Multiple sequence alignment - TraesCS6A01G368800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G368800 chr6A 100.000 3285 0 0 393 3677 594756382 594753098 0.000000e+00 6067.0
1 TraesCS6A01G368800 chr6A 100.000 97 0 0 1 97 594756774 594756678 2.920000e-41 180.0
2 TraesCS6A01G368800 chr6D 92.697 1424 66 20 973 2389 448716837 448715445 0.000000e+00 2019.0
3 TraesCS6A01G368800 chr6D 87.768 466 34 15 394 848 448717752 448717299 1.170000e-144 523.0
4 TraesCS6A01G368800 chr6D 86.935 398 21 13 3292 3677 448713858 448713480 5.680000e-113 418.0
5 TraesCS6A01G368800 chr6D 88.498 313 20 7 2456 2763 448715423 448715122 7.500000e-97 364.0
6 TraesCS6A01G368800 chr6D 91.852 135 9 2 1372 1506 395216677 395216809 1.740000e-43 187.0
7 TraesCS6A01G368800 chr6D 94.845 97 4 1 1 97 448773723 448773628 2.290000e-32 150.0
8 TraesCS6A01G368800 chr6D 88.235 51 5 1 2410 2460 448715458 448715409 3.970000e-05 60.2
9 TraesCS6A01G368800 chr6B 89.945 1462 82 42 940 2374 680314204 680312781 0.000000e+00 1825.0
10 TraesCS6A01G368800 chr6B 82.974 417 27 19 3284 3677 680311286 680310891 1.640000e-88 337.0
11 TraesCS6A01G368800 chr6B 89.881 168 17 0 2451 2618 680312763 680312596 2.220000e-52 217.0
12 TraesCS6A01G368800 chr6B 89.286 168 15 3 698 864 680314793 680314628 1.340000e-49 207.0
13 TraesCS6A01G368800 chr6B 90.196 51 5 0 2716 2766 680312526 680312476 2.370000e-07 67.6
14 TraesCS6A01G368800 chr7A 87.123 497 37 9 1057 1541 69934821 69934340 4.180000e-149 538.0
15 TraesCS6A01G368800 chr7A 80.597 201 14 10 1057 1257 66695191 66695366 8.290000e-27 132.0
16 TraesCS6A01G368800 chr7A 91.667 60 4 1 1899 1958 9366500 9366558 8.460000e-12 82.4
17 TraesCS6A01G368800 chr7D 94.294 333 19 0 1148 1480 42242644 42242312 9.110000e-141 510.0
18 TraesCS6A01G368800 chr7D 93.636 110 5 2 1397 1506 27456464 27456357 2.940000e-36 163.0
19 TraesCS6A01G368800 chr7D 94.118 102 5 1 1210 1310 27466230 27466129 1.770000e-33 154.0
20 TraesCS6A01G368800 chr3B 89.459 351 28 6 1157 1506 697139922 697139580 5.640000e-118 435.0
21 TraesCS6A01G368800 chr3B 80.402 199 25 10 1057 1242 299745455 299745258 4.950000e-29 139.0
22 TraesCS6A01G368800 chr5B 90.090 333 26 3 1157 1488 429102743 429103069 3.390000e-115 425.0
23 TraesCS6A01G368800 chr3A 91.919 99 8 0 1159 1257 555116054 555115956 4.950000e-29 139.0
24 TraesCS6A01G368800 chr2A 93.590 78 5 0 1057 1134 675087152 675087075 2.320000e-22 117.0
25 TraesCS6A01G368800 chr1A 92.308 78 6 0 1057 1134 540391357 540391434 1.080000e-20 111.0
26 TraesCS6A01G368800 chr1A 88.889 90 10 0 1168 1257 540391503 540391592 1.080000e-20 111.0
27 TraesCS6A01G368800 chr3D 91.026 78 7 0 1057 1134 466799517 466799594 5.020000e-19 106.0
28 TraesCS6A01G368800 chr5D 89.744 78 8 0 1057 1134 484842239 484842316 2.340000e-17 100.0
29 TraesCS6A01G368800 chr4A 91.667 60 4 1 1899 1958 617952889 617952947 8.460000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G368800 chr6A 594753098 594756774 3676 True 3123.50 6067 100.0000 1 3677 2 chr6A.!!$R1 3676
1 TraesCS6A01G368800 chr6D 448713480 448717752 4272 True 676.84 2019 88.8266 394 3677 5 chr6D.!!$R2 3283
2 TraesCS6A01G368800 chr6B 680310891 680314793 3902 True 530.72 1825 88.4564 698 3677 5 chr6B.!!$R1 2979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 896 0.037697 GTCACGTACAGGCACATCCA 60.038 55.0 0.0 0.0 37.29 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2791 3363 0.03467 GCATCCCCAGCTCTTCTTGT 60.035 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.590234 AATCCACCTAATTTGAGTTGTTCC 57.410 37.500 0.00 0.00 0.00 3.62
25 26 4.069304 TCCACCTAATTTGAGTTGTTCCG 58.931 43.478 0.00 0.00 0.00 4.30
26 27 4.069304 CCACCTAATTTGAGTTGTTCCGA 58.931 43.478 0.00 0.00 0.00 4.55
27 28 4.083484 CCACCTAATTTGAGTTGTTCCGAC 60.083 45.833 0.00 0.00 0.00 4.79
28 29 4.755123 CACCTAATTTGAGTTGTTCCGACT 59.245 41.667 0.00 0.00 0.00 4.18
29 30 5.929992 CACCTAATTTGAGTTGTTCCGACTA 59.070 40.000 0.00 0.00 0.00 2.59
30 31 6.425721 CACCTAATTTGAGTTGTTCCGACTAA 59.574 38.462 0.00 0.00 0.00 2.24
31 32 6.426025 ACCTAATTTGAGTTGTTCCGACTAAC 59.574 38.462 0.00 0.00 0.00 2.34
32 33 4.985044 ATTTGAGTTGTTCCGACTAACG 57.015 40.909 0.00 0.00 42.18 3.18
33 34 3.441496 TTGAGTTGTTCCGACTAACGT 57.559 42.857 0.00 0.00 40.78 3.99
34 35 3.441496 TGAGTTGTTCCGACTAACGTT 57.559 42.857 5.88 5.88 40.78 3.99
35 36 4.566545 TGAGTTGTTCCGACTAACGTTA 57.433 40.909 7.94 7.94 40.78 3.18
36 37 5.125100 TGAGTTGTTCCGACTAACGTTAT 57.875 39.130 8.76 0.00 40.78 1.89
37 38 5.531634 TGAGTTGTTCCGACTAACGTTATT 58.468 37.500 8.76 2.68 40.78 1.40
38 39 5.403166 TGAGTTGTTCCGACTAACGTTATTG 59.597 40.000 8.76 0.46 40.78 1.90
39 40 4.151157 AGTTGTTCCGACTAACGTTATTGC 59.849 41.667 8.76 0.62 40.78 3.56
40 41 2.995258 TGTTCCGACTAACGTTATTGCC 59.005 45.455 8.76 0.00 40.78 4.52
41 42 3.256558 GTTCCGACTAACGTTATTGCCT 58.743 45.455 8.76 0.00 40.78 4.75
42 43 4.082300 TGTTCCGACTAACGTTATTGCCTA 60.082 41.667 8.76 0.00 40.78 3.93
43 44 4.717233 TCCGACTAACGTTATTGCCTAA 57.283 40.909 8.76 0.00 40.78 2.69
44 45 5.266733 TCCGACTAACGTTATTGCCTAAT 57.733 39.130 8.76 0.00 40.78 1.73
45 46 5.663456 TCCGACTAACGTTATTGCCTAATT 58.337 37.500 8.76 0.00 40.78 1.40
46 47 6.108015 TCCGACTAACGTTATTGCCTAATTT 58.892 36.000 8.76 0.00 40.78 1.82
47 48 6.036300 TCCGACTAACGTTATTGCCTAATTTG 59.964 38.462 8.76 0.00 40.78 2.32
48 49 6.036300 CCGACTAACGTTATTGCCTAATTTGA 59.964 38.462 8.76 0.00 40.78 2.69
49 50 7.117454 CGACTAACGTTATTGCCTAATTTGAG 58.883 38.462 8.76 0.00 37.22 3.02
50 51 7.201496 CGACTAACGTTATTGCCTAATTTGAGT 60.201 37.037 8.76 0.00 37.22 3.41
51 52 8.331730 ACTAACGTTATTGCCTAATTTGAGTT 57.668 30.769 8.76 0.00 0.00 3.01
52 53 9.439500 ACTAACGTTATTGCCTAATTTGAGTTA 57.561 29.630 8.76 0.00 0.00 2.24
55 56 7.927048 ACGTTATTGCCTAATTTGAGTTATCC 58.073 34.615 0.00 0.00 0.00 2.59
56 57 7.012989 ACGTTATTGCCTAATTTGAGTTATCCC 59.987 37.037 0.00 0.00 0.00 3.85
57 58 7.360361 GTTATTGCCTAATTTGAGTTATCCCG 58.640 38.462 0.00 0.00 0.00 5.14
58 59 4.764050 TGCCTAATTTGAGTTATCCCGA 57.236 40.909 0.00 0.00 0.00 5.14
59 60 4.448210 TGCCTAATTTGAGTTATCCCGAC 58.552 43.478 0.00 0.00 0.00 4.79
60 61 3.493503 GCCTAATTTGAGTTATCCCGACG 59.506 47.826 0.00 0.00 0.00 5.12
61 62 4.738541 GCCTAATTTGAGTTATCCCGACGA 60.739 45.833 0.00 0.00 0.00 4.20
62 63 5.353938 CCTAATTTGAGTTATCCCGACGAA 58.646 41.667 0.00 0.00 0.00 3.85
63 64 5.813672 CCTAATTTGAGTTATCCCGACGAAA 59.186 40.000 0.00 0.00 0.00 3.46
64 65 5.541098 AATTTGAGTTATCCCGACGAAAC 57.459 39.130 0.00 0.00 0.00 2.78
65 66 2.267188 TGAGTTATCCCGACGAAACG 57.733 50.000 0.00 0.00 0.00 3.60
66 67 1.541147 TGAGTTATCCCGACGAAACGT 59.459 47.619 0.00 0.00 45.10 3.99
67 68 2.030007 TGAGTTATCCCGACGAAACGTT 60.030 45.455 0.00 0.00 41.37 3.99
68 69 3.190327 TGAGTTATCCCGACGAAACGTTA 59.810 43.478 0.00 0.00 41.37 3.18
69 70 3.501950 AGTTATCCCGACGAAACGTTAC 58.498 45.455 0.00 0.00 41.37 2.50
70 71 3.191371 AGTTATCCCGACGAAACGTTACT 59.809 43.478 0.00 0.00 41.37 2.24
71 72 1.986698 ATCCCGACGAAACGTTACTG 58.013 50.000 0.00 0.00 41.37 2.74
72 73 0.667993 TCCCGACGAAACGTTACTGT 59.332 50.000 0.00 0.00 41.37 3.55
73 74 1.066908 TCCCGACGAAACGTTACTGTT 59.933 47.619 0.00 0.00 41.37 3.16
74 75 1.860326 CCCGACGAAACGTTACTGTTT 59.140 47.619 0.00 5.36 44.36 2.83
75 76 3.049206 CCCGACGAAACGTTACTGTTTA 58.951 45.455 0.00 0.00 41.89 2.01
76 77 3.489047 CCCGACGAAACGTTACTGTTTAA 59.511 43.478 0.00 0.00 41.89 1.52
77 78 4.150451 CCCGACGAAACGTTACTGTTTAAT 59.850 41.667 0.00 0.00 41.89 1.40
78 79 5.344665 CCCGACGAAACGTTACTGTTTAATA 59.655 40.000 0.00 0.00 41.89 0.98
79 80 6.128956 CCCGACGAAACGTTACTGTTTAATAA 60.129 38.462 0.00 0.00 41.89 1.40
80 81 7.280055 CCGACGAAACGTTACTGTTTAATAAA 58.720 34.615 0.00 0.00 41.89 1.40
81 82 7.472186 CCGACGAAACGTTACTGTTTAATAAAG 59.528 37.037 0.00 0.00 41.89 1.85
82 83 7.004718 CGACGAAACGTTACTGTTTAATAAAGC 59.995 37.037 0.00 0.00 41.89 3.51
83 84 7.629130 ACGAAACGTTACTGTTTAATAAAGCA 58.371 30.769 0.00 0.00 41.89 3.91
84 85 8.121708 ACGAAACGTTACTGTTTAATAAAGCAA 58.878 29.630 0.00 0.00 41.89 3.91
85 86 8.615585 CGAAACGTTACTGTTTAATAAAGCAAG 58.384 33.333 0.00 0.00 41.89 4.01
86 87 9.442033 GAAACGTTACTGTTTAATAAAGCAAGT 57.558 29.630 0.00 0.00 41.89 3.16
87 88 8.776680 AACGTTACTGTTTAATAAAGCAAGTG 57.223 30.769 0.00 0.00 0.00 3.16
88 89 7.922837 ACGTTACTGTTTAATAAAGCAAGTGT 58.077 30.769 6.14 0.00 0.00 3.55
89 90 7.853929 ACGTTACTGTTTAATAAAGCAAGTGTG 59.146 33.333 6.14 0.00 0.00 3.82
90 91 7.853929 CGTTACTGTTTAATAAAGCAAGTGTGT 59.146 33.333 6.14 0.00 0.00 3.72
91 92 9.511144 GTTACTGTTTAATAAAGCAAGTGTGTT 57.489 29.630 6.14 0.00 0.00 3.32
93 94 8.406172 ACTGTTTAATAAAGCAAGTGTGTTTG 57.594 30.769 0.00 0.00 0.00 2.93
