGTAAAGGAGAAGATGC 59.411 52.381 0.00 0.00 36.81 3.91
768 808 3.152261 AGCGTCGTAAAGGAGAAGATG 57.848 47.619 0.00 0.00 0.00 2.90
769 809 3.066481 GGTAGCGTCGTAAAGGAGAAGAT 59.934 47.826 0.00 0.00 0.00 2.40
770 810 2.421424 GGTAGCGTCGTAAAGGAGAAGA 59.579 50.000 0.00 0.00 0.00 2.87
771 811 2.163010 TGGTAGCGTCGTAAAGGAGAAG 59.837 50.000 0.00 0.00 0.00 2.85
772 812 2.161855 TGGTAGCGTCGTAAAGGAGAA 58.838 47.619 0.00 0.00 0.00 2.87
773 813 1.825090 TGGTAGCGTCGTAAAGGAGA 58.175 50.000 0.00 0.00 0.00 3.71
774 814 2.865343 ATGGTAGCGTCGTAAAGGAG 57.135 50.000 0.00 0.00 0.00 3.69
775 815 3.016031 TGTATGGTAGCGTCGTAAAGGA 58.984 45.455 0.00 0.00 0.00 3.36
776 816 3.425577 TGTATGGTAGCGTCGTAAAGG 57.574 47.619 0.00 0.00 0.00 3.11
777 817 4.443394 GGAATGTATGGTAGCGTCGTAAAG 59.557 45.833 0.00 0.00 0.00 1.85
778 818 4.098349 AGGAATGTATGGTAGCGTCGTAAA 59.902 41.667 0.00 0.00 0.00 2.01
783 823 2.607282 CGGAGGAATGTATGGTAGCGTC 60.607 54.545 0.00 0.00 0.00 5.19
785 825 2.065993 CGGAGGAATGTATGGTAGCG 57.934 55.000 0.00 0.00 0.00 4.26
804 846 1.401905 CAAACCGCTATTCAAGGCTCC 59.598 52.381 0.00 0.00 0.00 4.70
853 895 2.584608 CGTGTCTGGGGGCCTAAG 59.415 66.667 0.84 0.97 0.00 2.18
862 904 2.551912 GCAAACCCACCGTGTCTGG 61.552 63.158 0.00 0.00 0.00 3.86
870 912 1.678101 GCAGATAGATGCAAACCCACC 59.322 52.381 0.00 0.00 45.77 4.61
872 914 1.667236 CGCAGATAGATGCAAACCCA 58.333 50.000 0.00 0.00 46.87 4.51
873 915 0.947244 CCGCAGATAGATGCAAACCC 59.053 55.000 0.00 0.00 46.87 4.11
874 916 0.308993 GCCGCAGATAGATGCAAACC 59.691 55.000 0.00 0.00 46.87 3.27
875 917 0.308993 GGCCGCAGATAGATGCAAAC 59.691 55.000 0.00 0.00 46.87 2.93
876 918 1.159713 CGGCCGCAGATAGATGCAAA 61.160 55.000 14.67 0.00 46.87 3.68
877 919 1.595109 CGGCCGCAGATAGATGCAA 60.595 57.895 14.67 0.00 46.87 4.08
878 920 1.460273 TACGGCCGCAGATAGATGCA 61.460 55.000 28.58 0.00 46.87 3.96
879 921 0.108615 ATACGGCCGCAGATAGATGC 60.109 55.000 28.58 0.00 42.95 3.91
880 922 1.995484 CAATACGGCCGCAGATAGATG 59.005 52.381 28.58 9.62 0.00 2.90
881 923 1.066858 CCAATACGGCCGCAGATAGAT 60.067 52.381 28.58 5.26 0.00 1.98
918 960 3.935872 GCTGCGAACACACGTGCA 61.936 61.111 17.22 5.55 36.00 4.57
932 974 4.137872 CCCATTTGCGGCCTGCTG 62.138 66.667 18.14 9.76 46.63 4.41
949 991 2.652496 GAGTGGTCGAGCGATCGC 60.652 66.667 32.15 32.15 42.33 4.58
