Multiple sequence alignment - TraesCS6A01G368200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6A01G368200
chr6A
100.000
3402
0
0
1
3402
594607538
594610939
0.000000e+00
6283.0
1
TraesCS6A01G368200
chr6A
93.015
1990
107
18
1146
3117
594652438
594654413
0.000000e+00
2876.0
2
TraesCS6A01G368200
chr6A
90.552
942
41
10
424
1329
594651726
594652655
0.000000e+00
1203.0
3
TraesCS6A01G368200
chr6A
89.163
203
19
1
1169
1368
594608640
594608842
2.030000e-62
250.0
4
TraesCS6A01G368200
chr6A
89.163
203
19
1
1103
1305
594608706
594608905
2.030000e-62
250.0
5
TraesCS6A01G368200
chr6A
88.670
203
20
1
1169
1368
594652428
594652630
9.430000e-61
244.0
6
TraesCS6A01G368200
chr6A
97.297
37
0
1
299
335
594651658
594651693
1.020000e-05
62.1
7
TraesCS6A01G368200
chr6B
86.825
2778
232
64
533
3274
679567777
679565098
0.000000e+00
2979.0
8
TraesCS6A01G368200
chr6B
87.907
1902
174
30
1340
3220
679552139
679550273
0.000000e+00
2187.0
9
TraesCS6A01G368200
chr6B
80.142
1405
177
62
533
1912
679397197
679398524
0.000000e+00
955.0
10
TraesCS6A01G368200
chr6B
86.184
304
28
7
1
293
679395488
679395788
1.970000e-82
316.0
11
TraesCS6A01G368200
chr6B
89.163
203
19
1
1169
1368
679567225
679567023
2.030000e-62
250.0
12
TraesCS6A01G368200
chr6B
86.752
234
14
2
295
526
679534104
679534322
9.430000e-61
244.0
13
TraesCS6A01G368200
chr6B
86.325
234
15
2
295
526
679396936
679397154
4.390000e-59
239.0
14
TraesCS6A01G368200
chr6B
86.058
208
19
3
1
199
679569692
679569486
7.390000e-52
215.0
15
TraesCS6A01G368200
chr6B
93.846
130
6
1
295
422
679568726
679568597
9.630000e-46
195.0
16
TraesCS6A01G368200
chr6B
92.188
128
8
1
295
420
679568084
679567957
2.700000e-41
180.0
17
TraesCS6A01G368200
chr6B
80.377
265
22
6
1
256
679532694
679532937
1.250000e-39
174.0
18
TraesCS6A01G368200
chr6B
95.238
105
5
0
422
526
679567924
679567820
2.100000e-37
167.0
19
TraesCS6A01G368200
chr6B
94.340
106
5
1
422
526
679568565
679568460
9.770000e-36
161.0
20
TraesCS6A01G368200
chr6B
94.059
101
6
0
638
738
679568315
679568215
1.630000e-33
154.0
21
TraesCS6A01G368200
chr6D
84.719
2297
233
50
533
2760
448594598
448596845
0.000000e+00
2189.0
22
TraesCS6A01G368200
chr6D
92.184
998
70
3
1340
2332
448563934
448564928
0.000000e+00
1404.0
23
TraesCS6A01G368200
chr6D
85.822
1065
111
18
1605
2656
448579823
448580860
0.000000e+00
1094.0
24
TraesCS6A01G368200
chr6D
84.318
1033
97
29
299
1287
448577249
448578260
0.000000e+00
950.0
25
TraesCS6A01G368200
chr6D
89.078
293
24
2
1
293
448562175
448562459
1.160000e-94
357.0
26
TraesCS6A01G368200
chr6D
87.171
304
30
3
1
295
448576467
448576770
1.510000e-88
337.0
27
TraesCS6A01G368200
chr6D
86.404
228
27
2
1103
1329
448595216
448595440
2.620000e-61
246.0
28
TraesCS6A01G368200
chr6D
93.333
45
3
0
479
523
448594508
448594552
2.190000e-07
67.6
29
TraesCS6A01G368200
chrUn
83.166
1194
152
24
1594
2767
79404540
79405704
0.000000e+00
1046.0
30
TraesCS6A01G368200
chrUn
82.476
1050
138
22
1736
2767
79378408
79379429
0.000000e+00
878.0
31
TraesCS6A01G368200
chrUn
86.710
617
66
10
1231
1839
472326640
472326032
0.000000e+00
671.0
32
TraesCS6A01G368200
chrUn
86.752
234
14
2
295
526
79375218
79375436
9.430000e-61
244.0
33
TraesCS6A01G368200
chrUn
86.752
234
14
2
295
526
79401840
79402058
9.430000e-61
244.0
34
TraesCS6A01G368200
chrUn
81.908
304
24
7
1
295
79373787
79374068
9.500000e-56
228.0
35
TraesCS6A01G368200
chrUn
81.908
304
24
7
1
295
79400411
79400692
9.500000e-56
228.0
36
TraesCS6A01G368200
chrUn
88.550
131
6
1
3280
3401
323149509
323149379
2.110000e-32
150.0
37
TraesCS6A01G368200
chrUn
88.550
131
6
1
3280
3401
346989201
346989071
2.110000e-32
150.0
38
TraesCS6A01G368200
chr2D
83.446
737
113
7
1609
2342
97282021
97282751
0.000000e+00
676.0
39
TraesCS6A01G368200
chr2A
83.016
736
118
5
1609
2342
96092335
96093065
0.000000e+00
660.0
40
TraesCS6A01G368200
chr7A
90.608
181
17
0
986
1166
602927666
602927486
1.220000e-59
241.0
41
TraesCS6A01G368200
chr7D
94.309
