Multiple sequence alignment - TraesCS6A01G367900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G367900 chr6A 100.000 3065 0 0 1 3065 594531298 594528234 0.000000e+00 5661.0
1 TraesCS6A01G367900 chr6A 81.640 1073 186 9 984 2052 594520666 594519601 0.000000e+00 880.0
2 TraesCS6A01G367900 chr6A 81.519 698 116 9 1366 2055 594516001 594515309 2.060000e-156 562.0
3 TraesCS6A01G367900 chr6A 80.071 567 69 17 2370 2910 594514770 594514222 6.200000e-102 381.0
4 TraesCS6A01G367900 chr6A 73.558 416 98 9 1546 1955 6895625 6896034 6.850000e-32 148.0
5 TraesCS6A01G367900 chr6D 96.264 1392 31 9 724 2107 448365104 448366482 0.000000e+00 2263.0
6 TraesCS6A01G367900 chr6D 94.715 965 33 8 2106 3065 448366553 448367504 0.000000e+00 1483.0
7 TraesCS6A01G367900 chr6D 79.529 1104 191 18 978 2052 448160245 448159148 0.000000e+00 754.0
8 TraesCS6A01G367900 chr6D 78.220 1157 204 27 946 2080 448485482 448486612 0.000000e+00 697.0
9 TraesCS6A01G367900 chr6D 78.059 1144 206 26 958 2080 448059478 448058359 0.000000e+00 680.0
10 TraesCS6A01G367900 chr6D 76.888 1112 215 30 970 2051 448086658 448085559 2.630000e-165 592.0
11 TraesCS6A01G367900 chr6D 83.838 396 61 2 1660 2052 448032582 448032187 1.040000e-99 374.0
12 TraesCS6A01G367900 chr6D 74.171 573 122 18 1061 1617 448034334 448033772 6.660000e-52 215.0
13 TraesCS6A01G367900 chr6D 77.258 299 34 17 1 269 448357288 448357582 8.860000e-31 145.0
14 TraesCS6A01G367900 chr6D 88.000 125 11 3 600 723 464608230 464608109 8.860000e-31 145.0
15 TraesCS6A01G367900 chr6D 90.566 106 6 2 359 460 448364863 448364968 1.480000e-28 137.0
16 TraesCS6A01G367900 chr6D 94.186 86 5 0 455 540 448364993 448365078 6.900000e-27 132.0
17 TraesCS6A01G367900 chr6B 77.355 1104 220 22 958 2046 678746030 678744942 7.210000e-176 627.0
18 TraesCS6A01G367900 chr6B 81.368 687 119 5 1375 2052 679256079 679256765 4.470000e-153 551.0
19 TraesCS6A01G367900 chr6B 80.136 735 120 16 1036 1747 678741343 678740612 2.710000e-145 525.0
20 TraesCS6A01G367900 chr6B 78.736 696 129 11 1397 2079 678818953 678818264 6.030000e-122 448.0
21 TraesCS6A01G367900 chr6B 76.418 335 64 8 958 1283 678931519 678931191 1.890000e-37 167.0
22 TraesCS6A01G367900 chr2A 91.538 130 7 3 600 725 716168714 716168843 3.140000e-40 176.0
23 TraesCS6A01G367900 chr2A 96.000 50 2 0 594 643 532582 532533 7.040000e-12 82.4
24 TraesCS6A01G367900 chr5D 94.565 92 3 2 644 735 343797572 343797661 1.150000e-29 141.0
25 TraesCS6A01G367900 chr7B 91.262 103 7 1 603 705 462942814 462942914 4.120000e-29 139.0
26 TraesCS6A01G367900 chr7B 88.496 113 11 2 603 713 462942968 462942856 5.330000e-28 135.0
27 TraesCS6A01G367900 chr1D 91.089 101 7 2 627 725 10263497 10263597 5.330000e-28 135.0
28 TraesCS6A01G367900 chr3D 85.484 124 16 2 603 725 2146219 2146341 8.920000e-26 128.0
29 TraesCS6A01G367900 chr5A 84.921 126 15 1 603 724 601174972 601174847 1.150000e-24 124.0
30 TraesCS6A01G367900 chr5B 83.582 134 16 2 590 717 229370130 229370263 1.490000e-23 121.0
31 TraesCS6A01G367900 chr4A 84.722 72 8 3 572 643 470568123 470568191 5.480000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G367900 chr6A 594528234 594531298 3064 True 5661.000000 5661 100.000000 1 3065 1 chr6A.!!$R1 3064
1 TraesCS6A01G367900 chr6A 594514222 594520666 6444 True 607.666667 880 81.076667 984 2910 3 chr6A.!!$R2 1926
2 TraesCS6A01G367900 chr6D 448364863 448367504 2641 False 1003.750000 2263 93.932750 359 3065 4 chr6D.!!$F3 2706
3 TraesCS6A01G367900 chr6D 448159148 448160245 1097 True 754.000000 754 79.529000 978 2052 1 chr6D.!!$R3 1074
4 TraesCS6A01G367900 chr6D 448485482 448486612 1130 False 697.000000 697 78.220000 946 2080 1 chr6D.!!$F2 1134
5 TraesCS6A01G367900 chr6D 448058359 448059478 1119 True 680.000000 680 78.059000 958 2080 1 chr6D.!!$R1 1122
6 TraesCS6A01G367900 chr6D 448085559 448086658 1099 True 592.000000 592 76.888000 970 2051 1 chr6D.!!$R2 1081
7 TraesCS6A01G367900 chr6D 448032187 448034334 2147 True 294.500000 374 79.004500 1061 2052 2 chr6D.!!$R5 991
8 TraesCS6A01G367900 chr6B 678740612 678746030 5418 True 576.000000 627 78.745500 958 2046 2 chr6B.!!$R3 1088
9 TraesCS6A01G367900 chr6B 679256079 679256765 686 False 551.000000 551 81.368000 1375 2052 1 chr6B.!!$F1 677
10 TraesCS6A01G367900 chr6B 678818264 678818953 689 True 448.000000 448 78.736000 1397 2079 1 chr6B.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.033504 TGTCGCAAACCTCCTCTCAC 59.966 55.0 0.0 0.0 0.00 3.51 F
104 105 0.035343 GTTGGTGACCCCTCCTTAGC 60.035 60.0 0.0 0.0 0.00 3.09 F
235 236 0.036010 ATGCCAAGAAGGGTCTCACG 60.036 55.0 0.0 0.0 38.09 4.35 F
277 278 0.038343 GGCGTACGTGGGTCACTTAA 60.038 55.0 17.9 0.0 31.34 1.85 F
410 411 0.179097 CCGCCTAGCAGAAGAAGGTC 60.179 60.0 0.0 0.0 32.67 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 2938 0.388649 ATGTCTTCCACGCAGACGAC 60.389 55.000 5.31 5.31 43.26 4.34 R
1689 2943 1.354337 CGTCCATGTCTTCCACGCAG 61.354 60.000 0.00 0.00 0.00 5.18 R
1690 2944 1.374125 CGTCCATGTCTTCCACGCA 60.374 57.895 0.00 0.00 0.00 5.24 R
1778 3032 1.495878 CAGATGCTGGCATACGACTC 58.504 55.000 8.11 0.00 36.70 3.36 R
2216 7853 4.416516 AGCTACCATTGCCTAAAAACCTT 58.583 39.130 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.711698 CTTCCTCTTCCCCTTATCTCTACT 58.288 45.833 0.00 0.00 0.00 2.57
24 25 5.752864 TCCTCTTCCCCTTATCTCTACTT 57.247 43.478 0.00 0.00 0.00 2.24
25 26 6.106407 TCCTCTTCCCCTTATCTCTACTTT 57.894 41.667 0.00 0.00 0.00 2.66
26 27 6.513033 TCCTCTTCCCCTTATCTCTACTTTT 58.487 40.000 0.00 0.00 0.00 2.27
27 28 6.966461 TCCTCTTCCCCTTATCTCTACTTTTT 59.034 38.462 0.00 0.00 0.00 1.94
28 29 8.127038 TCCTCTTCCCCTTATCTCTACTTTTTA 58.873 37.037 0.00 0.00 0.00 1.52
29 30 8.769359 CCTCTTCCCCTTATCTCTACTTTTTAA 58.231 37.037 0.00 0.00 0.00 1.52
30 31 9.825109 CTCTTCCCCTTATCTCTACTTTTTAAG 57.175 37.037 0.00 0.00 0.00 1.85
31 32 9.335211 TCTTCCCCTTATCTCTACTTTTTAAGT 57.665 33.333 0.00 0.00 45.40 2.24
32 33 9.961264 CTTCCCCTTATCTCTACTTTTTAAGTT 57.039 33.333 0.00 0.00 42.81 2.66
33 34 9.734984 TTCCCCTTATCTCTACTTTTTAAGTTG 57.265 33.333 0.00 0.00 42.81 3.16
34 35 8.887393 TCCCCTTATCTCTACTTTTTAAGTTGT 58.113 33.333 0.00 0.00 42.81 3.32
