Multiple sequence alignment - TraesCS6A01G365600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G365600 chr6A 100.000 2531 0 0 1 2531 593776421 593773891 0.000000e+00 4674
1 TraesCS6A01G365600 chr7B 99.191 1977 16 0 555 2531 697603949 697601973 0.000000e+00 3563
2 TraesCS6A01G365600 chr4B 99.239 1970 14 1 563 2531 437234399 437236368 0.000000e+00 3554
3 TraesCS6A01G365600 chr7A 99.039 1977 17 2 555 2531 40032037 40034011 0.000000e+00 3544
4 TraesCS6A01G365600 chr7A 99.036 1971 16 2 561 2531 686635017 686636984 0.000000e+00 3531
5 TraesCS6A01G365600 chr4A 99.087 1971 16 1 563 2531 620586045 620588015 0.000000e+00 3539
6 TraesCS6A01G365600 chr4A 99.086 1969 18 0 563 2531 724630114 724632082 0.000000e+00 3537
7 TraesCS6A01G365600 chr3A 99.137 1969 12 3 563 2531 658743970 658742007 0.000000e+00 3537
8 TraesCS6A01G365600 chr5B 99.035 1969 18 1 563 2531 705811763 705813730 0.000000e+00 3530
9 TraesCS6A01G365600 chr1B 98.985 1970 19 1 562 2531 637367015 637365047 0.000000e+00 3526
10 TraesCS6A01G365600 chr6D 89.655 174 13 2 63 236 446901169 446901001 1.520000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G365600 chr6A 593773891 593776421 2530 True 4674 4674 100.000 1 2531 1 chr6A.!!$R1 2530
1 TraesCS6A01G365600 chr7B 697601973 697603949 1976 True 3563 3563 99.191 555 2531 1 chr7B.!!$R1 1976
2 TraesCS6A01G365600 chr4B 437234399 437236368 1969 False 3554 3554 99.239 563 2531 1 chr4B.!!$F1 1968
3 TraesCS6A01G365600 chr7A 40032037 40034011 1974 False 3544 3544 99.039 555 2531 1 chr7A.!!$F1 1976
4 TraesCS6A01G365600 chr7A 686635017 686636984 1967 False 3531 3531 99.036 561 2531 1 chr7A.!!$F2 1970
5 TraesCS6A01G365600 chr4A 620586045 620588015 1970 False 3539 3539 99.087 563 2531 1 chr4A.!!$F1 1968
6 TraesCS6A01G365600 chr4A 724630114 724632082 1968 False 3537 3537 99.086 563 2531 1 chr4A.!!$F2 1968
7 TraesCS6A01G365600 chr3A 658742007 658743970 1963 True 3537 3537 99.137 563 2531 1 chr3A.!!$R1 1968
8 TraesCS6A01G365600 chr5B 705811763 705813730 1967 False 3530 3530 99.035 563 2531 1 chr5B.!!$F1 1968
9 TraesCS6A01G365600 chr1B 637365047 637367015 1968 True 3526 3526 98.985 562 2531 1 chr1B.!!$R1 1969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.028242 CGTTGGTAAGTGTTGCGCAA 59.972 50.0 21.02 21.02 0.00 4.85 F
492 493 0.106769 TGTGTCTTTGCTTCCAGGCA 60.107 50.0 0.00 0.00 40.74 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 1161 1.697432 CCAGATCCACCGCCCTAATTA 59.303 52.381 0.0 0.0 0.0 1.4 R
2461 2464 1.305046 GGGGAGGAGTGAAGGACGA 60.305 63.158 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.202690 TCGGCGCCGAACATGTAG 60.203 61.111 46.56 17.71 46.01 2.74
29 30 3.261951 CGGCGCCGAACATGTAGG 61.262 66.667 44.86 10.04 42.83 3.18
30 31 3.573491 GGCGCCGAACATGTAGGC 61.573 66.667 26.55 26.55 46.88 3.93
33 34 3.395669 GCCGAACATGTAGGCGAC 58.604 61.111 23.79 7.65 41.53 5.19
34 35 2.171725 GCCGAACATGTAGGCGACC 61.172 63.158 23.79 9.05 41.53 4.79
35 36 1.515954 CCGAACATGTAGGCGACCT 59.484 57.895 14.77 3.87 37.71 3.85
36 37 0.806102 CCGAACATGTAGGCGACCTG 60.806 60.000 14.77 1.77 34.61 4.00
37 38 0.108804 CGAACATGTAGGCGACCTGT 60.109 55.000 0.00 3.03 38.42 4.00
38 39 1.671850 CGAACATGTAGGCGACCTGTT 60.672 52.381 18.12 18.12 46.03 3.16
39 40 2.423577 GAACATGTAGGCGACCTGTTT 58.576 47.619 18.83 6.68 44.16 2.83
40 41 1.808411 ACATGTAGGCGACCTGTTTG 58.192 50.000 0.00 5.75 33.56 2.93
41 42 0.447801 CATGTAGGCGACCTGTTTGC 59.552 55.000 8.44 0.00 34.61 3.68
42 43 1.019278 ATGTAGGCGACCTGTTTGCG 61.019 55.000 8.44 0.00 34.61 4.85
43 44 2.047655 TAGGCGACCTGTTTGCGG 60.048 61.111 8.44 0.00 34.61 5.69
47 48 4.072088 CGACCTGTTTGCGGCGTC 62.072 66.667 9.37 0.91 0.00 5.19
48 49 3.723348 GACCTGTTTGCGGCGTCC 61.723 66.667 9.37 0.00 0.00 4.79
64 65 4.715523 CCGCGCCAAGGAAGGGAA 62.716 66.667 0.00 0.00 0.00 3.97
65 66 3.127533 CGCGCCAAGGAAGGGAAG 61.128 66.667 0.00 0.00 0.00 3.46
66 67 3.443925 GCGCCAAGGAAGGGAAGC 61.444 66.667 0.00 0.00 0.00 3.86
67 68 2.034066 CGCCAAGGAAGGGAAGCA 59.966 61.111 0.00 0.00 0.00 3.91
68 69 1.379044 CGCCAAGGAAGGGAAGCAT 60.379 57.895 0.00 0.00 0.00 3.79
69 70 1.379642 CGCCAAGGAAGGGAAGCATC 61.380 60.000 0.00 0.00 0.00 3.91
70 71 1.379642 GCCAAGGAAGGGAAGCATCG 61.380 60.000 0.00 0.00 0.00 3.84
71 72 1.379642 CCAAGGAAGGGAAGCATCGC 61.380 60.000 0.00 0.00 38.73 4.58
72 73 0.677731 CAAGGAAGGGAAGCATCGCA 60.678 55.000 8.78 0.00 40.79 5.10
73 74 0.678048 AAGGAAGGGAAGCATCGCAC 60.678 55.000 8.78 2.25 40.79 5.34
74 75 2.464459 GGAAGGGAAGCATCGCACG 61.464 63.158 8.78 0.00 40.79 5.34
75 76 3.100862 GAAGGGAAGCATCGCACGC 62.101 63.158 8.78 0.00 40.79 5.34
76 77 3.899981 AAGGGAAGCATCGCACGCA 62.900 57.895 8.78 0.00 40.79 5.24
77 78 4.166011 GGGAAGCATCGCACGCAC 62.166 66.667 0.60 0.00 38.34 5.34
78 79 4.505217 GGAAGCATCGCACGCACG 62.505 66.667 0.00 0.00 0.00 5.34
80 81 3.411703 GAAGCATCGCACGCACGAG 62.412 63.158 6.52 0.00 46.69 4.18
102 103 3.872728 TCGTGATCCGGCGACTCG 61.873 66.667 9.30 12.08 37.11 4.18
119 120 2.105528 GGTTCCGCCGCGATAAGA 59.894 61.111 15.93 0.00 0.00 2.10
120 121 1.300697 GGTTCCGCCGCGATAAGAT 60.301 57.895 15.93 0.00 0.00 2.40
121 122 1.557443 GGTTCCGCCGCGATAAGATG 61.557 60.000 15.93 0.00 0.00 2.90
122 123 1.954146 TTCCGCCGCGATAAGATGC 60.954 57.895 15.93 0.00 0.00 3.91
123 124 2.356313 CCGCCGCGATAAGATGCT 60.356 61.111 15.93 0.00 0.00 3.79
124 125 2.375766 CCGCCGCGATAAGATGCTC 61.376 63.158 15.93 0.00 0.00 4.26
125 126 1.372251 CGCCGCGATAAGATGCTCT 60.372 57.895 8.23 0.00 0.00 4.09
126 127 0.109735 CGCCGCGATAAGATGCTCTA 60.110 55.000 8.23 0.00 0.00 2.43
127 128 1.666023 CGCCGCGATAAGATGCTCTAA 60.666 52.381 8.23 0.00 0.00 2.10
128 129 2.611518 GCCGCGATAAGATGCTCTAAT 58.388 47.619 8.23 0.00 0.00 1.73
129 130 2.600867 GCCGCGATAAGATGCTCTAATC 59.399 50.000 8.23 0.00 0.00 1.75
130 131 3.674682 GCCGCGATAAGATGCTCTAATCT 60.675 47.826 8.23 0.00 38.59 2.40
131 132 3.856521 CCGCGATAAGATGCTCTAATCTG 59.143 47.826 8.23 0.00 36.99 2.90
132 133 4.379918 CCGCGATAAGATGCTCTAATCTGA 60.380 45.833 8.23 0.00 36.99 3.27
133 134 5.339177 CGCGATAAGATGCTCTAATCTGAT 58.661 41.667 0.00 0.00 36.99 2.90
134 135 5.455201 CGCGATAAGATGCTCTAATCTGATC 59.545 44.000 0.00 2.55 39.69 2.92
136 137 6.810888 GATAAGATGCTCTAATCTGATCGC 57.189 41.667 0.00 0.00 35.67 4.58
137 138 4.870123 AAGATGCTCTAATCTGATCGCT 57.130 40.909 0.00 0.00 36.99 4.93
138 139 4.177165 AGATGCTCTAATCTGATCGCTG 57.823 45.455 0.00 0.00 35.54 5.18