123
7
0
3280
3402
366720822
366720700
4.480000e-44
189.0
42
TraesCS6A01G368200
chr3D
89.362
141
6
1
3271
3402
415718489
415718629
5.840000e-38
169.0
43
TraesCS6A01G368200
chr3D
89.394
132
5
1
3280
3402
569156279
569156148
1.260000e-34
158.0
44
TraesCS6A01G368200
chr3D
88.636
132
6
1
3280
3402
120736168
120736299
5.880000e-33
152.0
45
TraesCS6A01G368200
chr5A
83.146
178
24
6
121
295
421831520
421831346
1.260000e-34
158.0
46
TraesCS6A01G368200
chr5A
94.681
94
5
0
3278
3371
603011226
603011133
2.740000e-31
147.0
47
TraesCS6A01G368200
chr4B
87.879
132
7
1
3280
3402
346130736
346130867
2.740000e-31
147.0
48
TraesCS6A01G368200
chr4B
82.635
167
22
6
130
293
522676233
522676071
1.270000e-29
141.0
49
TraesCS6A01G368200
chr5B
81.356
177
29
4
121
295
375641836
375641662
1.270000e-29
141.0
50
TraesCS6A01G368200
chr1A
84.848
132
10
2
3280
3402
453781521
453781651
1.280000e-24
124.0
51
TraesCS6A01G368200
chr3B
76.282
156
30
4
127
281
419967915
419967766
3.640000e-10
76.8
52
TraesCS6A01G368200
chr3B
91.111
45
4
0
1466
1510
545494567
545494611
1.020000e-05
62.1
53
TraesCS6A01G368200
chr3A
94.872
39
2
0
1472
1510
531897138
531897100
1.020000e-05
62.1
54
TraesCS6A01G368200
chr4A
92.683
41
2
1
2980
3019
662253608
662253648
1.320000e-04
58.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6A01G368200
chr6A
594607538
594610939
3401
False
2261.000000
6283
92.775333
1
3402
3
chr6A.!!$F1
3401
1
TraesCS6A01G368200
chr6A
594651658
594654413
2755
False
1096.275000
2876
92.383500
299
3117
4
chr6A.!!$F2
2818
2
TraesCS6A01G368200
chr6B
679550273
679552139
1866
True
2187.000000
2187
87.907000
1340
3220
1
chr6B.!!$R1
1880
3
TraesCS6A01G368200
chr6B
679565098
679569692
4594
True
537.625000
2979
91.464625
1
3274
8
chr6B.!!$R2
3273
4
TraesCS6A01G368200
chr6B
679395488
679398524
3036
False
503.333333
955
84.217000
1
1912
3
chr6B.!!$F1
1911
5
TraesCS6A01G368200
chr6B
679532694
679534322
1628
False
209.000000
244
83.564500
1
526
2
chr6B.!!$F2
525
6
TraesCS6A01G368200
chr6D
448562175
448564928
2753
False
880.500000
1404
90.631000
1
2332
2
chr6D.!!$F1
2331
7
TraesCS6A01G368200
chr6D
448594508
448596845
2337
False
834.200000
2189
88.152000
479
2760
3
chr6D.!!$F3
2281
8
TraesCS6A01G368200
chr6D
448576467
448580860
4393
False
793.666667
1094
85.770333
1
2656
3
chr6D.!!$F2
2655
9
TraesCS6A01G368200
chrUn
472326032
472326640
608
True
671.000000
671
86.710000
1231
1839
1
chrUn.!!$R3
608
10
TraesCS6A01G368200
chrUn
79400411
79405704
5293
False
506.000000
1046
83.942000
1
2767
3
chrUn.!!$F2
2766
11
TraesCS6A01G368200
chrUn
79373787
79379429
5642
False
450.000000
878
83.712000
1
2767
3
chrUn.!!$F1
2766
12
TraesCS6A01G368200
chr2D
97282021
97282751
730
False
676.000000
676
83.446000
1609
2342
1
chr2D.!!$F1
733
13
TraesCS6A01G368200
chr2A
96092335
96093065
730
False
660.000000
660
83.016000
1609
2342
1
chr2A.!!$F1
733
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
632
2226
0.10509
TACTACCACCACCACCACCA
60.105
55.0
0.0
0.0
0.00
4.17
F
1633
6150
0.17576
GTGATGCCTCCGTGCTTCTA
59.824
55.0
0.0
0.0
36.62
2.10
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1987
6504
0.108186
AGCAATGCGAGATTCCGACA
60.108
50.0
0.0
0.0
0.0
4.35
R
3301
7855
0.028770
CAGCGTTTTCTTCCGTTGCA
59.971
50.0
0.0
0.0
0.0
4.08
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
56
57
9.112725
GTTTGGTCAAACTAGAGGTACTTTTAA
57.887
33.333
16.61
0.00
45.26
1.52
84
85
7.275920
ACAGGAACCTTATATGCAGACTAAAG
58.724
38.462
0.00
0.00
0.00
1.85
151
163
0.537371
CCGTCCCCAAATAGATGGCC
60.537
60.000
0.00
0.00
39.26
5.36
193
234
7.545362
AGTCAATGATTTCTAAATCTGACCG
57.455
36.000
21.91
8.30
43.93
4.79
343
1843
1.482182
TCTCCAATGATCACCCTCACG
59.518
52.381
0.00
0.00
0.00
4.35
347
1847
2.093181
CCAATGATCACCCTCACGGTAA
60.093
50.000
0.00
0.00
46.14
2.85
466
2004
4.527038
AGCTAGCTGTTAACTGTTGGTCTA
59.473
41.667
18.57
5.75
0.00
2.59
558
2132
2.169144
TGAGTGTACATGCTCATCCAGG
59.831
50.000
11.14
0.00
36.89
4.45
562
2136