35 36 9.163899 CCCCTTATCTCTACTTTTTAAGTTGTC 57.836 37.037 0.00 0.00 42.81 3.18
36 37 8.870879 CCCTTATCTCTACTTTTTAAGTTGTCG 58.129 37.037 0.00 0.00 42.81 4.35
37 38 8.381387 CCTTATCTCTACTTTTTAAGTTGTCGC 58.619 37.037 0.00 0.00 42.81 5.19
38 39 8.821147 TTATCTCTACTTTTTAAGTTGTCGCA 57.179 30.769 0.00 0.00 42.81 5.10
39 40 7.724305 ATCTCTACTTTTTAAGTTGTCGCAA 57.276 32.000 0.00 0.00 42.81 4.85
40 41 7.542534 TCTCTACTTTTTAAGTTGTCGCAAA 57.457 32.000 0.00 0.00 42.81 3.68
41 42 7.404203 TCTCTACTTTTTAAGTTGTCGCAAAC 58.596 34.615 0.00 0.00 42.81 2.93
42 43 6.488817 TCTACTTTTTAAGTTGTCGCAAACC 58.511 36.000 0.00 0.00 42.81 3.27
43 44 5.319140 ACTTTTTAAGTTGTCGCAAACCT 57.681 34.783 0.00 0.00 39.04 3.50
44 45 5.337554 ACTTTTTAAGTTGTCGCAAACCTC 58.662 37.500 0.00 0.00 39.04 3.85
45 46 3.974871 TTTAAGTTGTCGCAAACCTCC 57.025 42.857 0.00 0.00 0.00 4.30
46 47 2.922740 TAAGTTGTCGCAAACCTCCT 57.077 45.000 0.00 0.00 0.00 3.69
47 48 1.594331 AAGTTGTCGCAAACCTCCTC 58.406 50.000 0.00 0.00 0.00 3.71
48 49 0.759346 AGTTGTCGCAAACCTCCTCT 59.241 50.000 0.00 0.00 0.00 3.69
49 50 1.149148 GTTGTCGCAAACCTCCTCTC 58.851 55.000 0.00 0.00 0.00 3.20
50 51 0.756294 TTGTCGCAAACCTCCTCTCA 59.244 50.000 0.00 0.00 0.00 3.27
51 52 0.033504 TGTCGCAAACCTCCTCTCAC 59.966 55.000 0.00 0.00 0.00 3.51
52 53 0.670854 GTCGCAAACCTCCTCTCACC 60.671 60.000 0.00 0.00 0.00 4.02
53 54 1.738099 CGCAAACCTCCTCTCACCG 60.738 63.158 0.00 0.00 0.00 4.94
54 55 2.035442 GCAAACCTCCTCTCACCGC 61.035 63.158 0.00 0.00 0.00 5.68
55 56 1.376037 CAAACCTCCTCTCACCGCC 60.376 63.158 0.00 0.00 0.00 6.13
56 57 1.536662 AAACCTCCTCTCACCGCCT 60.537 57.895 0.00 0.00 0.00 5.52
57 58 1.831652 AAACCTCCTCTCACCGCCTG 61.832 60.000 0.00 0.00 0.00 4.85
58 59 4.154347 CCTCCTCTCACCGCCTGC 62.154 72.222 0.00 0.00 0.00 4.85
59 60 3.385384 CTCCTCTCACCGCCTGCA 61.385 66.667 0.00 0.00 0.00 4.41
60 61 3.655810 CTCCTCTCACCGCCTGCAC 62.656 68.421 0.00 0.00 0.00 4.57
61 62 4.767255 CCTCTCACCGCCTGCACC 62.767 72.222 0.00 0.00 0.00 5.01
62 63 3.699894 CTCTCACCGCCTGCACCT 61.700 66.667 0.00 0.00 0.00 4.00
63 64 3.655810 CTCTCACCGCCTGCACCTC 62.656 68.421 0.00 0.00 0.00 3.85
64 65 4.007644 CTCACCGCCTGCACCTCA 62.008 66.667 0.00 0.00 0.00 3.86
65 66 4.314440 TCACCGCCTGCACCTCAC 62.314 66.667 0.00 0.00 0.00 3.51
71 72 3.957586 CCTGCACCTCACCCTGCA 61.958 66.667 0.00 0.00 41.13 4.41
72 73 2.670934 CTGCACCTCACCCTGCAC 60.671 66.667 0.00 0.00 38.49 4.57
73 74 3.480679 CTGCACCTCACCCTGCACA 62.481 63.158 0.00 0.00 38.49 4.57
74 75 2.203337 GCACCTCACCCTGCACAA 60.203 61.111 0.00 0.00 33.31 3.33
75 76 2.263741 GCACCTCACCCTGCACAAG 61.264 63.158 0.00 0.00 33.31 3.16
76 77 2.113986 ACCTCACCCTGCACAAGC 59.886 61.111 0.00 0.00 42.57 4.01
77 78 2.674380 CCTCACCCTGCACAAGCC 60.674 66.667 0.00 0.00 41.13 4.35
78 79 2.113774 CTCACCCTGCACAAGCCA 59.886 61.111 0.00 0.00 41.13 4.75
79 80 1.303888 CTCACCCTGCACAAGCCAT 60.304 57.895 0.00 0.00 41.13 4.40
80 81 1.592400 CTCACCCTGCACAAGCCATG 61.592 60.000 0.00 0.00 41.13 3.66
81 82 2.283388 ACCCTGCACAAGCCATGG 60.283 61.111 7.63 7.63 41.13 3.66
82 83 2.283388 CCCTGCACAAGCCATGGT 60.283 61.111 14.67 0.00 41.13 3.55
83 84 2.642254 CCCTGCACAAGCCATGGTG 61.642 63.158 14.67 7.25 41.13 4.17
84 85 1.604308 CCTGCACAAGCCATGGTGA 60.604 57.895 14.67 0.00 41.13 4.02
85 86 1.592400 CCTGCACAAGCCATGGTGAG 61.592 60.000 14.67 4.49 41.13 3.51
86 87 0.892358 CTGCACAAGCCATGGTGAGT 60.892 55.000 14.67 6.44 41.13 3.41
87 88 0.467844 TGCACAAGCCATGGTGAGTT 60.468 50.000 14.67 0.00 41.13 3.01
88 89 0.038892 GCACAAGCCATGGTGAGTTG 60.039 55.000 14.67 13.93 37.18 3.16
89 90 0.599558 CACAAGCCATGGTGAGTTGG 59.400 55.000 14.67 3.68 37.18 3.77
90 91 0.185901 ACAAGCCATGGTGAGTTGGT 59.814 50.000 14.67 0.00 35.34 3.67
91 92 0.599558 CAAGCCATGGTGAGTTGGTG 59.400 55.000 14.67 0.00 35.34 4.17
92 93 0.478072 AAGCCATGGTGAGTTGGTGA 59.522 50.000 14.67 0.00 35.34 4.02
93 94 0.250901 AGCCATGGTGAGTTGGTGAC 60.251 55.000 14.67 0.00 35.34 3.67
94 95 1.244019 GCCATGGTGAGTTGGTGACC 61.244 60.000 14.67 0.00 35.34 4.02
95 96 0.609131 CCATGGTGAGTTGGTGACCC 60.609 60.000 2.57 0.00 0.00 4.46
96 97 0.609131 CATGGTGAGTTGGTGACCCC 60.609 60.000 0.00 0.00 0.00 4.95
97 98 0.772124 ATGGTGAGTTGGTGACCCCT 60.772 55.000 0.00 0.00 0.00 4.79
98 99 1.375326 GGTGAGTTGGTGACCCCTC 59.625 63.158 10.49 10.49 0.00 4.30
99 100 1.375326 GTGAGTTGGTGACCCCTCC 59.625 63.158 13.73 4.36 0.00 4.30
100 101 1.128188 GTGAGTTGGTGACCCCTCCT 61.128 60.000 13.73 0.00 0.00 3.69
101 102 0.401395 TGAGTTGGTGACCCCTCCTT 60.401 55.000 13.73 0.00 0.00 3.36
102 103 1.132657 TGAGTTGGTGACCCCTCCTTA 60.133 52.381 13.73 0.00 0.00 2.69
103 104 1.555533 GAGTTGGTGACCCCTCCTTAG 59.444 57.143 0.00 0.00 0.00 2.18
104 105 0.035343 GTTGGTGACCCCTCCTTAGC 60.035 60.000 0.00 0.00 0.00 3.09
105 106 1.205460 TTGGTGACCCCTCCTTAGCC 61.205 60.000 0.00 0.00 0.00 3.93
106 107 2.732619 GGTGACCCCTCCTTAGCCG 61.733 68.421 0.00 0.00 0.00 5.52
107 108 3.081409 TGACCCCTCCTTAGCCGC 61.081 66.667 0.00 0.00 0.00 6.53
108 109 3.081409 GACCCCTCCTTAGCCGCA 61.081 66.667 0.00 0.00 0.00 5.69
109 110 3.083997 ACCCCTCCTTAGCCGCAG 61.084 66.667 0.00 0.00 0.00 5.18
110 111 3.083997 CCCCTCCTTAGCCGCAGT 61.084 66.667 0.00 0.00 0.00 4.40
111 112 2.501610 CCCTCCTTAGCCGCAGTC 59.498 66.667 0.00 0.00 0.00 3.51
112 113 2.501610 CCTCCTTAGCCGCAGTCC 59.498 66.667 0.00 0.00 0.00 3.85
113 114 2.501610 CTCCTTAGCCGCAGTCCC 59.498 66.667 0.00 0.00 0.00 4.46
114 115 2.038975 TCCTTAGCCGCAGTCCCT 59.961 61.111 0.00 0.00 0.00 4.20
115 116 2.022240 CTCCTTAGCCGCAGTCCCTC 62.022 65.000 0.00 0.00 0.00 4.30
116 117 2.501610 CTTAGCCGCAGTCCCTCC 59.498 66.667 0.00 0.00 0.00 4.30
117 118 2.284331 TTAGCCGCAGTCCCTCCA 60.284 61.111 0.00 0.00 0.00 3.86
118 119 2.579684 CTTAGCCGCAGTCCCTCCAC 62.580 65.000 0.00 0.00 0.00 4.02
121 122 3.322466 CCGCAGTCCCTCCACCTT 61.322 66.667 0.00 0.00 0.00 3.50
122 123 1.987855 CCGCAGTCCCTCCACCTTA 60.988 63.158 0.00 0.00 0.00 2.69
123 124 1.218316 CGCAGTCCCTCCACCTTAC 59.782 63.158 0.00 0.00 0.00 2.34
124 125 1.541310 CGCAGTCCCTCCACCTTACA 61.541 60.000 0.00 0.00 0.00 2.41
125 126 0.690762 GCAGTCCCTCCACCTTACAA 59.309 55.000 0.00 0.00 0.00 2.41
126 127 1.339151 GCAGTCCCTCCACCTTACAAG 60.339 57.143 0.00 0.00 0.00 3.16