1021 1064 0.820871 CTTCACTCCTTCCTCCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
1024 1067 0.912006 GGGCTTCACTCCTTCCTCCT 60.912 60.000 0.00 0.00 0.00 3.69
1765 2062 4.161565 AGCTGTTCGGGAGTGTATTCATTA 59.838 41.667 0.00 0.00 0.00 1.90
1892 2189 4.361429 AGCCTGGCCCCTCTCCTT 62.361 66.667 16.57 0.00 0.00 3.36
1996 2293 1.819632 GGCGGGATTACCAGTGCTG 60.820 63.158 0.00 0.00 40.22 4.41
1998 2295 2.516225 GGGCGGGATTACCAGTGC 60.516 66.667 0.00 0.00 40.22 4.40
1999 2296 1.153168 CTGGGCGGGATTACCAGTG 60.153 63.158 0.00 0.00 45.21 3.66
2064 2362 3.798337 CACAAGTTTGTCAGTTCCATTGC 59.202 43.478 0.00 0.00 39.91 3.56
2080 2378 5.106948 CGATCAAGAACAATACAGCACAAGT 60.107 40.000 0.00 0.00 0.00 3.16
2231 2529 4.010349 CCTCCCACCAACAGAAAATAGAC 58.990 47.826 0.00 0.00 0.00 2.59
2271 2569 5.011431 AGTCAATCACACTCTCACATCAGAA 59.989 40.000 0.00 0.00 0.00 3.02
2276 2574 4.879197 TCAGTCAATCACACTCTCACAT 57.121 40.909 0.00 0.00 0.00 3.21
2278 2576 4.814147 TCATCAGTCAATCACACTCTCAC 58.186 43.478 0.00 0.00 0.00 3.51
2287 2585 4.751600 GCACCGATAATCATCAGTCAATCA 59.248 41.667 0.00 0.00 0.00 2.57
2338 2636 1.256812 TCTCTTCGCCTGACATGTGA 58.743 50.000 1.15 0.00 0.00 3.58
2383 2681 3.539604 GGACATCTTGAACTCATCCCTG 58.460 50.000 0.00 0.00 0.00 4.45
2477 2793 5.835113 AACACTACATTTGCAAGTCAGTT 57.165 34.783 0.00 0.00 0.00 3.16
3116 3718 1.598701 GCAATTCCAGAGGTGGTGCC 61.599 60.000 0.00 0.00 45.28 5.01
3143 3745 2.162681 GGGGTCACTTGATCAAACTGG 58.837 52.381 9.88 0.06 0.00 4.00
3271 3873 1.557099 TTGACAGGACGAGGCAGTAT 58.443 50.000 0.00 0.00 0.00 2.12
3326 3928 0.606604 TGGGTCTTCTTGTAGTCGGC 59.393 55.000 0.00 0.00 0.00 5.54
3415 4023 2.550830 ATTATCATCTGTCCCGCACC 57.449 50.000 0.00 0.00 0.00 5.01
3417 4025 3.476552 GGAAATTATCATCTGTCCCGCA 58.523 45.455 0.00 0.00 0.00 5.69
3418 4026 2.814336 GGGAAATTATCATCTGTCCCGC 59.186 50.000 0.00 0.00 35.66 6.13
3432 4040 4.352298 AGAAGGAGAAGAGTGTGGGAAATT 59.648 41.667 0.00 0.00 0.00 1.82
3437 4045 2.534990 AGAGAAGGAGAAGAGTGTGGG 58.465 52.381 0.00 0.00 0.00 4.61
3502 4110 3.036429 ATCTTGAGCCTCGGTGCCC 62.036 63.158 0.00 0.00 0.00 5.36
3531 4139 0.395586 AACACTGCAAAGACCTGGCA 60.396 50.000 0.00 0.00 35.96 4.92
3811 4443 1.478510 TCAGCGTTGGAGATCCTCTTC 59.521 52.381 0.00 0.00 36.82 2.87