4.009675
GTGTACATGCTCATCCAGGAAAA
58.990
43.478
0.00
0.00
0.00
2.29
563
2137
4.009675
TGTACATGCTCATCCAGGAAAAC
58.990
43.478
0.00
0.00
0.00
2.43
574
2149
0.307760
CAGGAAAACGTGTGCAGTCC
59.692
55.000
0.00
0.00
0.00
3.85
596
2171
0.322456
CGGCAGTTTCCCATTCTCCA
60.322
55.000
0.00
0.00
0.00
3.86
616
2210
8.043429
TCTCCAGGCTAAATACTACTACTACT
57.957
38.462
0.00
0.00
0.00
2.57
617
2211
9.163894
TCTCCAGGCTAAATACTACTACTACTA
57.836
37.037
0.00
0.00
0.00
1.82
618
2212
9.218440
CTCCAGGCTAAATACTACTACTACTAC
57.782
40.741
0.00
0.00
0.00
2.73
619
2213
8.160106
TCCAGGCTAAATACTACTACTACTACC
58.840
40.741
0.00
0.00
0.00
3.18
620
2214
7.941238
CCAGGCTAAATACTACTACTACTACCA
59.059
40.741
0.00
0.00
0.00
3.25
621
2215
8.782144
CAGGCTAAATACTACTACTACTACCAC
58.218
40.741
0.00
0.00
0.00
4.16
622
2216
7.941790
AGGCTAAATACTACTACTACTACCACC
59.058
40.741
0.00
0.00
0.00
4.61
623
2217
7.721399
GGCTAAATACTACTACTACTACCACCA
59.279
40.741
0.00
0.00
0.00
4.17
624
2218
8.563732
GCTAAATACTACTACTACTACCACCAC
58.436
40.741
0.00
0.00
0.00
4.16
625
2219
7.888250
AAATACTACTACTACTACCACCACC
57.112
40.000
0.00
0.00
0.00
4.61
626
2220
4.934797
ACTACTACTACTACCACCACCA
57.065
45.455
0.00
0.00
0.00
4.17
627
2221
4.593956
ACTACTACTACTACCACCACCAC
58.406
47.826
0.00
0.00
0.00
4.16
628
2222
2.812658
ACTACTACTACCACCACCACC
58.187
52.381
0.00
0.00
0.00
4.61
629
2223
2.110543
ACTACTACTACCACCACCACCA
59.889
50.000
0.00
0.00
0.00
4.17
630
2224
1.345063
ACTACTACCACCACCACCAC
58.655
55.000
0.00
0.00
0.00
4.16
631
2225
0.611714
CTACTACCACCACCACCACC
59.388
60.000
0.00
0.00
0.00
4.61
632
2226
0.105090
TACTACCACCACCACCACCA
60.105
55.000
0.00
0.00
0.00
4.17
633
2227
1.072505
CTACCACCACCACCACCAC
59.927
63.158
0.00
0.00
0.00
4.16
634
2228
2.406002
CTACCACCACCACCACCACC
62.406
65.000
0.00
0.00
0.00
4.61
635
2229
3.814906
CCACCACCACCACCACCA
61.815
66.667
0.00
0.00
0.00
4.17
636
2230
2.520458
CACCACCACCACCACCAT
59.480
61.111
0.00
0.00
0.00
3.55
637
2231
1.603455
CACCACCACCACCACCATC
60.603
63.158
0.00
0.00
0.00
3.51
638
2232
2.081787
ACCACCACCACCACCATCA
61.082
57.895
0.00
0.00
0.00
3.07
639
2233
1.603455
CCACCACCACCACCATCAC
60.603
63.158
0.00
0.00
0.00
3.06
640
2234
1.603455
CACCACCACCACCATCACC
60.603
63.158
0.00
0.00
0.00
4.02
641
2235
2.081787
ACCACCACCACCATCACCA
61.082
57.895
0.00
0.00
0.00
4.17
642
2236
1.603455
CCACCACCACCATCACCAC
60.603
63.158
0.00
0.00
0.00
4.16
643
2237
1.603455
CACCACCACCATCACCACC
60.603
63.158
0.00
0.00
0.00
4.61
644
2238
2.081787
ACCACCACCATCACCACCA
61.082
57.895
0.00
0.00
0.00
4.17
645
2239
1.603455
CCACCACCATCACCACCAC
60.603
63.158
0.00
0.00
0.00
4.16
651
2251
1.303561
CCATCACCACCACCACCAG
60.304
63.158
0.00
0.00
0.00
4.00
886
2543
1.001974
CCCACGTTTGTCATCCAGAGA
59.998
52.381
0.00
0.00
0.00
3.10
897
2554
2.091444
TCATCCAGAGATCAGGCTCTCA
60.091
50.000
5.21
0.00
43.15
3.27
921
2578
4.314121
CCTTGGAGCTAGCTTGCTATAAG
58.686
47.826
22.70
24.32
44.17
1.73
970
2641
3.884895
TCAGTCCATCACAACAAACACT
58.115
40.909
0.00
0.00
0.00
3.55
1173
2970
0.976073
CTCCACCATACACCCCGAGT
60.976
60.000
0.00
0.00
0.00
4.18
1337
4474
4.796495
CGCCCCAGCTACCCCAAC
62.796
72.222
0.00
0.00
36.60
3.77
1338
4475
3.339093
GCCCCAGCTACCCCAACT
61.339
66.667
0.00
0.00
35.50
3.16
1339
4476
2.998949
CCCCAGCTACCCCAACTC
59.001
66.667
0.00
0.00
0.00
3.01
1340
4477
2.680370
CCCCAGCTACCCCAACTCC
61.680
68.421
0.00
0.00
0.00
3.85
1341
4478
1.616628
CCCAGCTACCCCAACTCCT
60.617
63.158
0.00
0.00
0.00
3.69
1342
4479
1.627297
CCCAGCTACCCCAACTCCTC
61.627
65.000
0.00
0.00
0.00
3.71
1343
4480
1.627297
CCAGCTACCCCAACTCCTCC
61.627
65.000
0.00
0.00
0.00
4.30
1344
4481
1.686110
AGCTACCCCAACTCCTCCG
60.686
63.158
0.00
0.00
0.00
4.63
1345
4482
2.901042
CTACCCCAACTCCTCCGC
59.099
66.667
0.00
0.00
0.00
5.54
1346
4483
2.686106
TACCCCAACTCCTCCGCC
60.686
66.667
0.00
0.00
0.00
6.13
1370
4507
4.033776
CACCCCGAGCACACCCAT
62.034
66.667
0.00
0.00
0.00
4.00
1388
4525
1.592400
ATCAAAGGACTCGCGGTCGA
61.592
55.000
17.56
11.48
45.35
4.20
1431
4568
1.014044
