AutoCloner

Multiple sequence alignment - TraesCS6A01G367600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G367600	chr6A	100.000	3869	0	0	1	3869	594503113	594506981	0.000000e+00	7145.0
1	TraesCS6A01G367600	chr6D	86.990	2767	292	40	1126	3869	448510854	448508133	0.000000e+00	3053.0
2	TraesCS6A01G367600	chr6D	92.825	878	44	9	1597	2474	448047845	448048703	0.000000e+00	1254.0
3	TraesCS6A01G367600	chr6D	88.830	752	69	11	1	747	448040318	448041059	0.000000e+00	909.0
4	TraesCS6A01G367600	chr6D	91.406	512	40	4	2472	2980	448048740	448049250	0.000000e+00	699.0
5	TraesCS6A01G367600	chr6D	92.466	438	26	6	867	1298	448041229	448041665	1.530000e-173	619.0
6	TraesCS6A01G367600	chr6D	96.552	319	8	2	3554	3869	448049244	448049562	3.420000e-145	525.0
7	TraesCS6A01G367600	chr6D	96.364	275	10	0	1328	1602	448041666	448041940	1.640000e-123	453.0
8	TraesCS6A01G367600	chr6B	86.311	1914	213	27	805	2692	678881042	678882932	0.000000e+00	2037.0
9	TraesCS6A01G367600	chr6B	89.718	1381	140	2	968	2346	679385463	679384083	0.000000e+00	1762.0
10	TraesCS6A01G367600	chr6B	83.207	1721	259	18	964	2672	678796026	678797728	0.000000e+00	1550.0
11	TraesCS6A01G367600	chr6B	79.220	1718	298	41	966	2662	678807336	678809015	0.000000e+00	1140.0
12	TraesCS6A01G367600	chr6B	78.816	1723	293	52	967	2662	678876231	678877908	0.000000e+00	1094.0
13	TraesCS6A01G367600	chr6B	89.810	736	51	6	1	717	679387280	679386550	0.000000e+00	922.0
14	TraesCS6A01G367600	chr6B	93.232	591	40	0	3	593	678880167	678880757	0.000000e+00	870.0
15	TraesCS6A01G367600	chr6B	94.775	555	29	0	1	555	678795234	678795788	0.000000e+00	865.0
16	TraesCS6A01G367600	chr6B	88.007	592	55	4	1	592	678811318	678811893	0.000000e+00	686.0
17	TraesCS6A01G367600	chr6B	84.411	603	94	0	1338	1940	679363959	679363357	9.260000e-166	593.0
18	TraesCS6A01G367600	chr6B	92.251	271	17	2	3603	3869	679361188	679360918	7.840000e-102	381.0
19	TraesCS6A01G367600	chr6B	88.841	233	18	3	3327	3552	679361876	679361645	2.940000e-71	279.0
20	TraesCS6A01G367600	chr6B	90.066	151	11	2	805	955	679386429	679386283	3.940000e-45	193.0
21	TraesCS6A01G367600	chr6B	85.135	148	16	4	3189	3331	679363252	679363106	3.110000e-31	147.0
22	TraesCS6A01G367600	chr6B	97.778	45	1	0	3556	3600	679361262	679361218	1.150000e-10	78.7
23	TraesCS6A01G367600	chr6B	92.000	50	0	2	747	792	679386463	679386414	2.490000e-07	67.6
24	TraesCS6A01G367600	chrUn	84.980	2004	250	28	805	2786	79396723	79394749	0.000000e+00	1986.0
25	TraesCS6A01G367600	chrUn	90.896	692	58	3	1	692	79371146	79370460	0.000000e+00	924.0
26	TraesCS6A01G367600	chrUn	90.896	692	58	3	1	692	79397770	79397084	0.000000e+00	924.0