3817 4449 0.741221 GTGGGTCAGCGTTGGAGATC 60.741 60.000 0.00 0.00 0.00 2.75
3831 4463 1.202952 TGCCGGAGTAAATTTGTGGGT 60.203 47.619 5.05 0.00 0.00 4.51
3862 4494 0.240945 CAAACGGCATCCAACCAGTC 59.759 55.000 0.00 0.00 0.00 3.51
3875 4507 2.544267 GACTTTGTCCTCTGTCAAACGG 59.456 50.000 0.00 0.00 31.59 4.44
3876 4508 3.861569 GACTTTGTCCTCTGTCAAACG 57.138 47.619 0.00 0.00 31.59 3.60
3910 4542 2.961741 TCAATGTGCCCTTTACTTGCAA 59.038 40.909 0.00 0.00 36.65 4.08
3911 4543 2.591923 TCAATGTGCCCTTTACTTGCA 58.408 42.857 0.00 0.00 0.00 4.08
3933 4565 3.149196 ACTTGCTGATCCGTGTTTGAAT 58.851 40.909 0.00 0.00 0.00 2.57
3934 4566 2.571212 ACTTGCTGATCCGTGTTTGAA 58.429 42.857 0.00 0.00 0.00 2.69
3935 4567 2.254546 ACTTGCTGATCCGTGTTTGA 57.745 45.000 0.00 0.00 0.00 2.69
3936 4568 4.466828 CTTTACTTGCTGATCCGTGTTTG 58.533 43.478 0.00 0.00 0.00 2.93
3937 4569 3.502211 CCTTTACTTGCTGATCCGTGTTT 59.498 43.478 0.00 0.00 0.00 2.83
3938 4570 3.074412 CCTTTACTTGCTGATCCGTGTT 58.926 45.455 0.00 0.00 0.00 3.32
3939 4571 2.615493 CCCTTTACTTGCTGATCCGTGT 60.615 50.000 0.00 0.00 0.00 4.49
3940 4572 2.009774 CCCTTTACTTGCTGATCCGTG 58.990 52.381 0.00 0.00 0.00 4.94
3941 4573 1.679032 GCCCTTTACTTGCTGATCCGT 60.679 52.381 0.00 0.00 0.00 4.69
3942 4574 1.017387 GCCCTTTACTTGCTGATCCG 58.983 55.000 0.00 0.00 0.00 4.18
3943 4575 1.745653 GTGCCCTTTACTTGCTGATCC 59.254 52.381 0.00 0.00 0.00 3.36
3944 4576 2.436417 TGTGCCCTTTACTTGCTGATC 58.564 47.619 0.00 0.00 0.00 2.92
3945 4577 2.584835 TGTGCCCTTTACTTGCTGAT 57.415 45.000 0.00 0.00 0.00 2.90
3946 4578 2.557924 CAATGTGCCCTTTACTTGCTGA 59.442 45.455 0.00 0.00 0.00 4.26
3947 4579 2.557924 TCAATGTGCCCTTTACTTGCTG 59.442 45.455 0.00 0.00 0.00 4.41
3948 4580 2.875296 TCAATGTGCCCTTTACTTGCT 58.125 42.857 0.00 0.00 0.00 3.91
3949 4581 3.658757 TTCAATGTGCCCTTTACTTGC 57.341 42.857 0.00 0.00 0.00 4.01
3950 4582 6.222389 TGAATTTCAATGTGCCCTTTACTTG 58.778 36.000 0.00 0.00 0.00 3.16
3951 4583 6.418057 TGAATTTCAATGTGCCCTTTACTT 57.582 33.333 0.00 0.00 0.00 2.24
3952 4584 6.418057 TTGAATTTCAATGTGCCCTTTACT 57.582 33.333 7.74 0.00 30.26 2.24
3953 4585 7.671495 ATTTGAATTTCAATGTGCCCTTTAC 57.329 32.000 12.39 0.00 36.11 2.01
3954 4586 8.370940 TGTATTTGAATTTCAATGTGCCCTTTA 58.629 29.630 12.39 0.00 36.11 1.85