94 95 7.491048 ACTGTTTAATAAAGCAAGTGTGTTTGG 59.509 33.333 0.00 0.00 0.00 3.28
95 96 7.548097 TGTTTAATAAAGCAAGTGTGTTTGGA 58.452 30.769 0.00 0.00 0.00 3.53
96 97 7.489757 TGTTTAATAAAGCAAGTGTGTTTGGAC 59.510 33.333 0.00 0.00 0.00 4.02
418 419 1.066914 GCCGATGATGCTCGAGATTC 58.933 55.000 18.75 12.19 41.12 2.52
425 426 2.923655 TGATGCTCGAGATTCAACGTTC 59.076 45.455 18.75 0.00 0.00 3.95
456 457 8.468399 GTTATCGGGGTCCAACATTTTAATTTA 58.532 33.333 0.00 0.00 0.00 1.40
490 494 9.233232 GTATATGAAGATGGCGTTTTTAAAAGG 57.767 33.333 5.85 5.85 0.00 3.11
495 499 7.713073 TGAAGATGGCGTTTTTAAAAGGAAAAT 59.287 29.630 13.36 4.01 0.00 1.82
500 504 7.689299 TGGCGTTTTTAAAAGGAAAATGAAAG 58.311 30.769 13.36 0.00 35.86 2.62
517 521 4.857251 GGGTAAGTCAGCCATCCG 57.143 61.111 0.00 0.00 44.80 4.18
518 522 2.208527 GGGTAAGTCAGCCATCCGA 58.791 57.895 0.00 0.00 44.80 4.55
519 523 0.759346 GGGTAAGTCAGCCATCCGAT 59.241 55.000 0.00 0.00 44.80 4.18
520 524 1.541233 GGGTAAGTCAGCCATCCGATG 60.541 57.143 0.93 0.93 44.80 3.84
521 525 1.139058 GGTAAGTCAGCCATCCGATGT 59.861 52.381 7.60 0.00 0.00 3.06
522 526 2.205074 GTAAGTCAGCCATCCGATGTG 58.795 52.381 7.60 0.61 0.00 3.21
524 528 0.107993 AGTCAGCCATCCGATGTGTG 60.108 55.000 7.60 4.57 0.00 3.82
529 533 1.541147 AGCCATCCGATGTGTGTTTTG 59.459 47.619 7.60 0.00 0.00 2.44
537 541 0.455410 ATGTGTGTTTTGTGCGCACT 59.545 45.000 37.59 13.75 44.78 4.40
553 557 0.670546 CACTGTCGGCGGTTGAAGAT 60.671 55.000 7.21 0.00 30.42 2.40
562 566 1.202222 GCGGTTGAAGATCATGCAAGG 60.202 52.381 0.00 0.00 0.00 3.61
567 571 0.384669 GAAGATCATGCAAGGCAGGC 59.615 55.000 0.00 0.00 43.65 4.85
584 588 4.289379 CAGCGCGGCATCACATCG 62.289 66.667 8.83 0.00 0.00 3.84
598 606 1.588404 CACATCGTTCATACTCGTGGC 59.412 52.381 0.00 0.00 0.00 5.01
599 607 0.846401 CATCGTTCATACTCGTGGCG 59.154 55.000 0.00 0.00 0.00 5.69
616 624 3.002348 GTGGCGAGAATCCGATTAAAAGG 59.998 47.826 0.00 0.00 0.00 3.11
618 626 3.495001 GGCGAGAATCCGATTAAAAGGAG 59.505 47.826 8.06 0.00 40.26 3.69
619 627 4.120589 GCGAGAATCCGATTAAAAGGAGT 58.879 43.478 8.06 5.54 40.26 3.85
620 628 5.287226 GCGAGAATCCGATTAAAAGGAGTA 58.713 41.667 8.06 0.00 40.26 2.59
621 629 5.927115 GCGAGAATCCGATTAAAAGGAGTAT 59.073 40.000 8.06 3.31 40.26 2.12
622 630 7.088905 GCGAGAATCCGATTAAAAGGAGTATA 58.911 38.462 8.06 0.00 40.26 1.47
654 662 0.580104 GATGTATGGCGCCAACGTAC 59.420 55.000 36.33 29.63 42.83 3.67
683 691 0.369931 CGACACCGACACGTATACGA 59.630 55.000 30.77 0.00 39.50 3.43
684 692 1.590679 CGACACCGACACGTATACGAG 60.591 57.143 30.77 24.76 39.50 4.18
707 715 0.171455 AAGACGCACGAGACCAGATC 59.829 55.000 0.00 0.00 0.00 2.75
741 749 1.270625 CGTGGACTAAACAAGCTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
773 784 5.285134 CGTTAGCGAGAAGAGAGAAGAAAAG 59.715 44.000 0.00 0.00 41.33 2.27
774 785 4.864704 AGCGAGAAGAGAGAAGAAAAGT 57.135 40.909 0.00 0.00 0.00 2.66
775 786 5.968528 AGCGAGAAGAGAGAAGAAAAGTA 57.031 39.130 0.00 0.00 0.00 2.24
776 787 5.705902 AGCGAGAAGAGAGAAGAAAAGTAC 58.294 41.667 0.00 0.00 0.00 2.73
777 788 4.555747 GCGAGAAGAGAGAAGAAAAGTACG 59.444 45.833 0.00 0.00 0.00 3.67
778 789 5.691815 CGAGAAGAGAGAAGAAAAGTACGT 58.308 41.667 0.00 0.00 0.00 3.57
779 790 6.620303 GCGAGAAGAGAGAAGAAAAGTACGTA 60.620 42.308 0.00 0.00 0.00 3.57
780 791 6.957077 CGAGAAGAGAGAAGAAAAGTACGTAG 59.043 42.308 0.00 0.00 0.00 3.51
853 874 3.835378 ACGTCAAAAACCGAACAAACT 57.165 38.095 0.00 0.00 0.00 2.66
862 883 2.585263 CGAACAAACTCGGTCACGT 58.415 52.632 0.00 0.00 41.85 4.49
863 884 1.757574 CGAACAAACTCGGTCACGTA 58.242 50.000 0.00 0.00 41.85 3.57
864 885 1.449418 CGAACAAACTCGGTCACGTAC 59.551 52.381 0.00 0.00 41.85 3.67
865 886 2.462889 GAACAAACTCGGTCACGTACA 58.537 47.619 0.00 0.00 41.85 2.90
866 887 2.129823 ACAAACTCGGTCACGTACAG 57.870 50.000 0.00 0.00 41.85 2.74
867 888 1.269413 ACAAACTCGGTCACGTACAGG 60.269 52.381 0.00 0.00 41.85 4.00
869 890 1.457823 AACTCGGTCACGTACAGGCA 61.458 55.000 0.00 0.00 41.85 4.75
870 891 1.443872 CTCGGTCACGTACAGGCAC 60.444 63.158 0.00 0.00 41.85 5.01
871 892 2.137425 CTCGGTCACGTACAGGCACA 62.137 60.000 0.00 0.00 41.85 4.57
872 893 1.080093 CGGTCACGTACAGGCACAT 60.080 57.895 0.00 0.00 34.81 3.21
875 896 0.037697 GTCACGTACAGGCACATCCA 60.038 55.000 0.00 0.00 37.29 3.41
876 897 0.246360 TCACGTACAGGCACATCCAG 59.754 55.000 0.00 0.00 37.29 3.86
877 898 0.246360 CACGTACAGGCACATCCAGA 59.754 55.000 0.00 0.00 37.29 3.86
878 899 0.532573 ACGTACAGGCACATCCAGAG 59.467 55.000 0.00 0.00 37.29 3.35
883 904 2.124403 GGCACATCCAGAGCCCAG 60.124 66.667 0.00 0.00 46.94 4.45
884 905 2.827642 GCACATCCAGAGCCCAGC 60.828 66.667 0.00 0.00 0.00 4.85
885 906 2.124403 CACATCCAGAGCCCAGCC 60.124 66.667 0.00 0.00 0.00 4.85
886 907 2.611800 ACATCCAGAGCCCAGCCA 60.612 61.111 0.00 0.00 0.00 4.75
887 908 2.124403 CATCCAGAGCCCAGCCAC 60.124 66.667 0.00 0.00 0.00 5.01
888 909 3.790437 ATCCAGAGCCCAGCCACG 61.790 66.667 0.00 0.00 0.00 4.94
901 922 2.655364 CCACGCACGGCTAGATCG 60.655 66.667 0.00 0.00 0.00 3.69
902 923 2.102357 CACGCACGGCTAGATCGT 59.898 61.111 5.86 5.86 41.93 3.73
903 924 1.516386 CACGCACGGCTAGATCGTT 60.516 57.895 8.51 0.00 38.94 3.85
904 925 1.226603 ACGCACGGCTAGATCGTTC 60.227 57.895 8.51 4.25 38.94 3.95
905 926 2.286559 CGCACGGCTAGATCGTTCG 61.287 63.158 13.80 13.80 40.15 3.95
906 927 1.226603 GCACGGCTAGATCGTTCGT 60.227 57.895 8.51 1.77 38.94 3.85
908 929 1.189403 CACGGCTAGATCGTTCGTTC 58.811 55.000 8.51 0.00 38.94 3.95
909 930 0.806868 ACGGCTAGATCGTTCGTTCA 59.193 50.000 5.86 0.00 37.61 3.18
910 931 1.200716 ACGGCTAGATCGTTCGTTCAA 59.799 47.619 5.86 0.00 37.61 2.69
911 932 2.159282 ACGGCTAGATCGTTCGTTCAAT 60.159 45.455 5.86 0.00 37.61 2.57
913 934 2.468040 GGCTAGATCGTTCGTTCAATCG 59.532 50.000 0.00 0.00 0.00 3.34
914 935 3.106672 GCTAGATCGTTCGTTCAATCGT 58.893 45.455 0.00 0.00 0.00 3.73
915 936 3.546670 GCTAGATCGTTCGTTCAATCGTT 59.453 43.478 0.00 0.00 0.00 3.85
917 938 3.571571 AGATCGTTCGTTCAATCGTTCA 58.428 40.909 6.15 0.00 0.00 3.18
918 939 4.174009 AGATCGTTCGTTCAATCGTTCAT 58.826 39.130 6.15 0.00 0.00 2.57
919 940 3.965209 TCGTTCGTTCAATCGTTCATC 57.035 42.857 0.00 0.00 0.00 2.92
920 941 3.571571 TCGTTCGTTCAATCGTTCATCT 58.428 40.909 0.00 0.00 0.00 2.90
921 942 3.363724 TCGTTCGTTCAATCGTTCATCTG 59.636 43.478 0.00 0.00 0.00 2.90
923 944 3.313012 TCGTTCAATCGTTCATCTGGT 57.687 42.857 0.00 0.00 0.00 4.00
1009 1426 0.754472 TAGGAGGGCGGGATAAAACG 59.246 55.000 0.00 0.00 0.00 3.60
1015 1432 1.721664 GGCGGGATAAAACGAAGGCC 61.722 60.000 0.00 0.00 0.00 5.19
1982 2429 2.928361 CGACACAACGGACACAGC 59.072 61.111 0.00 0.00 0.00 4.40
1983 2430 2.927618 CGACACAACGGACACAGCG 61.928 63.158 0.00 0.00 0.00 5.18
1984 2431 2.587753 ACACAACGGACACAGCGG 60.588 61.111 0.00 0.00 0.00 5.52
1985 2432 2.279851 CACAACGGACACAGCGGA 60.280 61.111 0.00 0.00 0.00 5.54
1986 2433 1.667830 CACAACGGACACAGCGGAT 60.668 57.895 0.00 0.00 0.00 4.18
1987 2434 1.667830 ACAACGGACACAGCGGATG 60.668 57.895 0.00 0.00 0.00 3.51
1988 2435 1.374125 CAACGGACACAGCGGATGA 60.374 57.895 0.00 0.00 0.00 2.92
1989 2436 1.079819 AACGGACACAGCGGATGAG 60.080 57.895 0.00 0.00 0.00 2.90
1995 2442 0.904865 ACACAGCGGATGAGGAGGAA 60.905 55.000 0.00 0.00 0.00 3.36
2171 2618 4.598894 CTCGATGCTCTGGGGCGG 62.599 72.222 0.00 0.00 34.52 6.13
2202 2649 3.771491 GCAGCTCACGCTCACACG 61.771 66.667 0.00 0.00 45.15 4.49
2203 2650 2.050077 CAGCTCACGCTCACACGA 60.050 61.111 0.00 0.00 45.15 4.35
2204 2651 2.049985 AGCTCACGCTCACACGAC 60.050 61.111 0.00 0.00 45.15 4.34
2205 2652 3.461982 GCTCACGCTCACACGACG 61.462 66.667 0.00 0.00 36.70 5.12
2206 2653 3.461982 CTCACGCTCACACGACGC 61.462 66.667 0.00 0.00 36.70 5.19
2286 2733 2.197324 TTGGTTGGTGTGGCCCTC 59.803 61.111 0.00 0.00 36.04 4.30
2312 2759 3.560068 GCTTCTCCTTTCGTCACTTTTCA 59.440 43.478 0.00 0.00 0.00 2.69
2316 2763 4.991056 TCTCCTTTCGTCACTTTTCATCAG 59.009 41.667 0.00 0.00 0.00 2.90
2350 2797 6.758416 TCTGTGAATAGCATAGCAACAACTAG 59.242 38.462 0.00 0.00 35.86 2.57
2351 2798 6.406370 TGTGAATAGCATAGCAACAACTAGT 58.594 36.000 0.00 0.00 0.00 2.57
2352 2799 7.552459 TGTGAATAGCATAGCAACAACTAGTA 58.448 34.615 0.00 0.00 0.00 1.82
2353 2800 7.706607 TGTGAATAGCATAGCAACAACTAGTAG 59.293 37.037 0.00 0.00 0.00 2.57
2354 2801 7.921214 GTGAATAGCATAGCAACAACTAGTAGA 59.079 37.037 3.59 0.00 0.00 2.59
2355 2802 8.474831 TGAATAGCATAGCAACAACTAGTAGAA 58.525 33.333 3.59 0.00 0.00 2.10
2356 2803 8.649973 AATAGCATAGCAACAACTAGTAGAAC 57.350 34.615 3.59 0.00 0.00 3.01
2389 2840 4.207955 TGTGCAGTAGACCAGTAGATAGG 58.792 47.826 0.00 0.00 0.00 2.57
2391 2842 3.204606 TGCAGTAGACCAGTAGATAGGGT 59.795 47.826 0.00 0.00 37.70 4.34
2392 2843 4.216708 GCAGTAGACCAGTAGATAGGGTT 58.783 47.826 0.00 0.00 34.39 4.11
2394 2845 5.128991 GCAGTAGACCAGTAGATAGGGTTTT 59.871 44.000 0.00 0.00 34.39 2.43
