Multiple sequence alignment - TraesCS6A01G368200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G368200 chr6A 100.000 3402 0 0 1 3402 594607538 594610939 0.000000e+00 6283.0
1 TraesCS6A01G368200 chr6A 93.015 1990 107 18 1146 3117 594652438 594654413 0.000000e+00 2876.0
2 TraesCS6A01G368200 chr6A 90.552 942 41 10 424 1329 594651726 594652655 0.000000e+00 1203.0
3 TraesCS6A01G368200 chr6A 89.163 203 19 1 1169 1368 594608640 594608842 2.030000e-62 250.0
4 TraesCS6A01G368200 chr6A 89.163 203 19 1 1103 1305 594608706 594608905 2.030000e-62 250.0
5 TraesCS6A01G368200 chr6A 88.670 203 20 1 1169 1368 594652428 594652630 9.430000e-61 244.0
6 TraesCS6A01G368200 chr6A 97.297 37 0 1 299 335 594651658 594651693 1.020000e-05 62.1
7 TraesCS6A01G368200 chr6B 86.825 2778 232 64 533 3274 679567777 679565098 0.000000e+00 2979.0
8 TraesCS6A01G368200 chr6B 87.907 1902 174 30 1340 3220 679552139 679550273 0.000000e+00 2187.0
9 TraesCS6A01G368200 chr6B 80.142 1405 177 62 533 1912 679397197 679398524 0.000000e+00 955.0
10 TraesCS6A01G368200 chr6B 86.184 304 28 7 1 293 679395488 679395788 1.970000e-82 316.0
11 TraesCS6A01G368200 chr6B 89.163 203 19 1 1169 1368 679567225 679567023 2.030000e-62 250.0
12 TraesCS6A01G368200 chr6B 86.752 234 14 2 295 526 679534104 679534322 9.430000e-61 244.0
13 TraesCS6A01G368200 chr6B 86.325 234 15 2 295 526 679396936 679397154 4.390000e-59 239.0
14 TraesCS6A01G368200 chr6B 86.058 208 19 3 1 199 679569692 679569486 7.390000e-52 215.0
15 TraesCS6A01G368200 chr6B 93.846 130 6 1 295 422 679568726 679568597 9.630000e-46 195.0
16 TraesCS6A01G368200 chr6B 92.188 128 8 1 295 420 679568084 679567957 2.700000e-41 180.0
17 TraesCS6A01G368200 chr6B 80.377 265 22 6 1 256 679532694 679532937 1.250000e-39 174.0
18 TraesCS6A01G368200 chr6B 95.238 105 5 0 422 526 679567924 679567820 2.100000e-37 167.0
19 TraesCS6A01G368200 chr6B 94.340 106 5 1 422 526 679568565 679568460 9.770000e-36 161.0
20 TraesCS6A01G368200 chr6B 94.059 101 6 0 638 738 679568315 679568215 1.630000e-33 154.0
21 TraesCS6A01G368200 chr6D 84.719 2297 233 50 533 2760 448594598 448596845 0.000000e+00 2189.0
22 TraesCS6A01G368200 chr6D 92.184 998 70 3 1340 2332 448563934 448564928 0.000000e+00 1404.0
23 TraesCS6A01G368200 chr6D 85.822 1065 111 18 1605 2656 448579823 448580860 0.000000e+00 1094.0
24 TraesCS6A01G368200 chr6D 84.318 1033 97 29 299 1287 448577249 448578260 0.000000e+00 950.0
25 TraesCS6A01G368200 chr6D 89.078 293 24 2 1 293 448562175 448562459 1.160000e-94 357.0
26 TraesCS6A01G368200 chr6D 87.171 304 30 3 1 295 448576467 448576770 1.510000e-88 337.0
27 TraesCS6A01G368200 chr6D 86.404 228 27 2 1103 1329 448595216 448595440 2.620000e-61 246.0
28 TraesCS6A01G368200 chr6D 93.333 45 3 0 479 523 448594508 448594552 2.190000e-07 67.6
29 TraesCS6A01G368200 chrUn 83.166 1194 152 24 1594 2767 79404540 79405704 0.000000e+00 1046.0
30 TraesCS6A01G368200 chrUn 82.476 1050 138 22 1736 2767 79378408 79379429 0.000000e+00 878.0
31 TraesCS6A01G368200 chrUn 86.710 617 66 10 1231 1839 472326640 472326032 0.000000e+00 671.0
32 TraesCS6A01G368200 chrUn 86.752 234 14 2 295 526 79375218 79375436 9.430000e-61 244.0
33 TraesCS6A01G368200 chrUn 86.752 234 14 2 295 526 79401840 79402058 9.430000e-61 244.0
34 TraesCS6A01G368200 chrUn 81.908 304 24 7 1 295 79373787 79374068 9.500000e-56 228.0
35 TraesCS6A01G368200 chrUn 81.908 304 24 7 1 295 79400411 79400692 9.500000e-56 228.0
36 TraesCS6A01G368200 chrUn 88.550 131 6 1 3280 3401 323149509 323149379 2.110000e-32 150.0
37 TraesCS6A01G368200 chrUn 88.550 131 6 1 3280 3401 346989201 346989071 2.110000e-32 150.0
38 TraesCS6A01G368200 chr2D 83.446 737 113 7 1609 2342 97282021 97282751 0.000000e+00 676.0
39 TraesCS6A01G368200 chr2A 83.016 736 118 5 1609 2342 96092335 96093065 0.000000e+00 660.0
40 TraesCS6A01G368200 chr7A 90.608 181 17 0 986 1166 602927666 602927486 1.220000e-59 241.0