138 139 2.344025 CCTTACAAGGTCGTACAAGCC 58.656 52.381 0.00 0.00 41.41 4.35
139 140 2.028385 CCTTACAAGGTCGTACAAGCCT 60.028 50.000 0.00 0.00 41.41 4.58
140 141 3.251571 CTTACAAGGTCGTACAAGCCTC 58.748 50.000 0.00 0.00 0.00 4.70
141 142 0.038526 ACAAGGTCGTACAAGCCTCG 60.039 55.000 0.00 0.00 0.00 4.63
142 143 1.080025 AAGGTCGTACAAGCCTCGC 60.080 57.895 0.00 0.00 0.00 5.03
143 144 2.814183 AAGGTCGTACAAGCCTCGCG 62.814 60.000 0.00 0.00 0.00 5.87
144 145 3.542742 GTCGTACAAGCCTCGCGC 61.543 66.667 0.00 0.00 37.98 6.86
163 164 2.520982 CCCCCTCTCCGATGCGTA 60.521 66.667 0.00 0.00 0.00 4.42
164 165 2.565645 CCCCCTCTCCGATGCGTAG 61.566 68.421 0.00 0.00 0.00 3.51
165 166 1.528542 CCCCTCTCCGATGCGTAGA 60.529 63.158 0.00 0.00 0.00 2.59
166 167 0.896019 CCCCTCTCCGATGCGTAGAT 60.896 60.000 0.00 0.00 0.00 1.98
167 168 0.962489 CCCTCTCCGATGCGTAGATT 59.038 55.000 0.00 0.00 0.00 2.40
168 169 1.336332 CCCTCTCCGATGCGTAGATTG 60.336 57.143 0.00 0.00 0.00 2.67
169 170 1.338337 CCTCTCCGATGCGTAGATTGT 59.662 52.381 0.00 0.00 0.00 2.71
170 171 2.389059 CTCTCCGATGCGTAGATTGTG 58.611 52.381 0.00 0.00 0.00 3.33
171 172 1.749063 TCTCCGATGCGTAGATTGTGT 59.251 47.619 0.00 0.00 0.00 3.72
172 173 2.165641 TCTCCGATGCGTAGATTGTGTT 59.834 45.455 0.00 0.00 0.00 3.32
173 174 2.535984 CTCCGATGCGTAGATTGTGTTC 59.464 50.000 0.00 0.00 0.00 3.18
174 175 2.094442 TCCGATGCGTAGATTGTGTTCA 60.094 45.455 0.00 0.00 0.00 3.18
175 176 2.866156 CCGATGCGTAGATTGTGTTCAT 59.134 45.455 0.00 0.00 0.00 2.57
176 177 3.302675 CCGATGCGTAGATTGTGTTCATG 60.303 47.826 0.00 0.00 0.00 3.07
177 178 3.611517 GATGCGTAGATTGTGTTCATGC 58.388 45.455 0.00 0.00 0.00 4.06
178 179 2.698803 TGCGTAGATTGTGTTCATGCT 58.301 42.857 0.00 0.00 0.00 3.79
179 180 2.416202 TGCGTAGATTGTGTTCATGCTG 59.584 45.455 0.00 0.00 0.00 4.41
180 181 2.789092 GCGTAGATTGTGTTCATGCTGC 60.789 50.000 0.00 0.00 0.00 5.25
181 182 2.223112 CGTAGATTGTGTTCATGCTGCC 60.223 50.000 0.00 0.00 0.00 4.85
182 183 0.806868 AGATTGTGTTCATGCTGCCG 59.193 50.000 0.00 0.00 0.00 5.69
183 184 0.799534 GATTGTGTTCATGCTGCCGC 60.800 55.000 0.00 0.00 0.00 6.53
184 185 2.216750 ATTGTGTTCATGCTGCCGCC 62.217 55.000 0.00 0.00 34.43 6.13
185 186 4.465512 GTGTTCATGCTGCCGCCG 62.466 66.667 0.00 0.00 34.43 6.46
187 188 4.166011 GTTCATGCTGCCGCCGTC 62.166 66.667 0.00 0.00 34.43 4.79
199 200 4.821589 GCCGTCGCCAAGGGAGAG 62.822 72.222 0.00 0.00 34.67 3.20
200 201 4.148825 CCGTCGCCAAGGGAGAGG 62.149 72.222 2.32 2.32 37.20 3.69
201 202 3.068691 CGTCGCCAAGGGAGAGGA 61.069 66.667 3.09 0.00 39.15 3.71
202 203 2.646175 CGTCGCCAAGGGAGAGGAA 61.646 63.158 3.09 0.00 39.15 3.36
203 204 1.219393 GTCGCCAAGGGAGAGGAAG 59.781 63.158 0.00 0.00 30.97 3.46
204 205 2.124942 CGCCAAGGGAGAGGAAGC 60.125 66.667 0.00 0.00 0.00 3.86
205 206 2.959484 CGCCAAGGGAGAGGAAGCA 61.959 63.158 0.00 0.00 0.00 3.91
206 207 1.377856 GCCAAGGGAGAGGAAGCAC 60.378 63.158 0.00 0.00 0.00 4.40
207 208 1.078848 CCAAGGGAGAGGAAGCACG 60.079 63.158 0.00 0.00 0.00 5.34
208 209 1.743252 CAAGGGAGAGGAAGCACGC 60.743 63.158 0.00 0.00 0.00 5.34
209 210 3.302347 AAGGGAGAGGAAGCACGCG 62.302 63.158 3.53 3.53 0.00 6.01
225 226 3.736100 CGCCGCACATGCCAAGAA 61.736 61.111 0.00 0.00 37.91 2.52
226 227 2.180017 GCCGCACATGCCAAGAAG 59.820 61.111 0.00 0.00 37.91 2.85
227 228 2.879907 CCGCACATGCCAAGAAGG 59.120 61.111 0.00 0.00 41.84 3.46
228 229 2.703798 CCGCACATGCCAAGAAGGG 61.704 63.158 0.00 0.00 38.09 3.95
229 230 1.973281 CGCACATGCCAAGAAGGGT 60.973 57.895 0.00 0.00 38.09 4.34
230 231 1.885871 GCACATGCCAAGAAGGGTC 59.114 57.895 0.00 0.00 38.09 4.46
231 232 0.610232 GCACATGCCAAGAAGGGTCT 60.610 55.000 0.00 0.00 38.09 3.85
232 233 1.457346 CACATGCCAAGAAGGGTCTC 58.543 55.000 0.00 0.00 38.09 3.36
233 234 1.067295 ACATGCCAAGAAGGGTCTCA 58.933 50.000 0.00 0.00 38.09 3.27
234 235 1.271597 ACATGCCAAGAAGGGTCTCAC 60.272 52.381 0.00 0.00 38.09 3.51
235 236 0.036010 ATGCCAAGAAGGGTCTCACG 60.036 55.000 0.00 0.00 38.09 4.35
236 237 2.035442 GCCAAGAAGGGTCTCACGC 61.035 63.158 0.00 0.00 38.09 5.34
237 238 1.674057 CCAAGAAGGGTCTCACGCT 59.326 57.895 0.00 0.00 43.70 5.07
238 239 0.390472 CCAAGAAGGGTCTCACGCTC 60.390 60.000 0.00 0.00 40.76 5.03
239 240 0.318441 CAAGAAGGGTCTCACGCTCA 59.682 55.000 0.00 0.00 40.76 4.26
240 241 1.066573 CAAGAAGGGTCTCACGCTCAT 60.067 52.381 0.00 0.00 40.76 2.90
241 242 0.820871 AGAAGGGTCTCACGCTCATC 59.179 55.000 0.00 0.00 40.76 2.92
242 243 0.526524 GAAGGGTCTCACGCTCATCG 60.527 60.000 0.00 0.00 40.76 3.84
243 244 2.564553 AAGGGTCTCACGCTCATCGC 62.565 60.000 0.00 0.00 40.76 4.58
244 245 2.492090 GGTCTCACGCTCATCGCT 59.508 61.111 0.00 0.00 43.23 4.93
245 246 1.587613 GGTCTCACGCTCATCGCTC 60.588 63.158 0.00 0.00 43.23 5.03
246 247 1.587613 GTCTCACGCTCATCGCTCC 60.588 63.158 0.00 0.00 43.23 4.70
247 248 1.750780 TCTCACGCTCATCGCTCCT 60.751 57.895 0.00 0.00 43.23 3.69
248 249 1.299014 CTCACGCTCATCGCTCCTC 60.299 63.158 0.00 0.00 43.23 3.71
249 250 2.279120 CACGCTCATCGCTCCTCC 60.279 66.667 0.00 0.00 43.23 4.30
250 251 2.441164 ACGCTCATCGCTCCTCCT 60.441 61.111 0.00 0.00 43.23 3.69
251 252 2.334653 CGCTCATCGCTCCTCCTC 59.665 66.667 0.00 0.00 36.13 3.71
252 253 2.733945 GCTCATCGCTCCTCCTCC 59.266 66.667 0.00 0.00 35.14 4.30
253 254 2.130426 GCTCATCGCTCCTCCTCCA 61.130 63.158 0.00 0.00 35.14 3.86
254 255 1.680522 GCTCATCGCTCCTCCTCCAA 61.681 60.000 0.00 0.00 35.14 3.53
255 256 0.388659 CTCATCGCTCCTCCTCCAAG 59.611 60.000 0.00 0.00 0.00 3.61
256 257 1.227497 CATCGCTCCTCCTCCAAGC 60.227 63.158 0.00 0.00 0.00 4.01
259 260 4.168291 GCTCCTCCTCCAAGCGGG 62.168 72.222 0.00 0.00 38.37 6.13
260 261 4.168291 CTCCTCCTCCAAGCGGGC 62.168 72.222 0.00 0.00 36.21 6.13
263 264 3.458163 CTCCTCCAAGCGGGCGTA 61.458 66.667 0.00 0.00 36.21 4.42
264 265 3.718210 CTCCTCCAAGCGGGCGTAC 62.718 68.421 0.00 0.00 36.21 3.67
266 267 4.430765 CTCCAAGCGGGCGTACGT 62.431 66.667 17.90 0.00 36.21 3.57
267 268 4.728102 TCCAAGCGGGCGTACGTG 62.728 66.667 17.90 8.45 36.21 4.49
274 275 3.688159 GGGCGTACGTGGGTCACT 61.688 66.667 17.90 0.00 31.34 3.41
275 276 2.341176 GGCGTACGTGGGTCACTT 59.659 61.111 17.90 0.00 31.34 3.16
276 277 1.586028 GGCGTACGTGGGTCACTTA 59.414 57.895 17.90 0.00 31.34 2.24
277 278 0.038343 GGCGTACGTGGGTCACTTAA 60.038 55.000 17.90 0.00 31.34 1.85