139 140 3.573538 AGATGCTCTAATCTGATCGCTGT 59.426 43.478 0.00 0.00 35.54 4.40
140 141 3.808466 TGCTCTAATCTGATCGCTGTT 57.192 42.857 0.00 0.00 0.00 3.16
141 142 3.451526 TGCTCTAATCTGATCGCTGTTG 58.548 45.455 0.00 0.00 0.00 3.33
142 143 2.220593 GCTCTAATCTGATCGCTGTTGC 59.779 50.000 0.00 0.00 0.00 4.17
143 144 2.799412 CTCTAATCTGATCGCTGTTGCC 59.201 50.000 0.00 0.00 35.36 4.52
144 145 2.168313 TCTAATCTGATCGCTGTTGCCA 59.832 45.455 0.00 0.00 35.36 4.92
145 146 1.376543 AATCTGATCGCTGTTGCCAG 58.623 50.000 0.00 0.00 41.91 4.85
146 147 0.251354 ATCTGATCGCTGTTGCCAGT 59.749 50.000 0.00 0.00 41.02 4.00
147 148 0.894835 TCTGATCGCTGTTGCCAGTA 59.105 50.000 0.00 0.00 41.02 2.74
148 149 1.002366 CTGATCGCTGTTGCCAGTAC 58.998 55.000 0.00 0.00 41.02 2.73
149 150 0.735978 TGATCGCTGTTGCCAGTACG 60.736 55.000 0.00 0.00 41.02 3.67
150 151 1.421410 GATCGCTGTTGCCAGTACGG 61.421 60.000 0.00 0.06 41.02 4.02
159 160 2.586079 CCAGTACGGCTCCGCATG 60.586 66.667 8.41 4.80 44.19 4.06
160 161 2.184322 CAGTACGGCTCCGCATGT 59.816 61.111 8.41 0.00 44.19 3.21
161 162 2.167219 CAGTACGGCTCCGCATGTG 61.167 63.158 8.41 0.00 44.19 3.21
162 163 2.890474 GTACGGCTCCGCATGTGG 60.890 66.667 19.75 19.75 44.19 4.17
163 164 4.155733 TACGGCTCCGCATGTGGG 62.156 66.667 24.82 16.08 44.19 4.61
166 167 2.676471 GGCTCCGCATGTGGGTTT 60.676 61.111 24.82 0.00 0.00 3.27
167 168 2.700773 GGCTCCGCATGTGGGTTTC 61.701 63.158 24.82 11.13 0.00 2.78
168 169 2.700773 GCTCCGCATGTGGGTTTCC 61.701 63.158 24.82 5.75 0.00 3.13
169 170 1.002134 CTCCGCATGTGGGTTTCCT 60.002 57.895 24.82 0.00 0.00 3.36
170 171 0.609131 CTCCGCATGTGGGTTTCCTT 60.609 55.000 24.82 0.00 0.00 3.36
171 172 0.608035 TCCGCATGTGGGTTTCCTTC 60.608 55.000 24.82 0.00 0.00 3.46
172 173 1.501741 CGCATGTGGGTTTCCTTCG 59.498 57.895 0.00 0.00 0.00 3.79
173 174 0.953471 CGCATGTGGGTTTCCTTCGA 60.953 55.000 0.00 0.00 0.00 3.71
174 175 1.463674 GCATGTGGGTTTCCTTCGAT 58.536 50.000 0.00 0.00 0.00 3.59
175 176 1.818674 GCATGTGGGTTTCCTTCGATT 59.181 47.619 0.00 0.00 0.00 3.34
176 177 3.013921 GCATGTGGGTTTCCTTCGATTA 58.986 45.455 0.00 0.00 0.00 1.75
177 178 3.632145 GCATGTGGGTTTCCTTCGATTAT 59.368 43.478 0.00 0.00 0.00 1.28
178 179 4.498009 GCATGTGGGTTTCCTTCGATTATG 60.498 45.833 0.00 0.00 0.00 1.90
179 180 3.616219 TGTGGGTTTCCTTCGATTATGG 58.384 45.455 0.00 0.00 0.00 2.74
180 181 3.009695 TGTGGGTTTCCTTCGATTATGGT 59.990 43.478 0.00 0.00 0.00 3.55
181 182 3.626217 GTGGGTTTCCTTCGATTATGGTC 59.374 47.826 0.00 0.00 0.00 4.02
182 183 2.870411 GGGTTTCCTTCGATTATGGTCG 59.130 50.000 0.00 0.00 42.74 4.79
188 189 2.035421 TCGATTATGGTCGACCGGG 58.965 57.895 28.70 13.83 44.87 5.73
189 190 1.663702 CGATTATGGTCGACCGGGC 60.664 63.158 28.70 14.95 44.06 6.13
190 191 1.663702 GATTATGGTCGACCGGGCG 60.664 63.158 27.95 27.95 39.43 6.13
191 192 2.079020 GATTATGGTCGACCGGGCGA 62.079 60.000 32.81 32.81 39.43 5.54
192 193 1.469335 ATTATGGTCGACCGGGCGAT 61.469 55.000 38.63 23.64 42.82 4.58
193 194 2.079020 TTATGGTCGACCGGGCGATC 62.079 60.000 38.63 37.40 42.82 3.69
196 197 4.137872 GTCGACCGGGCGATCCAA 62.138 66.667 38.63 10.66 42.82 3.53
197 198 4.137872 TCGACCGGGCGATCCAAC 62.138 66.667 32.81 0.00 35.01 3.77
199 200 4.446413 GACCGGGCGATCCAACGT 62.446 66.667 6.32 0.00 34.36 3.99
200 201 4.752879 ACCGGGCGATCCAACGTG 62.753 66.667 6.32 0.00 34.36 4.49
213 214 2.049433 ACGTGGCCGTCTCTTTCG 60.049 61.111 0.00 0.00 46.28 3.46
214 215 2.049433 CGTGGCCGTCTCTTTCGT 60.049 61.111 0.00 0.00 0.00 3.85
215 216 1.663702 CGTGGCCGTCTCTTTCGTT 60.664 57.895 0.00 0.00 0.00 3.85
216 217 1.860078 GTGGCCGTCTCTTTCGTTG 59.140 57.895 0.00 0.00 0.00 4.10
217 218 1.301401 TGGCCGTCTCTTTCGTTGG 60.301 57.895 0.00 0.00 0.00 3.77
218 219 1.301479 GGCCGTCTCTTTCGTTGGT 60.301 57.895 0.00 0.00 0.00 3.67
219 220 0.037975 GGCCGTCTCTTTCGTTGGTA 60.038 55.000 0.00 0.00 0.00 3.25
220 221 1.606224 GGCCGTCTCTTTCGTTGGTAA 60.606 52.381 0.00 0.00 0.00 2.85
221 222 1.725164 GCCGTCTCTTTCGTTGGTAAG 59.275 52.381 0.00 0.00 0.00 2.34
222 223 2.865276 GCCGTCTCTTTCGTTGGTAAGT 60.865 50.000 0.00 0.00 0.00 2.24
223 224 2.729882 CCGTCTCTTTCGTTGGTAAGTG 59.270 50.000 0.00 0.00 0.00 3.16
224 225 3.378339 CGTCTCTTTCGTTGGTAAGTGT 58.622 45.455 0.00 0.00 0.00 3.55
225 226 3.800506 CGTCTCTTTCGTTGGTAAGTGTT 59.199 43.478 0.00 0.00 0.00 3.32
226 227 4.317839 CGTCTCTTTCGTTGGTAAGTGTTG 60.318 45.833 0.00 0.00 0.00 3.33
227 228 3.558418 TCTCTTTCGTTGGTAAGTGTTGC 59.442 43.478 0.00 0.00 0.00 4.17
228 229 2.285756 TCTTTCGTTGGTAAGTGTTGCG 59.714 45.455 0.00 0.00 0.00 4.85
229 230 0.305313 TTCGTTGGTAAGTGTTGCGC 59.695 50.000 0.00 0.00 0.00 6.09
230 231 0.810426 TCGTTGGTAAGTGTTGCGCA 60.810 50.000 5.66 5.66 0.00 6.09
231 232 0.028242 CGTTGGTAAGTGTTGCGCAA 59.972 50.000 21.02 21.02 0.00 4.85
232 233 1.753956 GTTGGTAAGTGTTGCGCAAG 58.246 50.000 25.78 0.00 43.44 4.01
233 234 1.064952 GTTGGTAAGTGTTGCGCAAGT 59.935 47.619 25.78 11.77 41.68 3.16
234 235 1.384525 TGGTAAGTGTTGCGCAAGTT 58.615 45.000 25.78 18.96 41.68 2.66
235 236 1.746220 TGGTAAGTGTTGCGCAAGTTT 59.254 42.857 25.78 19.25 41.68 2.66
236 237 2.164624 TGGTAAGTGTTGCGCAAGTTTT 59.835 40.909 25.78 18.90 41.68 2.43
237 238 3.183754 GGTAAGTGTTGCGCAAGTTTTT 58.816 40.909 25.78 17.15 41.68 1.94
273 274 4.326504 CAAGTTTGCCAAGAAGGATTGT 57.673 40.909 0.00 0.00 41.22 2.71
274 275 4.301628 CAAGTTTGCCAAGAAGGATTGTC 58.698 43.478 0.00 0.00 41.22 3.18
275 276 2.554032 AGTTTGCCAAGAAGGATTGTCG 59.446 45.455 0.00 0.00 41.22 4.35
276 277 0.881118 TTGCCAAGAAGGATTGTCGC 59.119 50.000 0.00 0.00 41.22 5.19
277 278 0.250684 TGCCAAGAAGGATTGTCGCA 60.251 50.000 0.00 0.00 41.22 5.10
278 279 0.881118 GCCAAGAAGGATTGTCGCAA 59.119 50.000 0.00 0.00 41.22 4.85
279 280 1.269448 GCCAAGAAGGATTGTCGCAAA 59.731 47.619 0.00 0.00 41.22 3.68
280 281 2.288152 GCCAAGAAGGATTGTCGCAAAA 60.288 45.455 0.00 0.00 41.22 2.44
281 282 3.568538 CCAAGAAGGATTGTCGCAAAAG 58.431 45.455 0.00 0.00 41.22 2.27
282 283 3.568538 CAAGAAGGATTGTCGCAAAAGG 58.431 45.455 0.00 0.00 0.00 3.11
283 284 3.140325 AGAAGGATTGTCGCAAAAGGA 57.860 42.857 0.00 0.00 0.00 3.36
284 285 3.690460 AGAAGGATTGTCGCAAAAGGAT 58.310 40.909 0.00 0.00 0.00 3.24
285 286 3.441572 AGAAGGATTGTCGCAAAAGGATG 59.558 43.478 0.00 0.00 0.00 3.51
286 287 1.474077 AGGATTGTCGCAAAAGGATGC 59.526 47.619 0.00 0.00 42.94 3.91
287 288 1.469767 GGATTGTCGCAAAAGGATGCC 60.470 52.381 0.00 0.00 43.47 4.40
288 289 0.171007 ATTGTCGCAAAAGGATGCCG 59.829 50.000 0.00 0.00 43.47 5.69