GCGCGGAAGACATTGTGAGA
61.014
55.000
8.83
0.00
0.00
3.27
1581
6093
8.877779
GTCATGAAATATATGTAGGCTGATGTC
58.122
37.037
0.00
0.00
0.00
3.06
1633
6150
0.175760
GTGATGCCTCCGTGCTTCTA
59.824
55.000
0.00
0.00
36.62
2.10
1972
6489
0.750546
CCGACGAGATGGTCACCCTA
60.751
60.000
0.00
0.00
36.73
3.53
1987
6504
0.615331
CCCTATCTGGTGCACACACT
59.385
55.000
20.43
2.76
46.57
3.55
1999
6516
1.340658
CACACACTGTCGGAATCTCG
58.659
55.000
0.00
0.00
0.00
4.04
2440
6958
5.088739
CACATCATCGCTAGTTTTTCAACC
58.911
41.667
0.00
0.00
32.70
3.77
2754
7295
5.220796
GGGCTTCTTCGCTTATTAAATTCGT
60.221
40.000
0.00
0.00
0.00
3.85
2868
7418
5.933463
ACAACATGCAACCATCCATTTAAAG
59.067
36.000
0.00
0.00
0.00
1.85
2872
7422
4.819769
TGCAACCATCCATTTAAAGAAGC
58.180
39.130
0.00
0.00
0.00
3.86
2873
7423
4.183865
GCAACCATCCATTTAAAGAAGCC
58.816
43.478
0.00
0.00
0.00
4.35
2923
7474
7.178712
AGCATTTCGTACTATTGTGCTAATC
57.821
36.000
7.54
0.00
39.43
1.75
3090
7643
1.878775
GCATGGGGCATTATCTCGC
59.121
57.895
0.00
0.00
43.97
5.03
3133
7686
9.653516
TCTCCACTAATCTATTTCTCTCAAGAT
57.346
33.333
0.00
0.00
0.00
2.40
3147
7700
6.291377
TCTCTCAAGATACAAATATGCCACC
58.709
40.000
0.00
0.00
0.00
4.61
3149
7702
7.290014
TCTCTCAAGATACAAATATGCCACCTA
59.710
37.037
0.00
0.00
0.00
3.08
3214
7767
6.956497
AGGCTCATCTATTTTCCATCCTATC
58.044
40.000
0.00
0.00
0.00
2.08
3220
7773
8.388589
TCATCTATTTTCCATCCTATCATGCTT
58.611
33.333
0.00
0.00
0.00
3.91
3302
7856
2.015627
CACAAATGCCCGTGCGTTG
61.016
57.895
0.00
1.29
45.88
4.10
3303
7857
3.105157
CAAATGCCCGTGCGTTGC
61.105
61.111
0.00
0.00
45.88
4.17
3304
7858
3.600694
AAATGCCCGTGCGTTGCA
61.601
55.556
0.00
8.11
45.88
4.08
3305
7859
3.144120
AAATGCCCGTGCGTTGCAA
62.144
52.632
0.00
0.00
45.88
4.08
3306
7860
3.839642
AATGCCCGTGCGTTGCAAC
62.840
57.895
19.89
19.89
44.90
4.17
3318
7872
0.843872
GTTGCAACGGAAGAAAACGC
59.156
50.000
14.90
0.00
0.00
4.84
3319
7873
0.736053
TTGCAACGGAAGAAAACGCT
59.264
45.000
0.00
0.00
0.00
5.07
3320
7874
0.028770
TGCAACGGAAGAAAACGCTG
59.971
50.000
0.00
0.00
0.00
5.18
3321
7875
0.660300
GCAACGGAAGAAAACGCTGG
60.660
55.000
0.00
0.00
0.00
4.85
3322
7876
0.661020
CAACGGAAGAAAACGCTGGT
59.339
50.000
0.00
0.00
0.00
4.00
3323
7877
1.064952
CAACGGAAGAAAACGCTGGTT
59.935
47.619
0.00
0.00
38.22
3.67
3324
7878
0.942252
ACGGAAGAAAACGCTGGTTC
59.058
50.000
0.00
0.00
34.62
3.62
3325
7879
0.237498
CGGAAGAAAACGCTGGTTCC
59.763
55.000
0.00
0.00
34.62
3.62
3326
7880
1.605753
GGAAGAAAACGCTGGTTCCT
58.394
50.000
0.00
0.00
34.62
3.36
3327
7881
2.774687
GGAAGAAAACGCTGGTTCCTA
58.225
47.619
0.00
0.00
34.62
2.94
3328
7882
3.344515
GGAAGAAAACGCTGGTTCCTAT
58.655
45.455
0.00
0.00
34.62
2.57
3329
7883
3.127030
GGAAGAAAACGCTGGTTCCTATG
59.873
47.826
0.00
0.00
34.62
2.23
3330
7884
3.695830
AGAAAACGCTGGTTCCTATGA
57.304
42.857
0.00
0.00
34.62
2.15
3331
7885
4.015872
AGAAAACGCTGGTTCCTATGAA
57.984
40.909
0.00
0.00
34.62
2.57
3332
7886
4.589908
AGAAAACGCTGGTTCCTATGAAT
58.410
39.130
0.00
0.00
34.62
2.57
3333
7887
4.636206
AGAAAACGCTGGTTCCTATGAATC
59.364
41.667
0.00
0.00
34.62
2.52
3334
7888
3.914426
AACGCTGGTTCCTATGAATCT
57.086
42.857
0.00
0.00
32.53
2.40
3335
7889
3.185246
ACGCTGGTTCCTATGAATCTG
57.815
47.619
0.00
0.00
34.61
2.90
3336
7890
1.869767
CGCTGGTTCCTATGAATCTGC
59.130
52.381
11.27
11.27
46.96
4.26
3337
7891
2.225467
GCTGGTTCCTATGAATCTGCC
58.775
52.381
10.49
0.00
45.61
4.85
3338
7892
2.421952
GCTGGTTCCTATGAATCTGCCA
60.422
50.000
10.49
1.03
45.61
4.92
3339
7893
3.474600
CTGGTTCCTATGAATCTGCCAG
58.525
50.000
0.00
0.00
35.76
4.85
3340
7894
3.114606
TGGTTCCTATGAATCTGCCAGA
58.885
45.455
0.00
0.00
32.53
3.86
3341
7895
3.118261
TGGTTCCTATGAATCTGCCAGAC
60.118
47.826
0.00
0.00
32.53
3.51
3342
7896
3.471680
GTTCCTATGAATCTGCCAGACC
58.528
50.000
0.00
0.00
31.98
3.85
3343
7897
2.763039
TCCTATGAATCTGCCAGACCA
58.237
47.619
0.00
0.00
0.00
4.02
3344
7898
3.114606
TCCTATGAATCTGCCAGACCAA
58.885
45.455
0.00
0.00
0.00
3.67
3345
7899
3.135348
TCCTATGAATCTGCCAGACCAAG
59.865
47.826
0.00
0.08
0.00