3955 4587 7.222872 TGTATTTGAATTTCAATGTGCCCTTT 58.777 30.769 12.39 0.00 36.11 3.11
3956 4588 6.767456 TGTATTTGAATTTCAATGTGCCCTT 58.233 32.000 12.39 0.00 36.11 3.95
3957 4589 6.357579 TGTATTTGAATTTCAATGTGCCCT 57.642 33.333 12.39 0.00 36.11 5.19
3958 4590 6.650390 ACTTGTATTTGAATTTCAATGTGCCC 59.350 34.615 12.39 0.31 36.11 5.36
3959 4591 7.656707 ACTTGTATTTGAATTTCAATGTGCC 57.343 32.000 12.39 1.50 36.11 5.01
3960 4592 9.372541 CAAACTTGTATTTGAATTTCAATGTGC 57.627 29.630 12.39 8.79 41.28 4.57
3993 4625 1.144716 ATGTGATCCGATGCACGCT 59.855 52.632 0.00 0.00 41.07 5.07
4000 4632 1.615392 TGATCGAGCATGTGATCCGAT 59.385 47.619 0.00 12.85 40.19 4.18
4001 4633 1.032014 TGATCGAGCATGTGATCCGA 58.968 50.000 0.00 9.61 40.19 4.55
4005 4637 2.283298 GGTTGTGATCGAGCATGTGAT 58.717 47.619 6.66 0.00 0.00 3.06
4034 4666 9.471084 GGCATGTAAAAACTTAAACATACTTGT 57.529 29.630 0.00 0.00 37.82 3.16
4049 4681 5.538053 TCTTCTGTGATTGGGCATGTAAAAA 59.462 36.000 0.00 0.00 0.00 1.94
4061 4693 6.019237 CACGGACTGATATTCTTCTGTGATTG 60.019 42.308 12.01 0.00 44.76 2.67
4062 4694 6.045318 CACGGACTGATATTCTTCTGTGATT 58.955 40.000 12.01 0.00 44.76 2.57
4069 4701 5.545658 TTTTGCACGGACTGATATTCTTC 57.454 39.130 0.00 0.00 0.00 2.87
4094 4730 2.979676 CGCCAAGGCAGCACTCAA 60.980 61.111 12.19 0.00 42.06 3.02
4110 4746 3.564027 GCTCGAATTGCCGGTCCG 61.564 66.667 3.60 3.60 0.00 4.79
4136 4772 0.874175 CGACAACGACACCTTGAGCA 60.874 55.000 0.00 0.00 42.66 4.26
4156 4792 0.804989 GAAGGAGGTTGCATTCACGG 59.195 55.000 0.00 0.00 0.00 4.94
4167 4803 0.325203 GAGGAGGCAGAGAAGGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
4169 4805 2.306847 GTAGAGGAGGCAGAGAAGGAG 58.693 57.143 0.00 0.00 0.00 3.69
4177 4813 1.045911 GGAGGTGGTAGAGGAGGCAG 61.046 65.000 0.00 0.00 0.00 4.85
4191 4827 2.765807 CCTGGCGGAGATGGAGGT 60.766 66.667 0.00 0.00 0.00 3.85
4192 4828 2.765807 ACCTGGCGGAGATGGAGG 60.766 66.667 0.00 0.00 0.00 4.30
4201 4838 2.439701 TAGACGAGGACCTGGCGG 60.440 66.667 0.00 0.00 0.00 6.13
4205 4842 1.835494 TGGAACTAGACGAGGACCTG 58.165 55.000 0.00 0.00 0.00 4.00
4213 4850 2.120232 GTCGATGCATGGAACTAGACG 58.880 52.381 13.40 2.61 0.00 4.18
4228 4865 3.465296 CTTCGCTACCGCCGTCGAT 62.465 63.158 0.00 0.00 38.10 3.59