289 290 2.202479 GTCGCAAAAGGATGCCGC 60.202 61.111 0.00 0.00 43.47 6.53
290 291 2.359850 TCGCAAAAGGATGCCGCT 60.360 55.556 0.00 0.00 43.47 5.52
291 292 1.078778 TCGCAAAAGGATGCCGCTA 60.079 52.632 0.00 0.00 43.47 4.26
292 293 1.089481 TCGCAAAAGGATGCCGCTAG 61.089 55.000 0.00 0.00 43.47 3.42
293 294 1.729881 GCAAAAGGATGCCGCTAGG 59.270 57.895 0.00 0.00 40.49 3.02
294 295 1.032114 GCAAAAGGATGCCGCTAGGT 61.032 55.000 0.00 0.00 40.49 3.08
295 296 1.017387 CAAAAGGATGCCGCTAGGTC 58.983 55.000 0.00 0.00 40.50 3.85
296 297 0.912486 AAAAGGATGCCGCTAGGTCT 59.088 50.000 0.00 0.00 40.50 3.85
297 298 0.466124 AAAGGATGCCGCTAGGTCTC 59.534 55.000 0.00 0.00 40.50 3.36
298 299 1.403687 AAGGATGCCGCTAGGTCTCC 61.404 60.000 0.00 1.07 39.22 3.71
299 300 1.834822 GGATGCCGCTAGGTCTCCT 60.835 63.158 0.00 0.00 40.50 3.69
300 301 1.663173 GATGCCGCTAGGTCTCCTC 59.337 63.158 0.00 0.00 40.50 3.71
301 302 1.075970 ATGCCGCTAGGTCTCCTCA 60.076 57.895 0.00 0.00 40.50 3.86
302 303 1.112315 ATGCCGCTAGGTCTCCTCAG 61.112 60.000 0.00 0.00 40.50 3.35
303 304 1.755008 GCCGCTAGGTCTCCTCAGT 60.755 63.158 0.00 0.00 40.50 3.41
304 305 1.324005 GCCGCTAGGTCTCCTCAGTT 61.324 60.000 0.00 0.00 40.50 3.16
305 306 0.457851 CCGCTAGGTCTCCTCAGTTG 59.542 60.000 0.00 0.00 34.61 3.16
306 307 1.464734 CGCTAGGTCTCCTCAGTTGA 58.535 55.000 0.00 0.00 34.61 3.18
307 308 1.403679 CGCTAGGTCTCCTCAGTTGAG 59.596 57.143 2.09 2.09 41.71 3.02
308 309 2.452505 GCTAGGTCTCCTCAGTTGAGT 58.547 52.381 8.23 0.00 40.48 3.41
309 310 3.622630 GCTAGGTCTCCTCAGTTGAGTA 58.377 50.000 8.23 0.00 40.48 2.59
310 311 4.017808 GCTAGGTCTCCTCAGTTGAGTAA 58.982 47.826 8.23 0.00 40.48 2.24
311 312 4.142337 GCTAGGTCTCCTCAGTTGAGTAAC 60.142 50.000 8.23 3.59 40.48 2.50
312 313 3.845860 AGGTCTCCTCAGTTGAGTAACA 58.154 45.455 8.23 0.00 40.48 2.41
313 314 4.421131 AGGTCTCCTCAGTTGAGTAACAT 58.579 43.478 8.23 0.00 40.48 2.71
314 315 5.580998 AGGTCTCCTCAGTTGAGTAACATA 58.419 41.667 8.23 0.00 40.48 2.29
315 316 6.017192 AGGTCTCCTCAGTTGAGTAACATAA 58.983 40.000 8.23 0.00 40.48 1.90
316 317 6.071278 AGGTCTCCTCAGTTGAGTAACATAAC 60.071 42.308 8.23 0.00 40.48 1.89
317 318 6.295123 GGTCTCCTCAGTTGAGTAACATAACA 60.295 42.308 8.23 0.00 40.48 2.41
318 319 7.324178 GTCTCCTCAGTTGAGTAACATAACAT 58.676 38.462 8.23 0.00 40.48 2.71
319 320 7.276658 GTCTCCTCAGTTGAGTAACATAACATG 59.723 40.741 8.23 0.00 40.48 3.21
320 321 7.004555 TCCTCAGTTGAGTAACATAACATGT 57.995 36.000 8.23 0.00 42.04 3.21
321 322 8.129496 TCCTCAGTTGAGTAACATAACATGTA 57.871 34.615 0.00 0.00 40.57 2.29
322 323 8.251026 TCCTCAGTTGAGTAACATAACATGTAG 58.749 37.037 0.00 0.00 40.57 2.74
323 324 8.035394 CCTCAGTTGAGTAACATAACATGTAGT 58.965 37.037 0.00 0.00 40.57 2.73
347 348 9.961265 AGTAAAAAGGAAACTAGTAATTTGCAC 57.039 29.630 0.00 0.00 42.68 4.57
348 349 9.738832 GTAAAAAGGAAACTAGTAATTTGCACA 57.261 29.630 0.00 0.00 42.68 4.57
349 350 8.871686 AAAAAGGAAACTAGTAATTTGCACAG 57.128 30.769 0.00 0.00 42.68 3.66
350 351 7.582667 AAAGGAAACTAGTAATTTGCACAGT 57.417 32.000 0.00 0.00 42.68 3.55
351 352 6.803154 AGGAAACTAGTAATTTGCACAGTC 57.197 37.500 0.00 0.00 40.61 3.51
352 353 6.534634 AGGAAACTAGTAATTTGCACAGTCT 58.465 36.000 0.00 0.00 40.61 3.24
353 354 6.998673 AGGAAACTAGTAATTTGCACAGTCTT 59.001 34.615 0.00 0.00 40.61 3.01
354 355 8.154856 AGGAAACTAGTAATTTGCACAGTCTTA 58.845 33.333 0.00 0.00 40.61 2.10
355 356 8.443937 GGAAACTAGTAATTTGCACAGTCTTAG 58.556 37.037 0.00 0.00 0.00 2.18
356 357 8.904099 AAACTAGTAATTTGCACAGTCTTAGT 57.096 30.769 0.00 0.00 0.00 2.24
357 358 7.891183 ACTAGTAATTTGCACAGTCTTAGTG 57.109 36.000 0.00 0.00 39.92 2.74
358 359 7.442656 ACTAGTAATTTGCACAGTCTTAGTGT 58.557 34.615 0.00 0.00 39.17 3.55
359 360 8.582437 ACTAGTAATTTGCACAGTCTTAGTGTA 58.418 33.333 0.00 0.00 39.17 2.90
360 361 9.419297 CTAGTAATTTGCACAGTCTTAGTGTAA 57.581 33.333 0.00 0.00 39.30 2.41
361 362 8.311650 AGTAATTTGCACAGTCTTAGTGTAAG 57.688 34.615 0.00 0.00 41.39 2.34
362 363 8.148351 AGTAATTTGCACAGTCTTAGTGTAAGA 58.852 33.333 0.00 0.00 41.39 2.10
363 364 7.986085 AATTTGCACAGTCTTAGTGTAAGAT 57.014 32.000 0.00 0.00 45.63 2.40
364 365 7.602517 ATTTGCACAGTCTTAGTGTAAGATC 57.397 36.000 0.00 0.00 45.63 2.75
365 366 5.984695 TGCACAGTCTTAGTGTAAGATCT 57.015 39.130 0.00 0.00 45.63 2.75
366 367 5.955488 TGCACAGTCTTAGTGTAAGATCTC 58.045 41.667 0.00 0.00 45.63 2.75
367 368 5.476945 TGCACAGTCTTAGTGTAAGATCTCA 59.523 40.000 0.00 0.00 45.63 3.27
368 369 6.153510 TGCACAGTCTTAGTGTAAGATCTCAT 59.846 38.462 0.00 0.00 45.63 2.90
369 370 7.038659 GCACAGTCTTAGTGTAAGATCTCATT 58.961 38.462 0.00 0.00 45.63 2.57
370 371 8.191446 GCACAGTCTTAGTGTAAGATCTCATTA 58.809 37.037 0.00 0.00 45.63 1.90
386 387 9.684448 AGATCTCATTAATACAACATACGACTG 57.316 33.333 0.00 0.00 0.00 3.51
387 388 9.678941 GATCTCATTAATACAACATACGACTGA 57.321 33.333 0.00 0.00 0.00 3.41
388 389 8.851960 TCTCATTAATACAACATACGACTGAC 57.148 34.615 0.00 0.00 0.00 3.51
389 390 8.463607 TCTCATTAATACAACATACGACTGACA 58.536 33.333 0.00 0.00 0.00 3.58
390 391 8.402326 TCATTAATACAACATACGACTGACAC 57.598 34.615 0.00 0.00 0.00 3.67
391 392 8.030106 TCATTAATACAACATACGACTGACACA 58.970 33.333 0.00 0.00 0.00 3.72
392 393 8.817100 CATTAATACAACATACGACTGACACAT 58.183 33.333 0.00 0.00 0.00 3.21
394 395 9.857957 TTAATACAACATACGACTGACACATAA 57.142 29.630 0.00 0.00 0.00 1.90
395 396 8.942338 AATACAACATACGACTGACACATAAT 57.058 30.769 0.00 0.00 0.00 1.28
396 397 8.942338 ATACAACATACGACTGACACATAATT 57.058 30.769 0.00 0.00 0.00 1.40
398 399 8.766000 ACAACATACGACTGACACATAATTAA 57.234 30.769 0.00 0.00 0.00 1.40
399 400 8.869897 ACAACATACGACTGACACATAATTAAG 58.130 33.333 0.00 0.00 0.00 1.85
400 401 8.869897 CAACATACGACTGACACATAATTAAGT 58.130 33.333 0.00 0.00 0.00 2.24
401 402 8.630278 ACATACGACTGACACATAATTAAGTC 57.370 34.615 0.00 8.37 0.00 3.01
402 403 8.467598 ACATACGACTGACACATAATTAAGTCT 58.532 33.333 13.69 0.00 33.49 3.24
403 404 9.302345 CATACGACTGACACATAATTAAGTCTT 57.698 33.333 13.69 7.08 33.49 3.01
404 405 7.582435 ACGACTGACACATAATTAAGTCTTG 57.418 36.000 13.69 10.29 33.49 3.02
405 406 6.590292 ACGACTGACACATAATTAAGTCTTGG 59.410 38.462 13.69 8.69 33.49 3.61
406 407 6.590292 CGACTGACACATAATTAAGTCTTGGT 59.410 38.462 13.69 10.69 33.49 3.67
407 408 7.201444 CGACTGACACATAATTAAGTCTTGGTC 60.201 40.741 13.69 15.01 33.49 4.02
408 409 6.590292 ACTGACACATAATTAAGTCTTGGTCG 59.410 38.462 13.69 7.73 32.41 4.79
409 410 6.693466 TGACACATAATTAAGTCTTGGTCGA 58.307 36.000 13.69 0.00 32.41 4.20
410 411 7.327975 TGACACATAATTAAGTCTTGGTCGAT 58.672 34.615 13.69 0.00 32.41 3.59