3.61
3346
7900
2.431954
ATGAATCTGCCAGACCAAGG
57.568
50.000
0.00
0.00
0.00
3.61
3347
7901
1.361204
TGAATCTGCCAGACCAAGGA
58.639
50.000
0.00
0.00
0.00
3.36
3348
7902
1.704628
TGAATCTGCCAGACCAAGGAA
59.295
47.619
0.00
0.00
0.00
3.36
3349
7903
2.087646
GAATCTGCCAGACCAAGGAAC
58.912
52.381
0.00
0.00
0.00
3.62
3350
7904
0.329596
ATCTGCCAGACCAAGGAACC
59.670
55.000
0.00
0.00
0.00
3.62
3351
7905
1.059584
TCTGCCAGACCAAGGAACCA
61.060
55.000
0.00
0.00
0.00
3.67
3352
7906
0.038744
CTGCCAGACCAAGGAACCAT
59.961
55.000
0.00
0.00
0.00
3.55
3353
7907
0.251297
TGCCAGACCAAGGAACCATG
60.251
55.000
0.00
0.00
0.00
3.66
3354
7908
0.251341
GCCAGACCAAGGAACCATGT
60.251
55.000
0.00
0.00
0.00
3.21
3355
7909
1.826385
CCAGACCAAGGAACCATGTC
58.174
55.000
0.00
0.00
0.00
3.06
3356
7910
1.442769
CAGACCAAGGAACCATGTCG
58.557
55.000
0.00
0.00
0.00
4.35
3357
7911
1.056660
AGACCAAGGAACCATGTCGT
58.943
50.000
0.00
0.00
0.00
4.34
3358
7912
1.420138
AGACCAAGGAACCATGTCGTT
59.580
47.619
0.00
0.00
0.00
3.85
3359
7913
1.535462
GACCAAGGAACCATGTCGTTG
59.465
52.381
10.30
10.30
41.10
4.10
3361
7915
1.890876
CAAGGAACCATGTCGTTGGA
58.109
50.000
9.67
0.00
38.91
3.53
3362
7916
1.535462
CAAGGAACCATGTCGTTGGAC
59.465
52.381
9.67
0.00
43.71
4.02
3373
7927
4.647654
GTTGGACAACGCTCGAGA
57.352
55.556
18.75
0.00
0.00
4.04
3374
7928
2.895039
GTTGGACAACGCTCGAGAA
58.105
52.632
18.75
0.00
0.00
2.87
3375
7929
1.214367
GTTGGACAACGCTCGAGAAA
58.786
50.000
18.75
0.00
0.00
2.52
3376
7930
1.798813
GTTGGACAACGCTCGAGAAAT
59.201
47.619
18.75
0.00
0.00
2.17
3377
7931
2.163818
TGGACAACGCTCGAGAAATT
57.836
45.000
18.75
3.33
0.00
1.82
3378
7932
1.798223
TGGACAACGCTCGAGAAATTG
59.202
47.619
18.75
17.82
0.00
2.32
3379
7933
1.128692
GGACAACGCTCGAGAAATTGG
59.871
52.381
18.75
2.10
0.00
3.16
3380
7934
1.798813
GACAACGCTCGAGAAATTGGT
59.201
47.619
18.75
5.60
0.00
3.67
3381
7935
2.218603
ACAACGCTCGAGAAATTGGTT
58.781
42.857
18.75
6.60
0.00
3.67
3382
7936
2.223377
ACAACGCTCGAGAAATTGGTTC
59.777
45.455
18.75
0.00
36.38
3.62
3383
7937
2.163818
ACGCTCGAGAAATTGGTTCA
57.836
45.000
18.75
0.00
38.86
3.18
3384
7938
2.699954
ACGCTCGAGAAATTGGTTCAT
58.300
42.857
18.75
0.00
38.86
2.57
3385
7939
3.074412
ACGCTCGAGAAATTGGTTCATT
58.926
40.909
18.75
0.00
38.86
2.57
3386
7940
3.502211
ACGCTCGAGAAATTGGTTCATTT
59.498
39.130
18.75
0.00
38.86
2.32
3387
7941
4.091424
CGCTCGAGAAATTGGTTCATTTC
58.909
43.478
18.75
0.00
38.86
2.17
3388
7942
4.378356
CGCTCGAGAAATTGGTTCATTTCA
60.378
41.667
18.75
0.00
38.86
2.69
3389
7943
5.644644
GCTCGAGAAATTGGTTCATTTCAT
58.355
37.500
18.75
0.00
38.86
2.57
3390
7944
6.095377
GCTCGAGAAATTGGTTCATTTCATT
58.905
36.000
18.75
0.00
38.86
2.57
3391
7945
7.250569
GCTCGAGAAATTGGTTCATTTCATTA
58.749
34.615
18.75
0.00
38.86
1.90
3392
7946
7.430502
GCTCGAGAAATTGGTTCATTTCATTAG
59.569
37.037
18.75
4.14
38.86
1.73
3393
7947
7.250569
TCGAGAAATTGGTTCATTTCATTAGC
58.749
34.615
8.47
0.00
38.86
3.09
3394
7948
7.028962
CGAGAAATTGGTTCATTTCATTAGCA
58.971
34.615
8.47
0.00
38.86
3.49
3395
7949
7.703621
CGAGAAATTGGTTCATTTCATTAGCAT
59.296
33.333
8.47
0.00
38.86
3.79
3399
7953
9.550406
AAATTGGTTCATTTCATTAGCATATGG
57.450
29.630
4.56
0.00
0.00
2.74
3400
7954
6.653526
TGGTTCATTTCATTAGCATATGGG
57.346
37.500
4.56
0.00
0.00
4.00
3401
7955
5.539574
TGGTTCATTTCATTAGCATATGGGG
59.460
40.000
4.56
0.00
0.00
4.96
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
56
57
7.380423
AGTCTGCATATAAGGTTCCTGTTAT
57.620
36.000
0.00
0.00
0.00
1.89
58
59
5.700402
AGTCTGCATATAAGGTTCCTGTT
57.300
39.130
0.00
0.00
0.00
3.16
60
61
6.708054
CCTTTAGTCTGCATATAAGGTTCCTG
59.292
42.308
0.00
0.00
0.00
3.86
63
64
7.272978
TCACCTTTAGTCTGCATATAAGGTTC
58.727
38.462
13.12
0.00
41.82
3.62
66
67
6.821388
ACTCACCTTTAGTCTGCATATAAGG
58.179
40.000
10.08
10.08
38.44
2.69
84
85
2.426024
TCAGCTTGGTACGATACTCACC
59.574
50.000
0.00
0.00
0.00
4.02
177
189
4.762289
AGGCTCGGTCAGATTTAGAAAT
57.238
40.909
0.00
0.00
0.00
2.17
187
228
8.873830
CATTTATTTACATATAGGCTCGGTCAG
58.126
37.037
0.00
0.00
