Multiple sequence alignment - TraesCS6A01G365500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G365500 chr6A 100.000 2775 0 0 1 2775 593731776 593734550 0.000000e+00 5125.0
1 TraesCS6A01G365500 chr6A 87.540 618 38 14 1028 1634 593562365 593561776 0.000000e+00 678.0
2 TraesCS6A01G365500 chr6A 82.507 686 71 26 1655 2314 593561726 593561064 8.680000e-155 556.0
3 TraesCS6A01G365500 chr6A 82.772 505 66 12 1083 1587 593574295 593574778 5.490000e-117 431.0
4 TraesCS6A01G365500 chr6A 82.227 467 62 9 1074 1540 593682462 593682907 1.560000e-102 383.0
5 TraesCS6A01G365500 chr6A 79.835 486 45 27 1079 1533 593792305 593792768 3.470000e-79 305.0
6 TraesCS6A01G365500 chr6A 100.000 31 0 0 271 301 593776670 593776700 1.070000e-04 58.4
7 TraesCS6A01G365500 chr6B 82.824 1572 168 48 787 2311 676036149 676037665 0.000000e+00 1314.0
8 TraesCS6A01G365500 chr6B 81.591 1320 148 44 795 2068 676047083 676048353 0.000000e+00 1003.0
9 TraesCS6A01G365500 chr6B 81.705 880 86 29 787 1654 675702797 675701981 0.000000e+00 664.0
10 TraesCS6A01G365500 chr6B 83.372 433 34 9 1769 2172 675701847 675701424 1.570000e-97 366.0
11 TraesCS6A01G365500 chr6B 80.196 510 60 21 1051 1533 676136354 676136849 7.360000e-91 344.0
12 TraesCS6A01G365500 chr6B 76.716 743 78 39 842 1533 675568712 675568014 2.670000e-85 326.0
13 TraesCS6A01G365500 chr6B 87.544 281 25 6 2461 2733 676037843 676038121 1.600000e-82 316.0
14 TraesCS6A01G365500 chr6B 88.372 258 26 2 257 513 676035898 676036152 9.650000e-80 307.0
15 TraesCS6A01G365500 chr6B 88.618 246 19 6 2063 2300 675672392 675672148 9.720000e-75 291.0
16 TraesCS6A01G365500 chr6B 82.535 355 21 20 2446 2775 676048655 676048993 9.790000e-70 274.0
17 TraesCS6A01G365500 chr6B 87.866 239 19 3 2540 2775 675701066 675700835 3.520000e-69 272.0
18 TraesCS6A01G365500 chr6B 87.083 240 13 6 2537 2775 675667364 675667142 3.550000e-64 255.0
19 TraesCS6A01G365500 chr6B 93.151 146 6 1 2 147 675985780 675985921 7.790000e-51 211.0
20 TraesCS6A01G365500 chr6B 92.135 89 5 2 2446 2533 675701191 675701104 1.040000e-24 124.0
21 TraesCS6A01G365500 chr6B 93.939 66 4 0 1683 1748 675701908 675701843 1.760000e-17 100.0
22 TraesCS6A01G365500 chr6B 84.158 101 7 2 2586 2677 676125414 676125514 3.810000e-14 89.8
23 TraesCS6A01G365500 chr6B 97.059 34 1 0 1553 1586 677128960 677128927 1.070000e-04 58.4
24 TraesCS6A01G365500 chr6B 100.000 28 0 0 2410 2437 675701247 675701220 5.000000e-03 52.8
25 TraesCS6A01G365500 chr6D 89.512 820 52 16 795 1589 446882029 446882839 0.000000e+00 1007.0
26 TraesCS6A01G365500 chr6D 83.244 931 65 25 1683 2558 446882944 446883838 0.000000e+00 771.0
27 TraesCS6A01G365500 chr6D 85.091 711 76 19 939 1631 446728195 446727497 0.000000e+00 699.0
28 TraesCS6A01G365500 chr6D 81.435 711 68 25 1655 2320 446727443 446726752 8.810000e-145 523.0
29 TraesCS6A01G365500 chr6D 81.509 530 71 11 1011 1540 446814736 446815238 7.150000e-111 411.0
30 TraesCS6A01G365500 chr6D 80.417 480 50 16 1079 1533 446948451 446948911 2.670000e-85 326.0
31 TraesCS6A01G365500 chr6D 87.013 154 16 2 257 406 446881304 446881457 1.320000e-38 171.0
32 TraesCS6A01G365500 chr6D 88.435 147 10 1 2629 2775 446883839 446883978 1.320000e-38 171.0