278 279 1.404583 GGCGTACGTGGGTCACTTAAT 60.405 52.381 17.90 0.00 31.34 1.40
279 280 2.159254 GGCGTACGTGGGTCACTTAATA 60.159 50.000 17.90 0.00 31.34 0.98
280 281 3.491447 GGCGTACGTGGGTCACTTAATAT 60.491 47.826 17.90 0.00 31.34 1.28
281 282 4.114794 GCGTACGTGGGTCACTTAATATT 58.885 43.478 17.90 0.00 31.34 1.28
282 283 4.567959 GCGTACGTGGGTCACTTAATATTT 59.432 41.667 17.90 0.00 31.34 1.40
283 284 5.063817 GCGTACGTGGGTCACTTAATATTTT 59.936 40.000 17.90 0.00 31.34 1.82
284 285 6.402442 GCGTACGTGGGTCACTTAATATTTTT 60.402 38.462 17.90 0.00 31.34 1.94
309 310 9.662947 TTTTACAATTCCTAGCTAGTTAAGGTC 57.337 33.333 19.31 0.00 37.13 3.85
310 311 8.605325 TTACAATTCCTAGCTAGTTAAGGTCT 57.395 34.615 19.31 0.00 37.13 3.85
311 312 9.705103 TTACAATTCCTAGCTAGTTAAGGTCTA 57.295 33.333 19.31 5.95 37.13 2.59
312 313 8.240267 ACAATTCCTAGCTAGTTAAGGTCTAG 57.760 38.462 19.31 0.33 37.13 2.43
313 314 7.840210 ACAATTCCTAGCTAGTTAAGGTCTAGT 59.160 37.037 19.31 3.01 37.69 2.57
314 315 8.697292 CAATTCCTAGCTAGTTAAGGTCTAGTT 58.303 37.037 19.31 1.18 37.69 2.24
315 316 8.841754 ATTCCTAGCTAGTTAAGGTCTAGTTT 57.158 34.615 19.31 0.00 37.69 2.66
316 317 8.661752 TTCCTAGCTAGTTAAGGTCTAGTTTT 57.338 34.615 19.31 0.00 37.69 2.43
317 318 8.064336 TCCTAGCTAGTTAAGGTCTAGTTTTG 57.936 38.462 19.31 0.00 37.69 2.44
318 319 7.123847 TCCTAGCTAGTTAAGGTCTAGTTTTGG 59.876 40.741 19.31 0.00 37.69 3.28
319 320 6.051179 AGCTAGTTAAGGTCTAGTTTTGGG 57.949 41.667 0.00 0.00 37.69 4.12
320 321 4.634883 GCTAGTTAAGGTCTAGTTTTGGGC 59.365 45.833 0.00 0.00 37.69 5.36
321 322 4.717279 AGTTAAGGTCTAGTTTTGGGCA 57.283 40.909 0.00 0.00 0.00 5.36
322 323 5.056553 AGTTAAGGTCTAGTTTTGGGCAA 57.943 39.130 0.00 0.00 0.00 4.52
323 324 5.641155 AGTTAAGGTCTAGTTTTGGGCAAT 58.359 37.500 0.00 0.00 0.00 3.56
324 325 5.476945 AGTTAAGGTCTAGTTTTGGGCAATG 59.523 40.000 0.00 0.00 0.00 2.82
325 326 3.806949 AGGTCTAGTTTTGGGCAATGA 57.193 42.857 0.00 0.00 0.00 2.57
326 327 4.112634 AGGTCTAGTTTTGGGCAATGAA 57.887 40.909 0.00 0.00 0.00 2.57
327 328 4.082125 AGGTCTAGTTTTGGGCAATGAAG 58.918 43.478 0.00 0.00 0.00 3.02
328 329 3.193479 GGTCTAGTTTTGGGCAATGAAGG 59.807 47.826 0.00 0.00 0.00 3.46
329 330 4.079253 GTCTAGTTTTGGGCAATGAAGGA 58.921 43.478 0.00 0.00 0.00 3.36
330 331 4.156739 GTCTAGTTTTGGGCAATGAAGGAG 59.843 45.833 0.00 0.00 0.00 3.69
331 332 2.250924 AGTTTTGGGCAATGAAGGAGG 58.749 47.619 0.00 0.00 0.00 4.30
332 333 2.158325 AGTTTTGGGCAATGAAGGAGGA 60.158 45.455 0.00 0.00 0.00 3.71
333 334 2.220653 TTTGGGCAATGAAGGAGGAG 57.779 50.000 0.00 0.00 0.00 3.69
334 335 0.332632 TTGGGCAATGAAGGAGGAGG 59.667 55.000 0.00 0.00 0.00 4.30
335 336 1.454663 GGGCAATGAAGGAGGAGGC 60.455 63.158 0.00 0.00 0.00 4.70
336 337 1.821332 GGCAATGAAGGAGGAGGCG 60.821 63.158 0.00 0.00 0.00 5.52
337 338 2.476320 GCAATGAAGGAGGAGGCGC 61.476 63.158 0.00 0.00 0.00 6.53
338 339 1.222936 CAATGAAGGAGGAGGCGCT 59.777 57.895 7.64 0.00 0.00 5.92
339 340 0.393537 CAATGAAGGAGGAGGCGCTT 60.394 55.000 7.64 0.00 0.00 4.68
340 341 0.393537 AATGAAGGAGGAGGCGCTTG 60.394 55.000 7.64 0.00 0.00 4.01
341 342 2.821810 GAAGGAGGAGGCGCTTGC 60.822 66.667 7.64 4.64 38.11 4.01
373 374 2.252260 CACGAGTTGCAAAGCCCG 59.748 61.111 0.00 5.10 0.00 6.13
410 411 0.179097 CCGCCTAGCAGAAGAAGGTC 60.179 60.000 0.00 0.00 32.67 3.85
416 420 4.363999 CCTAGCAGAAGAAGGTCGTTATG 58.636 47.826 0.00 0.00 0.00 1.90
442 447 1.521681 GTGACACCCGCTCCTATGC 60.522 63.158 0.00 0.00 0.00 3.14
477 512 1.891919 GCTTCAGCCAACACCGACA 60.892 57.895 0.00 0.00 34.31 4.35
489 524 2.499205 CCGACAATGCCGGCTCTA 59.501 61.111 29.70 7.94 40.54 2.43
498 533 1.883084 GCCGGCTCTAATGTGTCCG 60.883 63.158 22.15 0.00 39.79 4.79
499 534 1.813859 CCGGCTCTAATGTGTCCGA 59.186 57.895 0.00 0.00 42.43 4.55
504 539 2.482142 GGCTCTAATGTGTCCGAGAAGG 60.482 54.545 0.00 0.00 42.97 3.46
540 575 9.107177 CCATGGCTAGAACTATGATGATTTATC 57.893 37.037 0.00 0.00 36.29 1.75
541 576 9.107177 CATGGCTAGAACTATGATGATTTATCC 57.893 37.037 0.00 0.00 34.77 2.59
542 577 8.441311 TGGCTAGAACTATGATGATTTATCCT 57.559 34.615 0.00 0.00 34.77 3.24
543 578 8.884323 TGGCTAGAACTATGATGATTTATCCTT 58.116 33.333 0.00 0.00 34.77 3.36
544 579 9.377312 GGCTAGAACTATGATGATTTATCCTTC 57.623 37.037 0.00 0.00 34.77 3.46
545 580 9.935241 GCTAGAACTATGATGATTTATCCTTCA 57.065 33.333 0.00 0.00 34.77 3.02
629 664 9.418839 ACTTCCTCCGTAAACTAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
630 665 9.680315 CTTCCTCCGTAAACTAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
631 666 8.757982 TCCTCCGTAAACTAATATAAGAGTGT 57.242 34.615 0.00 0.00 0.00 3.55
632 667 9.193806 TCCTCCGTAAACTAATATAAGAGTGTT 57.806 33.333 0.00 0.00 0.00 3.32
633 668 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
647 682 5.821516 AGAGTGTTTAGATCACTACTCCG 57.178 43.478 0.00 0.00 44.68 4.63
648 683 5.254901 AGAGTGTTTAGATCACTACTCCGT 58.745 41.667 0.00 0.00 44.68 4.69
649 684 6.413052 AGAGTGTTTAGATCACTACTCCGTA 58.587 40.000 0.00 0.00 44.68 4.02
650 685 6.883217 AGAGTGTTTAGATCACTACTCCGTAA 59.117 38.462 0.00 0.00 44.68 3.18
651 686 7.392673 AGAGTGTTTAGATCACTACTCCGTAAA 59.607 37.037 0.00 0.00 44.68 2.01
652 687 7.311408 AGTGTTTAGATCACTACTCCGTAAAC 58.689 38.462 0.00 0.00 43.17 2.01
653 688 7.176340 AGTGTTTAGATCACTACTCCGTAAACT 59.824 37.037 0.00 0.00 43.17 2.66
654 689 8.454106 GTGTTTAGATCACTACTCCGTAAACTA 58.546 37.037 0.00 0.00 33.59 2.24
655 690 9.013229 TGTTTAGATCACTACTCCGTAAACTAA 57.987 33.333 0.00 0.00 0.00 2.24
716 751 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
717 752 8.757982 ACACTCTTATATTAGTTTACGGAGGA 57.242 34.615 0.00 0.00 0.00 3.71
718 753 9.193806 ACACTCTTATATTAGTTTACGGAGGAA 57.806 33.333 0.00 0.00 0.00 3.36
719 754 9.680315 CACTCTTATATTAGTTTACGGAGGAAG 57.320 37.037 0.00 0.00 0.00 3.46
720 755 9.418839 ACTCTTATATTAGTTTACGGAGGAAGT 57.581 33.333 0.00 0.00 0.00 3.01
759 794 7.918536 AAATGCAATGGTGTATTTGCATTTA 57.081 28.000 31.30 7.17 46.63 1.40
805 840 6.313164 CGTTTGAGATTTACCCTTAGAAGACC 59.687 42.308 0.00 0.00 0.00 3.85
815 850 2.428890 CCTTAGAAGACCTGCAGACGAT 59.571 50.000 17.39 3.79 0.00 3.73
849 884 2.492090 CGGCGAGTCTTCCAGAGG 59.508 66.667 0.00 0.00 0.00 3.69
885 924 3.823330 CCTTCCTCCGTCCGTCCG 61.823 72.222 0.00 0.00 0.00 4.79