2395 2846 6.351966 GCAGTAGACCAGTAGATAGGGTTTTT 60.352 42.308 0.00 0.00 34.39 1.94
2419 2870 7.931578 TTTTTGTTGAGAAAAGACCAGTAGA 57.068 32.000 0.00 0.00 0.00 2.59
2420 2871 8.519799 TTTTTGTTGAGAAAAGACCAGTAGAT 57.480 30.769 0.00 0.00 0.00 1.98
2421 2872 9.621629 TTTTTGTTGAGAAAAGACCAGTAGATA 57.378 29.630 0.00 0.00 0.00 1.98
2422 2873 8.833231 TTTGTTGAGAAAAGACCAGTAGATAG 57.167 34.615 0.00 0.00 0.00 2.08
2423 2874 6.936279 TGTTGAGAAAAGACCAGTAGATAGG 58.064 40.000 0.00 0.00 0.00 2.57
2424 2875 6.497259 TGTTGAGAAAAGACCAGTAGATAGGT 59.503 38.462 0.00 0.00 41.83 3.08
2425 2876 7.672660 TGTTGAGAAAAGACCAGTAGATAGGTA 59.327 37.037 0.00 0.00 38.50 3.08
2426 2877 7.883391 TGAGAAAAGACCAGTAGATAGGTAG 57.117 40.000 0.00 0.00 38.50 3.18
2427 2878 6.834451 TGAGAAAAGACCAGTAGATAGGTAGG 59.166 42.308 0.00 0.00 38.50 3.18
2428 2879 6.982899 AGAAAAGACCAGTAGATAGGTAGGA 58.017 40.000 0.00 0.00 38.50 2.94
2429 2880 7.064229 AGAAAAGACCAGTAGATAGGTAGGAG 58.936 42.308 0.00 0.00 38.50 3.69
2430 2881 4.376225 AGACCAGTAGATAGGTAGGAGC 57.624 50.000 0.00 0.00 38.50 4.70
2431 2882 3.984770 AGACCAGTAGATAGGTAGGAGCT 59.015 47.826 0.00 0.00 38.50 4.09
2459 2910 4.934797 AGAAGACTCCAATCCAATCCAA 57.065 40.909 0.00 0.00 0.00 3.53
2460 2911 5.261040 AGAAGACTCCAATCCAATCCAAA 57.739 39.130 0.00 0.00 0.00 3.28
2498 2949 5.412594 TGATGTACAAAGAGTCCAAGATTGC 59.587 40.000 0.00 0.00 0.00 3.56
2502 2953 3.319122 ACAAAGAGTCCAAGATTGCAACC 59.681 43.478 0.00 0.00 0.00 3.77
2516 2967 9.023967 CAAGATTGCAACCTTATTATTTGTAGC 57.976 33.333 5.53 0.00 0.00 3.58
2555 3006 3.648339 TGTGCAGGAATTGAAAAGAGC 57.352 42.857 0.00 0.00 0.00 4.09
2632 3092 1.750018 CATGTGATTGGCGCCTCCA 60.750 57.895 29.70 19.12 44.85 3.86
2685 3145 3.892527 CACGACGTGCGATTAATTACA 57.107 42.857 16.06 0.00 44.57 2.41
2686 3146 4.431894 CACGACGTGCGATTAATTACAT 57.568 40.909 16.06 0.00 44.57 2.29
2692 3152 7.790673 ACGACGTGCGATTAATTACATATTTTC 59.209 33.333 13.06 0.00 44.57 2.29
2788 3360 3.441290 CCTTCCTCGGCGTCGTCT 61.441 66.667 10.18 0.00 37.69 4.18
2790 3362 4.415332 TTCCTCGGCGTCGTCTGC 62.415 66.667 10.18 0.00 37.69 4.26
2794 3366 4.273257 TCGGCGTCGTCTGCACAA 62.273 61.111 10.18 0.00 37.69 3.33
2795 3367 3.767230 CGGCGTCGTCTGCACAAG 61.767 66.667 0.00 0.00 0.00 3.16
2796 3368 2.355837 GGCGTCGTCTGCACAAGA 60.356 61.111 0.00 0.00 0.00 3.02
2797 3369 1.954146 GGCGTCGTCTGCACAAGAA 60.954 57.895 0.00 0.00 36.40 2.52
2798 3370 1.488957 GCGTCGTCTGCACAAGAAG 59.511 57.895 0.00 0.00 36.40 2.85
2799 3371 0.939577 GCGTCGTCTGCACAAGAAGA 60.940 55.000 0.00 0.00 40.58 2.87
2800 3372 1.056103 CGTCGTCTGCACAAGAAGAG 58.944 55.000 0.00 0.00 43.02 2.85
2801 3373 0.787183 GTCGTCTGCACAAGAAGAGC 59.213 55.000 0.00 0.00 43.02 4.09
2804 3376 1.155042 GTCTGCACAAGAAGAGCTGG 58.845 55.000 0.00 0.00 36.40 4.85
2805 3377 0.035881 TCTGCACAAGAAGAGCTGGG 59.964 55.000 0.00 0.00 34.44 4.45
2806 3378 0.959372 CTGCACAAGAAGAGCTGGGG 60.959 60.000 0.00 0.00 34.66 4.96
2807 3379 1.376466 GCACAAGAAGAGCTGGGGA 59.624 57.895 0.00 0.00 0.00 4.81
2808 3380 0.034670 GCACAAGAAGAGCTGGGGAT 60.035 55.000 0.00 0.00 0.00 3.85
2809 3381 1.747709 CACAAGAAGAGCTGGGGATG 58.252 55.000 0.00 0.00 0.00 3.51
2810 3382 0.034670 ACAAGAAGAGCTGGGGATGC 60.035 55.000 0.00 0.00 0.00 3.91
2811 3383 0.034767 CAAGAAGAGCTGGGGATGCA 60.035 55.000 0.00 0.00 0.00 3.96
2812 3384 0.924823 AAGAAGAGCTGGGGATGCAT 59.075 50.000 0.00 0.00 0.00 3.96
2813 3385 0.473326 AGAAGAGCTGGGGATGCATC 59.527 55.000 18.81 18.81 0.00 3.91
2814 3386 0.182061 GAAGAGCTGGGGATGCATCA 59.818 55.000 27.25 7.70 0.00 3.07
2815 3387 0.851469 AAGAGCTGGGGATGCATCAT 59.149 50.000 27.25 6.28 0.00 2.45
2816 3388 0.110678 AGAGCTGGGGATGCATCATG 59.889 55.000 27.25 14.41 0.00 3.07
2817 3389 1.524863 GAGCTGGGGATGCATCATGC 61.525 60.000 27.25 22.03 45.29 4.06
2828 3400 1.208642 GCATCATGCATCGACGACGA 61.209 55.000 13.07 13.07 44.26 4.20
2836 3408 2.872557 TCGACGACGATCGCCTTT 59.127 55.556 16.60 0.00 45.12 3.11
2837 3409 1.210931 TCGACGACGATCGCCTTTT 59.789 52.632 16.60 0.00 45.12 2.27
2838 3410 1.068832 TCGACGACGATCGCCTTTTG 61.069 55.000 16.60 1.77 45.12 2.44
2839 3411 1.342082 CGACGACGATCGCCTTTTGT 61.342 55.000 16.60 5.46 45.12 2.83
2842 3414 1.068474 CGACGATCGCCTTTTGTCTT 58.932 50.000 16.60 0.00 31.14 3.01
2844 3416 1.798813 GACGATCGCCTTTTGTCTTGT 59.201 47.619 16.60 0.00 0.00 3.16
2845 3417 1.531149 ACGATCGCCTTTTGTCTTGTG 59.469 47.619 16.60 0.00 0.00 3.33
2846 3418 1.798223 CGATCGCCTTTTGTCTTGTGA 59.202 47.619 0.26 0.00 0.00 3.58
2847 3419 2.416547 CGATCGCCTTTTGTCTTGTGAT 59.583 45.455 0.26 0.00 0.00 3.06
2848 3420 3.725895 CGATCGCCTTTTGTCTTGTGATG 60.726 47.826 0.26 0.00 0.00 3.07
2850 3422 2.548057 TCGCCTTTTGTCTTGTGATGAC 59.452 45.455 0.00 0.00 35.21 3.06
2859 3564 1.691976 TCTTGTGATGACCCGAGTTGT 59.308 47.619 0.00 0.00 0.00 3.32
2861 3566 0.320374 TGTGATGACCCGAGTTGTCC 59.680 55.000 0.00 0.00 31.60 4.02
2888 3593 3.696548 GTGGAGACCCTTTTCCATCATTC 59.303 47.826 0.00 0.00 44.74 2.67
2893 3598 3.766051 GACCCTTTTCCATCATTCTGCTT 59.234 43.478 0.00 0.00 0.00 3.91
2896 3624 3.118884 CCTTTTCCATCATTCTGCTTGGG 60.119 47.826 0.00 0.00 0.00 4.12
2897 3625 2.148446 TTCCATCATTCTGCTTGGGG 57.852 50.000 0.00 0.00 0.00 4.96
2898 3626 0.396139 TCCATCATTCTGCTTGGGGC 60.396 55.000 0.00 0.00 42.22 5.80
2907 3635 3.752339 GCTTGGGGCAAAGGCTCG 61.752 66.667 0.00 0.00 43.36 5.03
2908 3636 3.064324 CTTGGGGCAAAGGCTCGG 61.064 66.667 0.00 0.00 43.36 4.63
2909 3637 4.676951 TTGGGGCAAAGGCTCGGG 62.677 66.667 0.00 0.00 43.36 5.14
2927 3655 4.052229 CCCTCGTCGCACTTCCGT 62.052 66.667 0.00 0.00 0.00 4.69
2928 3656 2.049433 CCTCGTCGCACTTCCGTT 60.049 61.111 0.00 0.00 0.00 4.44
2929 3657 2.087009 CCTCGTCGCACTTCCGTTC 61.087 63.158 0.00 0.00 0.00 3.95
2930 3658 2.049802 TCGTCGCACTTCCGTTCC 60.050 61.111 0.00 0.00 0.00 3.62
2931 3659 2.355363 CGTCGCACTTCCGTTCCA 60.355 61.111 0.00 0.00 0.00 3.53
2932 3660 2.654912 CGTCGCACTTCCGTTCCAC 61.655 63.158 0.00 0.00 0.00 4.02
2933 3661 1.593209 GTCGCACTTCCGTTCCACA 60.593 57.895 0.00 0.00 0.00 4.17
2934 3662 1.593209 TCGCACTTCCGTTCCACAC 60.593 57.895 0.00 0.00 0.00 3.82
2935 3663 2.604174 CGCACTTCCGTTCCACACC 61.604 63.158 0.00 0.00 0.00 4.16
2936 3664 1.227853 GCACTTCCGTTCCACACCT 60.228 57.895 0.00 0.00 0.00 4.00
2937 3665 1.507141 GCACTTCCGTTCCACACCTG 61.507 60.000 0.00 0.00 0.00 4.00
2938 3666 1.227853 ACTTCCGTTCCACACCTGC 60.228 57.895 0.00 0.00 0.00 4.85
2939 3667 2.280524 TTCCGTTCCACACCTGCG 60.281 61.111 0.00 0.00 0.00 5.18
2940 3668 2.709125 CTTCCGTTCCACACCTGCGA 62.709 60.000 0.00 0.00 0.00 5.10
2941 3669 2.709125 TTCCGTTCCACACCTGCGAG 62.709 60.000 0.00 0.00 0.00 5.03
2942 3670 3.414700 CGTTCCACACCTGCGAGC 61.415 66.667 0.00 0.00 0.00 5.03
2943 3671 3.414700 GTTCCACACCTGCGAGCG 61.415 66.667 0.00 0.00 0.00 5.03
2944 3672 3.611674 TTCCACACCTGCGAGCGA 61.612 61.111 0.00 0.00 0.00 4.93
2945 3673 2.942796 TTCCACACCTGCGAGCGAT 61.943 57.895 0.00 0.00 0.00 4.58
2946 3674 3.190849 CCACACCTGCGAGCGATG 61.191 66.667 0.00 0.00 0.00 3.84
2947 3675 3.857854 CACACCTGCGAGCGATGC 61.858 66.667 0.00 0.00 0.00 3.91
2950 3678 4.393155 ACCTGCGAGCGATGCCAA 62.393 61.111 0.00 0.00 0.00 4.52
2951 3679 3.126879 CCTGCGAGCGATGCCAAA 61.127 61.111 0.00 0.00 0.00 3.28
2952 3680 2.689785 CCTGCGAGCGATGCCAAAA 61.690 57.895 0.00 0.00 0.00 2.44
2953 3681 1.226211 CTGCGAGCGATGCCAAAAG 60.226 57.895 0.00 0.00 0.00 2.27
2954 3682 2.100991 GCGAGCGATGCCAAAAGG 59.899 61.111 0.00 0.00 0.00 3.11
2955 3683 2.100991 CGAGCGATGCCAAAAGGC 59.899 61.111 0.00 0.00 0.00 4.35
2956 3684 2.100991 GAGCGATGCCAAAAGGCG 59.899 61.111 1.66 0.00 37.77 5.52
2957 3685 3.401243 GAGCGATGCCAAAAGGCGG 62.401 63.158 1.66 0.00 37.77 6.13
2958 3686 3.439540 GCGATGCCAAAAGGCGGA 61.440 61.111 1.66 0.00 37.77 5.54
2976 3704 0.524862 GAAGCAGCACCAACATCAGG 59.475 55.000 0.00 0.00 0.00 3.86
3020 3748 6.867662 AAGAAAGAAACGAACACAGATCAT 57.132 33.333 0.00 0.00 0.00 2.45
3021 3749 6.233430 AGAAAGAAACGAACACAGATCATG 57.767 37.500 0.00 0.00 0.00 3.07
3022 3750 5.991606 AGAAAGAAACGAACACAGATCATGA 59.008 36.000 0.00 0.00 0.00 3.07
3023 3751 6.652481 AGAAAGAAACGAACACAGATCATGAT 59.348 34.615 8.25 8.25 0.00 2.45
3026 3754 3.893326 ACGAACACAGATCATGATCCA 57.107 42.857 28.23 0.00 38.58 3.41
3027 3755 3.525537 ACGAACACAGATCATGATCCAC 58.474 45.455 28.23 14.03 38.58 4.02
3029 3757 3.554731 CGAACACAGATCATGATCCACTG 59.445 47.826 28.23 22.38 38.58 3.66
3030 3758 4.678840 CGAACACAGATCATGATCCACTGA 60.679 45.833 28.23 0.00 38.58 3.41
3031 3759 4.831674 ACACAGATCATGATCCACTGAA 57.168 40.909 28.23 0.00 38.58 3.02
3032 3760 4.511527 ACACAGATCATGATCCACTGAAC 58.488 43.478 28.23 5.46 38.58 3.18
3033 3761 4.019950 ACACAGATCATGATCCACTGAACA 60.020 41.667 28.23 0.00 38.58 3.18