411 412 7.822334 TGACACATAATTAAGTCTTGGTCGATT 59.178 33.333 13.69 0.00 32.41 3.34
412 413 7.974675 ACACATAATTAAGTCTTGGTCGATTG 58.025 34.615 0.00 0.00 0.00 2.67
413 414 7.822334 ACACATAATTAAGTCTTGGTCGATTGA 59.178 33.333 0.00 0.00 0.00 2.57
414 415 8.331022 CACATAATTAAGTCTTGGTCGATTGAG 58.669 37.037 0.00 0.00 0.00 3.02
415 416 8.258007 ACATAATTAAGTCTTGGTCGATTGAGA 58.742 33.333 0.00 0.00 0.00 3.27
416 417 9.265901 CATAATTAAGTCTTGGTCGATTGAGAT 57.734 33.333 0.00 0.00 0.00 2.75
417 418 9.838339 ATAATTAAGTCTTGGTCGATTGAGATT 57.162 29.630 0.00 0.00 0.00 2.40
418 419 8.567285 AATTAAGTCTTGGTCGATTGAGATTT 57.433 30.769 0.00 0.00 0.00 2.17
419 420 9.667107 AATTAAGTCTTGGTCGATTGAGATTTA 57.333 29.630 0.00 0.00 0.00 1.40
420 421 8.703604 TTAAGTCTTGGTCGATTGAGATTTAG 57.296 34.615 0.00 0.00 0.00 1.85
421 422 5.112686 AGTCTTGGTCGATTGAGATTTAGC 58.887 41.667 0.00 0.00 0.00 3.09
422 423 4.870426 GTCTTGGTCGATTGAGATTTAGCA 59.130 41.667 0.00 0.00 0.00 3.49
423 424 5.351465 GTCTTGGTCGATTGAGATTTAGCAA 59.649 40.000 0.00 0.00 0.00 3.91
424 425 5.582269 TCTTGGTCGATTGAGATTTAGCAAG 59.418 40.000 0.00 0.00 41.43 4.01
425 426 4.191544 TGGTCGATTGAGATTTAGCAAGG 58.808 43.478 0.00 0.00 0.00 3.61
426 427 3.002759 GGTCGATTGAGATTTAGCAAGGC 59.997 47.826 0.00 0.00 0.00 4.35
427 428 3.623060 GTCGATTGAGATTTAGCAAGGCA 59.377 43.478 0.00 0.00 0.00 4.75
428 429 3.873361 TCGATTGAGATTTAGCAAGGCAG 59.127 43.478 0.00 0.00 0.00 4.85
429 430 3.003068 CGATTGAGATTTAGCAAGGCAGG 59.997 47.826 0.00 0.00 0.00 4.85
430 431 3.439857 TTGAGATTTAGCAAGGCAGGT 57.560 42.857 0.00 0.00 0.00 4.00
431 432 3.439857 TGAGATTTAGCAAGGCAGGTT 57.560 42.857 0.00 0.00 0.00 3.50
432 433 3.084039 TGAGATTTAGCAAGGCAGGTTG 58.916 45.455 0.00 0.00 0.00 3.77
456 457 8.662781 TGCAAACATATTGACTAATCTCCTAC 57.337 34.615 0.00 0.00 0.00 3.18
457 458 7.715249 TGCAAACATATTGACTAATCTCCTACC 59.285 37.037 0.00 0.00 0.00 3.18
458 459 7.173390 GCAAACATATTGACTAATCTCCTACCC 59.827 40.741 0.00 0.00 0.00 3.69
459 460 7.931015 AACATATTGACTAATCTCCTACCCA 57.069 36.000 0.00 0.00 0.00 4.51
460 461 7.546250 ACATATTGACTAATCTCCTACCCAG 57.454 40.000 0.00 0.00 0.00 4.45
461 462 7.076446 ACATATTGACTAATCTCCTACCCAGT 58.924 38.462 0.00 0.00 0.00 4.00
462 463 7.569111 ACATATTGACTAATCTCCTACCCAGTT 59.431 37.037 0.00 0.00 0.00 3.16
463 464 6.893020 ATTGACTAATCTCCTACCCAGTTT 57.107 37.500 0.00 0.00 0.00 2.66
464 465 6.697641 TTGACTAATCTCCTACCCAGTTTT 57.302 37.500 0.00 0.00 0.00 2.43
465 466 6.295719 TGACTAATCTCCTACCCAGTTTTC 57.704 41.667 0.00 0.00 0.00 2.29
466 467 5.783360 TGACTAATCTCCTACCCAGTTTTCA 59.217 40.000 0.00 0.00 0.00 2.69
467 468 6.443849 TGACTAATCTCCTACCCAGTTTTCAT 59.556 38.462 0.00 0.00 0.00 2.57
468 469 6.653989 ACTAATCTCCTACCCAGTTTTCATG 58.346 40.000 0.00 0.00 0.00 3.07
469 470 5.779241 AATCTCCTACCCAGTTTTCATGA 57.221 39.130 0.00 0.00 0.00 3.07
470 471 4.553330 TCTCCTACCCAGTTTTCATGAC 57.447 45.455 0.00 0.00 0.00 3.06
471 472 3.263425 TCTCCTACCCAGTTTTCATGACC 59.737 47.826 0.00 0.00 0.00 4.02
472 473 2.983192 TCCTACCCAGTTTTCATGACCA 59.017 45.455 0.00 0.00 0.00 4.02
473 474 3.591527 TCCTACCCAGTTTTCATGACCAT 59.408 43.478 0.00 0.00 0.00 3.55
474 475 3.696051 CCTACCCAGTTTTCATGACCATG 59.304 47.826 0.00 3.70 40.09 3.66
475 476 3.243359 ACCCAGTTTTCATGACCATGT 57.757 42.857 9.53 0.00 39.72 3.21
476 477 2.892852 ACCCAGTTTTCATGACCATGTG 59.107 45.455 9.53 1.26 39.72 3.21
477 478 2.892852 CCCAGTTTTCATGACCATGTGT 59.107 45.455 9.53 0.00 39.72 3.72
478 479 3.057315 CCCAGTTTTCATGACCATGTGTC 60.057 47.826 9.53 7.22 44.72 3.67
479 480 3.822735 CCAGTTTTCATGACCATGTGTCT 59.177 43.478 9.53 3.08 44.75 3.41
480 481 4.279169 CCAGTTTTCATGACCATGTGTCTT 59.721 41.667 9.53 6.45 44.75 3.01
481 482 5.221303 CCAGTTTTCATGACCATGTGTCTTT 60.221 40.000 9.53 1.97 44.75 2.52
482 483 5.688621 CAGTTTTCATGACCATGTGTCTTTG 59.311 40.000 9.53 11.17 44.75 2.77
483 484 3.921119 TTCATGACCATGTGTCTTTGC 57.079 42.857 9.53 0.00 44.75 3.68
484 485 3.144657 TCATGACCATGTGTCTTTGCT 57.855 42.857 9.53 0.00 44.75 3.91
485 486 3.489355 TCATGACCATGTGTCTTTGCTT 58.511 40.909 9.53 0.00 44.75 3.91
486 487 3.503363 TCATGACCATGTGTCTTTGCTTC 59.497 43.478 9.53 0.00 44.75 3.86
487 488 2.229792 TGACCATGTGTCTTTGCTTCC 58.770 47.619 13.32 0.00 44.75 3.46
488 489 2.229792 GACCATGTGTCTTTGCTTCCA 58.770 47.619 6.98 0.00 41.03 3.53
489 490 2.227388 GACCATGTGTCTTTGCTTCCAG 59.773 50.000 6.98 0.00 41.03 3.86
490 491 1.542915 CCATGTGTCTTTGCTTCCAGG 59.457 52.381 0.00 0.00 0.00 4.45
491 492 1.068055 CATGTGTCTTTGCTTCCAGGC 60.068 52.381 0.00 0.00 0.00 4.85
492 493 0.106769 TGTGTCTTTGCTTCCAGGCA 60.107 50.000 0.00 0.00 40.74 4.75
493 494 1.251251 GTGTCTTTGCTTCCAGGCAT 58.749 50.000 0.00 0.00 42.09 4.40
494 495 1.068055 GTGTCTTTGCTTCCAGGCATG 60.068 52.381 0.00 0.00 42.09 4.06
495 496 1.251251 GTCTTTGCTTCCAGGCATGT 58.749 50.000 0.00 0.00 42.09 3.21
496 497 1.615392 GTCTTTGCTTCCAGGCATGTT 59.385 47.619 0.00 0.00 42.09 2.71
497 498 2.819608 GTCTTTGCTTCCAGGCATGTTA 59.180 45.455 0.00 0.00 42.09 2.41
498 499 3.445096 GTCTTTGCTTCCAGGCATGTTAT 59.555 43.478 0.00 0.00 42.09 1.89
499 500 4.640201 GTCTTTGCTTCCAGGCATGTTATA 59.360 41.667 0.00 0.00 42.09 0.98
500 501 4.640201 TCTTTGCTTCCAGGCATGTTATAC 59.360 41.667 0.00 0.00 42.09 1.47
501 502 3.931907 TGCTTCCAGGCATGTTATACT 57.068 42.857 0.00 0.00 37.29 2.12
502 503 4.235079 TGCTTCCAGGCATGTTATACTT 57.765 40.909 0.00 0.00 37.29 2.24
503 504 4.599041 TGCTTCCAGGCATGTTATACTTT 58.401 39.130 0.00 0.00 37.29 2.66
504 505 4.398988 TGCTTCCAGGCATGTTATACTTTG 59.601 41.667 0.00 0.00 37.29 2.77
505 506 4.734695 GCTTCCAGGCATGTTATACTTTGC 60.735 45.833 0.00 0.00 0.00 3.68
506 507 4.235079 TCCAGGCATGTTATACTTTGCT 57.765 40.909 0.00 0.00 0.00 3.91
507 508 5.366482 TCCAGGCATGTTATACTTTGCTA 57.634 39.130 0.00 0.00 0.00 3.49
508 509 5.940617 TCCAGGCATGTTATACTTTGCTAT 58.059 37.500 0.00 0.00 0.00 2.97
509 510 6.364701 TCCAGGCATGTTATACTTTGCTATT 58.635 36.000 0.00 0.00 0.00 1.73
510 511 7.513856 TCCAGGCATGTTATACTTTGCTATTA 58.486 34.615 0.00 0.00 0.00 0.98
511 512 7.661437 TCCAGGCATGTTATACTTTGCTATTAG 59.339 37.037 0.00 0.00 0.00 1.73
512 513 7.661437 CCAGGCATGTTATACTTTGCTATTAGA 59.339 37.037 0.00 0.00 0.00 2.10
513 514 8.499162 CAGGCATGTTATACTTTGCTATTAGAC 58.501 37.037 0.00 0.00 0.00 2.59
514 515 8.210946 AGGCATGTTATACTTTGCTATTAGACA 58.789 33.333 0.00 0.00 0.00 3.41
515 516 9.003658 GGCATGTTATACTTTGCTATTAGACAT 57.996 33.333 0.00 0.00 0.00 3.06