0.00
3.51
286
327
0.392461
ATTGCGCGGGTCAACTACAT
60.392
50.000
8.83
0.00
0.00
2.29
343
1843
1.389106
GATGTCAGTGCGTCGTTTACC
59.611
52.381
0.00
0.00
0.00
2.85
347
1847
1.070821
CATGATGTCAGTGCGTCGTT
58.929
50.000
0.00
0.00
0.00
3.85
432
1970
1.270305
ACAGCTAGCTCGTTCAAGCAA
60.270
47.619
16.15
0.00
45.00
3.91
466
2004
9.601217
CTACTAATCAAGTTGCCAACTAGTAAT
57.399
33.333
11.10
0.00
41.91
1.89
558
2132
1.398451
CGATGGACTGCACACGTTTTC
60.398
52.381
0.00
0.00
0.00
2.29
562
2136
2.048222
CCGATGGACTGCACACGT
60.048
61.111
0.00
0.00
0.00
4.49
563
2137
3.490759
GCCGATGGACTGCACACG
61.491
66.667
0.00
0.00
0.00
4.49
574
2149
1.672881
GAGAATGGGAAACTGCCGATG
59.327
52.381
0.00
0.00
0.00
3.84
596
2171
7.941790
GGTGGTAGTAGTAGTAGTATTTAGCCT
59.058
40.741
0.00
0.00
0.00
4.58
616
2210
2.453812
GGTGGTGGTGGTGGTGGTA
61.454
63.158
0.00
0.00
0.00
3.25
617
2211
3.816090
GGTGGTGGTGGTGGTGGT
61.816
66.667
0.00
0.00
0.00
4.16
618
2212
3.145473
ATGGTGGTGGTGGTGGTGG
62.145
63.158
0.00
0.00
0.00
4.61
619
2213
1.603455
GATGGTGGTGGTGGTGGTG
60.603
63.158
0.00
0.00
0.00
4.17
620
2214
2.081787
TGATGGTGGTGGTGGTGGT
61.082
57.895
0.00
0.00
0.00
4.16
621
2215
1.603455
GTGATGGTGGTGGTGGTGG
60.603
63.158
0.00
0.00
0.00
4.61
622
2216
1.603455
GGTGATGGTGGTGGTGGTG
60.603
63.158
0.00
0.00
0.00
4.17
623
2217
2.081787
TGGTGATGGTGGTGGTGGT
61.082
57.895
0.00
0.00
0.00
4.16
624
2218
1.603455
GTGGTGATGGTGGTGGTGG
60.603
63.158
0.00
0.00
0.00
4.61
625
2219
1.603455
GGTGGTGATGGTGGTGGTG
60.603
63.158
0.00
0.00
0.00
4.17
626
2220
2.081787
TGGTGGTGATGGTGGTGGT
61.082
57.895
0.00
0.00
0.00
4.16
627
2221
1.603455
GTGGTGGTGATGGTGGTGG
60.603
63.158
0.00
0.00
0.00
4.61
628
2222
1.603455
GGTGGTGGTGATGGTGGTG
60.603
63.158
0.00
0.00
0.00
4.17
629
2223
2.081787
TGGTGGTGGTGATGGTGGT
61.082
57.895
0.00
0.00
0.00
4.16
630
2224
1.603455
GTGGTGGTGGTGATGGTGG
60.603
63.158
0.00
0.00
0.00
4.61
631
2225
1.603455
GGTGGTGGTGGTGATGGTG
60.603
63.158
0.00
0.00
0.00
4.17
632
2226
2.067932
CTGGTGGTGGTGGTGATGGT
62.068
60.000
0.00
0.00
0.00
3.55
633
2227
1.303561
CTGGTGGTGGTGGTGATGG
60.304
63.158
0.00
0.00
0.00
3.51
634
2228
0.690192
TACTGGTGGTGGTGGTGATG
59.310
55.000
0.00
0.00
0.00
3.07
635
2229
1.440618
TTACTGGTGGTGGTGGTGAT
58.559
50.000
0.00
0.00
0.00
3.06
636
2230
1.440618
ATTACTGGTGGTGGTGGTGA
58.559
50.000
0.00
0.00
0.00
4.02
637
2231
2.304761
AGTATTACTGGTGGTGGTGGTG
59.695
50.000
0.00
0.00
0.00
4.17
638
2232
2.627933
AGTATTACTGGTGGTGGTGGT
58.372
47.619
0.00
0.00
0.00
4.16
639
2233
4.829872
TTAGTATTACTGGTGGTGGTGG
57.170
45.455
6.60
0.00
0.00
4.61
640
2234
6.235231
AGATTAGTATTACTGGTGGTGGTG
57.765
41.667
6.60
0.00
0.00
4.17
641
2235
7.983166
TTAGATTAGTATTACTGGTGGTGGT
57.017
36.000
6.60
0.00
0.00
4.16
642
2236
9.490379
GAATTAGATTAGTATTACTGGTGGTGG
57.510
37.037
6.60
0.00
0.00
4.61
643
2237
9.193133
CGAATTAGATTAGTATTACTGGTGGTG
57.807
37.037
6.60
0.00
0.00
4.17
644
2238
7.871463
GCGAATTAGATTAGTATTACTGGTGGT
59.129
37.037
6.60
0.00
0.00
4.16
645
2239
8.088981
AGCGAATTAGATTAGTATTACTGGTGG
58.911
37.037
6.60
0.00
0.00
4.61
897
2554
1.204113
AGCAAGCTAGCTCCAAGGGT
61.204
55.000
19.65
8.31
42.18
4.34
921
2578
4.099170
CGCTGCTCTGCCTGCAAC
62.099
66.667
0.00
0.00
40.13
4.17
996
2667
2.124736
GCGAGCTTGGCCATGGTA
60.125
61.111
21.96
0.00
0.00
3.25
1173
2970
0.682209
GCGGTGGAGGACTAGGTGTA
60.682
60.000
0.00
0.00
0.00
2.90
1321
4458
3.339093
AGTTGGGGTAGCTGGGGC
61.339
66.667
0.00
0.00
39.06
5.80
1322
4459
2.680370
GGAGTTGGGGTAGCTGGGG
61.680
68.421
0.00
0.00
0.00
4.96
1323
4460
1.616628
AGGAGTTGGGGTAGCTGGG
60.617
63.158
0.00
0.00
0.00
4.45
1324
4461
1.627297
GGAGGAGTTGGGGTAGCTGG
61.627
65.000
0.00
0.00
0.00
4.85
1325
4462
1.908483
GGAGGAGTTGGGGTAGCTG
59.092
63.158
0.00
0.00
0.00
4.24
1326
4463
1.686110
CGGAGGAGTTGGGGTAGCT
60.686
63.158
0.00
0.00
0.00
3.32
1327
4464
2.901042
CGGAGGAGTTGGGGTAGC
59.099
66.667
0.00
0.00
0.00
3.58
1328
4465
2.732619
GGCGGAGGAGTTGGGGTAG
61.733
68.421
0.00
0.00
0.00
3.18
1329
4466
2.686106
GGCGGAGGAGTTGGGGTA