27	TraesCS6A01G367600	chrUn	88.008	492	45	4	805	1295	79370099	79369621	1.560000e-158	569.0
28	TraesCS6A01G367600	chr4D	80.462	476	67	20	96	561	464170930	464170471	1.330000e-89	340.0
29	TraesCS6A01G367600	chr4B	80.896	335	49	12	186	515	579887537	579887213	2.310000e-62	250.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G367600	chr6A	594503113	594506981	3868	False	7145.000000	7145	100.000000	1	3869	1	chr6A.!!$F1	3868
1	TraesCS6A01G367600	chr6D	448508133	448510854	2721	True	3053.000000	3053	86.990000	1126	3869	1	chr6D.!!$R1	2743
2	TraesCS6A01G367600	chr6D	448047845	448049562	1717	False	826.000000	1254	93.594333	1597	3869	3	chr6D.!!$F2	2272
3	TraesCS6A01G367600	chr6D	448040318	448041940	1622	False	660.333333	909	92.553333	1	1602	3	chr6D.!!$F1	1601
4	TraesCS6A01G367600	chr6B	678876231	678882932	6701	False	1333.666667	2037	86.119667	3	2692	3	chr6B.!!$F3	2689
5	TraesCS6A01G367600	chr6B	678795234	678797728	2494	False	1207.500000	1550	88.991000	1	2672	2	chr6B.!!$F1	2671
6	TraesCS6A01G367600	chr6B	678807336	678811893	4557	False	913.000000	1140	83.613500	1	2662	2	chr6B.!!$F2	2661
7	TraesCS6A01G367600	chr6B	679384083	679387280	3197	True	736.150000	1762	90.398500	1	2346	4	chr6B.!!$R2	2345
8	TraesCS6A01G367600	chr6B	679360918	679363959	3041	True	295.740000	593	89.683200	1338	3869	5	chr6B.!!$R1	2531
9	TraesCS6A01G367600	chrUn	79394749	79397770	3021	True	1455.000000	1986	87.938000	1	2786	2	chrUn.!!$R2	2785
10	TraesCS6A01G367600	chrUn	79369621	79371146	1525	True	746.500000	924	89.452000	1	1295	2	chrUn.!!$R1	1294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
593	4546	0.036388	TCCAGTCATTGTTCTCGGCC	60.036	55.0	0.00	0.0	0.00	6.13	F
2273	7506	0.037975	GCTTAACCGTCGGAAGGTCA	60.038	55.0	20.51	0.0	41.95	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2282	7515	0.110486	AACGCCAACCAGTCCATCTT	59.890	50.0	0.00	0.0	0.00	2.40	R
3096	8451	0.803768	CCAAGAGCTCATCGGTCACG	60.804	60.0	17.77	0.0	42.56	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
440	4375	1.871772	CCTTTGCTTGTCTCGGCTG	59.128	57.895	0.00	0.00	0.00	4.85
593	4546	0.036388	TCCAGTCATTGTTCTCGGCC	60.036	55.000	0.00	0.00	0.00	6.13
596	4549	0.108615	AGTCATTGTTCTCGGCCGAG	60.109	55.000	42.89	42.89	43.21	4.63
597	4550	1.084370	GTCATTGTTCTCGGCCGAGG	61.084	60.000	45.31	31.42	42.20	4.63
610	4575	0.892063	GCCGAGGGGTAGATCTGATC	59.108	60.000	9.65	9.65	34.97	2.92
624	4589	2.231745	CTGATCTGTGCGTGTTGCCG	62.232	60.000	0.00	0.00	45.60	5.69
625	4590	2.027073	GATCTGTGCGTGTTGCCGA	61.027	57.895	0.00	0.00	45.60	5.54
630	4595	2.030412	TGCGTGTTGCCGATCTGT	59.970	55.556	0.00	0.00	45.60	3.41