525 526 8.847196 ACTTTGCTATTAGACATATCGTGTAGA 58.153 33.333 0.00 0.00 42.36 2.59
526 527 9.678941 CTTTGCTATTAGACATATCGTGTAGAA 57.321 33.333 0.00 0.00 42.36 2.10
536 537 8.566260 AGACATATCGTGTAGAATAGTAACACC 58.434 37.037 3.51 0.00 42.36 4.16
537 538 8.229253 ACATATCGTGTAGAATAGTAACACCA 57.771 34.615 3.51 0.00 40.28 4.17
538 539 8.689061 ACATATCGTGTAGAATAGTAACACCAA 58.311 33.333 3.51 0.00 40.28 3.67
539 540 9.524106 CATATCGTGTAGAATAGTAACACCAAA 57.476 33.333 3.51 0.00 40.28 3.28
542 543 8.470040 TCGTGTAGAATAGTAACACCAAATTC 57.530 34.615 3.51 0.00 40.28 2.17
543 544 8.308931 TCGTGTAGAATAGTAACACCAAATTCT 58.691 33.333 0.00 0.00 40.28 2.40
544 545 8.932791 CGTGTAGAATAGTAACACCAAATTCTT 58.067 33.333 1.63 0.00 40.28 2.52
550 551 9.626045 GAATAGTAACACCAAATTCTTGAAAGG 57.374 33.333 0.00 0.00 34.14 3.11
551 552 5.842907 AGTAACACCAAATTCTTGAAAGGC 58.157 37.500 0.00 0.00 34.14 4.35
552 553 4.751767 AACACCAAATTCTTGAAAGGCA 57.248 36.364 0.00 0.00 34.14 4.75
553 554 4.961438 ACACCAAATTCTTGAAAGGCAT 57.039 36.364 0.00 0.00 34.14 4.40
559 560 6.705825 ACCAAATTCTTGAAAGGCATTAACAC 59.294 34.615 0.00 0.00 34.14 3.32
611 612 3.318557 TGATGTGAATTTGCTTGAGTGCA 59.681 39.130 0.00 0.00 41.65 4.57
1043 1044 4.792068 ACTTGTGTGAGGGAAGAAAATGA 58.208 39.130 0.00 0.00 0.00 2.57
1160 1161 4.767409 CCCGATTTCTTTCTTTTTCCCTCT 59.233 41.667 0.00 0.00 0.00 3.69
2454 2457 3.626924 AACGCCACCTCGCTCCTT 61.627 61.111 0.00 0.00 0.00 3.36
2513 2516 1.739929 CGGGAGCGTGTGCATAACA 60.740 57.895 0.00 0.00 46.23 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.261951 CCTACATGTTCGGCGCCG 61.262 66.667 42.13 42.13 41.35 6.46
13 14 3.573491 GCCTACATGTTCGGCGCC 61.573 66.667 19.07 19.07 33.64 6.53
16 17 2.171725 GGTCGCCTACATGTTCGGC 61.172 63.158 22.29 22.29 40.40 5.54
17 18 0.806102 CAGGTCGCCTACATGTTCGG 60.806 60.000 2.30 6.58 35.16 4.30
18 19 2.665777 CAGGTCGCCTACATGTTCG 58.334 57.895 2.30 6.08 35.16 3.95
22 23 0.447801 GCAAACAGGTCGCCTACATG 59.552 55.000 0.00 0.00 45.41 3.21
23 24 1.019278 CGCAAACAGGTCGCCTACAT 61.019 55.000 0.00 0.00 29.64 2.29
24 25 1.666553 CGCAAACAGGTCGCCTACA 60.667 57.895 0.00 0.00 29.64 2.74
25 26 2.388232 CCGCAAACAGGTCGCCTAC 61.388 63.158 0.00 0.00 29.64 3.18
26 27 2.047655 CCGCAAACAGGTCGCCTA 60.048 61.111 0.00 0.00 29.64 3.93
30 31 4.072088 GACGCCGCAAACAGGTCG 62.072 66.667 0.00 0.00 35.51 4.79
31 32 3.723348 GGACGCCGCAAACAGGTC 61.723 66.667 0.00 0.00 0.00 3.85
47 48 4.715523 TTCCCTTCCTTGGCGCGG 62.716 66.667 8.83 0.00 0.00 6.46
48 49 3.127533 CTTCCCTTCCTTGGCGCG 61.128 66.667 0.00 0.00 0.00 6.86
49 50 3.443925 GCTTCCCTTCCTTGGCGC 61.444 66.667 0.00 0.00 0.00 6.53
50 51 1.379044 ATGCTTCCCTTCCTTGGCG 60.379 57.895 0.00 0.00 0.00 5.69
51 52 1.379642 CGATGCTTCCCTTCCTTGGC 61.380 60.000 0.00 0.00 0.00 4.52
52 53 1.379642 GCGATGCTTCCCTTCCTTGG 61.380 60.000 0.00 0.00 0.00 3.61
53 54 0.677731 TGCGATGCTTCCCTTCCTTG 60.678 55.000 0.00 0.00 0.00 3.61
54 55 0.678048 GTGCGATGCTTCCCTTCCTT 60.678 55.000 0.00 0.00 0.00 3.36
55 56 1.078143 GTGCGATGCTTCCCTTCCT 60.078 57.895 0.00 0.00 0.00 3.36
56 57 2.464459 CGTGCGATGCTTCCCTTCC 61.464 63.158 0.00 0.00 0.00 3.46
57 58 3.093278 CGTGCGATGCTTCCCTTC 58.907 61.111 0.00 0.00 0.00 3.46
58 59 3.127533 GCGTGCGATGCTTCCCTT 61.128 61.111 0.00 0.00 0.00 3.95
59 60 4.393155 TGCGTGCGATGCTTCCCT 62.393 61.111 0.00 0.00 0.00 4.20
60 61 4.166011 GTGCGTGCGATGCTTCCC 62.166 66.667 0.00 0.00 0.00 3.97
61 62 4.505217 CGTGCGTGCGATGCTTCC 62.505 66.667 0.00 0.00 0.00 3.46
62 63 3.411703 CTCGTGCGTGCGATGCTTC 62.412 63.158 4.15 0.00 40.29 3.86
63 64 3.481903 CTCGTGCGTGCGATGCTT 61.482 61.111 4.15 0.00 40.29 3.91
102 103 1.300697 ATCTTATCGCGGCGGAACC 60.301 57.895 23.46 0.00 0.00 3.62
103 104 1.853319 CATCTTATCGCGGCGGAAC 59.147 57.895 23.46 0.00 0.00 3.62
104 105 1.954146 GCATCTTATCGCGGCGGAA 60.954 57.895 23.46 15.50 0.00 4.30
105 106 2.355837 GCATCTTATCGCGGCGGA 60.356 61.111 23.46 12.04 0.00 5.54
106 107 2.356313 AGCATCTTATCGCGGCGG 60.356 61.111 23.46 6.26 0.00 6.13
107 108 3.150895 GAGCATCTTATCGCGGCG 58.849 61.111 17.70 17.70 0.00 6.46
118 119 3.911868 ACAGCGATCAGATTAGAGCATC 58.088 45.455 0.00 0.00 0.00 3.91
119 120 4.056740 CAACAGCGATCAGATTAGAGCAT 58.943 43.478 0.00 0.00 0.00 3.79
120 121 3.451526 CAACAGCGATCAGATTAGAGCA 58.548 45.455 0.00 0.00 0.00 4.26
121 122 2.220593 GCAACAGCGATCAGATTAGAGC 59.779 50.000 0.00 0.00 0.00 4.09
122 123 2.799412 GGCAACAGCGATCAGATTAGAG 59.201 50.000 0.00 0.00 0.00 2.43
123 124 2.168313 TGGCAACAGCGATCAGATTAGA 59.832 45.455 0.00 0.00 46.17 2.10
124 125 2.554142 TGGCAACAGCGATCAGATTAG 58.446 47.619 0.00 0.00 46.17 1.73
125 126 2.689553 TGGCAACAGCGATCAGATTA 57.310 45.000 0.00 0.00 46.17 1.75
126 127 3.556817 TGGCAACAGCGATCAGATT 57.443 47.368 0.00 0.00 46.17 2.40
151 152 0.609131 AAGGAAACCCACATGCGGAG 60.609 55.000 0.00 0.00 0.00 4.63
152 153 0.608035 GAAGGAAACCCACATGCGGA 60.608 55.000 0.00 0.00 0.00 5.54
153 154 1.883021 GAAGGAAACCCACATGCGG 59.117 57.895 0.00 0.00 0.00 5.69
154 155 0.953471 TCGAAGGAAACCCACATGCG 60.953 55.000 0.00 0.00 0.00 4.73
155 156 1.463674 ATCGAAGGAAACCCACATGC 58.536 50.000 0.00 0.00 0.00 4.06
156 157 4.036734 CCATAATCGAAGGAAACCCACATG 59.963 45.833 0.00 0.00 0.00 3.21
157 158 4.207165 CCATAATCGAAGGAAACCCACAT 58.793 43.478 0.00 0.00 0.00 3.21
158 159 3.009695 ACCATAATCGAAGGAAACCCACA 59.990 43.478 0.00 0.00 0.00 4.17
159 160 3.617284 ACCATAATCGAAGGAAACCCAC 58.383 45.455 0.00 0.00 0.00 4.61
160 161 3.680475 CGACCATAATCGAAGGAAACCCA 60.680 47.826 0.00 0.00 45.13 4.51
161 162 2.870411 CGACCATAATCGAAGGAAACCC 59.130 50.000 0.00 0.00 45.13 4.11
171 172 1.663702 GCCCGGTCGACCATAATCG 60.664 63.158 32.80 17.76 43.63 3.34
172 173 1.663702 CGCCCGGTCGACCATAATC 60.664 63.158 32.80 15.63 35.14 1.75
173 174 1.469335 ATCGCCCGGTCGACCATAAT 61.469 55.000 32.80 15.71 41.62 1.28
174 175 2.079020 GATCGCCCGGTCGACCATAA 62.079 60.000 32.80 14.15 41.62 1.90
175 176 2.520020 ATCGCCCGGTCGACCATA 60.520 61.111 32.80 13.80 41.62 2.74
176 177 3.912907 GATCGCCCGGTCGACCAT 61.913 66.667 32.80 18.94 41.62 3.55
179 180 4.137872 TTGGATCGCCCGGTCGAC 62.138 66.667 10.96 7.13 41.62 4.20
180 181 4.137872 GTTGGATCGCCCGGTCGA 62.138 66.667 11.19 11.19 43.09 4.20
182 183 4.446413 ACGTTGGATCGCCCGGTC 62.446 66.667 0.00 0.00 37.93 4.79
183 184 4.752879 CACGTTGGATCGCCCGGT 62.753 66.667 0.00 0.00 37.93 5.28
198 199 1.566018 CCAACGAAAGAGACGGCCAC 61.566 60.000 2.24 0.00 34.93 5.01