41 TraesCS6A01G368200 chr7D 94.309 123 7 0 3280 3402 366720822 366720700 4.480000e-44 189.0
42 TraesCS6A01G368200 chr3D 89.362 141 6 1 3271 3402 415718489 415718629 5.840000e-38 169.0
43 TraesCS6A01G368200 chr3D 89.394 132 5 1 3280 3402 569156279 569156148 1.260000e-34 158.0
44 TraesCS6A01G368200 chr3D 88.636 132 6 1 3280 3402 120736168 120736299 5.880000e-33 152.0
45 TraesCS6A01G368200 chr5A 83.146 178 24 6 121 295 421831520 421831346 1.260000e-34 158.0
46 TraesCS6A01G368200 chr5A 94.681 94 5 0 3278 3371 603011226 603011133 2.740000e-31 147.0
47 TraesCS6A01G368200 chr4B 87.879 132 7 1 3280 3402 346130736 346130867 2.740000e-31 147.0
48 TraesCS6A01G368200 chr4B 82.635 167 22 6 130 293 522676233 522676071 1.270000e-29 141.0
49 TraesCS6A01G368200 chr5B 81.356 177 29 4 121 295 375641836 375641662 1.270000e-29 141.0
50 TraesCS6A01G368200 chr1A 84.848 132 10 2 3280 3402 453781521 453781651 1.280000e-24 124.0
51 TraesCS6A01G368200 chr3B 76.282 156 30 4 127 281 419967915 419967766 3.640000e-10 76.8
52 TraesCS6A01G368200 chr3B 91.111 45 4 0 1466 1510 545494567 545494611 1.020000e-05 62.1
53 TraesCS6A01G368200 chr3A 94.872 39 2 0 1472 1510 531897138 531897100 1.020000e-05 62.1
54 TraesCS6A01G368200 chr4A 92.683 41 2 1 2980 3019 662253608 662253648 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G368200 chr6A 594607538 594610939 3401 False 2261.000000 6283 92.775333 1 3402 3 chr6A.!!$F1 3401
1 TraesCS6A01G368200 chr6A 594651658 594654413 2755 False 1096.275000 2876 92.383500 299 3117 4 chr6A.!!$F2 2818
2 TraesCS6A01G368200 chr6B 679550273 679552139 1866 True 2187.000000 2187 87.907000 1340 3220 1 chr6B.!!$R1 1880
3 TraesCS6A01G368200 chr6B 679565098 679569692 4594 True 537.625000 2979 91.464625 1 3274 8 chr6B.!!$R2 3273
4 TraesCS6A01G368200 chr6B 679395488 679398524 3036 False 503.333333 955 84.217000 1 1912 3 chr6B.!!$F1 1911
5 TraesCS6A01G368200 chr6B 679532694 679534322 1628 False 209.000000 244 83.564500 1 526 2 chr6B.!!$F2 525
6 TraesCS6A01G368200 chr6D 448562175 448564928 2753 False 880.500000 1404 90.631000 1 2332 2 chr6D.!!$F1 2331
7 TraesCS6A01G368200 chr6D 448594508 448596845 2337 False 834.200000 2189 88.152000 479 2760 3 chr6D.!!$F3 2281
8 TraesCS6A01G368200 chr6D 448576467 448580860 4393 False 793.666667 1094 85.770333 1 2656 3 chr6D.!!$F2 2655
9 TraesCS6A01G368200 chrUn 472326032 472326640 608 True 671.000000 671 86.710000 1231 1839 1 chrUn.!!$R3 608
10 TraesCS6A01G368200 chrUn 79400411 79405704 5293 False 506.000000 1046 83.942000 1 2767 3 chrUn.!!$F2 2766
11 TraesCS6A01G368200 chrUn 79373787 79379429 5642 False 450.000000 878 83.712000 1 2767 3 chrUn.!!$F1 2766
12 TraesCS6A01G368200 chr2D 97282021 97282751 730 False 676.000000 676 83.446000 1609 2342 1 chr2D.!!$F1 733
13 TraesCS6A01G368200 chr2A 96092335 96093065 730 False 660.000000 660 83.016000 1609 2342 1 chr2A.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 2226 0.10509 TACTACCACCACCACCACCA 60.105 55.0 0.0 0.0 0.00 4.17 F
1633 6150 0.17576 GTGATGCCTCCGTGCTTCTA 59.824 55.0 0.0 0.0 36.62 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 6504 0.108186 AGCAATGCGAGATTCCGACA 60.108 50.0 0.0 0.0 0.0 4.35 R
3301 7855 0.028770 CAGCGTTTTCTTCCGTTGCA 59.971 50.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.112725 GTTTGGTCAAACTAGAGGTACTTTTAA 57.887 33.333 16.61 0.00 45.26 1.52
84 85 7.275920 ACAGGAACCTTATATGCAGACTAAAG 58.724 38.462 0.00 0.00 0.00 1.85
151 163 0.537371 CCGTCCCCAAATAGATGGCC 60.537 60.000 0.00 0.00 39.26 5.36
193 234 7.545362 AGTCAATGATTTCTAAATCTGACCG 57.455 36.000 21.91 8.30 43.93 4.79
343 1843 1.482182 TCTCCAATGATCACCCTCACG 59.518 52.381 0.00 0.00 0.00 4.35
347 1847 2.093181 CCAATGATCACCCTCACGGTAA 60.093 50.000 0.00 0.00 46.14 2.85
466 2004 4.527038 AGCTAGCTGTTAACTGTTGGTCTA 59.473 41.667 18.57 5.75 0.00 2.59
558 2132 2.169144 TGAGTGTACATGCTCATCCAGG 59.831 50.000 11.14 0.00 36.89 4.45
562 2136 4.009675 GTGTACATGCTCATCCAGGAAAA 58.990 43.478 0.00 0.00 0.00 2.29