642	4612	0.529833	CGATCTGTGTCTGAGCAGGT	59.470	55.000	8.65	2.79	33.81	4.00
678	4656	3.329542	GATGGGTGCGCAGGGAGAA	62.330	63.158	12.22	0.00	0.00	2.87
685	4663	4.778143	CGCAGGGAGAAACCGGGG	62.778	72.222	6.32	0.00	40.11	5.73
707	4909	2.637947	GGATTTGAGAGGTGGCTTCTC	58.362	52.381	1.93	1.93	41.14	2.87
728	4930	2.607635	CGATCGTGTTTGGGTAGGATTG	59.392	50.000	7.03	0.00	0.00	2.67
732	4934	2.482721	CGTGTTTGGGTAGGATTGTGTC	59.517	50.000	0.00	0.00	0.00	3.67
780	5162	3.432186	GCACAAAGCCGGTGAACT	58.568	55.556	1.90	0.00	38.54	3.01
781	5163	2.624169	GCACAAAGCCGGTGAACTA	58.376	52.632	1.90	0.00	38.54	2.24
782	5164	0.948678	GCACAAAGCCGGTGAACTAA	59.051	50.000	1.90	0.00	38.54	2.24
783	5165	1.539827	GCACAAAGCCGGTGAACTAAT	59.460	47.619	1.90	0.00	38.54	1.73
784	5166	2.030274	GCACAAAGCCGGTGAACTAATT	60.030	45.455	1.90	0.00	38.54	1.40
785	5167	3.564511	CACAAAGCCGGTGAACTAATTG	58.435	45.455	1.90	0.00	38.54	2.32
786	5168	3.004315	CACAAAGCCGGTGAACTAATTGT	59.996	43.478	1.90	0.00	38.54	2.71
787	5169	3.004315	ACAAAGCCGGTGAACTAATTGTG	59.996	43.478	1.90	0.00	0.00	3.33
788	5170	1.821216	AGCCGGTGAACTAATTGTGG	58.179	50.000	1.90	0.00	0.00	4.17
789	5171	1.073284	AGCCGGTGAACTAATTGTGGT	59.927	47.619	1.90	0.00	0.00	4.16
790	5172	1.883926	GCCGGTGAACTAATTGTGGTT	59.116	47.619	1.90	0.00	0.00	3.67
791	5173	2.095415	GCCGGTGAACTAATTGTGGTTC	60.095	50.000	1.90	11.33	43.58	3.62
792	5174	2.486592	CCGGTGAACTAATTGTGGTTCC	59.513	50.000	13.97	8.33	42.87	3.62
793	5175	2.486592	CGGTGAACTAATTGTGGTTCCC	59.513	50.000	13.97	13.16	42.87	3.97
794	5176	3.763057	GGTGAACTAATTGTGGTTCCCT	58.237	45.455	13.97	0.00	42.87	4.20
795	5177	3.506067	GGTGAACTAATTGTGGTTCCCTG	59.494	47.826	13.97	0.00	42.87	4.45
796	5178	3.057526	GTGAACTAATTGTGGTTCCCTGC	60.058	47.826	13.97	0.00	42.87	4.85
797	5179	2.969821	ACTAATTGTGGTTCCCTGCA	57.030	45.000	0.00	0.00	0.00	4.41
798	5180	3.237268	ACTAATTGTGGTTCCCTGCAA	57.763	42.857	0.00	0.00	0.00	4.08
799	5181	3.571590	ACTAATTGTGGTTCCCTGCAAA	58.428	40.909	0.00	0.00	0.00	3.68
800	5182	3.964031	ACTAATTGTGGTTCCCTGCAAAA	59.036	39.130	0.00	0.00	0.00	2.44
801	5183	3.922171	AATTGTGGTTCCCTGCAAAAA	57.078	38.095	0.00	0.00	0.00	1.94
865	5266	4.054455	CGGTGAACAACGCGACGG	62.054	66.667	15.93	3.63	33.50	4.79
932	5333	6.239036	GGAAACCACAATTTATAGCTGGATCC	60.239	42.308	4.20	4.20	0.00	3.36
1004	6223	0.468648	TCTCGATCCTCGTCCAGCTA	59.531	55.000	0.00	0.00	41.35	3.32
1009	6228	1.066303	GATCCTCGTCCAGCTACACAG	59.934	57.143	0.00	0.00	0.00	3.66
1015	6240	0.882474	GTCCAGCTACACAGACGTCT	59.118	55.000	13.58	13.58	0.00	4.18
1016	6241	4.868635	CGTCCAGCTACACAGACGTCTG	62.869	59.091	37.50	37.50	45.25	3.51