3034 3762 5.123936 CACAGATCATGATCCACTGAACAT 58.876 41.667 28.23 7.22 38.58 2.71
3035 3763 5.589050 CACAGATCATGATCCACTGAACATT 59.411 40.000 28.23 6.52 38.58 2.71
3036 3764 6.764560 CACAGATCATGATCCACTGAACATTA 59.235 38.462 28.23 0.00 38.58 1.90
3037 3765 7.281549 CACAGATCATGATCCACTGAACATTAA 59.718 37.037 28.23 0.00 38.58 1.40
3038 3766 7.281774 ACAGATCATGATCCACTGAACATTAAC 59.718 37.037 28.23 2.31 38.58 2.01
3039 3767 7.281549 CAGATCATGATCCACTGAACATTAACA 59.718 37.037 28.23 0.00 38.58 2.41
3041 3769 6.475504 TCATGATCCACTGAACATTAACAGT 58.524 36.000 0.00 0.00 46.32 3.55
3042 3770 7.619965 TCATGATCCACTGAACATTAACAGTA 58.380 34.615 0.00 0.00 44.07 2.74
3044 3772 7.905604 TGATCCACTGAACATTAACAGTAAG 57.094 36.000 0.00 0.00 44.07 2.34
3045 3773 6.371548 TGATCCACTGAACATTAACAGTAAGC 59.628 38.462 0.00 0.00 44.07 3.09
3046 3774 5.616270 TCCACTGAACATTAACAGTAAGCA 58.384 37.500 0.00 0.00 44.07 3.91
3047 3775 5.468746 TCCACTGAACATTAACAGTAAGCAC 59.531 40.000 0.00 0.00 44.07 4.40
3049 3777 6.649141 CCACTGAACATTAACAGTAAGCACTA 59.351 38.462 0.00 0.00 44.07 2.74
3050 3778 7.360101 CCACTGAACATTAACAGTAAGCACTAC 60.360 40.741 0.00 0.00 44.07 2.73
3051 3779 7.385205 CACTGAACATTAACAGTAAGCACTACT 59.615 37.037 0.00 0.00 44.07 2.57
3053 3781 8.306680 TGAACATTAACAGTAAGCACTACTTC 57.693 34.615 0.00 0.00 38.92 3.01
3054 3782 8.148351 TGAACATTAACAGTAAGCACTACTTCT 58.852 33.333 0.00 0.00 38.92 2.85
3056 3784 6.369065 ACATTAACAGTAAGCACTACTTCTGC 59.631 38.462 0.00 0.00 38.92 4.26
3058 3786 5.723672 AACAGTAAGCACTACTTCTGCTA 57.276 39.130 0.00 0.00 44.45 3.49
3059 3787 5.723672 ACAGTAAGCACTACTTCTGCTAA 57.276 39.130 0.00 0.00 44.45 3.09
3060 3788 5.471257 ACAGTAAGCACTACTTCTGCTAAC 58.529 41.667 0.00 0.00 44.45 2.34
3061 3789 5.244178 ACAGTAAGCACTACTTCTGCTAACT 59.756 40.000 0.00 0.00 44.45 2.24
3062 3790 6.433404 ACAGTAAGCACTACTTCTGCTAACTA 59.567 38.462 0.00 0.00 44.45 2.24
3065 3793 5.570234 AGCACTACTTCTGCTAACTACTC 57.430 43.478 0.00 0.00 43.37 2.59
3066 3794 4.399934 AGCACTACTTCTGCTAACTACTCC 59.600 45.833 0.00 0.00 43.37 3.85
3067 3795 4.399934 GCACTACTTCTGCTAACTACTCCT 59.600 45.833 0.00 0.00 0.00 3.69
3068 3796 5.589452 GCACTACTTCTGCTAACTACTCCTA 59.411 44.000 0.00 0.00 0.00 2.94
3070 3798 6.598457 CACTACTTCTGCTAACTACTCCTACA 59.402 42.308 0.00 0.00 0.00 2.74
3071 3799 7.283580 CACTACTTCTGCTAACTACTCCTACAT 59.716 40.741 0.00 0.00 0.00 2.29
3073 3801 7.811117 ACTTCTGCTAACTACTCCTACATAG 57.189 40.000 0.00 0.00 0.00 2.23
3074 3802 7.348033 ACTTCTGCTAACTACTCCTACATAGT 58.652 38.462 0.00 0.00 32.93 2.12
3077 3805 9.863650 TTCTGCTAACTACTCCTACATAGTATT 57.136 33.333 0.00 0.00 31.30 1.89
3088 3816 8.545472 ACTCCTACATAGTATTTTTAAGCACCA 58.455 33.333 0.00 0.00 0.00 4.17
3090 3818 8.545472 TCCTACATAGTATTTTTAAGCACCACT 58.455 33.333 0.00 0.00 0.00 4.00
3097 3825 8.240267 AGTATTTTTAAGCACCACTTTTACCA 57.760 30.769 0.00 0.00 39.97 3.25
3108 3836 8.643324 AGCACCACTTTTACCATAATAAACAAA 58.357 29.630 0.00 0.00 0.00 2.83
3117 3845 9.451002 TTTACCATAATAAACAAAGATCACGGA 57.549 29.630 0.00 0.00 0.00 4.69
3118 3846 7.931578 ACCATAATAAACAAAGATCACGGAA 57.068 32.000 0.00 0.00 0.00 4.30
3119 3847 8.343168 ACCATAATAAACAAAGATCACGGAAA 57.657 30.769 0.00 0.00 0.00 3.13
3120 3848 8.458843 ACCATAATAAACAAAGATCACGGAAAG 58.541 33.333 0.00 0.00 0.00 2.62
3121 3849 7.432252 CCATAATAAACAAAGATCACGGAAAGC 59.568 37.037 0.00 0.00 0.00 3.51
3122 3850 6.575162 AATAAACAAAGATCACGGAAAGCT 57.425 33.333 0.00 0.00 0.00 3.74
3123 3851 3.904136 AACAAAGATCACGGAAAGCTG 57.096 42.857 0.00 0.00 0.00 4.24
3124 3852 3.126001 ACAAAGATCACGGAAAGCTGA 57.874 42.857 0.00 0.00 0.00 4.26
3126 3854 3.438087 ACAAAGATCACGGAAAGCTGATG 59.562 43.478 0.00 0.00 0.00 3.07
3127 3855 1.661341 AGATCACGGAAAGCTGATGC 58.339 50.000 0.00 0.00 40.05 3.91
3129 3857 1.329906 GATCACGGAAAGCTGATGCAG 59.670 52.381 0.00 0.00 42.74 4.41
3139 3867 3.715854 CTGATGCAGCCTTTTCAGC 57.284 52.632 0.00 0.00 30.23 4.26
3140 3868 0.885879 CTGATGCAGCCTTTTCAGCA 59.114 50.000 0.00 0.00 41.73 4.41
3142 3870 0.886563 GATGCAGCCTTTTCAGCACT 59.113 50.000 0.00 0.00 40.14 4.40
3144 3872 2.205022 TGCAGCCTTTTCAGCACTAT 57.795 45.000 0.00 0.00 31.05 2.12
3145 3873 2.517959 TGCAGCCTTTTCAGCACTATT 58.482 42.857 0.00 0.00 31.05 1.73
3146 3874 2.892852 TGCAGCCTTTTCAGCACTATTT 59.107 40.909 0.00 0.00 31.05 1.40
3148 3876 3.192212 GCAGCCTTTTCAGCACTATTTCT 59.808 43.478 0.00 0.00 0.00 2.52
3149 3877 4.396166 GCAGCCTTTTCAGCACTATTTCTA 59.604 41.667 0.00 0.00 0.00 2.10
3151 3879 6.405176 GCAGCCTTTTCAGCACTATTTCTATT 60.405 38.462 0.00 0.00 0.00 1.73
3152 3880 7.192232 CAGCCTTTTCAGCACTATTTCTATTC 58.808 38.462 0.00 0.00 0.00 1.75
3154 3882 6.319911 GCCTTTTCAGCACTATTTCTATTCCT 59.680 38.462 0.00 0.00 0.00 3.36
3155 3883 7.499232 GCCTTTTCAGCACTATTTCTATTCCTA 59.501 37.037 0.00 0.00 0.00 2.94
3156 3884 8.831550 CCTTTTCAGCACTATTTCTATTCCTAC 58.168 37.037 0.00 0.00 0.00 3.18
3178 4418 9.687210 CCTACATAGTTTTTCAAACCTTTTACC 57.313 33.333 0.00 0.00 0.00 2.85
3187 4427 9.810545 TTTTTCAAACCTTTTACCATAGACAAG 57.189 29.630 0.00 0.00 0.00 3.16
3201 4441 5.757320 CCATAGACAAGATCCAACATGAGTC 59.243 44.000 0.00 0.00 0.00 3.36
3205 4445 3.054802 ACAAGATCCAACATGAGTCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
3208 4448 4.624913 AGATCCAACATGAGTCCTCCTAA 58.375 43.478 0.00 0.00 0.00 2.69
3209 4449 4.653341 AGATCCAACATGAGTCCTCCTAAG 59.347 45.833 0.00 0.00 0.00 2.18
3210 4450 2.501723 TCCAACATGAGTCCTCCTAAGC 59.498 50.000 0.00 0.00 0.00 3.09
3214 4629 2.158842 ACATGAGTCCTCCTAAGCATGC 60.159 50.000 10.51 10.51 37.28 4.06
3218 4633 1.065126 AGTCCTCCTAAGCATGCCAAC 60.065 52.381 15.66 1.37 0.00 3.77
3223 4638 1.098050 CCTAAGCATGCCAACCAGTC 58.902 55.000 15.66 0.00 0.00 3.51
3224 4639 1.098050 CTAAGCATGCCAACCAGTCC 58.902 55.000 15.66 0.00 0.00 3.85
3230 4645 1.619827 CATGCCAACCAGTCCAACAAT 59.380 47.619 0.00 0.00 0.00 2.71
3236 4651 3.004734 CCAACCAGTCCAACAATTCTGAC 59.995 47.826 0.00 0.00 0.00 3.51
3247 4662 4.543590 ACAATTCTGACTGGTAGGACAG 57.456 45.455 0.00 0.00 44.03 3.51
3252 4667 2.300152 TCTGACTGGTAGGACAGCAAAG 59.700 50.000 0.00 0.00 42.21 2.77
3253 4668 2.037772 CTGACTGGTAGGACAGCAAAGT 59.962 50.000 0.00 0.00 42.21 2.66
3254 4669 3.236047 TGACTGGTAGGACAGCAAAGTA 58.764 45.455 0.00 0.00 42.21 2.24
3255 4670 3.006537 TGACTGGTAGGACAGCAAAGTAC 59.993 47.826 0.00 0.00 42.21 2.73
3256 4671 2.969950 ACTGGTAGGACAGCAAAGTACA 59.030 45.455 0.00 0.00 42.21 2.90
3257 4672 3.244112 ACTGGTAGGACAGCAAAGTACAC 60.244 47.826 0.00 0.00 42.21 2.90
3259 4674 3.389983 TGGTAGGACAGCAAAGTACACTT 59.610 43.478 0.00 0.00 37.91 3.16
3261 4676 4.262506 GGTAGGACAGCAAAGTACACTTCT 60.263 45.833 0.00 0.00 34.61 2.85
3262 4677 3.996480 AGGACAGCAAAGTACACTTCTC 58.004 45.455 0.00 0.00 34.61 2.87
3263 4678 3.388024 AGGACAGCAAAGTACACTTCTCA 59.612 43.478 0.00 0.00 34.61 3.27
3265 4680 5.246203 AGGACAGCAAAGTACACTTCTCATA 59.754 40.000 0.00 0.00 34.61 2.15
3267 4682 5.853936 ACAGCAAAGTACACTTCTCATACA 58.146 37.500 0.00 0.00 34.61 2.29
3268 4683 6.288294 ACAGCAAAGTACACTTCTCATACAA 58.712 36.000 0.00 0.00 34.61 2.41
3271 4686 6.425114 AGCAAAGTACACTTCTCATACAACAG 59.575 38.462 0.00 0.00 34.61 3.16
3273 4688 5.730296 AGTACACTTCTCATACAACAGCT 57.270 39.130 0.00 0.00 0.00 4.24
3274 4689 5.473931 AGTACACTTCTCATACAACAGCTG 58.526 41.667 13.48 13.48 0.00 4.24
3275 4690 3.668447 ACACTTCTCATACAACAGCTGG 58.332 45.455 19.93 3.21 0.00 4.85
3276 4691 3.071602 ACACTTCTCATACAACAGCTGGT 59.928 43.478 19.93 9.19 0.00 4.00
3277 4692 4.067896 CACTTCTCATACAACAGCTGGTT 58.932 43.478 19.93 7.19 41.47 3.67
3278 4693 4.153117 CACTTCTCATACAACAGCTGGTTC 59.847 45.833 19.93 0.00 37.72 3.62
3279 4694 4.202357 ACTTCTCATACAACAGCTGGTTCA 60.202 41.667 19.93 0.83 37.72 3.18
3280 4695 3.930336 TCTCATACAACAGCTGGTTCAG 58.070 45.455 19.93 1.73 37.72 3.02
3281 4696 3.324846 TCTCATACAACAGCTGGTTCAGT 59.675 43.478 19.93 8.66 37.72 3.41
3282 4697 3.402110 TCATACAACAGCTGGTTCAGTG 58.598 45.455 19.93 7.71 37.72 3.66
3303 4720 3.882888 TGGACTGACAACTTCCAATCAAC 59.117 43.478 0.00 0.00 36.45 3.18
3315 4732 5.123820 ACTTCCAATCAACGGAACATGTATG 59.876 40.000 0.00 0.00 37.62 2.39
3320 4737 6.247903 CAATCAACGGAACATGTATGTACAC 58.752 40.000 0.00 0.00 40.80 2.90
3323 4740 4.481368 ACGGAACATGTATGTACACCAT 57.519 40.909 0.00 0.30 40.80 3.55
3324 4741 4.439057 ACGGAACATGTATGTACACCATC 58.561 43.478 0.00 0.00 40.80 3.51
3325 4742 4.081365 ACGGAACATGTATGTACACCATCA 60.081 41.667 0.00 0.00 40.80 3.07
3326 4743 4.270084 CGGAACATGTATGTACACCATCAC 59.730 45.833 0.00 0.00 40.80 3.06
3327 4744 4.270084 GGAACATGTATGTACACCATCACG 59.730 45.833 0.00 0.00 40.80 4.35
3328 4745 4.729227 ACATGTATGTACACCATCACGA 57.271 40.909 0.00 0.00 39.68 4.35