199 200 1.301401 CCAACGAAAGAGACGGCCA 60.301 57.895 2.24 0.00 34.93 5.36
200 201 0.037975 TACCAACGAAAGAGACGGCC 60.038 55.000 0.00 0.00 34.93 6.13
201 202 1.725164 CTTACCAACGAAAGAGACGGC 59.275 52.381 0.00 0.00 34.93 5.68
202 203 2.729882 CACTTACCAACGAAAGAGACGG 59.270 50.000 0.00 0.00 34.93 4.79
203 204 3.378339 ACACTTACCAACGAAAGAGACG 58.622 45.455 0.00 0.00 0.00 4.18
204 205 4.552184 GCAACACTTACCAACGAAAGAGAC 60.552 45.833 0.00 0.00 0.00 3.36
205 206 3.558418 GCAACACTTACCAACGAAAGAGA 59.442 43.478 0.00 0.00 0.00 3.10
206 207 3.603857 CGCAACACTTACCAACGAAAGAG 60.604 47.826 0.00 0.00 0.00 2.85
207 208 2.285756 CGCAACACTTACCAACGAAAGA 59.714 45.455 0.00 0.00 0.00 2.52
208 209 2.635444 CGCAACACTTACCAACGAAAG 58.365 47.619 0.00 0.00 0.00 2.62
209 210 1.268133 GCGCAACACTTACCAACGAAA 60.268 47.619 0.30 0.00 0.00 3.46
210 211 0.305313 GCGCAACACTTACCAACGAA 59.695 50.000 0.30 0.00 0.00 3.85
211 212 0.810426 TGCGCAACACTTACCAACGA 60.810 50.000 8.16 0.00 0.00 3.85
212 213 0.028242 TTGCGCAACACTTACCAACG 59.972 50.000 21.02 0.00 0.00 4.10
213 214 1.064952 ACTTGCGCAACACTTACCAAC 59.935 47.619 21.02 0.00 0.00 3.77
214 215 1.384525 ACTTGCGCAACACTTACCAA 58.615 45.000 21.02 0.00 0.00 3.67
215 216 1.384525 AACTTGCGCAACACTTACCA 58.615 45.000 21.02 0.00 0.00 3.25
216 217 2.485266 AAACTTGCGCAACACTTACC 57.515 45.000 21.02 0.00 0.00 2.85
252 253 4.301628 GACAATCCTTCTTGGCAAACTTG 58.698 43.478 0.00 2.07 34.11 3.16
253 254 3.004734 CGACAATCCTTCTTGGCAAACTT 59.995 43.478 0.00 0.00 33.50 2.66
254 255 2.554032 CGACAATCCTTCTTGGCAAACT 59.446 45.455 0.00 0.00 33.50 2.66
255 256 2.922335 GCGACAATCCTTCTTGGCAAAC 60.922 50.000 0.00 0.00 33.50 2.93
256 257 1.269448 GCGACAATCCTTCTTGGCAAA 59.731 47.619 0.00 0.00 33.50 3.68
257 258 0.881118 GCGACAATCCTTCTTGGCAA 59.119 50.000 0.00 0.00 33.50 4.52
258 259 0.250684 TGCGACAATCCTTCTTGGCA 60.251 50.000 0.00 0.00 33.50 4.92
259 260 0.881118 TTGCGACAATCCTTCTTGGC 59.119 50.000 0.00 0.00 35.26 4.52
260 261 3.568538 CTTTTGCGACAATCCTTCTTGG 58.431 45.455 0.00 0.00 37.10 3.61
261 262 3.253188 TCCTTTTGCGACAATCCTTCTTG 59.747 43.478 0.00 0.00 0.00 3.02
262 263 3.486383 TCCTTTTGCGACAATCCTTCTT 58.514 40.909 0.00 0.00 0.00 2.52
263 264 3.140325 TCCTTTTGCGACAATCCTTCT 57.860 42.857 0.00 0.00 0.00 2.85
264 265 3.762779 CATCCTTTTGCGACAATCCTTC 58.237 45.455 0.00 0.00 0.00 3.46
265 266 2.094545 GCATCCTTTTGCGACAATCCTT 60.095 45.455 0.00 0.00 32.06 3.36
266 267 1.474077 GCATCCTTTTGCGACAATCCT 59.526 47.619 0.00 0.00 32.06 3.24
267 268 1.469767 GGCATCCTTTTGCGACAATCC 60.470 52.381 0.00 0.00 43.71 3.01
268 269 1.795162 CGGCATCCTTTTGCGACAATC 60.795 52.381 0.00 0.00 43.71 2.67
269 270 0.171007 CGGCATCCTTTTGCGACAAT 59.829 50.000 0.00 0.00 43.71 2.71
270 271 1.578926 CGGCATCCTTTTGCGACAA 59.421 52.632 0.00 0.00 43.71 3.18
271 272 2.976840 GCGGCATCCTTTTGCGACA 61.977 57.895 0.00 0.00 43.71 4.35
272 273 1.366111 TAGCGGCATCCTTTTGCGAC 61.366 55.000 1.45 0.00 43.71 5.19
273 274 1.078778 TAGCGGCATCCTTTTGCGA 60.079 52.632 1.45 0.00 43.71 5.10
274 275 1.353103 CTAGCGGCATCCTTTTGCG 59.647 57.895 1.45 0.00 43.71 4.85
275 276 1.032114 ACCTAGCGGCATCCTTTTGC 61.032 55.000 1.45 0.00 42.01 3.68
276 277 1.017387 GACCTAGCGGCATCCTTTTG 58.983 55.000 1.45 0.00 0.00 2.44
277 278 0.912486 AGACCTAGCGGCATCCTTTT 59.088 50.000 1.45 0.00 0.00 2.27
278 279 0.466124 GAGACCTAGCGGCATCCTTT 59.534 55.000 1.45 0.00 0.00 3.11
279 280 1.403687 GGAGACCTAGCGGCATCCTT 61.404 60.000 1.45 0.00 36.02 3.36
280 281 1.834822 GGAGACCTAGCGGCATCCT 60.835 63.158 1.45 0.00 36.02 3.24
281 282 1.811645 GAGGAGACCTAGCGGCATCC 61.812 65.000 1.45 0.00 38.11 3.51
282 283 1.109920 TGAGGAGACCTAGCGGCATC 61.110 60.000 1.45 0.00 31.76 3.91
283 284 1.075970 TGAGGAGACCTAGCGGCAT 60.076 57.895 1.45 0.00 31.76 4.40
284 285 1.754621 CTGAGGAGACCTAGCGGCA 60.755 63.158 1.45 0.00 31.76 5.69
285 286 1.324005 AACTGAGGAGACCTAGCGGC 61.324 60.000 0.00 0.00 31.76 6.53
286 287 0.457851 CAACTGAGGAGACCTAGCGG 59.542 60.000 0.00 0.00 31.76 5.52
287 288 1.403679 CTCAACTGAGGAGACCTAGCG 59.596 57.143 0.00 0.00 38.48 4.26
288 289 2.452505 ACTCAACTGAGGAGACCTAGC 58.547 52.381 11.31 0.00 46.13 3.42
289 290 5.010933 TGTTACTCAACTGAGGAGACCTAG 58.989 45.833 11.31 0.00 46.13 3.02
290 291 4.994282 TGTTACTCAACTGAGGAGACCTA 58.006 43.478 11.31 0.00 46.13 3.08
291 292 3.845860 TGTTACTCAACTGAGGAGACCT 58.154 45.455 11.31 0.00 46.13 3.85
292 293 4.810191 ATGTTACTCAACTGAGGAGACC 57.190 45.455 11.31 0.00 46.13 3.85
293 294 6.688578 TGTTATGTTACTCAACTGAGGAGAC 58.311 40.000 11.31 6.96 46.13 3.36
294 295 6.911250 TGTTATGTTACTCAACTGAGGAGA 57.089 37.500 11.31 0.00 46.13 3.71
295 296 7.099764 ACATGTTATGTTACTCAACTGAGGAG 58.900 38.462 11.31 0.00 42.84 3.69
296 297 7.004555 ACATGTTATGTTACTCAACTGAGGA 57.995 36.000 11.31 0.00 42.84 3.71
297 298 8.035394 ACTACATGTTATGTTACTCAACTGAGG 58.965 37.037 2.30 0.00 42.84 3.86
298 299 8.988064 ACTACATGTTATGTTACTCAACTGAG 57.012 34.615 2.30 5.15 41.63 3.35
321 322 9.961265 GTGCAAATTACTAGTTTCCTTTTTACT 57.039 29.630 0.00 0.00 0.00 2.24
322 323 9.738832 TGTGCAAATTACTAGTTTCCTTTTTAC 57.261 29.630 0.00 0.00 0.00 2.01
323 324 9.959749 CTGTGCAAATTACTAGTTTCCTTTTTA 57.040 29.630 0.00 0.00 0.00 1.52
324 325 8.474831 ACTGTGCAAATTACTAGTTTCCTTTTT 58.525 29.630 0.00 0.00 0.00 1.94
325 326 8.007405 ACTGTGCAAATTACTAGTTTCCTTTT 57.993 30.769 0.00 0.00 0.00 2.27
326 327 7.502561 AGACTGTGCAAATTACTAGTTTCCTTT 59.497 33.333 0.00 0.00 0.00 3.11
327 328 6.998673 AGACTGTGCAAATTACTAGTTTCCTT 59.001 34.615 0.00 0.00 0.00 3.36
328 329 6.534634 AGACTGTGCAAATTACTAGTTTCCT 58.465 36.000 0.00 0.00 0.00 3.36
329 330 6.803154 AGACTGTGCAAATTACTAGTTTCC 57.197 37.500 0.00 0.00 0.00 3.13
330 331 8.989980 ACTAAGACTGTGCAAATTACTAGTTTC 58.010 33.333 0.00 0.00 0.00 2.78
331 332 8.774586 CACTAAGACTGTGCAAATTACTAGTTT 58.225 33.333 0.00 0.00 0.00 2.66
332 333 7.931948 ACACTAAGACTGTGCAAATTACTAGTT 59.068 33.333 0.00 0.00 38.86 2.24
333 334 7.442656 ACACTAAGACTGTGCAAATTACTAGT 58.557 34.615 0.00 0.00 38.86 2.57
334 335 7.891183 ACACTAAGACTGTGCAAATTACTAG 57.109 36.000 0.00 0.00 38.86 2.57
335 336 9.419297 CTTACACTAAGACTGTGCAAATTACTA 57.581 33.333 0.00 0.00 38.86 1.82
336 337 8.148351 TCTTACACTAAGACTGTGCAAATTACT 58.852 33.333 0.00 0.00 39.73 2.24
337 338 8.306680 TCTTACACTAAGACTGTGCAAATTAC 57.693 34.615 0.00 0.00 39.73 1.89
338 339 9.151471 GATCTTACACTAAGACTGTGCAAATTA 57.849 33.333 0.00 0.00 46.58 1.40