60.686
66.667
0.00
0.00
0.00
3.69
1351
4488
3.315949
GGGTGTGCTCGGGGTGTA
61.316
66.667
0.00
0.00
0.00
2.90
1363
4500
0.321653
GCGAGTCCTTTGATGGGTGT
60.322
55.000
0.00
0.00
0.00
4.16
1370
4507
2.257371
CGACCGCGAGTCCTTTGA
59.743
61.111
8.23
0.00
43.08
2.69
1388
4525
4.097418
AGGGCATGACTTCTTGTAGTAGT
58.903
43.478
0.00
0.00
0.00
2.73
1431
4568
0.534877
TGGCATCACGCACAACTTCT
60.535
50.000
0.00
0.00
45.17
2.85
1581
6093
3.719173
AAACCATTAAACACCACACGG
57.281
42.857
0.00
0.00
38.77
4.94
1633
6150
1.352352
CTGTTGGGGTCCACTTGATCT
59.648
52.381
0.00
0.00
30.78
2.75
1972
6489
0.601046
CGACAGTGTGTGCACCAGAT
60.601
55.000
15.69
1.11
46.35
2.90
1987
6504
0.108186
AGCAATGCGAGATTCCGACA
60.108
50.000
0.00
0.00
0.00
4.35
1999
6516
1.129437
GAGTTGAAGGACGAGCAATGC
59.871
52.381
0.00
0.00
0.00
3.56
2440
6958
5.174761
GCACGAGCTTATTCTCAATCTACTG
59.825
44.000
0.00
0.00
37.91
2.74
2645
7185
7.760340
CACCTAGGAACACAGTAAGAGAATTAC
59.240
40.741
17.98
0.00
0.00
1.89
2656
7196
6.183361
ACAATAGAAACACCTAGGAACACAGT
60.183
38.462
17.98
0.92
0.00
3.55
3153
7706
5.710513
TTGCATGTTTATATGGCATCTCC
57.289
39.130
1.65
0.00
0.00
3.71
3154
7707
9.297586
CATATTTGCATGTTTATATGGCATCTC
57.702
33.333
1.65
0.00
30.79
2.75
3184
7737
7.147846
GGATGGAAAATAGATGAGCCTTTTCAA
60.148
37.037
7.91
0.00
38.65
2.69
3185
7738
6.322201
GGATGGAAAATAGATGAGCCTTTTCA
59.678
38.462
7.91
0.00
38.65
2.69
3192
7745
7.201714
GCATGATAGGATGGAAAATAGATGAGC
60.202
40.741
0.00
0.00
0.00
4.26
3197
7750
7.982252
AGAAGCATGATAGGATGGAAAATAGA
58.018
34.615
0.00
0.00
0.00
1.98
3270
7824
5.997746
GGGCATTTGTGCTAGTATGAGATAA
59.002
40.000
0.07
0.00
34.73
1.75
3274
7828
2.545526
CGGGCATTTGTGCTAGTATGAG
59.454
50.000
0.07
0.00
34.73
2.90
3275
7829
2.093181
ACGGGCATTTGTGCTAGTATGA
60.093
45.455
0.07
0.00
34.73
2.15
3276
7830
2.032054
CACGGGCATTTGTGCTAGTATG
59.968
50.000
0.07
0.00
34.73
2.39
3277
7831
2.288666
CACGGGCATTTGTGCTAGTAT
58.711
47.619
0.07
0.00
34.73
2.12
3278
7832
1.732941
CACGGGCATTTGTGCTAGTA
58.267
50.000
0.07
0.00
34.73
1.82
3279
7833
2.555123
CACGGGCATTTGTGCTAGT
58.445
52.632
0.07
0.00
34.73
2.57
3284
7838
2.015627
CAACGCACGGGCATTTGTG
61.016
57.895
11.77
0.00
41.24
3.33
3285
7839
2.334653
CAACGCACGGGCATTTGT
59.665
55.556
11.77
0.00
41.24
2.83
3286
7840
3.105157
GCAACGCACGGGCATTTG
61.105
61.111
11.77
13.80
41.24
2.32
3287
7841
3.144120
TTGCAACGCACGGGCATTT
62.144
52.632
11.77
0.00
38.71
2.32
3288
7842
3.600694
TTGCAACGCACGGGCATT
61.601
55.556
11.77
0.00
38.71
3.56
3289
7843
4.341502
GTTGCAACGCACGGGCAT
62.342
61.111
14.90
0.00
38.71
4.40
3299
7853
0.843872
GCGTTTTCTTCCGTTGCAAC
59.156
50.000
19.89
19.89
0.00
4.17
3300
7854
0.736053
AGCGTTTTCTTCCGTTGCAA
59.264
45.000
0.00
0.00
0.00
4.08
3301
7855
0.028770
CAGCGTTTTCTTCCGTTGCA
59.971
50.000
0.00
0.00
0.00
4.08
3302
7856
0.660300
CCAGCGTTTTCTTCCGTTGC
60.660
55.000
0.00
0.00
34.52
4.17
3303
7857
0.661020
ACCAGCGTTTTCTTCCGTTG
59.339
50.000
0.00
0.00
35.44
4.10
3304
7858
1.332686
GAACCAGCGTTTTCTTCCGTT
59.667
47.619
0.00
0.00
30.30
4.44
3305
7859
0.942252
GAACCAGCGTTTTCTTCCGT
59.058
50.000
0.00
0.00
30.30
4.69
3306
7860
0.237498
GGAACCAGCGTTTTCTTCCG
59.763
55.000
0.00
0.00
30.30
4.30
3307
7861
1.605753
AGGAACCAGCGTTTTCTTCC
58.394
50.000
0.00
0.00
30.30
3.46
3308
7862
4.000988
TCATAGGAACCAGCGTTTTCTTC
58.999
43.478
0.00
0.00
30.30
2.87
3309
7863
4.015872
TCATAGGAACCAGCGTTTTCTT
57.984
40.909
0.00
0.00
30.30
2.52
3310
7864
3.695830
TCATAGGAACCAGCGTTTTCT
57.304
42.857
0.00
0.00
30.30
2.52
3311
7865
4.636206
AGATTCATAGGAACCAGCGTTTTC
59.364
41.667
0.00
0.00
35.46
2.29
3312
7866
4.396166
CAGATTCATAGGAACCAGCGTTTT
59.604
41.667
0.00
0.00
35.46
2.43
3313
7867
3.941483
CAGATTCATAGGAACCAGCGTTT
59.059
43.478
0.00
0.00
35.46
3.60
3314
7868
3.535561
CAGATTCATAGGAACCAGCGTT
58.464
45.455
0.00
0.00
35.46
4.84
3315
7869
2.743183
GCAGATTCATAGGAACCAGCGT
60.743
50.000
0.00
0.00
35.46
5.07
3316
7870
1.869767
GCAGATTCATAGGAACCAGCG
59.130
52.381
0.00
0.00
35.46
5.18
3317
7871
2.225467