3329 4746 5.079689 ACATGTATGTACACCATCACGAA 57.920 39.130 0.00 0.00 39.68 3.85
3330 4747 4.868171 ACATGTATGTACACCATCACGAAC 59.132 41.667 0.00 0.00 39.68 3.95
3331 4748 3.852286 TGTATGTACACCATCACGAACC 58.148 45.455 0.00 0.00 34.86 3.62
3347 4764 5.411361 TCACGAACCCATTATCTTCAACAAG 59.589 40.000 0.00 0.00 0.00 3.16
3357 4774 4.525912 ATCTTCAACAAGCCCAATCAAC 57.474 40.909 0.00 0.00 0.00 3.18
3370 4787 2.224079 CCAATCAACACTTCCACTCACG 59.776 50.000 0.00 0.00 0.00 4.35
3437 4866 8.944212 ACTAGCGTAATTTACATGAACAAAAC 57.056 30.769 0.00 0.00 0.00 2.43
3438 4867 8.561212 ACTAGCGTAATTTACATGAACAAAACA 58.439 29.630 0.00 0.00 0.00 2.83
3439 4868 9.388346 CTAGCGTAATTTACATGAACAAAACAA 57.612 29.630 0.00 0.00 0.00 2.83
3440 4869 8.635877 AGCGTAATTTACATGAACAAAACAAA 57.364 26.923 0.00 0.00 0.00 2.83
3471 4905 3.485394 TCCACAAAAATGACTGCAGCTA 58.515 40.909 15.27 2.79 0.00 3.32
3514 4948 3.019564 CCTTCTGCATGTAAAAGAGGGG 58.980 50.000 0.00 0.00 34.43 4.79
3569 5006 4.343811 TCACAAACTTTACACCAACACG 57.656 40.909 0.00 0.00 0.00 4.49
3576 5013 3.615496 ACTTTACACCAACACGATATCGC 59.385 43.478 24.59 0.00 44.43 4.58
3577 5014 2.943449 TACACCAACACGATATCGCA 57.057 45.000 24.59 0.00 44.43 5.10
3578 5015 1.355971 ACACCAACACGATATCGCAC 58.644 50.000 24.59 0.00 44.43 5.34
3579 5016 1.337354 ACACCAACACGATATCGCACA 60.337 47.619 24.59 0.00 44.43 4.57
3580 5017 1.729517 CACCAACACGATATCGCACAA 59.270 47.619 24.59 0.00 44.43 3.33
3661 5098 0.180406 AAAACATCGAGATCCCCCGG 59.820 55.000 0.00 0.00 0.00 5.73
3664 5101 4.557149 ATCGAGATCCCCCGGCCA 62.557 66.667 2.24 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.294508 CGGAACAACTCAAATTAGGTGGATTT 60.295 38.462 0.00 0.00 38.57 2.17
2 3 4.700213 CGGAACAACTCAAATTAGGTGGAT 59.300 41.667 0.00 0.00 38.57 3.41
3 4 4.069304 CGGAACAACTCAAATTAGGTGGA 58.931 43.478 0.00 0.00 38.57 4.02
4 5 4.069304 TCGGAACAACTCAAATTAGGTGG 58.931 43.478 0.00 0.00 38.57 4.61
5 6 4.755123 AGTCGGAACAACTCAAATTAGGTG 59.245 41.667 0.00 0.00 40.20 4.00
6 7 4.969484 AGTCGGAACAACTCAAATTAGGT 58.031 39.130 0.00 0.00 0.00 3.08
7 8 6.400727 CGTTAGTCGGAACAACTCAAATTAGG 60.401 42.308 2.64 0.00 35.71 2.69
8 9 6.145048 ACGTTAGTCGGAACAACTCAAATTAG 59.855 38.462 0.00 0.00 44.69 1.73
9 10 5.984926 ACGTTAGTCGGAACAACTCAAATTA 59.015 36.000 0.00 0.00 44.69 1.40
10 11 4.812626 ACGTTAGTCGGAACAACTCAAATT 59.187 37.500 0.00 0.00 44.69 1.82
11 12 4.374399 ACGTTAGTCGGAACAACTCAAAT 58.626 39.130 0.00 0.00 44.69 2.32
12 13 3.784338 ACGTTAGTCGGAACAACTCAAA 58.216 40.909 0.00 0.00 44.69 2.69
13 14 3.441496 ACGTTAGTCGGAACAACTCAA 57.559 42.857 0.00 0.00 44.69 3.02
14 15 3.441496 AACGTTAGTCGGAACAACTCA 57.559 42.857 0.00 0.00 44.69 3.41
15 16 5.667156 GCAATAACGTTAGTCGGAACAACTC 60.667 44.000 14.25 0.00 44.69 3.01
16 17 4.151157 GCAATAACGTTAGTCGGAACAACT 59.849 41.667 14.25 0.00 44.69 3.16
17 18 4.388790 GCAATAACGTTAGTCGGAACAAC 58.611 43.478 14.25 0.00 44.69 3.32
18 19 3.432933 GGCAATAACGTTAGTCGGAACAA 59.567 43.478 14.25 0.00 44.69 2.83
19 20 2.995258 GGCAATAACGTTAGTCGGAACA 59.005 45.455 14.25 0.00 44.69 3.18
20 21 3.256558 AGGCAATAACGTTAGTCGGAAC 58.743 45.455 14.25 0.82 44.69 3.62
21 22 3.598019 AGGCAATAACGTTAGTCGGAA 57.402 42.857 14.25 0.00 44.69 4.30
22 23 4.717233 TTAGGCAATAACGTTAGTCGGA 57.283 40.909 14.25 0.00 44.69 4.55
23 24 5.978934 AATTAGGCAATAACGTTAGTCGG 57.021 39.130 14.25 1.57 44.69 4.79
24 25 6.996106 TCAAATTAGGCAATAACGTTAGTCG 58.004 36.000 14.25 7.37 46.00 4.18
25 26 7.971455 ACTCAAATTAGGCAATAACGTTAGTC 58.029 34.615 14.25 2.59 0.00 2.59
26 27 7.916914 ACTCAAATTAGGCAATAACGTTAGT 57.083 32.000 14.25 8.45 0.00 2.24
29 30 8.403236 GGATAACTCAAATTAGGCAATAACGTT 58.597 33.333 5.88 5.88 0.00 3.99
30 31 7.012989 GGGATAACTCAAATTAGGCAATAACGT 59.987 37.037 0.00 0.00 0.00 3.99
31 32 7.360361 GGGATAACTCAAATTAGGCAATAACG 58.640 38.462 0.00 0.00 0.00 3.18
32 33 7.227910 TCGGGATAACTCAAATTAGGCAATAAC 59.772 37.037 0.00 0.00 0.00 1.89
33 34 7.227910 GTCGGGATAACTCAAATTAGGCAATAA 59.772 37.037 0.00 0.00 0.00 1.40
34 35 6.708949 GTCGGGATAACTCAAATTAGGCAATA 59.291 38.462 0.00 0.00 0.00 1.90
35 36 5.531287 GTCGGGATAACTCAAATTAGGCAAT 59.469 40.000 0.00 0.00 0.00 3.56
36 37 4.879545 GTCGGGATAACTCAAATTAGGCAA 59.120 41.667 0.00 0.00 0.00 4.52
37 38 4.448210 GTCGGGATAACTCAAATTAGGCA 58.552 43.478 0.00 0.00 0.00 4.75
38 39 3.493503 CGTCGGGATAACTCAAATTAGGC 59.506 47.826 0.00 0.00 0.00 3.93
39 40 4.940463 TCGTCGGGATAACTCAAATTAGG 58.060 43.478 0.00 0.00 0.00 2.69
40 41 6.507456 CGTTTCGTCGGGATAACTCAAATTAG 60.507 42.308 0.00 0.00 0.00 1.73
41 42 5.289193 CGTTTCGTCGGGATAACTCAAATTA 59.711 40.000 0.00 0.00 0.00 1.40
42 43 4.092383 CGTTTCGTCGGGATAACTCAAATT 59.908 41.667 0.00 0.00 0.00 1.82
43 44 3.615496 CGTTTCGTCGGGATAACTCAAAT 59.385 43.478 0.00 0.00 0.00 2.32
44 45 2.988493 CGTTTCGTCGGGATAACTCAAA 59.012 45.455 0.00 0.00 0.00 2.69
45 46 2.030007 ACGTTTCGTCGGGATAACTCAA 60.030 45.455 0.00 0.00 33.69 3.02
46 47 1.541147 ACGTTTCGTCGGGATAACTCA 59.459 47.619 0.00 0.00 33.69 3.41
47 48 2.268730 ACGTTTCGTCGGGATAACTC 57.731 50.000 0.00 0.00 33.69 3.01
48 49 2.730550 AACGTTTCGTCGGGATAACT 57.269 45.000 0.00 0.00 39.99 2.24
49 50 3.301642 CAGTAACGTTTCGTCGGGATAAC 59.698 47.826 5.91 0.00 39.99 1.89
50 51 3.057596 ACAGTAACGTTTCGTCGGGATAA 60.058 43.478 5.91 0.00 39.99 1.75
51 52 2.487762 ACAGTAACGTTTCGTCGGGATA 59.512 45.455 5.91 0.00 39.99 2.59
52 53 1.270550 ACAGTAACGTTTCGTCGGGAT 59.729 47.619 5.91 0.00 39.99 3.85
53 54 0.667993 ACAGTAACGTTTCGTCGGGA 59.332 50.000 5.91 0.00 39.99 5.14
54 55 1.490621 AACAGTAACGTTTCGTCGGG 58.509 50.000 5.91 0.00 39.99 5.14
55 56 4.690731 TTAAACAGTAACGTTTCGTCGG 57.309 40.909 5.91 0.00 39.99 4.79
56 57 7.004718 GCTTTATTAAACAGTAACGTTTCGTCG 59.995 37.037 5.91 0.00 39.99 5.12
57 58 7.793427 TGCTTTATTAAACAGTAACGTTTCGTC 59.207 33.333 5.91 0.00 39.99 4.20
58 59 7.629130 TGCTTTATTAAACAGTAACGTTTCGT 58.371 30.769 5.91 1.25 43.97 3.85
59 60 8.478527 TTGCTTTATTAAACAGTAACGTTTCG 57.521 30.769 5.91 0.58 39.70 3.46
60 61 9.442033 ACTTGCTTTATTAAACAGTAACGTTTC 57.558 29.630 5.91 0.04 39.70 2.78
61 62 9.228636 CACTTGCTTTATTAAACAGTAACGTTT 57.771 29.630 5.91 0.00 41.78 3.60
62 63 8.400186 ACACTTGCTTTATTAAACAGTAACGTT 58.600 29.630 5.88 5.88 0.00 3.99
63 64 7.853929 CACACTTGCTTTATTAAACAGTAACGT 59.146 33.333 0.00 0.00 0.00 3.99
64 65 7.853929 ACACACTTGCTTTATTAAACAGTAACG 59.146 33.333 0.00 0.00 0.00 3.18
65 66 9.511144 AACACACTTGCTTTATTAAACAGTAAC 57.489 29.630 0.00 0.00 0.00 2.50
67 68 9.509855 CAAACACACTTGCTTTATTAAACAGTA 57.490 29.630 0.00 0.00 0.00 2.74
68 69 7.491048 CCAAACACACTTGCTTTATTAAACAGT 59.509 33.333 0.00 0.00 0.00 3.55
69 70 7.704472 TCCAAACACACTTGCTTTATTAAACAG 59.296 33.333 0.00 0.00 0.00 3.16
70 71 7.489757 GTCCAAACACACTTGCTTTATTAAACA 59.510 33.333 0.00 0.00 0.00 2.83
71 72 7.837505 GTCCAAACACACTTGCTTTATTAAAC 58.162 34.615 0.00 0.00 0.00 2.01
72 73 7.995463 GTCCAAACACACTTGCTTTATTAAA 57.005 32.000 0.00 0.00 0.00 1.52
392 393 1.493950 GAGCATCATCGGCCTGAACG 61.494 60.000 0.00 0.00 33.17 3.95
425 426 4.597215 GGACCCCGATAACGCCCG 62.597 72.222 0.00 0.00 38.29 6.13
456 457 6.769512 ACGCCATCTTCATATACACCTAATT 58.230 36.000 0.00 0.00 0.00 1.40
469 470 5.776173 TCCTTTTAAAAACGCCATCTTCA 57.224 34.783 1.66 0.00 0.00 3.02
470 471 7.471657 TTTTCCTTTTAAAAACGCCATCTTC 57.528 32.000 1.66 0.00 0.00 2.87
478 479 8.203937 ACCCTTTCATTTTCCTTTTAAAAACG 57.796 30.769 1.66 0.00 32.42 3.60
490 494 4.522789 TGGCTGACTTACCCTTTCATTTTC 59.477 41.667 0.00 0.00 0.00 2.29
495 499 2.026262 GGATGGCTGACTTACCCTTTCA 60.026 50.000 0.00 0.00 0.00 2.69
500 504 0.759346 ATCGGATGGCTGACTTACCC 59.241 55.000 0.00 0.00 30.79 3.69
506 510 0.391661 ACACACATCGGATGGCTGAC 60.392 55.000 21.19 0.00 30.79 3.51
515 519 1.268113 GCGCACAAAACACACATCGG 61.268 55.000 0.30 0.00 0.00 4.18
517 521 0.845768 GTGCGCACAAAACACACATC 59.154 50.000 34.52 2.48 34.43 3.06
518 522 0.455410 AGTGCGCACAAAACACACAT 59.545 45.000 39.21 14.41 36.76 3.21
519 523 0.455802 CAGTGCGCACAAAACACACA 60.456 50.000 39.21 0.00 36.76 3.72
520 524 0.455972 ACAGTGCGCACAAAACACAC 60.456 50.000 39.21 12.10 36.76 3.82
521 525 0.179176 GACAGTGCGCACAAAACACA 60.179 50.000 39.21 0.00 36.76 3.72
522 526 1.193665 CGACAGTGCGCACAAAACAC 61.194 55.000 39.21 22.23 34.48 3.32
524 528 1.654137 CCGACAGTGCGCACAAAAC 60.654 57.895 39.21 25.07 0.00 2.43
537 541 0.249120 ATGATCTTCAACCGCCGACA 59.751 50.000 0.00 0.00 0.00 4.35
553 557 3.066190 GCTGCCTGCCTTGCATGA 61.066 61.111 0.00 0.00 38.13 3.07
567 571 4.289379 CGATGTGATGCCGCGCTG 62.289 66.667 5.56 0.00 0.00 5.18
574 578 3.060940 CACGAGTATGAACGATGTGATGC 60.061 47.826 0.00 0.00 32.23 3.91
616 624 9.762062 CATACATCGTGAGAACTGTATATACTC 57.238 37.037 13.89 3.77 41.74 2.59