563 2137 4.009675 TGTACATGCTCATCCAGGAAAAC 58.990 43.478 0.00 0.00 0.00 2.43
574 2149 0.307760 CAGGAAAACGTGTGCAGTCC 59.692 55.000 0.00 0.00 0.00 3.85
596 2171 0.322456 CGGCAGTTTCCCATTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
616 2210 8.043429 TCTCCAGGCTAAATACTACTACTACT 57.957 38.462 0.00 0.00 0.00 2.57
617 2211 9.163894 TCTCCAGGCTAAATACTACTACTACTA 57.836 37.037 0.00 0.00 0.00 1.82
618 2212 9.218440 CTCCAGGCTAAATACTACTACTACTAC 57.782 40.741 0.00 0.00 0.00 2.73
619 2213 8.160106 TCCAGGCTAAATACTACTACTACTACC 58.840 40.741 0.00 0.00 0.00 3.18
620 2214 7.941238 CCAGGCTAAATACTACTACTACTACCA 59.059 40.741 0.00 0.00 0.00 3.25
621 2215 8.782144 CAGGCTAAATACTACTACTACTACCAC 58.218 40.741 0.00 0.00 0.00 4.16
622 2216 7.941790 AGGCTAAATACTACTACTACTACCACC 59.058 40.741 0.00 0.00 0.00 4.61
623 2217 7.721399 GGCTAAATACTACTACTACTACCACCA 59.279 40.741 0.00 0.00 0.00 4.17
624 2218 8.563732 GCTAAATACTACTACTACTACCACCAC 58.436 40.741 0.00 0.00 0.00 4.16
625 2219 7.888250 AAATACTACTACTACTACCACCACC 57.112 40.000 0.00 0.00 0.00 4.61
626 2220 4.934797 ACTACTACTACTACCACCACCA 57.065 45.455 0.00 0.00 0.00 4.17
627 2221 4.593956 ACTACTACTACTACCACCACCAC 58.406 47.826 0.00 0.00 0.00 4.16
628 2222 2.812658 ACTACTACTACCACCACCACC 58.187 52.381 0.00 0.00 0.00 4.61
629 2223 2.110543 ACTACTACTACCACCACCACCA 59.889 50.000 0.00 0.00 0.00 4.17
630 2224 1.345063 ACTACTACCACCACCACCAC 58.655 55.000 0.00 0.00 0.00 4.16
631 2225 0.611714 CTACTACCACCACCACCACC 59.388 60.000 0.00 0.00 0.00 4.61
632 2226 0.105090 TACTACCACCACCACCACCA 60.105 55.000 0.00 0.00 0.00 4.17
633 2227 1.072505 CTACCACCACCACCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
634 2228 2.406002 CTACCACCACCACCACCACC 62.406 65.000 0.00 0.00 0.00 4.61
635 2229 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
636 2230 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
637 2231 1.603455 CACCACCACCACCACCATC 60.603 63.158 0.00 0.00 0.00 3.51
638 2232 2.081787 ACCACCACCACCACCATCA 61.082 57.895 0.00 0.00 0.00 3.07
639 2233 1.603455 CCACCACCACCACCATCAC 60.603 63.158 0.00 0.00 0.00 3.06
640 2234 1.603455 CACCACCACCACCATCACC 60.603 63.158 0.00 0.00 0.00 4.02
641 2235 2.081787 ACCACCACCACCATCACCA 61.082 57.895 0.00 0.00 0.00 4.17
642 2236 1.603455 CCACCACCACCATCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
643 2237 1.603455 CACCACCACCATCACCACC 60.603 63.158 0.00 0.00 0.00 4.61
644 2238 2.081787 ACCACCACCATCACCACCA 61.082 57.895 0.00 0.00 0.00 4.17
645 2239 1.603455 CCACCACCATCACCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
651 2251 1.303561 CCATCACCACCACCACCAG 60.304 63.158 0.00 0.00 0.00 4.00
886 2543 1.001974 CCCACGTTTGTCATCCAGAGA 59.998 52.381 0.00 0.00 0.00 3.10
897 2554 2.091444 TCATCCAGAGATCAGGCTCTCA 60.091 50.000 5.21 0.00 43.15 3.27
921 2578 4.314121 CCTTGGAGCTAGCTTGCTATAAG 58.686 47.826 22.70 24.32 44.17 1.73
970 2641 3.884895 TCAGTCCATCACAACAAACACT 58.115 40.909 0.00 0.00 0.00 3.55
1173 2970 0.976073 CTCCACCATACACCCCGAGT 60.976 60.000 0.00 0.00 0.00 4.18
1337 4474 4.796495 CGCCCCAGCTACCCCAAC 62.796 72.222 0.00 0.00 36.60 3.77
1338 4475 3.339093 GCCCCAGCTACCCCAACT 61.339 66.667 0.00 0.00 35.50 3.16
1339 4476 2.998949 CCCCAGCTACCCCAACTC 59.001 66.667 0.00 0.00 0.00 3.01
1340 4477 2.680370 CCCCAGCTACCCCAACTCC 61.680 68.421 0.00 0.00 0.00 3.85
1341 4478 1.616628 CCCAGCTACCCCAACTCCT 60.617 63.158 0.00 0.00 0.00 3.69
1342 4479 1.627297 CCCAGCTACCCCAACTCCTC 61.627 65.000 0.00 0.00 0.00 3.71
1343 4480 1.627297 CCAGCTACCCCAACTCCTCC 61.627 65.000 0.00 0.00 0.00 4.30
1344 4481 1.686110 AGCTACCCCAACTCCTCCG 60.686 63.158 0.00 0.00 0.00 4.63
1345 4482 2.901042 CTACCCCAACTCCTCCGC 59.099 66.667 0.00 0.00 0.00 5.54
1346 4483 2.686106 TACCCCAACTCCTCCGCC 60.686 66.667 0.00 0.00 0.00 6.13
1370 4507 4.033776 CACCCCGAGCACACCCAT 62.034 66.667 0.00 0.00 0.00 4.00
1388 4525 1.592400 ATCAAAGGACTCGCGGTCGA 61.592 55.000 17.56 11.48 45.35 4.20