912 951 1.001378 CCCTTTCACACCGCAAGAAAG 60.001 52.381 0.00 0.00 44.75 2.62
913 952 1.946768 CCTTTCACACCGCAAGAAAGA 59.053 47.619 13.86 0.00 46.88 2.52
914 953 2.357637 CCTTTCACACCGCAAGAAAGAA 59.642 45.455 13.86 0.00 46.88 2.52
915 954 3.181491 CCTTTCACACCGCAAGAAAGAAA 60.181 43.478 13.86 0.00 46.88 2.52
933 972 2.891191 AAACCCTCGCCCAAATCTAA 57.109 45.000 0.00 0.00 0.00 2.10
1110 1161 1.746615 CTCCCGCACCAAGGACATG 60.747 63.158 0.00 0.00 0.00 3.21
1353 1424 3.262686 GACGAATTCGCTCCCCGC 61.263 66.667 27.03 5.02 44.43 6.13
1675 2929 2.960359 GAAGGAGGGTAATGCCGCCC 62.960 65.000 0.00 0.00 45.16 6.13
1778 3032 1.669211 GGAGACGTTCAAGGAAGACGG 60.669 57.143 0.00 0.00 0.00 4.79
2162 7797 6.750501 CCTGTTTTATCAGTTCATTGCATCTG 59.249 38.462 0.00 0.00 34.02 2.90
2199 7836 0.443869 CAGGAAGTGCGTTGGAATCG 59.556 55.000 0.00 0.00 0.00 3.34
2216 7853 5.163248 TGGAATCGGAGGTGATAAAATGCTA 60.163 40.000 0.00 0.00 0.00 3.49
2478 8347 5.337169 GCCCTGTTATTTACTCCATTTTGCA 60.337 40.000 0.00 0.00 0.00 4.08
2528 8399 3.139077 GACACCCACACTAGTTGGAAAG 58.861 50.000 19.62 13.13 34.70 2.62
2604 8476 2.558359 GAGGTTTTGGTGATGTGGGAAG 59.442 50.000 0.00 0.00 0.00 3.46
2605 8477 2.091333 AGGTTTTGGTGATGTGGGAAGT 60.091 45.455 0.00 0.00 0.00 3.01
2606 8478 2.035832 GGTTTTGGTGATGTGGGAAGTG 59.964 50.000 0.00 0.00 0.00 3.16
2607 8479 1.993956 TTTGGTGATGTGGGAAGTGG 58.006 50.000 0.00 0.00 0.00 4.00
2608 8480 0.112218 TTGGTGATGTGGGAAGTGGG 59.888 55.000 0.00 0.00 0.00 4.61
2609 8481 0.770166 TGGTGATGTGGGAAGTGGGA 60.770 55.000 0.00 0.00 0.00 4.37
2610 8482 0.404040 GGTGATGTGGGAAGTGGGAA 59.596 55.000 0.00 0.00 0.00 3.97
2617 8489 2.160853 GGGAAGTGGGAACAGGGGT 61.161 63.158 0.00 0.00 44.46 4.95
2735 8627 3.237268 TCATGTTGGTTAAGGCCAGTT 57.763 42.857 5.01 0.00 40.01 3.16
2819 8713 9.493206 CATCCAACATTTTCTTTTCTTGTTTTG 57.507 29.630 0.00 0.00 0.00 2.44
2860 8754 7.011389 TGCCTGTGAAATTATAAGTCGATCTTG 59.989 37.037 9.58 0.00 37.56 3.02
2882 8833 0.604578 GGAGCAGCAAAGCCATTTCA 59.395 50.000 0.00 0.00 34.23 2.69
2961 8912 5.529430 TGTGTTTTGTGTTGGTGATAGGTAG 59.471 40.000 0.00 0.00 0.00 3.18
2962 8913 4.517453 TGTTTTGTGTTGGTGATAGGTAGC 59.483 41.667 0.00 0.00 0.00 3.58
2963 8914 2.665649 TGTGTTGGTGATAGGTAGCG 57.334 50.000 0.00 0.00 0.00 4.26
2974 8925 4.326548 GTGATAGGTAGCGTCAACAGAAAC 59.673 45.833 4.92 0.00 0.00 2.78
3042 9087 4.397420 TCTAATTGATGTGGTGTTGCTGT 58.603 39.130 0.00 0.00 0.00 4.40
3056 9101 5.222631 GTGTTGCTGTTTTCCCAATAGAAG 58.777 41.667 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.752864 AGTAGAGATAAGGGGAAGAGGAA 57.247 43.478 0.00 0.00 0.00 3.36
2 3 5.752864 AAGTAGAGATAAGGGGAAGAGGA 57.247 43.478 0.00 0.00 0.00 3.71
5 6 9.335211 ACTTAAAAAGTAGAGATAAGGGGAAGA 57.665 33.333 0.00 0.00 40.69 2.87
6 7 9.961264 AACTTAAAAAGTAGAGATAAGGGGAAG 57.039 33.333 0.00 0.00 41.91 3.46
7 8 9.734984 CAACTTAAAAAGTAGAGATAAGGGGAA 57.265 33.333 0.00 0.00 41.91 3.97
11 12 8.381387 GCGACAACTTAAAAAGTAGAGATAAGG 58.619 37.037 0.00 0.00 41.91 2.69
12 13 8.922676 TGCGACAACTTAAAAAGTAGAGATAAG 58.077 33.333 0.00 0.00 41.91 1.73
13 14 8.821147 TGCGACAACTTAAAAAGTAGAGATAA 57.179 30.769 0.00 0.00 41.91 1.75
14 15 8.821147 TTGCGACAACTTAAAAAGTAGAGATA 57.179 30.769 0.00 0.00 41.91 1.98
15 16 7.724305 TTGCGACAACTTAAAAAGTAGAGAT 57.276 32.000 0.00 0.00 41.91 2.75
16 17 7.404203 GTTTGCGACAACTTAAAAAGTAGAGA 58.596 34.615 0.00 0.00 41.91 3.10
17 18 6.631636 GGTTTGCGACAACTTAAAAAGTAGAG 59.368 38.462 0.00 0.00 41.91 2.43
18 19 6.316890 AGGTTTGCGACAACTTAAAAAGTAGA 59.683 34.615 0.00 0.00 41.91 2.59
19 20 6.492254 AGGTTTGCGACAACTTAAAAAGTAG 58.508 36.000 0.00 0.00 41.91 2.57
20 21 6.439675 AGGTTTGCGACAACTTAAAAAGTA 57.560 33.333 0.00 0.00 41.91 2.24
21 22 5.319140 AGGTTTGCGACAACTTAAAAAGT 57.681 34.783 0.00 0.00 45.46 2.66
22 23 4.738252 GGAGGTTTGCGACAACTTAAAAAG 59.262 41.667 0.00 0.00 0.00 2.27
23 24 4.399934 AGGAGGTTTGCGACAACTTAAAAA 59.600 37.500 0.00 0.00 0.00 1.94
24 25 3.949113 AGGAGGTTTGCGACAACTTAAAA 59.051 39.130 0.00 0.00 0.00 1.52
25 26 3.547746 AGGAGGTTTGCGACAACTTAAA 58.452 40.909 0.00 0.00 0.00 1.52
26 27 3.135994 GAGGAGGTTTGCGACAACTTAA 58.864 45.455 0.00 0.00 0.00 1.85
27 28 2.367567 AGAGGAGGTTTGCGACAACTTA 59.632 45.455 0.00 0.00 0.00 2.24
28 29 1.141053 AGAGGAGGTTTGCGACAACTT 59.859 47.619 0.00 0.00 0.00 2.66
29 30 0.759346 AGAGGAGGTTTGCGACAACT 59.241 50.000 0.00 0.00 0.00 3.16
30 31 1.149148 GAGAGGAGGTTTGCGACAAC 58.851 55.000 0.00 0.00 0.00 3.32
31 32 0.756294 TGAGAGGAGGTTTGCGACAA 59.244 50.000 0.00 0.00 0.00 3.18
32 33 0.033504 GTGAGAGGAGGTTTGCGACA 59.966 55.000 0.00 0.00 0.00 4.35
33 34 0.670854 GGTGAGAGGAGGTTTGCGAC 60.671 60.000 0.00 0.00 0.00 5.19
34 35 1.671742 GGTGAGAGGAGGTTTGCGA 59.328 57.895 0.00 0.00 0.00 5.10
35 36 1.738099 CGGTGAGAGGAGGTTTGCG 60.738 63.158 0.00 0.00 0.00 4.85
36 37 2.035442 GCGGTGAGAGGAGGTTTGC 61.035 63.158 0.00 0.00 0.00 3.68
37 38 1.376037 GGCGGTGAGAGGAGGTTTG 60.376 63.158 0.00 0.00 0.00 2.93
38 39 1.536662 AGGCGGTGAGAGGAGGTTT 60.537 57.895 0.00 0.00 0.00 3.27
39 40 2.120718 AGGCGGTGAGAGGAGGTT 59.879 61.111 0.00 0.00 0.00 3.50
40 41 2.681778 CAGGCGGTGAGAGGAGGT 60.682 66.667 0.00 0.00 0.00 3.85
41 42 4.154347 GCAGGCGGTGAGAGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
42 43 3.385384 TGCAGGCGGTGAGAGGAG 61.385 66.667 0.00 0.00 0.00 3.69
43 44 3.695606 GTGCAGGCGGTGAGAGGA 61.696 66.667 0.00 0.00 0.00 3.71
44 45 4.767255 GGTGCAGGCGGTGAGAGG 62.767 72.222 0.00 0.00 0.00 3.69
45 46 3.655810 GAGGTGCAGGCGGTGAGAG 62.656 68.421 0.00 0.00 0.00 3.20
46 47 3.695606 GAGGTGCAGGCGGTGAGA 61.696 66.667 0.00 0.00 0.00 3.27
47 48 4.007644 TGAGGTGCAGGCGGTGAG 62.008 66.667 0.00 0.00 0.00 3.51
48 49 4.314440 GTGAGGTGCAGGCGGTGA 62.314 66.667 0.00 0.00 0.00 4.02
54 55 3.957586 TGCAGGGTGAGGTGCAGG 61.958 66.667 0.00 0.00 44.70 4.85
57 58 2.203337 TTGTGCAGGGTGAGGTGC 60.203 61.111 0.00 0.00 40.29 5.01
58 59 2.263741 GCTTGTGCAGGGTGAGGTG 61.264 63.158 0.00 0.00 39.41 4.00
59 60 2.113986 GCTTGTGCAGGGTGAGGT 59.886 61.111 0.00 0.00 39.41 3.85
60 61 2.674380 GGCTTGTGCAGGGTGAGG 60.674 66.667 0.00 0.00 41.91 3.86
61 62 1.303888 ATGGCTTGTGCAGGGTGAG 60.304 57.895 0.00 0.00 41.91 3.51
62 63 1.604308 CATGGCTTGTGCAGGGTGA 60.604 57.895 0.00 0.00 41.91 4.02