339 340 7.880195 AGATCTTACACTAAGACTGTGCAAATT 59.120 33.333 0.00 0.00 46.58 1.82
340 341 7.390027 AGATCTTACACTAAGACTGTGCAAAT 58.610 34.615 0.00 0.00 46.58 2.32
341 342 6.759272 AGATCTTACACTAAGACTGTGCAAA 58.241 36.000 0.00 0.00 46.58 3.68
342 343 6.015434 TGAGATCTTACACTAAGACTGTGCAA 60.015 38.462 0.00 0.00 46.58 4.08
343 344 5.476945 TGAGATCTTACACTAAGACTGTGCA 59.523 40.000 0.00 0.00 46.58 4.57
344 345 5.955488 TGAGATCTTACACTAAGACTGTGC 58.045 41.667 0.00 0.00 46.58 4.57
360 361 9.684448 CAGTCGTATGTTGTATTAATGAGATCT 57.316 33.333 0.00 0.00 0.00 2.75
361 362 9.678941 TCAGTCGTATGTTGTATTAATGAGATC 57.321 33.333 0.00 0.00 0.00 2.75
362 363 9.464714 GTCAGTCGTATGTTGTATTAATGAGAT 57.535 33.333 0.00 0.00 0.00 2.75
363 364 8.463607 TGTCAGTCGTATGTTGTATTAATGAGA 58.536 33.333 0.00 0.00 0.00 3.27
364 365 8.532341 GTGTCAGTCGTATGTTGTATTAATGAG 58.468 37.037 0.00 0.00 0.00 2.90
365 366 8.030106 TGTGTCAGTCGTATGTTGTATTAATGA 58.970 33.333 0.00 0.00 0.00 2.57
366 367 8.180317 TGTGTCAGTCGTATGTTGTATTAATG 57.820 34.615 0.00 0.00 0.00 1.90
367 368 8.942338 ATGTGTCAGTCGTATGTTGTATTAAT 57.058 30.769 0.00 0.00 0.00 1.40
368 369 9.857957 TTATGTGTCAGTCGTATGTTGTATTAA 57.142 29.630 0.00 0.00 0.00 1.40
370 371 8.942338 ATTATGTGTCAGTCGTATGTTGTATT 57.058 30.769 0.00 0.00 0.00 1.89
371 372 8.942338 AATTATGTGTCAGTCGTATGTTGTAT 57.058 30.769 0.00 0.00 0.00 2.29
372 373 9.857957 TTAATTATGTGTCAGTCGTATGTTGTA 57.142 29.630 0.00 0.00 0.00 2.41
373 374 8.766000 TTAATTATGTGTCAGTCGTATGTTGT 57.234 30.769 0.00 0.00 0.00 3.32
374 375 8.869897 ACTTAATTATGTGTCAGTCGTATGTTG 58.130 33.333 3.35 0.00 0.00 3.33
375 376 8.997621 ACTTAATTATGTGTCAGTCGTATGTT 57.002 30.769 3.35 0.00 0.00 2.71
376 377 8.467598 AGACTTAATTATGTGTCAGTCGTATGT 58.532 33.333 8.62 0.00 36.56 2.29
377 378 8.858003 AGACTTAATTATGTGTCAGTCGTATG 57.142 34.615 8.62 0.00 36.56 2.39
378 379 9.302345 CAAGACTTAATTATGTGTCAGTCGTAT 57.698 33.333 8.62 0.00 36.56 3.06
379 380 7.758076 CCAAGACTTAATTATGTGTCAGTCGTA 59.242 37.037 8.62 0.00 36.56 3.43
380 381 6.590292 CCAAGACTTAATTATGTGTCAGTCGT 59.410 38.462 8.62 2.71 36.56 4.34
381 382 6.590292 ACCAAGACTTAATTATGTGTCAGTCG 59.410 38.462 8.62 0.00 36.56 4.18
382 383 7.201444 CGACCAAGACTTAATTATGTGTCAGTC 60.201 40.741 8.62 12.30 32.41 3.51
383 384 6.590292 CGACCAAGACTTAATTATGTGTCAGT 59.410 38.462 8.62 6.11 32.41 3.41
384 385 6.811665 TCGACCAAGACTTAATTATGTGTCAG 59.188 38.462 8.62 3.40 32.41 3.51
385 386 6.693466 TCGACCAAGACTTAATTATGTGTCA 58.307 36.000 8.62 0.64 32.41 3.58
386 387 7.772332 ATCGACCAAGACTTAATTATGTGTC 57.228 36.000 8.62 8.54 0.00 3.67
387 388 7.822334 TCAATCGACCAAGACTTAATTATGTGT 59.178 33.333 8.62 2.31 0.00 3.72
388 389 8.196802 TCAATCGACCAAGACTTAATTATGTG 57.803 34.615 8.62 0.00 0.00 3.21
389 390 8.258007 TCTCAATCGACCAAGACTTAATTATGT 58.742 33.333 3.79 3.79 0.00 2.29
390 391 8.648557 TCTCAATCGACCAAGACTTAATTATG 57.351 34.615 0.00 0.00 0.00 1.90
391 392 9.838339 AATCTCAATCGACCAAGACTTAATTAT 57.162 29.630 0.00 0.00 0.00 1.28
392 393 9.667107 AAATCTCAATCGACCAAGACTTAATTA 57.333 29.630 0.00 0.00 0.00 1.40
393 394 8.567285 AAATCTCAATCGACCAAGACTTAATT 57.433 30.769 0.00 0.00 0.00 1.40
394 395 9.319143 CTAAATCTCAATCGACCAAGACTTAAT 57.681 33.333 0.00 0.00 0.00 1.40
395 396 7.277981 GCTAAATCTCAATCGACCAAGACTTAA 59.722 37.037 0.00 0.00 0.00 1.85
396 397 6.757010 GCTAAATCTCAATCGACCAAGACTTA 59.243 38.462 0.00 0.00 0.00 2.24
397 398 5.582665 GCTAAATCTCAATCGACCAAGACTT 59.417 40.000 0.00 0.00 0.00 3.01
398 399 5.112686 GCTAAATCTCAATCGACCAAGACT 58.887 41.667 0.00 0.00 0.00 3.24
399 400 4.870426 TGCTAAATCTCAATCGACCAAGAC 59.130 41.667 0.00 0.00 0.00 3.01
400 401 5.084818 TGCTAAATCTCAATCGACCAAGA 57.915 39.130 0.00 0.00 0.00 3.02
401 402 5.220739 CCTTGCTAAATCTCAATCGACCAAG 60.221 44.000 0.00 0.00 0.00 3.61
402 403 4.635765 CCTTGCTAAATCTCAATCGACCAA 59.364 41.667 0.00 0.00 0.00 3.67
403 404 4.191544 CCTTGCTAAATCTCAATCGACCA 58.808 43.478 0.00 0.00 0.00 4.02
404 405 3.002759 GCCTTGCTAAATCTCAATCGACC 59.997 47.826 0.00 0.00 0.00 4.79
405 406 3.623060 TGCCTTGCTAAATCTCAATCGAC 59.377 43.478 0.00 0.00 0.00 4.20
406 407 3.872696 TGCCTTGCTAAATCTCAATCGA 58.127 40.909 0.00 0.00 0.00 3.59
407 408 3.003068 CCTGCCTTGCTAAATCTCAATCG 59.997 47.826 0.00 0.00 0.00 3.34
408 409 3.950395 ACCTGCCTTGCTAAATCTCAATC 59.050 43.478 0.00 0.00 0.00 2.67
409 410 3.973425 ACCTGCCTTGCTAAATCTCAAT 58.027 40.909 0.00 0.00 0.00 2.57
410 411 3.439857 ACCTGCCTTGCTAAATCTCAA 57.560 42.857 0.00 0.00 0.00 3.02
411 412 3.084039 CAACCTGCCTTGCTAAATCTCA 58.916 45.455 0.00 0.00 0.00 3.27
412 413 2.159324 GCAACCTGCCTTGCTAAATCTC 60.159 50.000 4.12 0.00 42.84 2.75
413 414 1.821136 GCAACCTGCCTTGCTAAATCT 59.179 47.619 4.12 0.00 42.84 2.40
414 415 1.545582 TGCAACCTGCCTTGCTAAATC 59.454 47.619 10.99 0.00 45.79 2.17
415 416 1.631405 TGCAACCTGCCTTGCTAAAT 58.369 45.000 10.99 0.00 45.79 1.40
416 417 1.407936 TTGCAACCTGCCTTGCTAAA 58.592 45.000 0.00 0.00 45.79 1.85
417 418 1.068434 GTTTGCAACCTGCCTTGCTAA 59.932 47.619 0.00 7.66 45.79 3.09
418 419 0.673437 GTTTGCAACCTGCCTTGCTA 59.327 50.000 0.00 2.64 45.79 3.49
419 420 1.329171 TGTTTGCAACCTGCCTTGCT 61.329 50.000 0.00 0.00 45.79 3.91
420 421 0.249996 ATGTTTGCAACCTGCCTTGC 60.250 50.000 0.00 4.35 44.23 4.01
421 422 3.598019 ATATGTTTGCAACCTGCCTTG 57.402 42.857 0.00 0.00 44.23 3.61
422 423 3.577848 TCAATATGTTTGCAACCTGCCTT 59.422 39.130 0.00 0.00 44.23 4.35
423 424 3.056607 GTCAATATGTTTGCAACCTGCCT 60.057 43.478 0.00 0.00 44.23 4.75
424 425 3.056607 AGTCAATATGTTTGCAACCTGCC 60.057 43.478 0.00 0.00 44.23 4.85
425 426 4.178545 AGTCAATATGTTTGCAACCTGC 57.821 40.909 0.00 0.00 45.29 4.85
426 427 7.765307 AGATTAGTCAATATGTTTGCAACCTG 58.235 34.615 0.00 0.00 0.00 4.00
427 428 7.067494 GGAGATTAGTCAATATGTTTGCAACCT 59.933 37.037 0.00 0.00 0.00 3.50
428 429 7.067494 AGGAGATTAGTCAATATGTTTGCAACC 59.933 37.037 0.00 0.00 0.00 3.77
429 430 7.989826 AGGAGATTAGTCAATATGTTTGCAAC 58.010 34.615 0.00 0.00 0.00 4.17
430 431 9.109393 GTAGGAGATTAGTCAATATGTTTGCAA 57.891 33.333 0.00 0.00 0.00 4.08
431 432 7.715249 GGTAGGAGATTAGTCAATATGTTTGCA 59.285 37.037 0.00 0.00 0.00 4.08
432 433 7.173390 GGGTAGGAGATTAGTCAATATGTTTGC 59.827 40.741 0.00 0.00 0.00 3.68
433 434 8.210946 TGGGTAGGAGATTAGTCAATATGTTTG 58.789 37.037 0.00 0.00 0.00 2.93
434 435 8.331931 TGGGTAGGAGATTAGTCAATATGTTT 57.668 34.615 0.00 0.00 0.00 2.83
435 436 7.569111 ACTGGGTAGGAGATTAGTCAATATGTT 59.431 37.037 0.00 0.00 0.00 2.71