1033	6258	1.332065	TCTGCGACGAGATCAAGCTAG	59.668	52.381	0.00	0.00	0.00	3.42
1048	6274	6.744175	TCAAGCTAGAGATCAAAGATGGAT	57.256	37.500	0.00	0.00	0.00	3.41
1400	6632	4.578898	ACGCGTGCAACCTCGACA	62.579	61.111	12.93	0.00	34.18	4.35
1464	6696	1.303888	TCTCCCCGAACGTAGCTGT	60.304	57.895	0.00	0.00	0.00	4.40
1512	6744	0.877071	CATCTGGCCGTATGCAATCC	59.123	55.000	0.00	0.00	43.89	3.01
1704	6936	1.600916	GCCCGCCCAGCCTTTATAG	60.601	63.158	0.00	0.00	0.00	1.31
1759	6991	9.923143	AAGCCTATAAAATTAACTTTTGACACC	57.077	29.630	0.00	0.00	37.61	4.16
1803	7036	0.382873	CATCCCGATGCCATTGTGTG	59.617	55.000	0.00	0.00	31.39	3.82
1804	7037	1.386525	ATCCCGATGCCATTGTGTGC	61.387	55.000	0.00	0.00	0.00	4.57
1834	7067	1.819632	GCATTGGAGCGTCCGGAAT	60.820	57.895	5.23	0.00	40.17	3.01
1853	7086	5.508153	CGGAATTGGTATCCTGACTACTCTG	60.508	48.000	0.00	0.00	34.66	3.35
1876	7109	2.002586	GACATGGACATGGAGACGTTG	58.997	52.381	15.94	0.00	42.91	4.10
1963	7196	2.741092	GTCACCGCTGAAGGGACA	59.259	61.111	0.00	0.00	34.08	4.02
1999	7232	1.059584	TGTCAAGACCAGGCCTCCAA	61.060	55.000	0.00	0.00	0.00	3.53
2014	7247	2.224523	CCTCCAACTAAAGGTCTGCACA	60.225	50.000	0.00	0.00	0.00	4.57
2103	7336	2.298163	TCGAGTTGAAACCACCTAGTCC	59.702	50.000	0.00	0.00	0.00	3.85
2240	7473	2.334977	TGGAGGAGTTTGAGTTGCCTA	58.665	47.619	0.00	0.00	0.00	3.93
2273	7506	0.037975	GCTTAACCGTCGGAAGGTCA	60.038	55.000	20.51	0.00	41.95	4.02
2281	7514	1.459592	CGTCGGAAGGTCATGTTGTTC	59.540	52.381	0.00	0.00	0.00	3.18
2282	7515	2.489971	GTCGGAAGGTCATGTTGTTCA	58.510	47.619	0.00	0.00	0.00	3.18
2351	7584	3.797256	GGTGCATGTATGTAAGTCGAGTC	59.203	47.826	0.00	0.00	0.00	3.36
2414	7653	2.832563	TCTGTCATGTTTCAGCGTTGA	58.167	42.857	0.00	0.00	0.00	3.18
2464	7704	4.483476	AGTCACGCTTGTTATTGGTTTC	57.517	40.909	0.00	0.00	0.00	2.78
2495	7774	8.871686	ACATGAACTCAATTTTTGGTCTTTAC	57.128	30.769	0.00	0.00	0.00	2.01
2528	7813	8.560374	ACTTGTTTTGAGTAGCTTTGATAAGAC	58.440	33.333	0.00	0.00	32.92	3.01
2639	7926	9.918630	AATAACAAATGTTGAGGAAATTCTCAG	57.081	29.630	8.99	0.00	43.64	3.35
2694	7982	3.485463	TGGACTTGACGGTTGATTCTT	57.515	42.857	0.00	0.00	0.00	2.52
2827	8175	6.612247	TTTGCGTGATATAAGTACATTGGG	57.388	37.500	0.00	0.00	0.00	4.12
2835	8183	6.982141	TGATATAAGTACATTGGGTGTTCGAC	59.018	38.462	0.00	0.00	42.29	4.20
2852	8200	4.247267	TCGACGAACCATGTAGTTCTTT	57.753	40.909	11.51	1.18	43.27	2.52
2884	8233	6.263344	GGAAATAAATAAAGCTTCACGTCCC	58.737	40.000	0.00	0.00	0.00	4.46
2903	8252	2.544267	CCCGAACCAATTTCTATCGAGC	59.456	50.000	0.00	0.00	35.65	5.03
2962	8312	3.480133	GGTAGCACCGCCCCTCAT	61.480	66.667	0.00	0.00	0.00	2.90