33 TraesCS6A01G365500 chr6D 83.721 129 14 2 2530 2651 446726512 446726384 6.280000e-22 115.0
34 TraesCS6A01G365500 chr6D 90.476 42 3 1 274 314 447510999 447510958 1.000000e-03 54.7
35 TraesCS6A01G365500 chrUn 96.454 282 9 1 510 791 36437107 36437387 5.410000e-127 464.0
36 TraesCS6A01G365500 chr7B 96.113 283 10 1 507 789 589400468 589400749 7.000000e-126 460.0
37 TraesCS6A01G365500 chr7B 95.804 286 11 1 514 798 636356916 636357201 7.000000e-126 460.0
38 TraesCS6A01G365500 chr7B 95.455 286 12 1 514 798 33031329 33031044 3.260000e-124 455.0
39 TraesCS6A01G365500 chr7B 95.455 286 12 1 514 798 215213173 215212888 3.260000e-124 455.0
40 TraesCS6A01G365500 chr7B 95.455 286 12 1 514 798 520353509 520353224 3.260000e-124 455.0
41 TraesCS6A01G365500 chr7B 95.455 286 12 1 514 798 590591492 590591207 3.260000e-124 455.0
42 TraesCS6A01G365500 chr4B 95.804 286 11 1 514 798 418491022 418491307 7.000000e-126 460.0
43 TraesCS6A01G365500 chr2B 95.455 286 12 1 514 798 440793738 440794023 3.260000e-124 455.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G365500 chr6A 593731776 593734550 2774 False 5125.000000 5125 100.000000 1 2775 1 chr6A.!!$F3 2774
1 TraesCS6A01G365500 chr6A 593561064 593562365 1301 True 617.000000 678 85.023500 1028 2314 2 chr6A.!!$R1 1286
2 TraesCS6A01G365500 chr6B 676035898 676038121 2223 False 645.666667 1314 86.246667 257 2733 3 chr6B.!!$F4 2476
3 TraesCS6A01G365500 chr6B 676047083 676048993 1910 False 638.500000 1003 82.063000 795 2775 2 chr6B.!!$F5 1980
4 TraesCS6A01G365500 chr6B 675568014 675568712 698 True 326.000000 326 76.716000 842 1533 1 chr6B.!!$R1 691
5 TraesCS6A01G365500 chr6B 675700835 675702797 1962 True 263.133333 664 89.836167 787 2775 6 chr6B.!!$R5 1988
6 TraesCS6A01G365500 chr6D 446881304 446883978 2674 False 530.000000 1007 87.051000 257 2775 4 chr6D.!!$F3 2518
7 TraesCS6A01G365500 chr6D 446726384 446728195 1811 True 445.666667 699 83.415667 939 2651 3 chr6D.!!$R2 1712
8 TraesCS6A01G365500 chr6D 446814736 446815238 502 False 411.000000 411 81.509000 1011 1540 1 chr6D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 1251 0.114364 TCCCACTGTGCCTAGTCTGA 59.886 55.0 1.29 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2613 3614 0.03779 GGTGACTCTGCACTGACTCC 60.038 60.0 0.0 0.0 38.78 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.641577 GCACAAGATACGTCCCTCAC 58.358 55.000 0.00 0.00 0.00 3.51
20 21 1.204941 GCACAAGATACGTCCCTCACT 59.795 52.381 0.00 0.00 0.00 3.41
21 22 2.881074 CACAAGATACGTCCCTCACTG 58.119 52.381 0.00 0.00 0.00 3.66
22 23 1.204941 ACAAGATACGTCCCTCACTGC 59.795 52.381 0.00 0.00 0.00 4.40
23 24 0.456221 AAGATACGTCCCTCACTGCG 59.544 55.000 0.00 0.00 0.00 5.18
24 25 0.680280 AGATACGTCCCTCACTGCGT 60.680 55.000 0.00 0.00 40.76 5.24
25 26 0.525668 GATACGTCCCTCACTGCGTG 60.526 60.000 0.00 2.79 38.10 5.34
26 27 1.248785 ATACGTCCCTCACTGCGTGT 61.249 55.000 0.00 0.00 38.10 4.49
35 36 3.659334 ACTGCGTGTGAATGGCTG 58.341 55.556 0.00 0.00 0.00 4.85
36 37 1.968017 ACTGCGTGTGAATGGCTGG 60.968 57.895 0.00 0.00 0.00 4.85
37 38 2.672651 TGCGTGTGAATGGCTGGG 60.673 61.111 0.00 0.00 0.00 4.45
38 39 2.672996 GCGTGTGAATGGCTGGGT 60.673 61.111 0.00 0.00 0.00 4.51
39 40 2.268076 GCGTGTGAATGGCTGGGTT 61.268 57.895 0.00 0.00 0.00 4.11