436 437 7.076446 ACTGGGTAGGAGATTAGTCAATATGT 58.924 38.462 0.00 0.00 0.00 2.29
437 438 7.546250 ACTGGGTAGGAGATTAGTCAATATG 57.454 40.000 0.00 0.00 0.00 1.78
438 439 8.568617 AAACTGGGTAGGAGATTAGTCAATAT 57.431 34.615 0.00 0.00 0.00 1.28
439 440 7.989947 AAACTGGGTAGGAGATTAGTCAATA 57.010 36.000 0.00 0.00 0.00 1.90
440 441 6.893020 AAACTGGGTAGGAGATTAGTCAAT 57.107 37.500 0.00 0.00 0.00 2.57
441 442 6.271391 TGAAAACTGGGTAGGAGATTAGTCAA 59.729 38.462 0.00 0.00 0.00 3.18
442 443 5.783360 TGAAAACTGGGTAGGAGATTAGTCA 59.217 40.000 0.00 0.00 0.00 3.41
443 444 6.295719 TGAAAACTGGGTAGGAGATTAGTC 57.704 41.667 0.00 0.00 0.00 2.59
444 445 6.443849 TCATGAAAACTGGGTAGGAGATTAGT 59.556 38.462 0.00 0.00 0.00 2.24
445 446 6.763610 GTCATGAAAACTGGGTAGGAGATTAG 59.236 42.308 0.00 0.00 0.00 1.73
446 447 6.352737 GGTCATGAAAACTGGGTAGGAGATTA 60.353 42.308 0.00 0.00 0.00 1.75
447 448 5.501156 GTCATGAAAACTGGGTAGGAGATT 58.499 41.667 0.00 0.00 0.00 2.40
448 449 4.080299 GGTCATGAAAACTGGGTAGGAGAT 60.080 45.833 0.00 0.00 0.00 2.75
449 450 3.263425 GGTCATGAAAACTGGGTAGGAGA 59.737 47.826 0.00 0.00 0.00 3.71
450 451 3.009033 TGGTCATGAAAACTGGGTAGGAG 59.991 47.826 0.00 0.00 0.00 3.69
451 452 2.983192 TGGTCATGAAAACTGGGTAGGA 59.017 45.455 0.00 0.00 0.00 2.94
452 453 3.433306 TGGTCATGAAAACTGGGTAGG 57.567 47.619 0.00 0.00 0.00 3.18
453 454 4.156556 CACATGGTCATGAAAACTGGGTAG 59.843 45.833 16.77 0.00 41.20 3.18
454 455 4.078537 CACATGGTCATGAAAACTGGGTA 58.921 43.478 16.77 0.00 41.20 3.69
455 456 2.892852 CACATGGTCATGAAAACTGGGT 59.107 45.455 16.77 0.00 41.20 4.51
456 457 2.892852 ACACATGGTCATGAAAACTGGG 59.107 45.455 16.77 0.00 41.20 4.45
457 458 4.164822 GACACATGGTCATGAAAACTGG 57.835 45.455 16.77 0.00 46.19 4.00
469 470 2.233271 CTGGAAGCAAAGACACATGGT 58.767 47.619 0.00 0.00 0.00 3.55
470 471 1.542915 CCTGGAAGCAAAGACACATGG 59.457 52.381 0.00 0.00 0.00 3.66
471 472 1.068055 GCCTGGAAGCAAAGACACATG 60.068 52.381 0.00 0.00 0.00 3.21
472 473 1.251251 GCCTGGAAGCAAAGACACAT 58.749 50.000 0.00 0.00 0.00 3.21
473 474 0.106769 TGCCTGGAAGCAAAGACACA 60.107 50.000 0.00 0.00 40.56 3.72
474 475 2.719376 TGCCTGGAAGCAAAGACAC 58.281 52.632 0.00 0.00 40.56 3.67
482 483 4.734695 GCAAAGTATAACATGCCTGGAAGC 60.735 45.833 0.00 0.00 32.73 3.86
483 484 4.641989 AGCAAAGTATAACATGCCTGGAAG 59.358 41.667 0.00 0.00 39.59 3.46
484 485 4.599041 AGCAAAGTATAACATGCCTGGAA 58.401 39.130 0.00 0.00 39.59 3.53
485 486 4.235079 AGCAAAGTATAACATGCCTGGA 57.765 40.909 0.00 0.00 39.59 3.86
486 487 6.639632 AATAGCAAAGTATAACATGCCTGG 57.360 37.500 0.00 0.00 39.59 4.45
487 488 8.499162 GTCTAATAGCAAAGTATAACATGCCTG 58.501 37.037 0.00 0.00 39.59 4.85
488 489 8.210946 TGTCTAATAGCAAAGTATAACATGCCT 58.789 33.333 0.00 0.00 39.59 4.75
489 490 8.378172 TGTCTAATAGCAAAGTATAACATGCC 57.622 34.615 0.00 0.00 39.59 4.40
499 500 8.847196 TCTACACGATATGTCTAATAGCAAAGT 58.153 33.333 0.00 0.00 42.09 2.66
500 501 9.678941 TTCTACACGATATGTCTAATAGCAAAG 57.321 33.333 0.00 0.00 42.09 2.77
510 511 8.566260 GGTGTTACTATTCTACACGATATGTCT 58.434 37.037 0.00 0.00 42.09 3.41
511 512 8.347771 TGGTGTTACTATTCTACACGATATGTC 58.652 37.037 0.00 0.00 42.09 3.06
512 513 8.229253 TGGTGTTACTATTCTACACGATATGT 57.771 34.615 0.00 0.00 46.06 2.29
513 514 9.524106 TTTGGTGTTACTATTCTACACGATATG 57.476 33.333 0.00 0.00 42.29 1.78
516 517 9.095065 GAATTTGGTGTTACTATTCTACACGAT 57.905 33.333 0.00 0.00 42.29 3.73
517 518 8.308931 AGAATTTGGTGTTACTATTCTACACGA 58.691 33.333 0.00 0.00 42.29 4.35
518 519 8.475331 AGAATTTGGTGTTACTATTCTACACG 57.525 34.615 0.00 0.00 42.29 4.49
524 525 9.626045 CCTTTCAAGAATTTGGTGTTACTATTC 57.374 33.333 0.00 0.00 34.97 1.75
525 526 8.088365 GCCTTTCAAGAATTTGGTGTTACTATT 58.912 33.333 0.00 0.00 34.97 1.73
526 527 7.232534 TGCCTTTCAAGAATTTGGTGTTACTAT 59.767 33.333 0.00 0.00 34.97 2.12
527 528 6.547880 TGCCTTTCAAGAATTTGGTGTTACTA 59.452 34.615 0.00 0.00 34.97 1.82
528 529 5.362430 TGCCTTTCAAGAATTTGGTGTTACT 59.638 36.000 0.00 0.00 34.97 2.24
529 530 5.596845 TGCCTTTCAAGAATTTGGTGTTAC 58.403 37.500 0.00 0.00 34.97 2.50
530 531 5.860941 TGCCTTTCAAGAATTTGGTGTTA 57.139 34.783 0.00 0.00 34.97 2.41
531 532 4.751767 TGCCTTTCAAGAATTTGGTGTT 57.248 36.364 0.00 0.00 34.97 3.32
532 533 4.961438 ATGCCTTTCAAGAATTTGGTGT 57.039 36.364 0.00 0.00 34.97 4.16
533 534 6.705381 TGTTAATGCCTTTCAAGAATTTGGTG 59.295 34.615 0.00 0.00 34.97 4.17
534 535 6.705825 GTGTTAATGCCTTTCAAGAATTTGGT 59.294 34.615 0.00 0.00 34.97 3.67
535 536 6.705381 TGTGTTAATGCCTTTCAAGAATTTGG 59.295 34.615 0.00 0.00 34.97 3.28
536 537 7.712264 TGTGTTAATGCCTTTCAAGAATTTG 57.288 32.000 0.00 0.00 35.57 2.32
537 538 7.388500 CCATGTGTTAATGCCTTTCAAGAATTT 59.612 33.333 0.00 0.00 0.00 1.82
538 539 6.875195 CCATGTGTTAATGCCTTTCAAGAATT 59.125 34.615 0.00 0.00 0.00 2.17
539 540 6.400568 CCATGTGTTAATGCCTTTCAAGAAT 58.599 36.000 0.00 0.00 0.00 2.40
540 541 5.279406 CCCATGTGTTAATGCCTTTCAAGAA 60.279 40.000 0.00 0.00 0.00 2.52
541 542 4.220382 CCCATGTGTTAATGCCTTTCAAGA 59.780 41.667 0.00 0.00 0.00 3.02
542 543 4.497300 CCCATGTGTTAATGCCTTTCAAG 58.503 43.478 0.00 0.00 0.00 3.02
543 544 3.306641 GCCCATGTGTTAATGCCTTTCAA 60.307 43.478 0.00 0.00 0.00 2.69
544 545 2.233431 GCCCATGTGTTAATGCCTTTCA 59.767 45.455 0.00 0.00 0.00 2.69
545 546 2.418609 GGCCCATGTGTTAATGCCTTTC 60.419 50.000 0.00 0.00 35.99 2.62
546 547 1.554617 GGCCCATGTGTTAATGCCTTT 59.445 47.619 0.00 0.00 35.99 3.11
547 548 1.194218 GGCCCATGTGTTAATGCCTT 58.806 50.000 0.00 0.00 35.99 4.35
548 549 0.040942 TGGCCCATGTGTTAATGCCT 59.959 50.000 0.00 0.00 39.60 4.75
549 550 0.901124 TTGGCCCATGTGTTAATGCC 59.099 50.000 0.00 0.00 39.33 4.40
550 551 2.985957 ATTGGCCCATGTGTTAATGC 57.014 45.000 0.00 0.00 0.00 3.56
551 552 3.638160 AGCTATTGGCCCATGTGTTAATG 59.362 43.478 0.00 0.00 43.05 1.90
552 553 3.891366 GAGCTATTGGCCCATGTGTTAAT 59.109 43.478 0.00 0.00 43.05 1.40
553 554 3.287222 GAGCTATTGGCCCATGTGTTAA 58.713 45.455 0.00 0.00 43.05 2.01
559 560 0.184451 ACAGGAGCTATTGGCCCATG 59.816 55.000 0.00 0.00 43.05 3.66
611 612 1.263217 GCCATTCACTCGAACAACGTT 59.737 47.619 0.00 0.00 43.13 3.99
1160 1161 1.697432 CCAGATCCACCGCCCTAATTA 59.303 52.381 0.00 0.00 0.00 1.40
1222 1223 3.073798 TGCCCACATTTCTTCAGAACCTA 59.926 43.478 0.00 0.00 33.13 3.08
2078 2081 2.921972 GCCCCATGCAAACCCACA 60.922 61.111 0.00 0.00 40.77 4.17
2454 2457 4.047059 GTGAAGGACGACGCCCGA 62.047 66.667 4.79 0.00 41.76 5.14
2461 2464 1.305046 GGGGAGGAGTGAAGGACGA 60.305 63.158 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.