1431 4568 1.014044 GCGCGGAAGACATTGTGAGA 61.014 55.000 8.83 0.00 0.00 3.27
1581 6093 8.877779 GTCATGAAATATATGTAGGCTGATGTC 58.122 37.037 0.00 0.00 0.00 3.06
1633 6150 0.175760 GTGATGCCTCCGTGCTTCTA 59.824 55.000 0.00 0.00 36.62 2.10
1972 6489 0.750546 CCGACGAGATGGTCACCCTA 60.751 60.000 0.00 0.00 36.73 3.53
1987 6504 0.615331 CCCTATCTGGTGCACACACT 59.385 55.000 20.43 2.76 46.57 3.55
1999 6516 1.340658 CACACACTGTCGGAATCTCG 58.659 55.000 0.00 0.00 0.00 4.04
2440 6958 5.088739 CACATCATCGCTAGTTTTTCAACC 58.911 41.667 0.00 0.00 32.70 3.77
2754 7295 5.220796 GGGCTTCTTCGCTTATTAAATTCGT 60.221 40.000 0.00 0.00 0.00 3.85
2868 7418 5.933463 ACAACATGCAACCATCCATTTAAAG 59.067 36.000 0.00 0.00 0.00 1.85
2872 7422 4.819769 TGCAACCATCCATTTAAAGAAGC 58.180 39.130 0.00 0.00 0.00 3.86
2873 7423 4.183865 GCAACCATCCATTTAAAGAAGCC 58.816 43.478 0.00 0.00 0.00 4.35
2923 7474 7.178712 AGCATTTCGTACTATTGTGCTAATC 57.821 36.000 7.54 0.00 39.43 1.75
3090 7643 1.878775 GCATGGGGCATTATCTCGC 59.121 57.895 0.00 0.00 43.97 5.03
3133 7686 9.653516 TCTCCACTAATCTATTTCTCTCAAGAT 57.346 33.333 0.00 0.00 0.00 2.40
3147 7700 6.291377 TCTCTCAAGATACAAATATGCCACC 58.709 40.000 0.00 0.00 0.00 4.61
3149 7702 7.290014 TCTCTCAAGATACAAATATGCCACCTA 59.710 37.037 0.00 0.00 0.00 3.08
3214 7767 6.956497 AGGCTCATCTATTTTCCATCCTATC 58.044 40.000 0.00 0.00 0.00 2.08
3220 7773 8.388589 TCATCTATTTTCCATCCTATCATGCTT 58.611 33.333 0.00 0.00 0.00 3.91
3302 7856 2.015627 CACAAATGCCCGTGCGTTG 61.016 57.895 0.00 1.29 45.88 4.10
3303 7857 3.105157 CAAATGCCCGTGCGTTGC 61.105 61.111 0.00 0.00 45.88 4.17
3304 7858 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
3305 7859 3.144120 AAATGCCCGTGCGTTGCAA 62.144 52.632 0.00 0.00 45.88 4.08
3306 7860 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
3318 7872 0.843872 GTTGCAACGGAAGAAAACGC 59.156 50.000 14.90 0.00 0.00 4.84
3319 7873 0.736053 TTGCAACGGAAGAAAACGCT 59.264 45.000 0.00 0.00 0.00 5.07
3320 7874 0.028770 TGCAACGGAAGAAAACGCTG 59.971 50.000 0.00 0.00 0.00 5.18
3321 7875 0.660300 GCAACGGAAGAAAACGCTGG 60.660 55.000 0.00 0.00 0.00 4.85
3322 7876 0.661020 CAACGGAAGAAAACGCTGGT 59.339 50.000 0.00 0.00 0.00 4.00
3323 7877 1.064952 CAACGGAAGAAAACGCTGGTT 59.935 47.619 0.00 0.00 38.22 3.67
3324 7878 0.942252 ACGGAAGAAAACGCTGGTTC 59.058 50.000 0.00 0.00 34.62 3.62
3325 7879 0.237498 CGGAAGAAAACGCTGGTTCC 59.763 55.000 0.00 0.00 34.62 3.62
3326 7880 1.605753 GGAAGAAAACGCTGGTTCCT 58.394 50.000 0.00 0.00 34.62 3.36
3327 7881 2.774687 GGAAGAAAACGCTGGTTCCTA 58.225 47.619 0.00 0.00 34.62 2.94
3328 7882 3.344515 GGAAGAAAACGCTGGTTCCTAT 58.655 45.455 0.00 0.00 34.62 2.57
3329 7883 3.127030 GGAAGAAAACGCTGGTTCCTATG 59.873 47.826 0.00 0.00 34.62 2.23
3330 7884 3.695830 AGAAAACGCTGGTTCCTATGA 57.304 42.857 0.00 0.00 34.62 2.15
3331 7885 4.015872 AGAAAACGCTGGTTCCTATGAA 57.984 40.909 0.00 0.00 34.62 2.57
3332 7886 4.589908 AGAAAACGCTGGTTCCTATGAAT 58.410 39.130 0.00 0.00 34.62 2.57
3333 7887 4.636206 AGAAAACGCTGGTTCCTATGAATC 59.364 41.667 0.00 0.00 34.62 2.52
3334 7888 3.914426 AACGCTGGTTCCTATGAATCT 57.086 42.857 0.00 0.00 32.53 2.40
3335 7889 3.185246 ACGCTGGTTCCTATGAATCTG 57.815 47.619 0.00 0.00 34.61 2.90
3336 7890 1.869767 CGCTGGTTCCTATGAATCTGC 59.130 52.381 11.27 11.27 46.96 4.26
3337 7891 2.225467 GCTGGTTCCTATGAATCTGCC 58.775 52.381 10.49 0.00 45.61 4.85
3338 7892 2.421952 GCTGGTTCCTATGAATCTGCCA 60.422 50.000 10.49 1.03 45.61 4.92
3339 7893 3.474600 CTGGTTCCTATGAATCTGCCAG 58.525 50.000 0.00 0.00 35.76 4.85
3340 7894 3.114606 TGGTTCCTATGAATCTGCCAGA 58.885 45.455 0.00 0.00 32.53 3.86
3341 7895 3.118261 TGGTTCCTATGAATCTGCCAGAC 60.118 47.826 0.00 0.00 32.53 3.51
3342 7896 3.471680 GTTCCTATGAATCTGCCAGACC 58.528 50.000 0.00 0.00 31.98 3.85
3343 7897 2.763039 TCCTATGAATCTGCCAGACCA 58.237 47.619 0.00 0.00 0.00 4.02
3344 7898 3.114606 TCCTATGAATCTGCCAGACCAA 58.885 45.455 0.00 0.00 0.00 3.67
3345 7899 3.135348 TCCTATGAATCTGCCAGACCAAG 59.865 47.826 0.00 0.08 0.00 3.61