2966	8316	0.397957	TAGCACCGCCCCTCATAGAA	60.398	55.000	0.00	0.00	0.00	2.10
3001	8351	0.460284	GACTCCAACGCCATCGATGT	60.460	55.000	23.27	2.77	36.86	3.06
3009	8359	0.247814	CGCCATCGATGTTGCTTGTC	60.248	55.000	23.27	3.73	38.10	3.18
3051	8401	3.690139	GGCGAGACAGATATCTAATCGGA	59.310	47.826	23.70	0.00	0.00	4.55
3072	8427	0.318107	CTTTGCCGTCACAGCCTTTG	60.318	55.000	0.00	0.00	0.00	2.77
3083	8438	3.258372	TCACAGCCTTTGTCTAGTACCAG	59.742	47.826	0.00	0.00	38.16	4.00
3090	8445	4.037684	CCTTTGTCTAGTACCAGGGATACG	59.962	50.000	0.00	0.00	37.60	3.06
3143	8498	4.574013	CCTCTGCATAGTTTTCAGGACATC	59.426	45.833	0.00	0.00	0.00	3.06
3150	8505	4.543590	AGTTTTCAGGACATCTGTCGAT	57.456	40.909	4.36	0.00	45.65	3.59
3174	8529	5.250235	TCTAGTTTCTCTAGATGTTGCCG	57.750	43.478	0.00	0.00	46.91	5.69
3198	8553	1.004927	GTGTTTGTAGATGCGCGGATC	60.005	52.381	30.46	30.46	0.00	3.36
3232	8588	4.443913	TGCACAATGGATGTTCAATCAG	57.556	40.909	0.00	0.00	41.46	2.90
3310	8669	8.902806	TCTCAAACAATGTGATTTCTACTTTGT	58.097	29.630	0.00	0.00	43.73	2.83
3333	9926	9.589461	TTGTATCTCCTTAGAAAGATAGGTAGG	57.411	37.037	5.09	0.00	35.66	3.18
3352	9945	3.955471	AGGTGAAATCATGTACCACAGG	58.045	45.455	0.00	0.00	35.66	4.00
3358	9951	6.313905	GTGAAATCATGTACCACAGGAAGTAG	59.686	42.308	0.00	0.00	42.47	2.57
3363	9956	7.305813	TCATGTACCACAGGAAGTAGTAAAA	57.694	36.000	0.00	0.00	35.84	1.52
3423	10017	1.089481	TGGAGCGCCGAATGCTTAAG	61.089	55.000	2.29	0.00	44.18	1.85
3448	10058	5.599999	AGTTCAATATAAGACCACGAGCT	57.400	39.130	0.00	0.00	0.00	4.09
3449	10059	6.710597	AGTTCAATATAAGACCACGAGCTA	57.289	37.500	0.00	0.00	0.00	3.32
3450	10060	6.505272	AGTTCAATATAAGACCACGAGCTAC	58.495	40.000	0.00	0.00	0.00	3.58
3451	10061	5.449107	TCAATATAAGACCACGAGCTACC	57.551	43.478	0.00	0.00	0.00	3.18
3452	10062	4.891168	TCAATATAAGACCACGAGCTACCA	59.109	41.667	0.00	0.00	0.00	3.25
3453	10063	5.538813	TCAATATAAGACCACGAGCTACCAT	59.461	40.000	0.00	0.00	0.00	3.55
3454	10064	6.041637	TCAATATAAGACCACGAGCTACCATT	59.958	38.462	0.00	0.00	0.00	3.16
3455	10065	2.386661	AAGACCACGAGCTACCATTG	57.613	50.000	0.00	0.00	0.00	2.82
3456	10066	0.108138	AGACCACGAGCTACCATTGC	60.108	55.000	0.00	0.00	0.00	3.56
3458	10068	1.078497	CCACGAGCTACCATTGCCA	60.078	57.895	0.00	0.00	0.00	4.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
211	4146	1.298340	CATGTACCAGGCCGTTCCA	59.702	57.895	0.00	0.00	37.29	3.53
327	4262	4.927782	AGCACGCCAACTTCGCCA	62.928	61.111	0.00	0.00	0.00	5.69
475	4411	1.374758	CAGCCTCGACACAAGGGTC	60.375	63.158	0.00	0.00	42.62	4.46
522	4458	0.253044	GCCCACCATAACAGAGCTGA	59.747	55.000	4.21	0.00	0.00	4.26
529	4465	1.001887	GAACCCGCCCACCATAACA	60.002	57.895	0.00	0.00	0.00	2.41