GGCAGATTCATAGGAACCAGC
58.775
52.381
0.00
0.00
35.46
4.85
3318
7872
3.135348
TCTGGCAGATTCATAGGAACCAG
59.865
47.826
14.43
14.95
41.49
4.00
3319
7873
3.114606
TCTGGCAGATTCATAGGAACCA
58.885
45.455
14.43
0.00
35.46
3.67
3320
7874
3.471680
GTCTGGCAGATTCATAGGAACC
58.528
50.000
21.84
0.00
35.46
3.62
3321
7875
3.118261
TGGTCTGGCAGATTCATAGGAAC
60.118
47.826
21.84
3.73
35.46
3.62
3322
7876
3.114606
TGGTCTGGCAGATTCATAGGAA
58.885
45.455
21.84
0.00
37.45
3.36
3323
7877
2.763039
TGGTCTGGCAGATTCATAGGA
58.237
47.619
21.84
0.00
0.00
2.94
3324
7878
3.474600
CTTGGTCTGGCAGATTCATAGG
58.525
50.000
21.84
11.07
0.00
2.57
3325
7879
3.135348
TCCTTGGTCTGGCAGATTCATAG
59.865
47.826
21.84
18.06
0.00
2.23
3326
7880
3.114606
TCCTTGGTCTGGCAGATTCATA
58.885
45.455
21.84
11.40
0.00
2.15
3327
7881
1.918262
TCCTTGGTCTGGCAGATTCAT
59.082
47.619
21.84
0.00
0.00
2.57
3328
7882
1.361204
TCCTTGGTCTGGCAGATTCA
58.639
50.000
21.84
18.44
0.00
2.57
3329
7883
2.087646
GTTCCTTGGTCTGGCAGATTC
58.912
52.381
21.84
16.07
0.00
2.52
3330
7884
1.272147
GGTTCCTTGGTCTGGCAGATT
60.272
52.381
21.84
0.00
0.00
2.40
3331
7885
0.329596
GGTTCCTTGGTCTGGCAGAT
59.670
55.000
21.84
0.00
0.00
2.90
3332
7886
1.059584
TGGTTCCTTGGTCTGGCAGA
61.060
55.000
14.43
14.43
0.00
4.26
3333
7887
0.038744
ATGGTTCCTTGGTCTGGCAG
59.961
55.000
8.58
8.58
0.00
4.85
3334
7888
0.251297
CATGGTTCCTTGGTCTGGCA
60.251
55.000
0.00
0.00
0.00
4.92
3335
7889
0.251341
ACATGGTTCCTTGGTCTGGC
60.251
55.000
0.00
0.00
0.00
4.85
3336
7890
1.826385
GACATGGTTCCTTGGTCTGG
58.174
55.000
0.00
0.00
0.00
3.86
3337
7891
1.270839
ACGACATGGTTCCTTGGTCTG
60.271
52.381
0.00
4.93
0.00
3.51
3338
7892
1.056660
ACGACATGGTTCCTTGGTCT
58.943
50.000
0.00
0.00
0.00
3.85
3339
7893
1.535462
CAACGACATGGTTCCTTGGTC
59.465
52.381
0.00
4.55
0.00
4.02
3340
7894
1.604604
CAACGACATGGTTCCTTGGT
58.395
50.000
0.00
0.00
0.00
3.67
3341
7895
0.881118
CCAACGACATGGTTCCTTGG
59.119
55.000
0.00
0.00
35.65
3.61
3342
7896
1.535462
GTCCAACGACATGGTTCCTTG
59.465
52.381
0.00
3.65
41.46
3.61
3343
7897
1.142060
TGTCCAACGACATGGTTCCTT
59.858
47.619
0.00
0.00
44.20
3.36
3344
7898
0.762418
TGTCCAACGACATGGTTCCT
59.238
50.000
0.00
0.00
44.20
3.36
3345
7899
3.315765
TGTCCAACGACATGGTTCC
57.684
52.632
0.00
0.00
44.20
3.62
3356
7910
1.214367
TTTCTCGAGCGTTGTCCAAC
58.786
50.000
7.81
0.00
37.92
3.77
3357
7911
2.163818
ATTTCTCGAGCGTTGTCCAA
57.836
45.000
7.81
0.00
0.00
3.53
3358
7912
1.798223
CAATTTCTCGAGCGTTGTCCA
59.202
47.619
7.81
0.00
0.00
4.02
3359
7913
1.128692
CCAATTTCTCGAGCGTTGTCC
59.871
52.381
7.81
0.00
0.00
4.02
3360
7914
1.798813
ACCAATTTCTCGAGCGTTGTC
59.201
47.619
7.81
0.00
0.00
3.18
3361
7915
1.878953
ACCAATTTCTCGAGCGTTGT
58.121
45.000
7.81
0.00
0.00
3.32
3362
7916
2.223144
TGAACCAATTTCTCGAGCGTTG
59.777
45.455
7.81
11.72
34.97
4.10
3363
7917
2.489971
TGAACCAATTTCTCGAGCGTT
58.510
42.857
7.81
2.80
34.97
4.84
3364
7918
2.163818
TGAACCAATTTCTCGAGCGT
57.836
45.000
7.81
0.00
34.97
5.07
3365
7919
3.747099
AATGAACCAATTTCTCGAGCG
57.253
42.857
7.81
0.00
34.97
5.03
3366
7920
5.046910
TGAAATGAACCAATTTCTCGAGC
57.953
39.130
7.81
0.00
43.81
5.03
3367
7921
7.430502
GCTAATGAAATGAACCAATTTCTCGAG
59.569
37.037
5.93
5.93
43.81
4.04
3368
7922
7.094420
TGCTAATGAAATGAACCAATTTCTCGA
60.094
33.333
10.14
0.00
43.81
4.04
3369
7923
7.028962
TGCTAATGAAATGAACCAATTTCTCG
58.971
34.615
10.14
0.00
43.81
4.04
3370
7924
8.937634
ATGCTAATGAAATGAACCAATTTCTC
57.062
30.769
10.14
0.00
43.81
2.87
3373
7927
9.550406
CCATATGCTAATGAAATGAACCAATTT
57.450
29.630
0.00
0.00
32.43
1.82
3374
7928
8.152246
CCCATATGCTAATGAAATGAACCAATT
58.848
33.333
0.00
0.00
0.00
2.32
3375
7929
7.256404
CCCCATATGCTAATGAAATGAACCAAT
60.256
37.037
0.00
0.00
0.00
3.16
3376
7930
6.041865
CCCCATATGCTAATGAAATGAACCAA
59.958
38.462
0.00
0.00
0.00
3.67
3377
7931
5.539574
CCCCATATGCTAATGAAATGAACCA
59.460
40.000
0.00
0.00
0.00
3.67
3378
7932
6.029346
CCCCATATGCTAATGAAATGAACC
57.971
41.667
0.00
0.00
0.00
3.62
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.