3346 7900 2.431954 ATGAATCTGCCAGACCAAGG 57.568 50.000 0.00 0.00 0.00 3.61
3347 7901 1.361204 TGAATCTGCCAGACCAAGGA 58.639 50.000 0.00 0.00 0.00 3.36
3348 7902 1.704628 TGAATCTGCCAGACCAAGGAA 59.295 47.619 0.00 0.00 0.00 3.36
3349 7903 2.087646 GAATCTGCCAGACCAAGGAAC 58.912 52.381 0.00 0.00 0.00 3.62
3350 7904 0.329596 ATCTGCCAGACCAAGGAACC 59.670 55.000 0.00 0.00 0.00 3.62
3351 7905 1.059584 TCTGCCAGACCAAGGAACCA 61.060 55.000 0.00 0.00 0.00 3.67
3352 7906 0.038744 CTGCCAGACCAAGGAACCAT 59.961 55.000 0.00 0.00 0.00 3.55
3353 7907 0.251297 TGCCAGACCAAGGAACCATG 60.251 55.000 0.00 0.00 0.00 3.66
3354 7908 0.251341 GCCAGACCAAGGAACCATGT 60.251 55.000 0.00 0.00 0.00 3.21
3355 7909 1.826385 CCAGACCAAGGAACCATGTC 58.174 55.000 0.00 0.00 0.00 3.06
3356 7910 1.442769 CAGACCAAGGAACCATGTCG 58.557 55.000 0.00 0.00 0.00 4.35
3357 7911 1.056660 AGACCAAGGAACCATGTCGT 58.943 50.000 0.00 0.00 0.00 4.34
3358 7912 1.420138 AGACCAAGGAACCATGTCGTT 59.580 47.619 0.00 0.00 0.00 3.85
3359 7913 1.535462 GACCAAGGAACCATGTCGTTG 59.465 52.381 10.30 10.30 41.10 4.10
3361 7915 1.890876 CAAGGAACCATGTCGTTGGA 58.109 50.000 9.67 0.00 38.91 3.53
3362 7916 1.535462 CAAGGAACCATGTCGTTGGAC 59.465 52.381 9.67 0.00 43.71 4.02
3373 7927 4.647654 GTTGGACAACGCTCGAGA 57.352 55.556 18.75 0.00 0.00 4.04
3374 7928 2.895039 GTTGGACAACGCTCGAGAA 58.105 52.632 18.75 0.00 0.00 2.87
3375 7929 1.214367 GTTGGACAACGCTCGAGAAA 58.786 50.000 18.75 0.00 0.00 2.52
3376 7930 1.798813 GTTGGACAACGCTCGAGAAAT 59.201 47.619 18.75 0.00 0.00 2.17
3377 7931 2.163818 TGGACAACGCTCGAGAAATT 57.836 45.000 18.75 3.33 0.00 1.82
3378 7932 1.798223 TGGACAACGCTCGAGAAATTG 59.202 47.619 18.75 17.82 0.00 2.32
3379 7933 1.128692 GGACAACGCTCGAGAAATTGG 59.871 52.381 18.75 2.10 0.00 3.16
3380 7934 1.798813 GACAACGCTCGAGAAATTGGT 59.201 47.619 18.75 5.60 0.00 3.67
3381 7935 2.218603 ACAACGCTCGAGAAATTGGTT 58.781 42.857 18.75 6.60 0.00 3.67
3382 7936 2.223377 ACAACGCTCGAGAAATTGGTTC 59.777 45.455 18.75 0.00 36.38 3.62
3383 7937 2.163818 ACGCTCGAGAAATTGGTTCA 57.836 45.000 18.75 0.00 38.86 3.18
3384 7938 2.699954 ACGCTCGAGAAATTGGTTCAT 58.300 42.857 18.75 0.00 38.86 2.57
3385 7939 3.074412 ACGCTCGAGAAATTGGTTCATT 58.926 40.909 18.75 0.00 38.86 2.57
3386 7940 3.502211 ACGCTCGAGAAATTGGTTCATTT 59.498 39.130 18.75 0.00 38.86 2.32
3387 7941 4.091424 CGCTCGAGAAATTGGTTCATTTC 58.909 43.478 18.75 0.00 38.86 2.17
3388 7942 4.378356 CGCTCGAGAAATTGGTTCATTTCA 60.378 41.667 18.75 0.00 38.86 2.69
3389 7943 5.644644 GCTCGAGAAATTGGTTCATTTCAT 58.355 37.500 18.75 0.00 38.86 2.57
3390 7944 6.095377 GCTCGAGAAATTGGTTCATTTCATT 58.905 36.000 18.75 0.00 38.86 2.57
3391 7945 7.250569 GCTCGAGAAATTGGTTCATTTCATTA 58.749 34.615 18.75 0.00 38.86 1.90
3392 7946 7.430502 GCTCGAGAAATTGGTTCATTTCATTAG 59.569 37.037 18.75 4.14 38.86 1.73
3393 7947 7.250569 TCGAGAAATTGGTTCATTTCATTAGC 58.749 34.615 8.47 0.00 38.86 3.09
3394 7948 7.028962 CGAGAAATTGGTTCATTTCATTAGCA 58.971 34.615 8.47 0.00 38.86 3.49
3395 7949 7.703621 CGAGAAATTGGTTCATTTCATTAGCAT 59.296 33.333 8.47 0.00 38.86 3.79
3399 7953 9.550406 AAATTGGTTCATTTCATTAGCATATGG 57.450 29.630 4.56 0.00 0.00 2.74
3400 7954 6.653526 TGGTTCATTTCATTAGCATATGGG 57.346 37.500 4.56 0.00 0.00 4.00
3401 7955 5.539574 TGGTTCATTTCATTAGCATATGGGG 59.460 40.000 4.56 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.380423 AGTCTGCATATAAGGTTCCTGTTAT 57.620 36.000 0.00 0.00 0.00 1.89
58 59 5.700402 AGTCTGCATATAAGGTTCCTGTT 57.300 39.130 0.00 0.00 0.00 3.16
60 61 6.708054 CCTTTAGTCTGCATATAAGGTTCCTG 59.292 42.308 0.00 0.00 0.00 3.86
63 64 7.272978 TCACCTTTAGTCTGCATATAAGGTTC 58.727 38.462 13.12 0.00 41.82 3.62
66 67 6.821388 ACTCACCTTTAGTCTGCATATAAGG 58.179 40.000 10.08 10.08 38.44 2.69
84 85 2.426024 TCAGCTTGGTACGATACTCACC 59.574 50.000 0.00 0.00 0.00 4.02
177 189 4.762289 AGGCTCGGTCAGATTTAGAAAT 57.238 40.909 0.00 0.00 0.00 2.17
187 228 8.873830 CATTTATTTACATATAGGCTCGGTCAG 58.126 37.037 0.00 0.00 0.00 3.51
286 327 0.392461 ATTGCGCGGGTCAACTACAT 60.392 50.000 8.83 0.00 0.00 2.29