618 626 7.485277 GCCATACATCGTGAGAACTGTATATAC 59.515 40.741 5.89 5.89 41.74 1.47
619 627 7.535997 GCCATACATCGTGAGAACTGTATATA 58.464 38.462 0.00 0.00 41.74 0.86
620 628 6.390721 GCCATACATCGTGAGAACTGTATAT 58.609 40.000 0.00 0.00 41.74 0.86
621 629 5.562113 CGCCATACATCGTGAGAACTGTATA 60.562 44.000 0.00 0.00 41.74 1.47
622 630 4.621991 GCCATACATCGTGAGAACTGTAT 58.378 43.478 0.00 0.00 43.42 2.29
630 638 0.809636 TTGGCGCCATACATCGTGAG 60.810 55.000 33.25 0.00 0.00 3.51
631 639 1.087202 GTTGGCGCCATACATCGTGA 61.087 55.000 33.25 9.15 0.00 4.35
654 662 2.738521 CGGTGTCGCTGTCAAGGG 60.739 66.667 0.00 0.00 37.70 3.95
683 691 1.661821 GTCTCGTGCGTCTTGTGCT 60.662 57.895 0.00 0.00 0.00 4.40
684 692 2.658707 GGTCTCGTGCGTCTTGTGC 61.659 63.158 0.00 0.00 0.00 4.57
707 715 2.258591 CACGAGTCCGGTCCTGTG 59.741 66.667 0.00 3.81 40.78 3.66
773 784 7.119360 GGCCACGATTTTTAATTACTACGTAC 58.881 38.462 0.00 0.00 0.00 3.67
774 785 6.815641 TGGCCACGATTTTTAATTACTACGTA 59.184 34.615 0.00 0.00 0.00 3.57
775 786 5.642919 TGGCCACGATTTTTAATTACTACGT 59.357 36.000 0.00 0.00 0.00 3.57
776 787 6.109320 TGGCCACGATTTTTAATTACTACG 57.891 37.500 0.00 0.00 0.00 3.51
777 788 7.754625 TCTTGGCCACGATTTTTAATTACTAC 58.245 34.615 3.88 0.00 0.00 2.73
778 789 7.925043 TCTTGGCCACGATTTTTAATTACTA 57.075 32.000 3.88 0.00 0.00 1.82
779 790 6.827586 TCTTGGCCACGATTTTTAATTACT 57.172 33.333 3.88 0.00 0.00 2.24
780 791 7.088272 ACTTCTTGGCCACGATTTTTAATTAC 58.912 34.615 13.43 0.00 0.00 1.89
784 795 4.022676 GGACTTCTTGGCCACGATTTTTAA 60.023 41.667 13.43 0.00 45.54 1.52
853 874 1.529152 ATGTGCCTGTACGTGACCGA 61.529 55.000 0.00 0.00 37.88 4.69
857 878 0.246360 CTGGATGTGCCTGTACGTGA 59.754 55.000 0.00 0.00 37.63 4.35
858 879 0.246360 TCTGGATGTGCCTGTACGTG 59.754 55.000 0.00 0.00 36.96 4.49
859 880 0.532573 CTCTGGATGTGCCTGTACGT 59.467 55.000 0.00 0.00 36.96 3.57
860 881 0.807667 GCTCTGGATGTGCCTGTACG 60.808 60.000 0.00 0.00 36.96 3.67
861 882 3.071580 GCTCTGGATGTGCCTGTAC 57.928 57.895 0.00 0.00 36.96 2.90
867 888 2.827642 GCTGGGCTCTGGATGTGC 60.828 66.667 0.00 0.00 34.70 4.57
869 890 2.611800 TGGCTGGGCTCTGGATGT 60.612 61.111 0.00 0.00 0.00 3.06
870 891 2.124403 GTGGCTGGGCTCTGGATG 60.124 66.667 0.00 0.00 0.00 3.51
871 892 3.790437 CGTGGCTGGGCTCTGGAT 61.790 66.667 0.00 0.00 0.00 3.41
884 905 2.655364 CGATCTAGCCGTGCGTGG 60.655 66.667 0.00 0.00 0.00 4.94
885 906 1.472276 GAACGATCTAGCCGTGCGTG 61.472 60.000 10.05 0.00 40.44 5.34
886 907 1.226603 GAACGATCTAGCCGTGCGT 60.227 57.895 10.05 0.00 40.44 5.24
887 908 3.601981 GAACGATCTAGCCGTGCG 58.398 61.111 10.05 0.00 40.44 5.34
888 909 0.801067 AACGAACGATCTAGCCGTGC 60.801 55.000 10.05 7.81 40.44 5.34
891 912 1.904144 TTGAACGAACGATCTAGCCG 58.096 50.000 0.14 3.36 0.00 5.52
894 915 4.791676 TGAACGATTGAACGAACGATCTAG 59.208 41.667 0.14 0.00 37.03 2.43
897 918 3.965209 TGAACGATTGAACGAACGATC 57.035 42.857 0.14 0.00 37.03 3.69
901 922 3.432252 ACCAGATGAACGATTGAACGAAC 59.568 43.478 0.00 0.00 37.03 3.95
902 923 3.659786 ACCAGATGAACGATTGAACGAA 58.340 40.909 0.00 0.00 37.03 3.85
903 924 3.313012 ACCAGATGAACGATTGAACGA 57.687 42.857 0.00 0.00 37.03 3.85
904 925 4.803613 TGATACCAGATGAACGATTGAACG 59.196 41.667 0.00 0.00 39.31 3.95
905 926 5.276395 CGTGATACCAGATGAACGATTGAAC 60.276 44.000 0.00 0.00 33.03 3.18
906 927 4.803613 CGTGATACCAGATGAACGATTGAA 59.196 41.667 0.00 0.00 33.03 2.69
908 929 3.060272 GCGTGATACCAGATGAACGATTG 60.060 47.826 0.00 0.00 33.03 2.67
909 930 3.123804 GCGTGATACCAGATGAACGATT 58.876 45.455 0.00 0.00 33.03 3.34
910 931 2.100749 TGCGTGATACCAGATGAACGAT 59.899 45.455 0.00 0.00 33.03 3.73
911 932 1.474879 TGCGTGATACCAGATGAACGA 59.525 47.619 0.00 0.00 33.03 3.85
913 934 3.546815 GCAATGCGTGATACCAGATGAAC 60.547 47.826 0.00 0.00 0.00 3.18
914 935 2.613595 GCAATGCGTGATACCAGATGAA 59.386 45.455 0.00 0.00 0.00 2.57
915 936 2.212652 GCAATGCGTGATACCAGATGA 58.787 47.619 0.00 0.00 0.00 2.92
1973 2420 2.202797 CCTCATCCGCTGTGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
1974 2421 1.142748 CTCCTCATCCGCTGTGTCC 59.857 63.158 0.00 0.00 0.00 4.02
1975 2422 1.142748 CCTCCTCATCCGCTGTGTC 59.857 63.158 0.00 0.00 0.00 3.67
1976 2423 0.904865 TTCCTCCTCATCCGCTGTGT 60.905 55.000 0.00 0.00 0.00 3.72
1977 2424 0.179089 CTTCCTCCTCATCCGCTGTG 60.179 60.000 0.00 0.00 0.00 3.66
1980 2427 0.260230 TCTCTTCCTCCTCATCCGCT 59.740 55.000 0.00 0.00 0.00 5.52
1982 2429 2.360801 GTCTTCTCTTCCTCCTCATCCG 59.639 54.545 0.00 0.00 0.00 4.18
1983 2430 2.360801 CGTCTTCTCTTCCTCCTCATCC 59.639 54.545 0.00 0.00 0.00 3.51
1984 2431 3.283751 TCGTCTTCTCTTCCTCCTCATC 58.716 50.000 0.00 0.00 0.00 2.92
1985 2432 3.374042 TCGTCTTCTCTTCCTCCTCAT 57.626 47.619 0.00 0.00 0.00 2.90
1986 2433 2.881111 TCGTCTTCTCTTCCTCCTCA 57.119 50.000 0.00 0.00 0.00 3.86
1987 2434 2.360801 CCATCGTCTTCTCTTCCTCCTC 59.639 54.545 0.00 0.00 0.00 3.71
1988 2435 2.291930 ACCATCGTCTTCTCTTCCTCCT 60.292 50.000 0.00 0.00 0.00 3.69
1989 2436 2.104170 ACCATCGTCTTCTCTTCCTCC 58.896 52.381 0.00 0.00 0.00 4.30
1995 2442 0.965866 TCGCCACCATCGTCTTCTCT 60.966 55.000 0.00 0.00 0.00 3.10
2144 2591 3.558411 GCATCGAGGTGAGCACGC 61.558 66.667 0.00 0.00 0.00 5.34
2189 2636 3.461982 GCGTCGTGTGAGCGTGAG 61.462 66.667 0.00 0.00 0.00 3.51
2209 2656 4.077188 GGTGTCAGACGCTTGCGC 62.077 66.667 15.21 0.00 0.00 6.09
2210 2657 3.414700 GGGTGTCAGACGCTTGCG 61.415 66.667 13.83 13.70 34.65 4.85
2211 2658 3.414700 CGGGTGTCAGACGCTTGC 61.415 66.667 13.83 0.00 35.34 4.01
2212 2659 2.738521 CCGGGTGTCAGACGCTTG 60.739 66.667 13.83 6.61 35.34 4.01
2213 2660 4.003788 CCCGGGTGTCAGACGCTT 62.004 66.667 14.18 0.00 35.34 4.68
2240 2687 4.485208 GCTTACGTGCGCGACTGC 62.485 66.667 28.73 21.01 42.00 4.40
2286 2733 1.721926 GTGACGAAAGGAGAAGCGAAG 59.278 52.381 0.00 0.00 0.00 3.79
2312 2759 7.164122 TGCTATTCACAGAAAGAAAGACTGAT 58.836 34.615 0.00 0.00 35.85 2.90
2316 2763 7.065085 TGCTATGCTATTCACAGAAAGAAAGAC 59.935 37.037 0.00 0.00 0.00 3.01
2350 2797 2.475487 GCACAACTGGAGTTCGTTCTAC 59.525 50.000 0.00 0.00 35.83 2.59
2351 2798 2.101750 TGCACAACTGGAGTTCGTTCTA 59.898 45.455 0.00 0.00 35.83 2.10
2352 2799 1.134521 TGCACAACTGGAGTTCGTTCT 60.135 47.619 0.00 0.00 35.83 3.01
2353 2800 1.261619 CTGCACAACTGGAGTTCGTTC 59.738 52.381 0.00 0.00 35.83 3.95
2354 2801 1.299541 CTGCACAACTGGAGTTCGTT 58.700 50.000 0.00 0.00 35.83 3.85
2355 2802 0.178068 ACTGCACAACTGGAGTTCGT 59.822 50.000 0.00 0.00 46.30 3.85
2356 2803 2.061773 CTACTGCACAACTGGAGTTCG 58.938 52.381 0.00 0.00 46.30 3.95
2395 2846 7.931578 TCTACTGGTCTTTTCTCAACAAAAA 57.068 32.000 0.00 0.00 0.00 1.94
2396 2847 9.273016 CTATCTACTGGTCTTTTCTCAACAAAA 57.727 33.333 0.00 0.00 0.00 2.44
2397 2848 7.878127 CCTATCTACTGGTCTTTTCTCAACAAA 59.122 37.037 0.00 0.00 0.00 2.83
2398 2849 7.016268 ACCTATCTACTGGTCTTTTCTCAACAA 59.984 37.037 0.00 0.00 29.18 2.83
2399 2850 6.497259 ACCTATCTACTGGTCTTTTCTCAACA 59.503 38.462 0.00 0.00 29.18 3.33
2400 2851 6.937392 ACCTATCTACTGGTCTTTTCTCAAC 58.063 40.000 0.00 0.00 29.18 3.18
2401 2852 7.342284 CCTACCTATCTACTGGTCTTTTCTCAA 59.658 40.741 0.00 0.00 37.74 3.02
2402 2853 6.834451 CCTACCTATCTACTGGTCTTTTCTCA 59.166 42.308 0.00 0.00 37.74 3.27
2403 2854 7.061688 TCCTACCTATCTACTGGTCTTTTCTC 58.938 42.308 0.00 0.00 37.74 2.87
2404 2855 6.982899 TCCTACCTATCTACTGGTCTTTTCT 58.017 40.000 0.00 0.00 37.74 2.52
2405 2856 6.239092 GCTCCTACCTATCTACTGGTCTTTTC 60.239 46.154 0.00 0.00 37.74 2.29
2406 2857 5.599242 GCTCCTACCTATCTACTGGTCTTTT 59.401 44.000 0.00 0.00 37.74 2.27
2407 2858 5.103430 AGCTCCTACCTATCTACTGGTCTTT 60.103 44.000 0.00 0.00 37.74 2.52
2408 2859 4.417518 AGCTCCTACCTATCTACTGGTCTT 59.582 45.833 0.00 0.00 37.74 3.01
2409 2860 3.984770 AGCTCCTACCTATCTACTGGTCT 59.015 47.826 0.00 0.00 37.74 3.85
2410 2861 4.076394 CAGCTCCTACCTATCTACTGGTC 58.924 52.174 0.00 0.00 37.74 4.02
2411 2862 3.722627 TCAGCTCCTACCTATCTACTGGT 59.277 47.826 0.00 0.00 40.12 4.00
2412 2863 4.042311 TCTCAGCTCCTACCTATCTACTGG 59.958 50.000 0.00 0.00 0.00 4.00
2413 2864 5.221843 ACTCTCAGCTCCTACCTATCTACTG 60.222 48.000 0.00 0.00 0.00 2.74
2414 2865 4.911522 ACTCTCAGCTCCTACCTATCTACT 59.088 45.833 0.00 0.00 0.00 2.57
2415 2866 5.237236 ACTCTCAGCTCCTACCTATCTAC 57.763 47.826 0.00 0.00 0.00 2.59
2416 2867 6.324544 TCTACTCTCAGCTCCTACCTATCTA 58.675 44.000 0.00 0.00 0.00 1.98
2417 2868 5.159637 TCTACTCTCAGCTCCTACCTATCT 58.840 45.833 0.00 0.00 0.00 1.98
2418 2869 5.492855 TCTACTCTCAGCTCCTACCTATC 57.507 47.826 0.00 0.00 0.00 2.08
2419 2870 5.609284 TCTTCTACTCTCAGCTCCTACCTAT 59.391 44.000 0.00 0.00 0.00 2.57
2420 2871 4.969999 TCTTCTACTCTCAGCTCCTACCTA 59.030 45.833 0.00 0.00 0.00 3.08
2421 2872 3.783642 TCTTCTACTCTCAGCTCCTACCT 59.216 47.826 0.00 0.00 0.00 3.08