63 64 2.642254 CCATGGCTTGTGCAGGGTG 61.642 63.158 0.00 0.00 41.91 4.61
64 65 2.283388 CCATGGCTTGTGCAGGGT 60.283 61.111 0.00 0.00 41.91 4.34
65 66 2.283388 ACCATGGCTTGTGCAGGG 60.283 61.111 13.04 0.00 41.91 4.45
66 67 1.592400 CTCACCATGGCTTGTGCAGG 61.592 60.000 13.04 0.00 41.91 4.85
67 68 0.892358 ACTCACCATGGCTTGTGCAG 60.892 55.000 13.04 5.05 41.91 4.41
68 69 0.467844 AACTCACCATGGCTTGTGCA 60.468 50.000 13.04 0.00 41.91 4.57
69 70 0.038892 CAACTCACCATGGCTTGTGC 60.039 55.000 13.04 0.00 38.76 4.57
70 71 0.599558 CCAACTCACCATGGCTTGTG 59.400 55.000 13.04 7.26 0.00 3.33
71 72 0.185901 ACCAACTCACCATGGCTTGT 59.814 50.000 13.04 4.87 40.51 3.16
72 73 0.599558 CACCAACTCACCATGGCTTG 59.400 55.000 13.04 3.42 40.51 4.01
73 74 0.478072 TCACCAACTCACCATGGCTT 59.522 50.000 13.04 0.00 40.51 4.35
74 75 0.250901 GTCACCAACTCACCATGGCT 60.251 55.000 13.04 0.00 40.51 4.75
75 76 1.244019 GGTCACCAACTCACCATGGC 61.244 60.000 13.04 0.00 40.51 4.40
76 77 0.609131 GGGTCACCAACTCACCATGG 60.609 60.000 11.19 11.19 42.60 3.66
77 78 0.609131 GGGGTCACCAACTCACCATG 60.609 60.000 0.00 0.00 39.85 3.66
78 79 0.772124 AGGGGTCACCAACTCACCAT 60.772 55.000 0.00 0.00 43.89 3.55
79 80 1.385347 AGGGGTCACCAACTCACCA 60.385 57.895 0.00 0.00 43.89 4.17
80 81 1.375326 GAGGGGTCACCAACTCACC 59.625 63.158 11.82 0.00 43.89 4.02
81 82 1.128188 AGGAGGGGTCACCAACTCAC 61.128 60.000 17.00 8.45 43.89 3.51
82 83 0.401395 AAGGAGGGGTCACCAACTCA 60.401 55.000 17.00 0.00 43.89 3.41
83 84 1.555533 CTAAGGAGGGGTCACCAACTC 59.444 57.143 8.87 8.87 43.89 3.01
84 85 1.657804 CTAAGGAGGGGTCACCAACT 58.342 55.000 0.00 0.00 43.89 3.16
85 86 0.035343 GCTAAGGAGGGGTCACCAAC 60.035 60.000 0.00 0.00 43.89 3.77
86 87 1.205460 GGCTAAGGAGGGGTCACCAA 61.205 60.000 0.00 0.00 43.89 3.67
87 88 1.615424 GGCTAAGGAGGGGTCACCA 60.615 63.158 0.00 0.00 43.89 4.17
88 89 2.732619 CGGCTAAGGAGGGGTCACC 61.733 68.421 0.00 0.00 40.67 4.02
89 90 2.901042 CGGCTAAGGAGGGGTCAC 59.099 66.667 0.00 0.00 0.00 3.67
90 91 3.081409 GCGGCTAAGGAGGGGTCA 61.081 66.667 0.00 0.00 0.00 4.02
91 92 3.081409 TGCGGCTAAGGAGGGGTC 61.081 66.667 0.00 0.00 0.00 4.46
92 93 3.083997 CTGCGGCTAAGGAGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
93 94 3.083997 ACTGCGGCTAAGGAGGGG 61.084 66.667 0.00 0.00 33.63 4.79
94 95 2.501610 GACTGCGGCTAAGGAGGG 59.498 66.667 0.00 0.00 33.63 4.30
95 96 2.501610 GGACTGCGGCTAAGGAGG 59.498 66.667 0.00 0.00 33.63 4.30
96 97 2.022240 GAGGGACTGCGGCTAAGGAG 62.022 65.000 0.00 0.00 41.55 3.69
97 98 2.038975 AGGGACTGCGGCTAAGGA 59.961 61.111 0.00 0.00 37.18 3.36
98 99 2.501610 GAGGGACTGCGGCTAAGG 59.498 66.667 0.00 0.00 41.55 2.69
99 100 2.501610 GGAGGGACTGCGGCTAAG 59.498 66.667 0.00 0.00 41.55 2.18
106 107 4.581769 CCTTGTAAGGTGGAGGGACTGC 62.582 59.091 2.42 0.00 41.96 4.40
107 108 1.279271 CCTTGTAAGGTGGAGGGACTG 59.721 57.143 2.42 0.00 39.52 3.51
108 109 1.657804 CCTTGTAAGGTGGAGGGACT 58.342 55.000 2.42 0.00 41.45 3.85
119 120 3.251571 GAGGCTTGTACGACCTTGTAAG 58.748 50.000 2.98 0.00 32.67 2.34
120 121 2.352030 CGAGGCTTGTACGACCTTGTAA 60.352 50.000 2.98 0.00 32.67 2.41
121 122 1.200716 CGAGGCTTGTACGACCTTGTA 59.799 52.381 2.98 0.00 32.67 2.41
122 123 0.038526 CGAGGCTTGTACGACCTTGT 60.039 55.000 2.98 0.00 32.67 3.16
123 124 1.352156 GCGAGGCTTGTACGACCTTG 61.352 60.000 3.19 10.24 37.93 3.61
124 125 1.080025 GCGAGGCTTGTACGACCTT 60.080 57.895 3.19 0.00 32.67 3.50
125 126 2.572284 GCGAGGCTTGTACGACCT 59.428 61.111 3.19 1.06 36.19 3.85
126 127 2.879462 CGCGAGGCTTGTACGACC 60.879 66.667 0.00 0.00 0.00 4.79
127 128 3.542742 GCGCGAGGCTTGTACGAC 61.543 66.667 12.10 0.00 39.11 4.34
148 149 4.159266 TCTACGCATCGGAGAGGG 57.841 61.111 0.00 0.00 42.31 4.30
152 153 2.209838 ACACAATCTACGCATCGGAG 57.790 50.000 0.00 0.00 39.48 4.63
153 154 2.094442 TGAACACAATCTACGCATCGGA 60.094 45.455 0.00 0.00 0.00 4.55
154 155 2.267426 TGAACACAATCTACGCATCGG 58.733 47.619 0.00 0.00 0.00 4.18
155 156 3.842439 GCATGAACACAATCTACGCATCG 60.842 47.826 0.00 0.00 0.00 3.84
156 157 3.310774 AGCATGAACACAATCTACGCATC 59.689 43.478 0.00 0.00 0.00 3.91
157 158 3.064408 CAGCATGAACACAATCTACGCAT 59.936 43.478 0.00 0.00 39.69 4.73
158 159 2.416202 CAGCATGAACACAATCTACGCA 59.584 45.455 0.00 0.00 39.69 5.24
159 160 2.789092 GCAGCATGAACACAATCTACGC 60.789 50.000 0.00 0.00 39.69 4.42
160 161 2.223112 GGCAGCATGAACACAATCTACG 60.223 50.000 0.00 0.00 39.69 3.51
161 162 2.223112 CGGCAGCATGAACACAATCTAC 60.223 50.000 0.00 0.00 39.69 2.59
162 163 2.009051 CGGCAGCATGAACACAATCTA 58.991 47.619 0.00 0.00 39.69 1.98
163 164 0.806868 CGGCAGCATGAACACAATCT 59.193 50.000 0.00 0.00 39.69 2.40
164 165 0.799534 GCGGCAGCATGAACACAATC 60.800 55.000 3.18 0.00 44.35 2.67
165 166 1.213537 GCGGCAGCATGAACACAAT 59.786 52.632 3.18 0.00 44.35 2.71
166 167 2.644418 GCGGCAGCATGAACACAA 59.356 55.556 3.18 0.00 44.35 3.33
182 183 4.821589 CTCTCCCTTGGCGACGGC 62.822 72.222 15.43 15.43 38.90 5.68
183 184 4.148825 CCTCTCCCTTGGCGACGG 62.149 72.222 0.00 0.00 0.00 4.79
184 185 2.564553 CTTCCTCTCCCTTGGCGACG 62.565 65.000 0.00 0.00 0.00 5.12
185 186 1.219393 CTTCCTCTCCCTTGGCGAC 59.781 63.158 0.00 0.00 0.00 5.19
186 187 2.660064 GCTTCCTCTCCCTTGGCGA 61.660 63.158 0.00 0.00 0.00 5.54
187 188 2.124942 GCTTCCTCTCCCTTGGCG 60.125 66.667 0.00 0.00 0.00 5.69
188 189 1.377856 GTGCTTCCTCTCCCTTGGC 60.378 63.158 0.00 0.00 0.00 4.52
189 190 1.078848 CGTGCTTCCTCTCCCTTGG 60.079 63.158 0.00 0.00 0.00 3.61
190 191 1.743252 GCGTGCTTCCTCTCCCTTG 60.743 63.158 0.00 0.00 0.00 3.61
191 192 2.665603 GCGTGCTTCCTCTCCCTT 59.334 61.111 0.00 0.00 0.00 3.95
192 193 3.764466 CGCGTGCTTCCTCTCCCT 61.764 66.667 0.00 0.00 0.00 4.20
208 209 3.672255 CTTCTTGGCATGTGCGGCG 62.672 63.158 0.51 0.51 43.26 6.46
209 210 2.180017 CTTCTTGGCATGTGCGGC 59.820 61.111 0.00 0.00 43.26 6.53
210 211 2.703798 CCCTTCTTGGCATGTGCGG 61.704 63.158 0.00 0.45 43.26 5.69
211 212 1.926511 GACCCTTCTTGGCATGTGCG 61.927 60.000 0.00 0.00 43.26 5.34
212 213 0.610232 AGACCCTTCTTGGCATGTGC 60.610 55.000 0.00 0.00 41.14 4.57
213 214 1.271543 TGAGACCCTTCTTGGCATGTG 60.272 52.381 0.00 0.00 29.47 3.21
214 215 1.067295 TGAGACCCTTCTTGGCATGT 58.933 50.000 0.00 0.00 29.47 3.21