343 1843 1.389106 GATGTCAGTGCGTCGTTTACC 59.611 52.381 0.00 0.00 0.00 2.85
347 1847 1.070821 CATGATGTCAGTGCGTCGTT 58.929 50.000 0.00 0.00 0.00 3.85
432 1970 1.270305 ACAGCTAGCTCGTTCAAGCAA 60.270 47.619 16.15 0.00 45.00 3.91
466 2004 9.601217 CTACTAATCAAGTTGCCAACTAGTAAT 57.399 33.333 11.10 0.00 41.91 1.89
558 2132 1.398451 CGATGGACTGCACACGTTTTC 60.398 52.381 0.00 0.00 0.00 2.29
562 2136 2.048222 CCGATGGACTGCACACGT 60.048 61.111 0.00 0.00 0.00 4.49
563 2137 3.490759 GCCGATGGACTGCACACG 61.491 66.667 0.00 0.00 0.00 4.49
574 2149 1.672881 GAGAATGGGAAACTGCCGATG 59.327 52.381 0.00 0.00 0.00 3.84
596 2171 7.941790 GGTGGTAGTAGTAGTAGTATTTAGCCT 59.058 40.741 0.00 0.00 0.00 4.58
616 2210 2.453812 GGTGGTGGTGGTGGTGGTA 61.454 63.158 0.00 0.00 0.00 3.25
617 2211 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
618 2212 3.145473 ATGGTGGTGGTGGTGGTGG 62.145 63.158 0.00 0.00 0.00 4.61
619 2213 1.603455 GATGGTGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
620 2214 2.081787 TGATGGTGGTGGTGGTGGT 61.082 57.895 0.00 0.00 0.00 4.16
621 2215 1.603455 GTGATGGTGGTGGTGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
622 2216 1.603455 GGTGATGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
623 2217 2.081787 TGGTGATGGTGGTGGTGGT 61.082 57.895 0.00 0.00 0.00 4.16
624 2218 1.603455 GTGGTGATGGTGGTGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
625 2219 1.603455 GGTGGTGATGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
626 2220 2.081787 TGGTGGTGATGGTGGTGGT 61.082 57.895 0.00 0.00 0.00 4.16
627 2221 1.603455 GTGGTGGTGATGGTGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
628 2222 1.603455 GGTGGTGGTGATGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
629 2223 2.081787 TGGTGGTGGTGATGGTGGT 61.082 57.895 0.00 0.00 0.00 4.16
630 2224 1.603455 GTGGTGGTGGTGATGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
631 2225 1.603455 GGTGGTGGTGGTGATGGTG 60.603 63.158 0.00 0.00 0.00 4.17
632 2226 2.067932 CTGGTGGTGGTGGTGATGGT 62.068 60.000 0.00 0.00 0.00 3.55
633 2227 1.303561 CTGGTGGTGGTGGTGATGG 60.304 63.158 0.00 0.00 0.00 3.51
634 2228 0.690192 TACTGGTGGTGGTGGTGATG 59.310 55.000 0.00 0.00 0.00 3.07
635 2229 1.440618 TTACTGGTGGTGGTGGTGAT 58.559 50.000 0.00 0.00 0.00 3.06
636 2230 1.440618 ATTACTGGTGGTGGTGGTGA 58.559 50.000 0.00 0.00 0.00 4.02
637 2231 2.304761 AGTATTACTGGTGGTGGTGGTG 59.695 50.000 0.00 0.00 0.00 4.17
638 2232 2.627933 AGTATTACTGGTGGTGGTGGT 58.372 47.619 0.00 0.00 0.00 4.16
639 2233 4.829872 TTAGTATTACTGGTGGTGGTGG 57.170 45.455 6.60 0.00 0.00 4.61
640 2234 6.235231 AGATTAGTATTACTGGTGGTGGTG 57.765 41.667 6.60 0.00 0.00 4.17
641 2235 7.983166 TTAGATTAGTATTACTGGTGGTGGT 57.017 36.000 6.60 0.00 0.00 4.16
642 2236 9.490379 GAATTAGATTAGTATTACTGGTGGTGG 57.510 37.037 6.60 0.00 0.00 4.61
643 2237 9.193133 CGAATTAGATTAGTATTACTGGTGGTG 57.807 37.037 6.60 0.00 0.00 4.17
644 2238 7.871463 GCGAATTAGATTAGTATTACTGGTGGT 59.129 37.037 6.60 0.00 0.00 4.16
645 2239 8.088981 AGCGAATTAGATTAGTATTACTGGTGG 58.911 37.037 6.60 0.00 0.00 4.61
897 2554 1.204113 AGCAAGCTAGCTCCAAGGGT 61.204 55.000 19.65 8.31 42.18 4.34
921 2578 4.099170 CGCTGCTCTGCCTGCAAC 62.099 66.667 0.00 0.00 40.13 4.17
996 2667 2.124736 GCGAGCTTGGCCATGGTA 60.125 61.111 21.96 0.00 0.00 3.25
1173 2970 0.682209 GCGGTGGAGGACTAGGTGTA 60.682 60.000 0.00 0.00 0.00 2.90
1321 4458 3.339093 AGTTGGGGTAGCTGGGGC 61.339 66.667 0.00 0.00 39.06 5.80
1322 4459 2.680370 GGAGTTGGGGTAGCTGGGG 61.680 68.421 0.00 0.00 0.00 4.96
1323 4460 1.616628 AGGAGTTGGGGTAGCTGGG 60.617 63.158 0.00 0.00 0.00 4.45
1324 4461 1.627297 GGAGGAGTTGGGGTAGCTGG 61.627 65.000 0.00 0.00 0.00 4.85
1325 4462 1.908483 GGAGGAGTTGGGGTAGCTG 59.092 63.158 0.00 0.00 0.00 4.24
1326 4463 1.686110 CGGAGGAGTTGGGGTAGCT 60.686 63.158 0.00 0.00 0.00 3.32
1327 4464 2.901042 CGGAGGAGTTGGGGTAGC 59.099 66.667 0.00 0.00 0.00 3.58
1328 4465 2.732619 GGCGGAGGAGTTGGGGTAG 61.733 68.421 0.00 0.00 0.00 3.18