2422 2873 3.881089 GTCTTCTACTCTCAGCTCCTACC 59.119 52.174 0.00 0.00 0.00 3.18
2423 2874 4.777463 AGTCTTCTACTCTCAGCTCCTAC 58.223 47.826 0.00 0.00 30.33 3.18
2459 2910 3.085952 ACATCATCCGTTGGATTGGTT 57.914 42.857 0.00 0.00 39.79 3.67
2460 2911 2.806945 ACATCATCCGTTGGATTGGT 57.193 45.000 0.00 0.00 39.79 3.67
2498 2949 6.563381 CGCTACCGCTACAAATAATAAGGTTG 60.563 42.308 0.00 0.00 32.47 3.77
2502 2953 5.461078 ACACGCTACCGCTACAAATAATAAG 59.539 40.000 0.00 0.00 38.22 1.73
2516 2967 3.303495 CACATCTTTTCTACACGCTACCG 59.697 47.826 0.00 0.00 41.14 4.02
2528 2979 6.925165 TCTTTTCAATTCCTGCACATCTTTTC 59.075 34.615 0.00 0.00 0.00 2.29
2555 3006 2.411069 CACGTTTCTCATCTGAGTGCTG 59.589 50.000 7.07 0.34 42.60 4.41
2708 3168 4.502604 GGTGGTAGCCAATACGTGATGTAT 60.503 45.833 0.00 0.00 45.81 2.29
2709 3169 3.181473 GGTGGTAGCCAATACGTGATGTA 60.181 47.826 0.00 0.00 34.18 2.29
2710 3170 2.419574 GGTGGTAGCCAATACGTGATGT 60.420 50.000 0.00 0.00 34.18 3.06
2711 3171 2.210116 GGTGGTAGCCAATACGTGATG 58.790 52.381 0.00 0.00 34.18 3.07
2712 3172 1.834896 TGGTGGTAGCCAATACGTGAT 59.165 47.619 0.00 0.00 34.18 3.06
2713 3173 1.268066 TGGTGGTAGCCAATACGTGA 58.732 50.000 0.00 0.00 34.18 4.35
2714 3174 1.939934 CATGGTGGTAGCCAATACGTG 59.060 52.381 0.00 0.00 42.48 4.49
2772 3310 2.202492 CAGACGACGCCGAGGAAG 60.202 66.667 0.00 0.00 39.50 3.46
2773 3311 4.415332 GCAGACGACGCCGAGGAA 62.415 66.667 0.00 0.00 39.50 3.36
2784 3356 0.788995 CAGCTCTTCTTGTGCAGACG 59.211 55.000 0.00 0.00 37.61 4.18
2785 3357 1.155042 CCAGCTCTTCTTGTGCAGAC 58.845 55.000 0.00 0.00 37.61 3.51
2786 3358 0.035881 CCCAGCTCTTCTTGTGCAGA 59.964 55.000 0.00 0.00 37.61 4.26
2788 3360 1.073722 CCCCAGCTCTTCTTGTGCA 59.926 57.895 0.00 0.00 37.61 4.57
2790 3362 1.747709 CATCCCCAGCTCTTCTTGTG 58.252 55.000 0.00 0.00 0.00 3.33
2791 3363 0.034670 GCATCCCCAGCTCTTCTTGT 60.035 55.000 0.00 0.00 0.00 3.16
2792 3364 0.034767 TGCATCCCCAGCTCTTCTTG 60.035 55.000 0.00 0.00 0.00 3.02
2794 3366 0.473326 GATGCATCCCCAGCTCTTCT 59.527 55.000 16.23 0.00 0.00 2.85
2795 3367 0.182061 TGATGCATCCCCAGCTCTTC 59.818 55.000 23.67 0.00 0.00 2.87
2796 3368 0.851469 ATGATGCATCCCCAGCTCTT 59.149 50.000 23.67 0.00 0.00 2.85
2797 3369 0.110678 CATGATGCATCCCCAGCTCT 59.889 55.000 23.67 0.00 0.00 4.09
2798 3370 1.524863 GCATGATGCATCCCCAGCTC 61.525 60.000 23.67 0.00 44.26 4.09
2799 3371 1.530891 GCATGATGCATCCCCAGCT 60.531 57.895 23.67 0.00 44.26 4.24
2800 3372 3.048602 GCATGATGCATCCCCAGC 58.951 61.111 23.67 17.03 44.26 4.85
2808 3380 3.790899 TCGTCGTCGATGCATGATGCA 62.791 52.381 23.54 23.54 45.56 3.96
2809 3381 1.200103 CGTCGTCGATGCATGATGC 59.800 57.895 11.12 11.12 40.93 3.91
2810 3382 2.872028 TCGTCGTCGATGCATGATG 58.128 52.632 2.46 7.92 41.35 3.07
2822 3394 0.038526 AGACAAAAGGCGATCGTCGT 60.039 50.000 17.81 10.14 42.81 4.34
2823 3395 1.068474 AAGACAAAAGGCGATCGTCG 58.932 50.000 17.81 3.71 43.89 5.12
2825 3397 1.531149 CACAAGACAAAAGGCGATCGT 59.469 47.619 17.81 0.00 0.00 3.73
2828 3400 3.189287 GTCATCACAAGACAAAAGGCGAT 59.811 43.478 0.00 0.00 36.06 4.58
2831 3403 2.029918 GGGTCATCACAAGACAAAAGGC 60.030 50.000 0.00 0.00 37.74 4.35
2832 3404 2.226437 CGGGTCATCACAAGACAAAAGG 59.774 50.000 0.00 0.00 37.74 3.11
2834 3406 3.138304 CTCGGGTCATCACAAGACAAAA 58.862 45.455 0.00 0.00 37.74 2.44
2835 3407 2.104111 ACTCGGGTCATCACAAGACAAA 59.896 45.455 0.00 0.00 37.74 2.83
2836 3408 1.691976 ACTCGGGTCATCACAAGACAA 59.308 47.619 0.00 0.00 37.74 3.18
2837 3409 1.338107 ACTCGGGTCATCACAAGACA 58.662 50.000 0.00 0.00 37.74 3.41
2838 3410 2.069273 CAACTCGGGTCATCACAAGAC 58.931 52.381 0.00 0.00 35.29 3.01
2839 3411 1.691976 ACAACTCGGGTCATCACAAGA 59.308 47.619 0.00 0.00 0.00 3.02
2842 3414 0.320374 GGACAACTCGGGTCATCACA 59.680 55.000 0.00 0.00 37.00 3.58
2844 3416 0.608130 CTGGACAACTCGGGTCATCA 59.392 55.000 0.00 0.00 37.00 3.07
2845 3417 0.608640 ACTGGACAACTCGGGTCATC 59.391 55.000 0.00 0.00 37.00 2.92
2846 3418 0.321671 CACTGGACAACTCGGGTCAT 59.678 55.000 0.00 0.00 37.00 3.06
2847 3419 1.745890 CACTGGACAACTCGGGTCA 59.254 57.895 0.00 0.00 37.00 4.02
2848 3420 1.004918 CCACTGGACAACTCGGGTC 60.005 63.158 0.00 0.00 34.52 4.46
2850 3422 1.301716 CACCACTGGACAACTCGGG 60.302 63.158 0.71 0.00 0.00 5.14
2859 3564 0.401395 AAAGGGTCTCCACCACTGGA 60.401 55.000 0.71 0.00 45.94 3.86
2861 3566 1.545651 GGAAAAGGGTCTCCACCACTG 60.546 57.143 0.00 0.00 45.94 3.66
2910 3638 4.052229 ACGGAAGTGCGACGAGGG 62.052 66.667 0.00 0.00 46.97 4.30
2921 3649 2.317609 CGCAGGTGTGGAACGGAAG 61.318 63.158 0.00 0.00 42.39 3.46
2922 3650 2.280524 CGCAGGTGTGGAACGGAA 60.281 61.111 0.00 0.00 42.39 4.30
2923 3651 3.220999 CTCGCAGGTGTGGAACGGA 62.221 63.158 0.00 0.00 42.39 4.69
2924 3652 2.738521 CTCGCAGGTGTGGAACGG 60.739 66.667 0.00 0.00 42.39 4.44
2925 3653 3.414700 GCTCGCAGGTGTGGAACG 61.415 66.667 0.00 0.00 42.39 3.95
2926 3654 3.414700 CGCTCGCAGGTGTGGAAC 61.415 66.667 0.00 0.00 37.35 3.62
2927 3655 2.942796 ATCGCTCGCAGGTGTGGAA 61.943 57.895 0.00 0.00 0.00 3.53
2928 3656 3.381983 ATCGCTCGCAGGTGTGGA 61.382 61.111 0.00 0.00 0.00 4.02
2929 3657 3.190849 CATCGCTCGCAGGTGTGG 61.191 66.667 0.00 0.00 0.00 4.17
2930 3658 3.857854 GCATCGCTCGCAGGTGTG 61.858 66.667 0.00 0.00 0.00 3.82
2933 3661 3.899981 TTTGGCATCGCTCGCAGGT 62.900 57.895 0.00 0.00 0.00 4.00
2934 3662 2.588146 CTTTTGGCATCGCTCGCAGG 62.588 60.000 0.00 0.00 0.00 4.85
2935 3663 1.226211 CTTTTGGCATCGCTCGCAG 60.226 57.895 0.00 0.00 0.00 5.18
2936 3664 2.689785 CCTTTTGGCATCGCTCGCA 61.690 57.895 0.00 0.00 0.00 5.10
2937 3665 2.100991 CCTTTTGGCATCGCTCGC 59.899 61.111 0.00 0.00 0.00 5.03
2947 3675 2.259511 GCTGCTTCCGCCTTTTGG 59.740 61.111 0.00 0.00 44.18 3.28
2948 3676 1.372128 GTGCTGCTTCCGCCTTTTG 60.372 57.895 0.00 0.00 34.43 2.44
2949 3677 2.564721 GGTGCTGCTTCCGCCTTTT 61.565 57.895 0.00 0.00 34.43 2.27
2950 3678 2.985847 GGTGCTGCTTCCGCCTTT 60.986 61.111 0.00 0.00 34.43 3.11
2951 3679 3.790416 TTGGTGCTGCTTCCGCCTT 62.790 57.895 0.00 0.00 34.02 4.35
2952 3680 4.269523 TTGGTGCTGCTTCCGCCT 62.270 61.111 0.00 0.00 34.02 5.52
2953 3681 4.043200 GTTGGTGCTGCTTCCGCC 62.043 66.667 0.00 0.00 34.43 6.13
2954 3682 2.533391 GATGTTGGTGCTGCTTCCGC 62.533 60.000 0.00 2.25 0.00 5.54
2955 3683 1.236616 TGATGTTGGTGCTGCTTCCG 61.237 55.000 0.00 0.00 0.00 4.30
2956 3684 0.524862 CTGATGTTGGTGCTGCTTCC 59.475 55.000 0.00 4.36 0.00 3.46
2957 3685 0.524862 CCTGATGTTGGTGCTGCTTC 59.475 55.000 0.00 0.00 0.00 3.86
2958 3686 0.111061 TCCTGATGTTGGTGCTGCTT 59.889 50.000 0.00 0.00 0.00 3.91
2962 3690 0.994247 TGGATCCTGATGTTGGTGCT 59.006 50.000 14.23 0.00 0.00 4.40
2965 3693 2.269023 TCAGTGGATCCTGATGTTGGT 58.731 47.619 14.23 0.00 36.57 3.67
2994 3722 7.535139 TGATCTGTGTTCGTTTCTTTCTTTTT 58.465 30.769 0.00 0.00 0.00 1.94
2996 3724 6.677781 TGATCTGTGTTCGTTTCTTTCTTT 57.322 33.333 0.00 0.00 0.00 2.52
2997 3725 6.483307 TCATGATCTGTGTTCGTTTCTTTCTT 59.517 34.615 0.00 0.00 0.00 2.52
2998 3726 5.991606 TCATGATCTGTGTTCGTTTCTTTCT 59.008 36.000 0.00 0.00 0.00 2.52
2999 3727 6.228273 TCATGATCTGTGTTCGTTTCTTTC 57.772 37.500 0.00 0.00 0.00 2.62
3002 3730 4.872691 GGATCATGATCTGTGTTCGTTTCT 59.127 41.667 29.85 0.00 37.92 2.52
3003 3731 4.631377 TGGATCATGATCTGTGTTCGTTTC 59.369 41.667 29.85 12.81 37.92 2.78
3004 3732 4.393062 GTGGATCATGATCTGTGTTCGTTT 59.607 41.667 29.85 0.00 37.92 3.60
3009 3737 4.831674 TCAGTGGATCATGATCTGTGTT 57.168 40.909 29.85 12.50 37.92 3.32
3010 3738 4.019950 TGTTCAGTGGATCATGATCTGTGT 60.020 41.667 29.85 13.31 37.92 3.72
3011 3739 4.510571 TGTTCAGTGGATCATGATCTGTG 58.489 43.478 29.85 23.54 37.92 3.66
3013 3741 7.281549 TGTTAATGTTCAGTGGATCATGATCTG 59.718 37.037 29.85 21.80 37.92 2.90
3014 3742 7.341030 TGTTAATGTTCAGTGGATCATGATCT 58.659 34.615 29.85 12.18 37.92 2.75
3015 3743 7.281774 ACTGTTAATGTTCAGTGGATCATGATC 59.718 37.037 24.90 24.90 42.30 2.92
3016 3744 7.114754 ACTGTTAATGTTCAGTGGATCATGAT 58.885 34.615 8.25 8.25 42.30 2.45
3017 3745 6.475504 ACTGTTAATGTTCAGTGGATCATGA 58.524 36.000 0.00 0.00 42.30 3.07
3020 3748 6.371548 GCTTACTGTTAATGTTCAGTGGATCA 59.628 38.462 6.69 0.00 43.46 2.92
3021 3749 6.371548 TGCTTACTGTTAATGTTCAGTGGATC 59.628 38.462 6.69 0.00 43.46 3.36
3022 3750 6.149474 GTGCTTACTGTTAATGTTCAGTGGAT 59.851 38.462 6.69 0.00 43.46 3.41
3023 3751 5.468746 GTGCTTACTGTTAATGTTCAGTGGA 59.531 40.000 6.69 0.00 43.46 4.02
3026 3754 7.442656 AGTAGTGCTTACTGTTAATGTTCAGT 58.557 34.615 0.00 0.00 45.21 3.41
3027 3755 7.891183 AGTAGTGCTTACTGTTAATGTTCAG 57.109 36.000 1.40 0.00 41.10 3.02
3029 3757 8.436200 CAGAAGTAGTGCTTACTGTTAATGTTC 58.564 37.037 0.00 0.00 41.80 3.18
3030 3758 7.095187 GCAGAAGTAGTGCTTACTGTTAATGTT 60.095 37.037 15.96 0.00 41.80 2.71
3031 3759 6.369065 GCAGAAGTAGTGCTTACTGTTAATGT 59.631 38.462 15.96 0.00 41.80 2.71