556	4509	0.039074	GATCAGATACCAGGGTCGCG	60.039	60.000	0.00	0.00	0.00	5.87
567	4520	5.221322	CCGAGAACAATGACTGGATCAGATA	60.221	44.000	1.59	0.00	41.91	1.98
593	4546	2.556189	CACAGATCAGATCTACCCCTCG	59.444	54.545	12.88	1.65	37.58	4.63
596	4549	1.000283	CGCACAGATCAGATCTACCCC	60.000	57.143	12.88	1.77	37.58	4.95
597	4550	1.683917	ACGCACAGATCAGATCTACCC	59.316	52.381	12.88	3.42	37.58	3.69
610	4575	2.029288	AGATCGGCAACACGCACAG	61.029	57.895	0.00	0.00	45.17	3.66
624	4589	4.399004	AATACCTGCTCAGACACAGATC	57.601	45.455	0.00	0.00	35.90	2.75
625	4590	4.833478	AAATACCTGCTCAGACACAGAT	57.167	40.909	0.00	0.00	35.90	2.90
630	4595	5.045213	TCCCATAAAAATACCTGCTCAGACA	60.045	40.000	0.00	0.00	0.00	3.41
642	4612	6.658816	CACCCATCATCGATCCCATAAAAATA	59.341	38.462	0.00	0.00	0.00	1.40
685	4663	0.678048	AAGCCACCTCTCAAATCCGC	60.678	55.000	0.00	0.00	0.00	5.54
707	4909	2.596904	ATCCTACCCAAACACGATCG	57.403	50.000	14.88	14.88	0.00	3.69
728	4930	1.594862	GCAGATAGATGTTGGCGACAC	59.405	52.381	10.35	4.61	42.04	3.67
877	5278	3.443045	GCCGGTCCAGCATGTTGG	61.443	66.667	21.77	21.77	39.70	3.77
932	5333	1.722011	AACTAAGTTGCGTCCCGATG	58.278	50.000	0.00	0.00	0.00	3.84
1015	6240	1.332065	CTCTAGCTTGATCTCGTCGCA	59.668	52.381	0.00	0.00	0.00	5.10
1016	6241	1.600013	TCTCTAGCTTGATCTCGTCGC	59.400	52.381	0.00	0.00	0.00	5.19
1017	6242	3.496507	TGATCTCTAGCTTGATCTCGTCG	59.503	47.826	18.37	0.00	39.63	5.12
1022	6247	6.554228	TCCATCTTTGATCTCTAGCTTGATCT	59.446	38.462	18.37	3.42	39.63	2.75
1033	6258	4.305769	CCGTCTCATCCATCTTTGATCTC	58.694	47.826	0.00	0.00	0.00	2.75
1090	6316	1.658717	GATCTCACGGATGGCGTCG	60.659	63.158	0.00	0.00	34.33	5.12
1298	6524	1.452145	AACGTCGCAAACATGGGCTT	61.452	50.000	0.00	0.00	0.00	4.35
1464	6696	5.104527	ACAGACTTGCCATACTTATAGCCAA	60.105	40.000	0.00	0.00	0.00	4.52
1704	6936	0.959553	TGACTCACTGGACGAGAACC	59.040	55.000	0.00	0.00	34.47	3.62
1759	6991	3.147595	TCACGGATCCCTCCAGCG	61.148	66.667	6.06	0.00	42.19	5.18
1803	7036	3.131478	AATGCACCTTACCGCGGC	61.131	61.111	28.58	10.03	0.00	6.53
1804	7037	2.760159	CCAATGCACCTTACCGCGG	61.760	63.158	26.86	26.86	0.00	6.46
1834	7067	5.185249	GTCAACAGAGTAGTCAGGATACCAA	59.815	44.000	0.00	0.00	37.17	3.67
1853	7086	2.002586	CGTCTCCATGTCCATGTCAAC	58.997	52.381	6.53	1.18	37.11	3.18
1876	7109	4.439968	TGATCATTGTCTGAGAGATGTGC	58.560	43.478	0.00	1.82	37.28	4.57
1963	7196	3.970842	TGACAAAAGTAACACCAAGGGT	58.029	40.909	0.00	0.00	35.62	4.34
1979	7212	1.059584	TGGAGGCCTGGTCTTGACAA	61.060	55.000	12.00	0.00	0.00	3.18
1999	7232	0.602905	GCCGTGTGCAGACCTTTAGT	60.603	55.000	8.62	0.00	40.77	2.24