4230 4867 3.672255 TTCTTCGCTACCGCCGTCG 62.672 63.158 0.00 0.00 0.00 5.12
4232 4869 1.870055 TTCTTCTTCGCTACCGCCGT 61.870 55.000 0.00 0.00 0.00 5.68
4233 4870 0.734942 TTTCTTCTTCGCTACCGCCG 60.735 55.000 0.00 0.00 0.00 6.46
4239 4876 7.118390 CCTTTTCTCTCATTTTCTTCTTCGCTA 59.882 37.037 0.00 0.00 0.00 4.26
4240 4877 6.072783 CCTTTTCTCTCATTTTCTTCTTCGCT 60.073 38.462 0.00 0.00 0.00 4.93
4253 4890 0.991920 TTCCCGCCCTTTTCTCTCAT 59.008 50.000 0.00 0.00 0.00 2.90
4291 4929 0.256177 CCCCCACCCTCTTCTTTAGC 59.744 60.000 0.00 0.00 0.00 3.09
4293 4931 2.680439 ATCCCCCACCCTCTTCTTTA 57.320 50.000 0.00 0.00 0.00 1.85
4303 4941 4.759205 AGCGCCAAATCCCCCACC 62.759 66.667 2.29 0.00 0.00 4.61
4326 4964 1.401905 CCTTTTGTAGCTTCCCGCATC 59.598 52.381 0.00 0.00 42.61 3.91
4327 4965 1.463674 CCTTTTGTAGCTTCCCGCAT 58.536 50.000 0.00 0.00 42.61 4.73
4367 5005 1.497309 TTGACACCCATGACCCTCCC 61.497 60.000 0.00 0.00 0.00 4.30
4370 5008 1.073923 GACTTTGACACCCATGACCCT 59.926 52.381 0.00 0.00 0.00 4.34
4374 5012 1.052617 TCGGACTTTGACACCCATGA 58.947 50.000 0.00 0.00 0.00 3.07
4377 5015 0.834612 AAGTCGGACTTTGACACCCA 59.165 50.000 17.38 0.00 34.11 4.51
4386 5024 2.483491 GACACGAGACTAAGTCGGACTT 59.517 50.000 25.15 25.15 41.88 3.01
4397 5035 0.609681 GGGAGTCCAGACACGAGACT 60.610 60.000 12.30 0.00 43.42 3.24
4475 5114 0.826715 ACACAGGCATGTATCGCTCT 59.173 50.000 2.51 0.00 37.65 4.09
4478 5117 0.378257 CCAACACAGGCATGTATCGC 59.622 55.000 2.51 0.00 37.65 4.58
4490 5130 1.523154 GCCGAAAGCCATCCAACACA 61.523 55.000 0.00 0.00 34.35 3.72
4505 5145 2.190313 GCATGGTCTGGATGCCGA 59.810 61.111 0.00 0.00 40.37 5.54
4520 5160 0.251634 TTGCATACATCCAGACCGCA 59.748 50.000 0.00 0.00 0.00 5.69
4526 5166 1.382522 AACCGCTTGCATACATCCAG 58.617 50.000 0.00 0.00 0.00 3.86
4527 5167 1.472082 CAAACCGCTTGCATACATCCA 59.528 47.619 0.00 0.00 0.00 3.41
4539 5179 2.125106 GCCGATCCTCAAACCGCT 60.125 61.111 0.00 0.00 0.00 5.52
4551 5191 2.203070 GGCATCTCCAACGCCGAT 60.203 61.111 0.00 0.00 35.79 4.18
4567 5207 6.454981 CGGCGAAAATTTTAAGCAAATTAGGG 60.455 38.462 23.60 6.60 43.20 3.53
4569 5209 6.465978 CCGGCGAAAATTTTAAGCAAATTAG 58.534 36.000 23.60 12.12 43.20 1.73
4571 5211 4.377943 GCCGGCGAAAATTTTAAGCAAATT 60.378 37.500 23.60 0.00 45.50 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.