1329 4466 2.686106 GGCGGAGGAGTTGGGGTA 60.686 66.667 0.00 0.00 0.00 3.69
1351 4488 3.315949 GGGTGTGCTCGGGGTGTA 61.316 66.667 0.00 0.00 0.00 2.90
1363 4500 0.321653 GCGAGTCCTTTGATGGGTGT 60.322 55.000 0.00 0.00 0.00 4.16
1370 4507 2.257371 CGACCGCGAGTCCTTTGA 59.743 61.111 8.23 0.00 43.08 2.69
1388 4525 4.097418 AGGGCATGACTTCTTGTAGTAGT 58.903 43.478 0.00 0.00 0.00 2.73
1431 4568 0.534877 TGGCATCACGCACAACTTCT 60.535 50.000 0.00 0.00 45.17 2.85
1581 6093 3.719173 AAACCATTAAACACCACACGG 57.281 42.857 0.00 0.00 38.77 4.94
1633 6150 1.352352 CTGTTGGGGTCCACTTGATCT 59.648 52.381 0.00 0.00 30.78 2.75
1972 6489 0.601046 CGACAGTGTGTGCACCAGAT 60.601 55.000 15.69 1.11 46.35 2.90
1987 6504 0.108186 AGCAATGCGAGATTCCGACA 60.108 50.000 0.00 0.00 0.00 4.35
1999 6516 1.129437 GAGTTGAAGGACGAGCAATGC 59.871 52.381 0.00 0.00 0.00 3.56
2440 6958 5.174761 GCACGAGCTTATTCTCAATCTACTG 59.825 44.000 0.00 0.00 37.91 2.74
2645 7185 7.760340 CACCTAGGAACACAGTAAGAGAATTAC 59.240 40.741 17.98 0.00 0.00 1.89
2656 7196 6.183361 ACAATAGAAACACCTAGGAACACAGT 60.183 38.462 17.98 0.92 0.00 3.55
3153 7706 5.710513 TTGCATGTTTATATGGCATCTCC 57.289 39.130 1.65 0.00 0.00 3.71
3154 7707 9.297586 CATATTTGCATGTTTATATGGCATCTC 57.702 33.333 1.65 0.00 30.79 2.75
3184 7737 7.147846 GGATGGAAAATAGATGAGCCTTTTCAA 60.148 37.037 7.91 0.00 38.65 2.69
3185 7738 6.322201 GGATGGAAAATAGATGAGCCTTTTCA 59.678 38.462 7.91 0.00 38.65 2.69
3192 7745 7.201714 GCATGATAGGATGGAAAATAGATGAGC 60.202 40.741 0.00 0.00 0.00 4.26
3197 7750 7.982252 AGAAGCATGATAGGATGGAAAATAGA 58.018 34.615 0.00 0.00 0.00 1.98
3270 7824 5.997746 GGGCATTTGTGCTAGTATGAGATAA 59.002 40.000 0.07 0.00 34.73 1.75
3274 7828 2.545526 CGGGCATTTGTGCTAGTATGAG 59.454 50.000 0.07 0.00 34.73 2.90
3275 7829 2.093181 ACGGGCATTTGTGCTAGTATGA 60.093 45.455 0.07 0.00 34.73 2.15
3276 7830 2.032054 CACGGGCATTTGTGCTAGTATG 59.968 50.000 0.07 0.00 34.73 2.39
3277 7831 2.288666 CACGGGCATTTGTGCTAGTAT 58.711 47.619 0.07 0.00 34.73 2.12
3278 7832 1.732941 CACGGGCATTTGTGCTAGTA 58.267 50.000 0.07 0.00 34.73 1.82
3279 7833 2.555123 CACGGGCATTTGTGCTAGT 58.445 52.632 0.07 0.00 34.73 2.57
3284 7838 2.015627 CAACGCACGGGCATTTGTG 61.016 57.895 11.77 0.00 41.24 3.33
3285 7839 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
3286 7840 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
3287 7841 3.144120 TTGCAACGCACGGGCATTT 62.144 52.632 11.77 0.00 38.71 2.32
3288 7842 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
3289 7843 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3299 7853 0.843872 GCGTTTTCTTCCGTTGCAAC 59.156 50.000 19.89 19.89 0.00 4.17
3300 7854 0.736053 AGCGTTTTCTTCCGTTGCAA 59.264 45.000 0.00 0.00 0.00 4.08
3301 7855 0.028770 CAGCGTTTTCTTCCGTTGCA 59.971 50.000 0.00 0.00 0.00 4.08
3302 7856 0.660300 CCAGCGTTTTCTTCCGTTGC 60.660 55.000 0.00 0.00 34.52 4.17
3303 7857 0.661020 ACCAGCGTTTTCTTCCGTTG 59.339 50.000 0.00 0.00 35.44 4.10
3304 7858 1.332686 GAACCAGCGTTTTCTTCCGTT 59.667 47.619 0.00 0.00 30.30 4.44
3305 7859 0.942252 GAACCAGCGTTTTCTTCCGT 59.058 50.000 0.00 0.00 30.30 4.69
3306 7860 0.237498 GGAACCAGCGTTTTCTTCCG 59.763 55.000 0.00 0.00 30.30 4.30
3307 7861 1.605753 AGGAACCAGCGTTTTCTTCC 58.394 50.000 0.00 0.00 30.30 3.46
3308 7862 4.000988 TCATAGGAACCAGCGTTTTCTTC 58.999 43.478 0.00 0.00 30.30 2.87
3309 7863 4.015872 TCATAGGAACCAGCGTTTTCTT 57.984 40.909 0.00 0.00 30.30 2.52
3310 7864 3.695830 TCATAGGAACCAGCGTTTTCT 57.304 42.857 0.00 0.00 30.30 2.52
3311 7865 4.636206 AGATTCATAGGAACCAGCGTTTTC 59.364 41.667 0.00 0.00 35.46 2.29
3312 7866 4.396166 CAGATTCATAGGAACCAGCGTTTT 59.604 41.667 0.00 0.00 35.46 2.43
3313 7867 3.941483 CAGATTCATAGGAACCAGCGTTT 59.059 43.478 0.00 0.00 35.46 3.60
3314 7868 3.535561 CAGATTCATAGGAACCAGCGTT 58.464 45.455 0.00 0.00 35.46 4.84
3315 7869 2.743183 GCAGATTCATAGGAACCAGCGT 60.743 50.000 0.00 0.00 35.46 5.07
3316 7870 1.869767 GCAGATTCATAGGAACCAGCG 59.130 52.381 0.00 0.00 35.46 5.18