215 216 1.457346 GTGAGACCCTTCTTGGCATG 58.543 55.000 0.00 0.00 29.47 4.06
216 217 0.036010 CGTGAGACCCTTCTTGGCAT 60.036 55.000 0.00 0.00 29.47 4.40
217 218 1.371183 CGTGAGACCCTTCTTGGCA 59.629 57.895 0.00 0.00 29.47 4.92
218 219 2.035442 GCGTGAGACCCTTCTTGGC 61.035 63.158 0.00 0.00 29.47 4.52
219 220 0.390472 GAGCGTGAGACCCTTCTTGG 60.390 60.000 0.00 0.00 29.47 3.61
220 221 0.318441 TGAGCGTGAGACCCTTCTTG 59.682 55.000 0.00 0.00 29.47 3.02
221 222 1.205893 GATGAGCGTGAGACCCTTCTT 59.794 52.381 0.00 0.00 29.47 2.52
222 223 0.820871 GATGAGCGTGAGACCCTTCT 59.179 55.000 0.00 0.00 33.37 2.85
223 224 0.526524 CGATGAGCGTGAGACCCTTC 60.527 60.000 0.00 0.00 34.64 3.46
224 225 1.513158 CGATGAGCGTGAGACCCTT 59.487 57.895 0.00 0.00 34.64 3.95
225 226 3.069980 GCGATGAGCGTGAGACCCT 62.070 63.158 0.00 0.00 43.41 4.34
226 227 2.583593 GCGATGAGCGTGAGACCC 60.584 66.667 0.00 0.00 43.41 4.46
236 237 0.388659 CTTGGAGGAGGAGCGATGAG 59.611 60.000 0.00 0.00 0.00 2.90
237 238 1.680522 GCTTGGAGGAGGAGCGATGA 61.681 60.000 0.00 0.00 0.00 2.92
238 239 1.227497 GCTTGGAGGAGGAGCGATG 60.227 63.158 0.00 0.00 0.00 3.84
239 240 3.225235 GCTTGGAGGAGGAGCGAT 58.775 61.111 0.00 0.00 0.00 4.58
242 243 4.168291 CCCGCTTGGAGGAGGAGC 62.168 72.222 0.00 0.00 35.39 4.70
243 244 4.168291 GCCCGCTTGGAGGAGGAG 62.168 72.222 0.00 0.00 35.39 3.69
246 247 3.458163 TACGCCCGCTTGGAGGAG 61.458 66.667 0.00 0.00 38.44 3.69
247 248 3.766691 GTACGCCCGCTTGGAGGA 61.767 66.667 0.00 0.00 38.44 3.71
249 250 4.430765 ACGTACGCCCGCTTGGAG 62.431 66.667 16.72 0.00 40.30 3.86
250 251 4.728102 CACGTACGCCCGCTTGGA 62.728 66.667 16.72 0.00 35.39 3.53
257 258 1.876497 TAAGTGACCCACGTACGCCC 61.876 60.000 16.72 0.59 39.64 6.13
258 259 0.038343 TTAAGTGACCCACGTACGCC 60.038 55.000 16.72 0.23 39.64 5.68
259 260 2.000429 ATTAAGTGACCCACGTACGC 58.000 50.000 16.72 0.00 39.64 4.42
260 261 6.651755 AAAATATTAAGTGACCCACGTACG 57.348 37.500 15.01 15.01 39.64 3.67
283 284 9.662947 GACCTTAACTAGCTAGGAATTGTAAAA 57.337 33.333 24.35 1.45 33.21 1.52
284 285 9.043548 AGACCTTAACTAGCTAGGAATTGTAAA 57.956 33.333 24.35 6.07 33.21 2.01
285 286 8.605325 AGACCTTAACTAGCTAGGAATTGTAA 57.395 34.615 24.35 10.98 33.21 2.41
286 287 9.352191 CTAGACCTTAACTAGCTAGGAATTGTA 57.648 37.037 24.35 9.67 32.46 2.41
287 288 7.840210 ACTAGACCTTAACTAGCTAGGAATTGT 59.160 37.037 24.35 14.92 40.40 2.71
288 289 8.240267 ACTAGACCTTAACTAGCTAGGAATTG 57.760 38.462 24.35 12.02 40.40 2.32
289 290 8.841754 AACTAGACCTTAACTAGCTAGGAATT 57.158 34.615 24.35 12.30 40.40 2.17
290 291 8.841754 AAACTAGACCTTAACTAGCTAGGAAT 57.158 34.615 24.35 12.54 40.40 3.01
291 292 8.529476 CAAAACTAGACCTTAACTAGCTAGGAA 58.471 37.037 24.35 16.07 40.40 3.36
292 293 7.123847 CCAAAACTAGACCTTAACTAGCTAGGA 59.876 40.741 24.35 9.48 40.40 2.94
293 294 7.266400 CCAAAACTAGACCTTAACTAGCTAGG 58.734 42.308 24.35 11.75 40.40 3.02
294 295 7.266400 CCCAAAACTAGACCTTAACTAGCTAG 58.734 42.308 19.44 19.44 40.40 3.42
295 296 6.351626 GCCCAAAACTAGACCTTAACTAGCTA 60.352 42.308 0.00 0.00 40.40 3.32
296 297 5.571047 GCCCAAAACTAGACCTTAACTAGCT 60.571 44.000 0.00 0.00 40.40 3.32
297 298 4.634883 GCCCAAAACTAGACCTTAACTAGC 59.365 45.833 0.00 0.00 40.40 3.42
298 299 5.801380 TGCCCAAAACTAGACCTTAACTAG 58.199 41.667 0.00 0.00 41.87 2.57
299 300 5.829062 TGCCCAAAACTAGACCTTAACTA 57.171 39.130 0.00 0.00 0.00 2.24
300 301 4.717279 TGCCCAAAACTAGACCTTAACT 57.283 40.909 0.00 0.00 0.00 2.24
301 302 5.475564 TCATTGCCCAAAACTAGACCTTAAC 59.524 40.000 0.00 0.00 0.00 2.01
302 303 5.636123 TCATTGCCCAAAACTAGACCTTAA 58.364 37.500 0.00 0.00 0.00 1.85
303 304 5.249780 TCATTGCCCAAAACTAGACCTTA 57.750 39.130 0.00 0.00 0.00 2.69
304 305 4.112634 TCATTGCCCAAAACTAGACCTT 57.887 40.909 0.00 0.00 0.00 3.50
305 306 3.806949 TCATTGCCCAAAACTAGACCT 57.193 42.857 0.00 0.00 0.00 3.85
306 307 3.193479 CCTTCATTGCCCAAAACTAGACC 59.807 47.826 0.00 0.00 0.00 3.85
307 308 4.079253 TCCTTCATTGCCCAAAACTAGAC 58.921 43.478 0.00 0.00 0.00 2.59
308 309 4.335416 CTCCTTCATTGCCCAAAACTAGA 58.665 43.478 0.00 0.00 0.00 2.43
309 310 3.445096 CCTCCTTCATTGCCCAAAACTAG 59.555 47.826 0.00 0.00 0.00 2.57
310 311 3.075283 TCCTCCTTCATTGCCCAAAACTA 59.925 43.478 0.00 0.00 0.00 2.24
311 312 2.158325 TCCTCCTTCATTGCCCAAAACT 60.158 45.455 0.00 0.00 0.00 2.66
312 313 2.232208 CTCCTCCTTCATTGCCCAAAAC 59.768 50.000 0.00 0.00 0.00 2.43
313 314 2.528564 CTCCTCCTTCATTGCCCAAAA 58.471 47.619 0.00 0.00 0.00 2.44
314 315 1.272648 CCTCCTCCTTCATTGCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
315 316 0.332632 CCTCCTCCTTCATTGCCCAA 59.667 55.000 0.00 0.00 0.00 4.12
316 317 2.001803 CCTCCTCCTTCATTGCCCA 58.998 57.895 0.00 0.00 0.00 5.36
317 318 1.454663 GCCTCCTCCTTCATTGCCC 60.455 63.158 0.00 0.00 0.00 5.36
318 319 1.821332 CGCCTCCTCCTTCATTGCC 60.821 63.158 0.00 0.00 0.00 4.52
319 320 2.476320 GCGCCTCCTCCTTCATTGC 61.476 63.158 0.00 0.00 0.00 3.56
320 321 0.393537 AAGCGCCTCCTCCTTCATTG 60.394 55.000 2.29 0.00 0.00 2.82
321 322 0.393537 CAAGCGCCTCCTCCTTCATT 60.394 55.000 2.29 0.00 0.00 2.57
322 323 1.222936 CAAGCGCCTCCTCCTTCAT 59.777 57.895 2.29 0.00 0.00 2.57
323 324 2.665000 CAAGCGCCTCCTCCTTCA 59.335 61.111 2.29 0.00 0.00 3.02
324 325 2.821810 GCAAGCGCCTCCTCCTTC 60.822 66.667 2.29 0.00 0.00 3.46
346 347 4.578898 AACTCGTGGTGCGTGCGA 62.579 61.111 0.00 0.00 42.13 5.10
347 348 4.354212 CAACTCGTGGTGCGTGCG 62.354 66.667 0.00 0.00 42.13 5.34
348 349 4.666532 GCAACTCGTGGTGCGTGC 62.667 66.667 12.23 1.77 42.13 5.34
349 350 2.316361 TTTGCAACTCGTGGTGCGTG 62.316 55.000 21.26 1.01 42.13 5.34
350 351 2.047151 CTTTGCAACTCGTGGTGCGT 62.047 55.000 21.26 0.00 42.13 5.24
351 352 1.369209 CTTTGCAACTCGTGGTGCG 60.369 57.895 21.26 4.86 43.01 5.34
352 353 1.658409 GCTTTGCAACTCGTGGTGC 60.658 57.895 20.13 20.13 0.00 5.01
353 354 1.008538 GGCTTTGCAACTCGTGGTG 60.009 57.895 0.00 0.00 0.00 4.17
354 355 2.193536 GGGCTTTGCAACTCGTGGT 61.194 57.895 0.00 0.00 0.00 4.16
355 356 2.644992 GGGCTTTGCAACTCGTGG 59.355 61.111 0.00 0.00 0.00 4.94
356 357 2.252260 CGGGCTTTGCAACTCGTG 59.748 61.111 0.00 0.00 0.00 4.35
357 358 2.203153 ACGGGCTTTGCAACTCGT 60.203 55.556 9.01 9.01 0.00 4.18
373 374 2.109126 GCCTGATTGAGGGCGTCAC 61.109 63.158 9.78 0.00 43.07 3.67
436 441 2.291741 GCGATTTCCTCTTTGGCATAGG 59.708 50.000 5.10 5.06 35.26 2.57