2014	7247	2.704572	CTCTTTCTTCCATCTTGCCGT	58.295	47.619	0.00	0.00	0.00	5.68
2103	7336	5.880054	TTTCTCTGGCCTTCTTTTAATCG	57.120	39.130	3.32	0.00	0.00	3.34
2240	7473	2.297880	GGTTAAGCCCATCAAAACCGTT	59.702	45.455	0.00	0.00	31.09	4.44
2273	7506	4.104383	ACCAGTCCATCTTGAACAACAT	57.896	40.909	0.00	0.00	0.00	2.71
2281	7514	0.606401	ACGCCAACCAGTCCATCTTG	60.606	55.000	0.00	0.00	0.00	3.02
2282	7515	0.110486	AACGCCAACCAGTCCATCTT	59.890	50.000	0.00	0.00	0.00	2.40
2351	7584	1.069227	GGCTGACCTTTTTGTGCGTAG	60.069	52.381	0.00	0.00	0.00	3.51
2414	7653	4.166246	ACAATGATGCTCATGATCCACT	57.834	40.909	0.00	0.00	37.15	4.00
2464	7704	3.302365	AAATTGAGTTCATGTTGGGCG	57.698	42.857	0.00	0.00	0.00	6.13
2495	7774	6.619801	AGCTACTCAAAACAAGTAACAAGG	57.380	37.500	0.00	0.00	0.00	3.61
2558	7843	7.312154	TGATGCTTCCACATGTTTATACAAAC	58.688	34.615	0.00	0.00	43.67	2.93
2827	8175	2.669364	ACTACATGGTTCGTCGAACAC	58.331	47.619	32.59	23.51	43.54	3.32
2835	8183	7.414098	CCCTTTATCAAAGAACTACATGGTTCG	60.414	40.741	8.59	0.00	46.99	3.95
2962	8312	2.028839	TCGGTTGGCGAATTCACTTCTA	60.029	45.455	6.22	0.00	0.00	2.10
2966	8316	0.034896	AGTCGGTTGGCGAATTCACT	59.965	50.000	6.22	0.00	0.00	3.41
2984	8334	0.374758	CAACATCGATGGCGTTGGAG	59.625	55.000	28.09	1.14	40.55	3.86
3001	8351	0.322816	GGATGAGGCAGGACAAGCAA	60.323	55.000	0.00	0.00	0.00	3.91
3009	8359	1.153005	GCTTGGAGGATGAGGCAGG	60.153	63.158	0.00	0.00	0.00	4.85
3051	8401	2.594592	GGCTGTGACGGCAAAGGT	60.595	61.111	19.20	0.00	37.51	3.50
3061	8411	3.236047	TGGTACTAGACAAAGGCTGTGA	58.764	45.455	12.68	0.00	38.84	3.58
3072	8427	5.414144	GGATTACGTATCCCTGGTACTAGAC	59.586	48.000	7.98	0.00	46.20	2.59
3090	8445	1.067212	AGCTCATCGGTCACGGATTAC	59.933	52.381	0.00	0.00	41.39	1.89
3096	8451	0.803768	CCAAGAGCTCATCGGTCACG	60.804	60.000	17.77	0.00	42.56	4.35
3168	8523	1.265635	TCTACAAACACATGCGGCAAC	59.734	47.619	6.82	0.00	0.00	4.17
3174	8529	1.538276	GCGCATCTACAAACACATGC	58.462	50.000	0.30	0.00	38.64	4.06
3257	8616	7.878547	TGACATACTTGCCAATTTATCATCA	57.121	32.000	0.00	0.00	0.00	3.07
3310	8669	8.956860	TCACCTACCTATCTTTCTAAGGAGATA	58.043	37.037	0.00	0.00	34.60	1.98
3333	9926	5.003804	ACTTCCTGTGGTACATGATTTCAC	58.996	41.667	0.00	3.14	44.52	3.18
3423	10017	5.502544	GCTCGTGGTCTTATATTGAACTTGC	60.503	44.000	0.00	0.00	0.00	4.01
3475	10085	2.625314	CGTCAGAATCAGAGGGCATAGA	59.375	50.000	0.00	0.00	0.00	1.98
3476	10086	2.865670	GCGTCAGAATCAGAGGGCATAG	60.866	54.545	0.00	0.00	0.00	2.23
3511	10121	2.079158	CTCCACAATGTACTGTGCCAG	58.921	52.381	9.23	4.56	44.47	4.85
3839	10867	1.074775	GCACCATTGTGAGGGACCA	59.925	57.895	0.14	0.00	45.76	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.