3317 7871 2.225467 GGCAGATTCATAGGAACCAGC 58.775 52.381 0.00 0.00 35.46 4.85
3318 7872 3.135348 TCTGGCAGATTCATAGGAACCAG 59.865 47.826 14.43 14.95 41.49 4.00
3319 7873 3.114606 TCTGGCAGATTCATAGGAACCA 58.885 45.455 14.43 0.00 35.46 3.67
3320 7874 3.471680 GTCTGGCAGATTCATAGGAACC 58.528 50.000 21.84 0.00 35.46 3.62
3321 7875 3.118261 TGGTCTGGCAGATTCATAGGAAC 60.118 47.826 21.84 3.73 35.46 3.62
3322 7876 3.114606 TGGTCTGGCAGATTCATAGGAA 58.885 45.455 21.84 0.00 37.45 3.36
3323 7877 2.763039 TGGTCTGGCAGATTCATAGGA 58.237 47.619 21.84 0.00 0.00 2.94
3324 7878 3.474600 CTTGGTCTGGCAGATTCATAGG 58.525 50.000 21.84 11.07 0.00 2.57
3325 7879 3.135348 TCCTTGGTCTGGCAGATTCATAG 59.865 47.826 21.84 18.06 0.00 2.23
3326 7880 3.114606 TCCTTGGTCTGGCAGATTCATA 58.885 45.455 21.84 11.40 0.00 2.15
3327 7881 1.918262 TCCTTGGTCTGGCAGATTCAT 59.082 47.619 21.84 0.00 0.00 2.57
3328 7882 1.361204 TCCTTGGTCTGGCAGATTCA 58.639 50.000 21.84 18.44 0.00 2.57
3329 7883 2.087646 GTTCCTTGGTCTGGCAGATTC 58.912 52.381 21.84 16.07 0.00 2.52
3330 7884 1.272147 GGTTCCTTGGTCTGGCAGATT 60.272 52.381 21.84 0.00 0.00 2.40
3331 7885 0.329596 GGTTCCTTGGTCTGGCAGAT 59.670 55.000 21.84 0.00 0.00 2.90
3332 7886 1.059584 TGGTTCCTTGGTCTGGCAGA 61.060 55.000 14.43 14.43 0.00 4.26
3333 7887 0.038744 ATGGTTCCTTGGTCTGGCAG 59.961 55.000 8.58 8.58 0.00 4.85
3334 7888 0.251297 CATGGTTCCTTGGTCTGGCA 60.251 55.000 0.00 0.00 0.00 4.92
3335 7889 0.251341 ACATGGTTCCTTGGTCTGGC 60.251 55.000 0.00 0.00 0.00 4.85
3336 7890 1.826385 GACATGGTTCCTTGGTCTGG 58.174 55.000 0.00 0.00 0.00 3.86
3337 7891 1.270839 ACGACATGGTTCCTTGGTCTG 60.271 52.381 0.00 4.93 0.00 3.51
3338 7892 1.056660 ACGACATGGTTCCTTGGTCT 58.943 50.000 0.00 0.00 0.00 3.85
3339 7893 1.535462 CAACGACATGGTTCCTTGGTC 59.465 52.381 0.00 4.55 0.00 4.02
3340 7894 1.604604 CAACGACATGGTTCCTTGGT 58.395 50.000 0.00 0.00 0.00 3.67
3341 7895 0.881118 CCAACGACATGGTTCCTTGG 59.119 55.000 0.00 0.00 35.65 3.61
3342 7896 1.535462 GTCCAACGACATGGTTCCTTG 59.465 52.381 0.00 3.65 41.46 3.61
3343 7897 1.142060 TGTCCAACGACATGGTTCCTT 59.858 47.619 0.00 0.00 44.20 3.36
3344 7898 0.762418 TGTCCAACGACATGGTTCCT 59.238 50.000 0.00 0.00 44.20 3.36
3345 7899 3.315765 TGTCCAACGACATGGTTCC 57.684 52.632 0.00 0.00 44.20 3.62
3356 7910 1.214367 TTTCTCGAGCGTTGTCCAAC 58.786 50.000 7.81 0.00 37.92 3.77
3357 7911 2.163818 ATTTCTCGAGCGTTGTCCAA 57.836 45.000 7.81 0.00 0.00 3.53
3358 7912 1.798223 CAATTTCTCGAGCGTTGTCCA 59.202 47.619 7.81 0.00 0.00 4.02
3359 7913 1.128692 CCAATTTCTCGAGCGTTGTCC 59.871 52.381 7.81 0.00 0.00 4.02
3360 7914 1.798813 ACCAATTTCTCGAGCGTTGTC 59.201 47.619 7.81 0.00 0.00 3.18
3361 7915 1.878953 ACCAATTTCTCGAGCGTTGT 58.121 45.000 7.81 0.00 0.00 3.32
3362 7916 2.223144 TGAACCAATTTCTCGAGCGTTG 59.777 45.455 7.81 11.72 34.97 4.10
3363 7917 2.489971 TGAACCAATTTCTCGAGCGTT 58.510 42.857 7.81 2.80 34.97 4.84
3364 7918 2.163818 TGAACCAATTTCTCGAGCGT 57.836 45.000 7.81 0.00 34.97 5.07
3365 7919 3.747099 AATGAACCAATTTCTCGAGCG 57.253 42.857 7.81 0.00 34.97 5.03
3366 7920 5.046910 TGAAATGAACCAATTTCTCGAGC 57.953 39.130 7.81 0.00 43.81 5.03
3367 7921 7.430502 GCTAATGAAATGAACCAATTTCTCGAG 59.569 37.037 5.93 5.93 43.81 4.04
3368 7922 7.094420 TGCTAATGAAATGAACCAATTTCTCGA 60.094 33.333 10.14 0.00 43.81 4.04
3369 7923 7.028962 TGCTAATGAAATGAACCAATTTCTCG 58.971 34.615 10.14 0.00 43.81 4.04
3370 7924 8.937634 ATGCTAATGAAATGAACCAATTTCTC 57.062 30.769 10.14 0.00 43.81 2.87
3373 7927 9.550406 CCATATGCTAATGAAATGAACCAATTT 57.450 29.630 0.00 0.00 32.43 1.82
3374 7928 8.152246 CCCATATGCTAATGAAATGAACCAATT 58.848 33.333 0.00 0.00 0.00 2.32
3375 7929 7.256404 CCCCATATGCTAATGAAATGAACCAAT 60.256 37.037 0.00 0.00 0.00 3.16
3376 7930 6.041865 CCCCATATGCTAATGAAATGAACCAA 59.958 38.462 0.00 0.00 0.00 3.67
3377 7931 5.539574 CCCCATATGCTAATGAAATGAACCA 59.460 40.000 0.00 0.00 0.00 3.67
3378 7932 6.029346 CCCCATATGCTAATGAAATGAACC 57.971 41.667 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.