442 447 1.026718 AGCGGCGATTTCCTCTTTGG 61.027 55.000 12.98 0.00 37.10 3.28
477 512 1.668419 GACACATTAGAGCCGGCATT 58.332 50.000 31.54 18.77 0.00 3.56
489 524 1.276421 CACCTCCTTCTCGGACACATT 59.724 52.381 0.00 0.00 36.69 2.71
498 533 2.093235 CCATGGAAGACACCTCCTTCTC 60.093 54.545 5.56 0.00 39.80 2.87
499 534 1.912043 CCATGGAAGACACCTCCTTCT 59.088 52.381 5.56 0.00 39.80 2.85
504 539 2.111384 TCTAGCCATGGAAGACACCTC 58.889 52.381 18.40 0.00 0.00 3.85
603 638 9.418839 ACTCTTATATTAGTTTACGGAGGAAGT 57.581 33.333 0.00 0.00 0.00 3.01
604 639 9.680315 CACTCTTATATTAGTTTACGGAGGAAG 57.320 37.037 0.00 0.00 0.00 3.46
605 640 9.193806 ACACTCTTATATTAGTTTACGGAGGAA 57.806 33.333 0.00 0.00 0.00 3.36
606 641 8.757982 ACACTCTTATATTAGTTTACGGAGGA 57.242 34.615 0.00 0.00 0.00 3.71
607 642 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
621 656 9.053840 CGGAGTAGTGATCTAAACACTCTTATA 57.946 37.037 0.00 0.00 45.58 0.98
622 657 7.556996 ACGGAGTAGTGATCTAAACACTCTTAT 59.443 37.037 0.00 0.00 45.58 1.73
623 658 6.883217 ACGGAGTAGTGATCTAAACACTCTTA 59.117 38.462 0.00 0.00 45.58 2.10
624 659 5.711036 ACGGAGTAGTGATCTAAACACTCTT 59.289 40.000 0.00 0.00 45.58 2.85
625 660 5.254901 ACGGAGTAGTGATCTAAACACTCT 58.745 41.667 0.00 0.00 45.58 3.24
626 661 5.564048 ACGGAGTAGTGATCTAAACACTC 57.436 43.478 0.00 0.19 45.58 3.51
627 662 7.176340 AGTTTACGGAGTAGTGATCTAAACACT 59.824 37.037 0.00 0.00 46.93 3.55
628 663 7.311408 AGTTTACGGAGTAGTGATCTAAACAC 58.689 38.462 9.66 0.00 46.93 3.32
629 664 7.458409 AGTTTACGGAGTAGTGATCTAAACA 57.542 36.000 9.66 0.00 46.93 2.83
690 725 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
691 726 9.193806 TCCTCCGTAAACTAATATAAGAGTGTT 57.806 33.333 0.00 0.00 0.00 3.32
692 727 8.757982 TCCTCCGTAAACTAATATAAGAGTGT 57.242 34.615 0.00 0.00 0.00 3.55
693 728 9.680315 CTTCCTCCGTAAACTAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
694 729 9.418839 ACTTCCTCCGTAAACTAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
702 737 9.813446 CAAATAGTACTTCCTCCGTAAACTAAT 57.187 33.333 0.00 0.00 0.00 1.73
703 738 8.806146 ACAAATAGTACTTCCTCCGTAAACTAA 58.194 33.333 0.00 0.00 0.00 2.24
704 739 8.353423 ACAAATAGTACTTCCTCCGTAAACTA 57.647 34.615 0.00 0.00 0.00 2.24
705 740 7.237209 ACAAATAGTACTTCCTCCGTAAACT 57.763 36.000 0.00 0.00 0.00 2.66
706 741 9.028185 CATACAAATAGTACTTCCTCCGTAAAC 57.972 37.037 0.00 0.00 35.05 2.01
707 742 7.707893 GCATACAAATAGTACTTCCTCCGTAAA 59.292 37.037 0.00 0.00 35.05 2.01
708 743 7.205297 GCATACAAATAGTACTTCCTCCGTAA 58.795 38.462 0.00 0.00 35.05 3.18
709 744 6.239120 GGCATACAAATAGTACTTCCTCCGTA 60.239 42.308 0.00 0.00 35.05 4.02
710 745 5.452917 GGCATACAAATAGTACTTCCTCCGT 60.453 44.000 0.00 0.00 35.05 4.69
711 746 4.989168 GGCATACAAATAGTACTTCCTCCG 59.011 45.833 0.00 0.00 35.05 4.63
712 747 5.925509 TGGCATACAAATAGTACTTCCTCC 58.074 41.667 0.00 0.00 35.05 4.30
713 748 7.859325 TTTGGCATACAAATAGTACTTCCTC 57.141 36.000 0.00 0.00 43.81 3.71
759 794 3.821033 CGACACCCTCAATTTTCTCCTTT 59.179 43.478 0.00 0.00 0.00 3.11
885 924 1.524008 CGGTGTGAAAGGGGAAAGGC 61.524 60.000 0.00 0.00 0.00 4.35
912 951 1.545841 AGATTTGGGCGAGGGTTTTC 58.454 50.000 0.00 0.00 0.00 2.29
913 952 2.891191 TAGATTTGGGCGAGGGTTTT 57.109 45.000 0.00 0.00 0.00 2.43
914 953 2.891191 TTAGATTTGGGCGAGGGTTT 57.109 45.000 0.00 0.00 0.00 3.27
915 954 2.723273 CTTTAGATTTGGGCGAGGGTT 58.277 47.619 0.00 0.00 0.00 4.11
937 976 3.359523 GAAACGGGGGCGTTGGTC 61.360 66.667 0.00 0.00 31.96 4.02
1074 1119 1.521681 GTAGCCGTGGATGGTGAGC 60.522 63.158 0.00 0.00 0.00 4.26
1221 1272 4.770010 CCATCTTCCTCTAGTATCAGGGAC 59.230 50.000 0.00 0.00 0.00 4.46
1353 1424 1.908483 GGAGTACTCCCAGCCCTTG 59.092 63.158 28.87 0.00 43.94 3.61
1682 2936 2.254350 CTTCCACGCAGACGACGA 59.746 61.111 0.00 0.00 43.93 4.20
1684 2938 0.388649 ATGTCTTCCACGCAGACGAC 60.389 55.000 5.31 5.31 43.26 4.34
1689 2943 1.354337 CGTCCATGTCTTCCACGCAG 61.354 60.000 0.00 0.00 0.00 5.18
1690 2944 1.374125 CGTCCATGTCTTCCACGCA 60.374 57.895 0.00 0.00 0.00 5.24
1778 3032 1.495878 CAGATGCTGGCATACGACTC 58.504 55.000 8.11 0.00 36.70 3.36
2162 7797 5.093849 TCCTGGTTAATAGGCACAGTTAC 57.906 43.478 0.00 0.00 35.23 2.50
2199 7836 6.775594 AAACCTTAGCATTTTATCACCTCC 57.224 37.500 0.00 0.00 0.00 4.30
2216 7853 4.416516 AGCTACCATTGCCTAAAAACCTT 58.583 39.130 0.00 0.00 0.00 3.50
2478 8347 2.325583 TTTTGACGCACAAGGAGAGT 57.674 45.000 0.00 0.00 39.77 3.24
2512 8383 7.703058 ATAAATTCCTTTCCAACTAGTGTGG 57.297 36.000 14.47 14.47 0.00 4.17
2528 8399 6.377146 TGCAGAACTCCTTGGTAATAAATTCC 59.623 38.462 0.00 0.00 0.00 3.01
2581 8453 2.091610 TCCCACATCACCAAAACCTCAA 60.092 45.455 0.00 0.00 0.00 3.02
2582 8454 1.496857 TCCCACATCACCAAAACCTCA 59.503 47.619 0.00 0.00 0.00 3.86
2604 8476 1.133792 CCATGATACCCCTGTTCCCAC 60.134 57.143 0.00 0.00 0.00 4.61
2605 8477 1.221635 CCATGATACCCCTGTTCCCA 58.778 55.000 0.00 0.00 0.00 4.37
2606 8478 1.518367 TCCATGATACCCCTGTTCCC 58.482 55.000 0.00 0.00 0.00 3.97
2607 8479 3.662759 TTTCCATGATACCCCTGTTCC 57.337 47.619 0.00 0.00 0.00 3.62
2608 8480 5.300286 CAGAATTTCCATGATACCCCTGTTC 59.700 44.000 0.00 0.00 0.00 3.18
2609 8481 5.203528 CAGAATTTCCATGATACCCCTGTT 58.796 41.667 0.00 0.00 0.00 3.16
2610 8482 4.230502 ACAGAATTTCCATGATACCCCTGT 59.769 41.667 0.00 0.00 0.00 4.00
2617 8489 9.411189 TCATGATTTGACAGAATTTCCATGATA 57.589 29.630 0.00 0.00 34.72 2.15
2692 8577 6.317140 TGATACCTCTGACAGAATCAAATTGC 59.683 38.462 13.54 0.00 36.69 3.56
2735 8627 4.936411 CCCATGCAAATTTCTTGTAATGCA 59.064 37.500 0.37 0.37 46.43 3.96
2819 8713 0.749454 AGGCAACCTGGATCGCATTC 60.749 55.000 0.00 0.00 29.57 2.67
2847 8741 3.300388 TGCTCCCTCAAGATCGACTTAT 58.700 45.455 0.00 0.00 37.03 1.73
2860 8754 0.969409 AATGGCTTTGCTGCTCCCTC 60.969 55.000 0.00 0.00 0.00 4.30
2961 8912 2.159572 AGTGTTGTGTTTCTGTTGACGC 60.160 45.455 0.00 0.00 0.00 5.19
2962 8913 3.370978 AGAGTGTTGTGTTTCTGTTGACG 59.629 43.478 0.00 0.00 0.00 4.35
2963 8914 4.154195 ACAGAGTGTTGTGTTTCTGTTGAC 59.846 41.667 0.45 0.00 45.80 3.18
2974 8925 6.038161 TGGTAATCAAAGAACAGAGTGTTGTG 59.962 38.462 0.00 0.00 41.28 3.33
3012 9057 9.480053 CAACACCACATCAATTAGAATCTTTTT 57.520 29.630 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.