3032 3760 6.766084 GCAGAAGTAGTGCTTACTGTTAATG 58.234 40.000 15.96 1.01 41.80 1.90
3033 3761 6.969828 GCAGAAGTAGTGCTTACTGTTAAT 57.030 37.500 15.96 0.00 41.80 1.40
3044 3772 4.399934 AGGAGTAGTTAGCAGAAGTAGTGC 59.600 45.833 5.10 5.10 41.54 4.40
3045 3773 6.598457 TGTAGGAGTAGTTAGCAGAAGTAGTG 59.402 42.308 0.00 0.00 0.00 2.74
3046 3774 6.719301 TGTAGGAGTAGTTAGCAGAAGTAGT 58.281 40.000 0.00 0.00 0.00 2.73
3047 3775 7.811117 ATGTAGGAGTAGTTAGCAGAAGTAG 57.189 40.000 0.00 0.00 0.00 2.57
3049 3777 7.348033 ACTATGTAGGAGTAGTTAGCAGAAGT 58.652 38.462 0.00 0.00 0.00 3.01
3050 3778 7.811117 ACTATGTAGGAGTAGTTAGCAGAAG 57.189 40.000 0.00 0.00 0.00 2.85
3051 3779 9.863650 AATACTATGTAGGAGTAGTTAGCAGAA 57.136 33.333 0.00 0.00 33.03 3.02
3062 3790 8.545472 TGGTGCTTAAAAATACTATGTAGGAGT 58.455 33.333 0.00 0.00 0.00 3.85
3065 3793 8.732746 AGTGGTGCTTAAAAATACTATGTAGG 57.267 34.615 0.00 0.00 0.00 3.18
3071 3799 9.352191 TGGTAAAAGTGGTGCTTAAAAATACTA 57.648 29.630 0.00 0.00 36.17 1.82
3081 3809 8.184304 TGTTTATTATGGTAAAAGTGGTGCTT 57.816 30.769 0.00 0.00 39.52 3.91
3082 3810 7.768807 TGTTTATTATGGTAAAAGTGGTGCT 57.231 32.000 0.00 0.00 0.00 4.40
3094 3822 7.931578 TTCCGTGATCTTTGTTTATTATGGT 57.068 32.000 0.00 0.00 0.00 3.55
3095 3823 7.432252 GCTTTCCGTGATCTTTGTTTATTATGG 59.568 37.037 0.00 0.00 0.00 2.74
3096 3824 8.184192 AGCTTTCCGTGATCTTTGTTTATTATG 58.816 33.333 0.00 0.00 0.00 1.90
3097 3825 8.184192 CAGCTTTCCGTGATCTTTGTTTATTAT 58.816 33.333 0.00 0.00 0.00 1.28
3099 3827 6.206634 TCAGCTTTCCGTGATCTTTGTTTATT 59.793 34.615 0.00 0.00 0.00 1.40
3101 3829 5.060506 TCAGCTTTCCGTGATCTTTGTTTA 58.939 37.500 0.00 0.00 0.00 2.01
3102 3830 3.882888 TCAGCTTTCCGTGATCTTTGTTT 59.117 39.130 0.00 0.00 0.00 2.83
3103 3831 3.476552 TCAGCTTTCCGTGATCTTTGTT 58.523 40.909 0.00 0.00 0.00 2.83
3104 3832 3.126001 TCAGCTTTCCGTGATCTTTGT 57.874 42.857 0.00 0.00 0.00 2.83
3108 3836 1.065926 TGCATCAGCTTTCCGTGATCT 60.066 47.619 0.00 0.00 42.74 2.75
3110 3838 1.376543 CTGCATCAGCTTTCCGTGAT 58.623 50.000 0.00 0.00 42.74 3.06
3121 3849 0.885879 TGCTGAAAAGGCTGCATCAG 59.114 50.000 16.04 16.04 41.69 2.90
3122 3850 0.599558 GTGCTGAAAAGGCTGCATCA 59.400 50.000 0.50 0.00 43.12 3.07
3123 3851 0.886563 AGTGCTGAAAAGGCTGCATC 59.113 50.000 0.50 0.00 43.12 3.91
3124 3852 2.205022 TAGTGCTGAAAAGGCTGCAT 57.795 45.000 0.50 0.00 43.12 3.96
3126 3854 3.192212 AGAAATAGTGCTGAAAAGGCTGC 59.808 43.478 0.00 0.00 0.00 5.25
3127 3855 6.690194 ATAGAAATAGTGCTGAAAAGGCTG 57.310 37.500 0.00 0.00 0.00 4.85
3129 3857 6.319911 AGGAATAGAAATAGTGCTGAAAAGGC 59.680 38.462 0.00 0.00 0.00 4.35
3131 3859 9.383519 TGTAGGAATAGAAATAGTGCTGAAAAG 57.616 33.333 0.00 0.00 0.00 2.27
3132 3860 9.905713 ATGTAGGAATAGAAATAGTGCTGAAAA 57.094 29.630 0.00 0.00 0.00 2.29
3136 3864 9.988815 AACTATGTAGGAATAGAAATAGTGCTG 57.011 33.333 0.00 0.00 34.73 4.41
3152 3880 9.687210 GGTAAAAGGTTTGAAAAACTATGTAGG 57.313 33.333 0.00 0.00 34.15 3.18
3164 4404 8.934023 ATCTTGTCTATGGTAAAAGGTTTGAA 57.066 30.769 0.00 0.00 0.00 2.69
3166 4406 7.393234 TGGATCTTGTCTATGGTAAAAGGTTTG 59.607 37.037 0.00 0.00 0.00 2.93
3178 4418 5.757320 GGACTCATGTTGGATCTTGTCTATG 59.243 44.000 0.00 0.00 0.00 2.23
3180 4420 5.026121 AGGACTCATGTTGGATCTTGTCTA 58.974 41.667 0.00 0.00 0.00 2.59
3182 4422 4.187694 GAGGACTCATGTTGGATCTTGTC 58.812 47.826 0.00 0.00 0.00 3.18
3183 4423 3.054802 GGAGGACTCATGTTGGATCTTGT 60.055 47.826 1.32 0.00 0.00 3.16
3184 4424 3.199508 AGGAGGACTCATGTTGGATCTTG 59.800 47.826 1.32 0.00 0.00 3.02
3187 4427 4.742138 GCTTAGGAGGACTCATGTTGGATC 60.742 50.000 1.32 0.00 0.00 3.36
3201 4441 0.034186 TGGTTGGCATGCTTAGGAGG 60.034 55.000 18.92 0.00 0.00 4.30
3205 4445 1.098050 GGACTGGTTGGCATGCTTAG 58.902 55.000 18.92 10.99 0.00 2.18
3208 4448 1.153524 TTGGACTGGTTGGCATGCT 59.846 52.632 18.92 0.00 0.00 3.79
3209 4449 1.290009 GTTGGACTGGTTGGCATGC 59.710 57.895 9.90 9.90 0.00 4.06
3210 4450 1.039068 TTGTTGGACTGGTTGGCATG 58.961 50.000 0.00 0.00 0.00 4.06
3214 4629 3.004734 GTCAGAATTGTTGGACTGGTTGG 59.995 47.826 0.00 0.00 0.00 3.77
3223 4638 4.003648 GTCCTACCAGTCAGAATTGTTGG 58.996 47.826 0.00 0.00 36.70 3.77
3224 4639 4.641396 TGTCCTACCAGTCAGAATTGTTG 58.359 43.478 0.00 0.00 0.00 3.33
3230 4645 2.009681 TGCTGTCCTACCAGTCAGAA 57.990 50.000 0.00 0.00 34.84 3.02
3236 4651 3.006967 AGTGTACTTTGCTGTCCTACCAG 59.993 47.826 0.00 0.00 35.49 4.00
3247 4662 6.539649 TGTTGTATGAGAAGTGTACTTTGC 57.460 37.500 0.00 0.00 36.11 3.68
3252 4667 4.627467 CCAGCTGTTGTATGAGAAGTGTAC 59.373 45.833 13.81 0.00 0.00 2.90
3253 4668 4.283467 ACCAGCTGTTGTATGAGAAGTGTA 59.717 41.667 13.81 0.00 0.00 2.90
3254 4669 3.071602 ACCAGCTGTTGTATGAGAAGTGT 59.928 43.478 13.81 0.00 0.00 3.55
3255 4670 3.668447 ACCAGCTGTTGTATGAGAAGTG 58.332 45.455 13.81 0.00 0.00 3.16
3256 4671 4.202357 TGAACCAGCTGTTGTATGAGAAGT 60.202 41.667 13.81 0.00 37.29 3.01
3257 4672 4.318332 TGAACCAGCTGTTGTATGAGAAG 58.682 43.478 13.81 0.00 37.29 2.85
3259 4674 3.324846 ACTGAACCAGCTGTTGTATGAGA 59.675 43.478 13.81 0.00 37.29 3.27
3261 4676 3.402110 CACTGAACCAGCTGTTGTATGA 58.598 45.455 13.81 0.00 37.29 2.15
3262 4677 2.485426 CCACTGAACCAGCTGTTGTATG 59.515 50.000 13.81 3.70 37.29 2.39
3263 4678 2.371841 TCCACTGAACCAGCTGTTGTAT 59.628 45.455 13.81 0.00 37.29 2.29
3265 4680 0.546122 TCCACTGAACCAGCTGTTGT 59.454 50.000 13.81 0.70 37.29 3.32
3267 4682 0.839946 AGTCCACTGAACCAGCTGTT 59.160 50.000 13.81 7.11 40.81 3.16
3268 4683 0.107456 CAGTCCACTGAACCAGCTGT 59.893 55.000 13.81 0.00 46.59 4.40
3278 4693 2.620251 TGGAAGTTGTCAGTCCACTG 57.380 50.000 0.00 0.00 45.08 3.66
3279 4694 3.136443 TGATTGGAAGTTGTCAGTCCACT 59.864 43.478 2.34 0.00 41.15 4.00
3280 4695 3.476552 TGATTGGAAGTTGTCAGTCCAC 58.523 45.455 2.34 0.00 41.15 4.02
3281 4696 3.855255 TGATTGGAAGTTGTCAGTCCA 57.145 42.857 0.00 0.00 39.70 4.02
3282 4697 3.058914 CGTTGATTGGAAGTTGTCAGTCC 60.059 47.826 0.00 0.00 0.00 3.85
3289 4704 3.980646 TGTTCCGTTGATTGGAAGTTG 57.019 42.857 0.00 0.00 45.76 3.16
3303 4720 4.270084 GTGATGGTGTACATACATGTTCCG 59.730 45.833 17.45 0.00 40.72 4.30
3315 4732 2.396590 ATGGGTTCGTGATGGTGTAC 57.603 50.000 0.00 0.00 0.00 2.90
3320 4737 4.450976 TGAAGATAATGGGTTCGTGATGG 58.549 43.478 0.00 0.00 0.00 3.51
3323 4740 4.900684 TGTTGAAGATAATGGGTTCGTGA 58.099 39.130 0.00 0.00 0.00 4.35
3324 4741 5.621197 TTGTTGAAGATAATGGGTTCGTG 57.379 39.130 0.00 0.00 0.00 4.35
3325 4742 4.156008 GCTTGTTGAAGATAATGGGTTCGT 59.844 41.667 0.00 0.00 0.00 3.85
3326 4743 4.438744 GGCTTGTTGAAGATAATGGGTTCG 60.439 45.833 0.00 0.00 0.00 3.95
3327 4744 4.142160 GGGCTTGTTGAAGATAATGGGTTC 60.142 45.833 0.00 0.00 0.00 3.62
3328 4745 3.769300 GGGCTTGTTGAAGATAATGGGTT 59.231 43.478 0.00 0.00 0.00 4.11
3329 4746 3.245586 TGGGCTTGTTGAAGATAATGGGT 60.246 43.478 0.00 0.00 0.00 4.51
3330 4747 3.364549 TGGGCTTGTTGAAGATAATGGG 58.635 45.455 0.00 0.00 0.00 4.00
3331 4748 5.127519 TGATTGGGCTTGTTGAAGATAATGG 59.872 40.000 0.00 0.00 0.00 3.16
3347 4764 1.541588 GAGTGGAAGTGTTGATTGGGC 59.458 52.381 0.00 0.00 0.00 5.36
3357 4774 1.670811 ACAAAAGCGTGAGTGGAAGTG 59.329 47.619 0.00 0.00 0.00 3.16
3370 4787 9.543018 GTAAGAAGTGTACATTATGACAAAAGC 57.457 33.333 0.00 0.00 0.00 3.51
3403 4832 2.024176 ATTACGCTAGTTGCCACTGG 57.976 50.000 0.00 0.00 38.78 4.00
3439 4868 8.623030 CAGTCATTTTTGTGGATTGGAATTTTT 58.377 29.630 0.00 0.00 0.00 1.94
3440 4869 7.255208 GCAGTCATTTTTGTGGATTGGAATTTT 60.255 33.333 0.00 0.00 0.00 1.82
3459 4888 1.271543 TGGCTTGTTAGCTGCAGTCAT 60.272 47.619 16.64 4.50 46.90 3.06
3471 4905 1.620822 GGATCACTGGTTGGCTTGTT 58.379 50.000 0.00 0.00 0.00 2.83
3498 4932 1.339631 CCGTCCCCTCTTTTACATGCA 60.340 52.381 0.00 0.00 0.00 3.96
3499 4933 1.379527 CCGTCCCCTCTTTTACATGC 58.620 55.000 0.00 0.00 0.00 4.06
3500 4934 1.339631 TGCCGTCCCCTCTTTTACATG 60.340 52.381 0.00 0.00 0.00 3.21
3501 4935 0.988832 TGCCGTCCCCTCTTTTACAT 59.011 50.000 0.00 0.00 0.00 2.29
3502 4936 0.766131 TTGCCGTCCCCTCTTTTACA 59.234 50.000 0.00 0.00 0.00 2.41
3503 4937 1.900245 TTTGCCGTCCCCTCTTTTAC 58.100 50.000 0.00 0.00 0.00 2.01
3504 4938 2.106857 TCTTTTGCCGTCCCCTCTTTTA 59.893 45.455 0.00 0.00 0.00 1.52
3514 4948 4.159377 TGAACATCATTCTTTTGCCGTC 57.841 40.909 0.00 0.00 0.00 4.79
3569 5006 2.672874 TGCTCTTGTGTTGTGCGATATC 59.327 45.455 0.00 0.00 0.00 1.63
3576 5013 1.331756 GACAGGTGCTCTTGTGTTGTG 59.668 52.381 8.37 0.00 34.06 3.33
3577 5014 1.668419 GACAGGTGCTCTTGTGTTGT 58.332 50.000 8.37 0.00 34.06 3.32
3578 5015 0.583438 CGACAGGTGCTCTTGTGTTG 59.417 55.000 8.37 0.00 34.06 3.33
3579 5016 0.532862 CCGACAGGTGCTCTTGTGTT 60.533 55.000 8.37 0.00 34.06 3.32
3580 5017 1.069765 CCGACAGGTGCTCTTGTGT 59.930 57.895 8.37 0.00 34.06 3.72
3613 5050 4.394712 CCTCCCGCCGCAGTTCTT 62.395 66.667 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.