40 41 0.958382 GCGTGTGAATGGCTGGGTTA 60.958 55.000 0.00 0.00 0.00 2.85
41 42 1.750193 CGTGTGAATGGCTGGGTTAT 58.250 50.000 0.00 0.00 0.00 1.89
42 43 1.401552 CGTGTGAATGGCTGGGTTATG 59.598 52.381 0.00 0.00 0.00 1.90
43 44 1.134946 GTGTGAATGGCTGGGTTATGC 59.865 52.381 0.00 0.00 0.00 3.14
53 54 3.497879 GGTTATGCCCACTGACGC 58.502 61.111 0.00 0.00 0.00 5.19
54 55 1.376683 GGTTATGCCCACTGACGCA 60.377 57.895 0.00 0.00 39.79 5.24
55 56 1.644786 GGTTATGCCCACTGACGCAC 61.645 60.000 0.00 0.00 37.93 5.34
56 57 0.673644 GTTATGCCCACTGACGCACT 60.674 55.000 0.00 0.00 37.93 4.40
57 58 0.673333 TTATGCCCACTGACGCACTG 60.673 55.000 0.00 0.00 37.93 3.66
58 59 1.540435 TATGCCCACTGACGCACTGA 61.540 55.000 0.00 0.00 37.93 3.41
59 60 2.046892 GCCCACTGACGCACTGAT 60.047 61.111 0.00 0.00 0.00 2.90
60 61 2.103042 GCCCACTGACGCACTGATC 61.103 63.158 0.00 0.00 0.00 2.92
61 62 1.293179 CCCACTGACGCACTGATCA 59.707 57.895 0.00 0.00 0.00 2.92
62 63 1.016130 CCCACTGACGCACTGATCAC 61.016 60.000 0.00 0.00 0.00 3.06
63 64 0.319813 CCACTGACGCACTGATCACA 60.320 55.000 0.00 0.00 0.00 3.58
86 87 4.392619 TGTTTAACACAGCGGAAATACG 57.607 40.909 0.00 0.00 0.00 3.06
94 95 3.775314 CGGAAATACGCGTCTGCA 58.225 55.556 18.63 0.00 42.97 4.41
95 96 1.343821 CGGAAATACGCGTCTGCAC 59.656 57.895 18.63 3.79 42.97 4.57
110 111 3.500222 CACGCATGCATGGCTGTA 58.500 55.556 27.34 0.00 0.00 2.74
111 112 1.801983 CACGCATGCATGGCTGTAA 59.198 52.632 27.34 0.00 0.00 2.41
112 113 0.382873 CACGCATGCATGGCTGTAAT 59.617 50.000 27.34 0.00 0.00 1.89
113 114 1.105457 ACGCATGCATGGCTGTAATT 58.895 45.000 27.34 0.00 0.00 1.40
114 115 2.033174 CACGCATGCATGGCTGTAATTA 59.967 45.455 27.34 0.00 0.00 1.40
115 116 2.687425 ACGCATGCATGGCTGTAATTAA 59.313 40.909 27.34 0.00 0.00 1.40
116 117 3.243168 ACGCATGCATGGCTGTAATTAAG 60.243 43.478 27.34 6.98 0.00 1.85
117 118 3.645884 GCATGCATGGCTGTAATTAAGG 58.354 45.455 27.34 0.00 0.00 2.69
118 119 3.318839 GCATGCATGGCTGTAATTAAGGA 59.681 43.478 27.34 0.00 0.00 3.36
119 120 4.202141 GCATGCATGGCTGTAATTAAGGAA 60.202 41.667 27.34 0.00 0.00 3.36
120 121 5.526115 CATGCATGGCTGTAATTAAGGAAG 58.474 41.667 19.40 0.00 0.00 3.46
121 122 3.381272 TGCATGGCTGTAATTAAGGAAGC 59.619 43.478 0.00 0.00 0.00 3.86
127 128 5.736486 GCTGTAATTAAGGAAGCCTGTAC 57.264 43.478 0.00 0.00 32.13 2.90
128 129 5.429130 GCTGTAATTAAGGAAGCCTGTACT 58.571 41.667 0.00 0.00 32.13 2.73
129 130 6.579865 GCTGTAATTAAGGAAGCCTGTACTA 58.420 40.000 0.00 0.00 32.13 1.82
130 131 7.046033 GCTGTAATTAAGGAAGCCTGTACTAA 58.954 38.462 0.00 0.00 32.13 2.24
131 132 7.715686 GCTGTAATTAAGGAAGCCTGTACTAAT 59.284 37.037 0.00 0.00 32.13 1.73
132 133 9.614792 CTGTAATTAAGGAAGCCTGTACTAATT 57.385 33.333 0.00 0.00 32.13 1.40
139 140 8.738645 AAGGAAGCCTGTACTAATTAAATCTG 57.261 34.615 0.00 0.00 32.13 2.90
140 141 6.768381 AGGAAGCCTGTACTAATTAAATCTGC 59.232 38.462 0.00 0.00 29.57 4.26
141 142 6.292919 GGAAGCCTGTACTAATTAAATCTGCG 60.293 42.308 0.00 0.00 0.00 5.18
142 143 5.914033 AGCCTGTACTAATTAAATCTGCGA 58.086 37.500 0.00 0.00 0.00 5.10
143 144 5.986135 AGCCTGTACTAATTAAATCTGCGAG 59.014 40.000 0.00 0.00 0.00 5.03
144 145 5.177696 GCCTGTACTAATTAAATCTGCGAGG 59.822 44.000 0.00 0.00 0.00 4.63
145 146 6.513180 CCTGTACTAATTAAATCTGCGAGGA 58.487 40.000 0.00 0.00 0.00 3.71
146 147 7.155328 CCTGTACTAATTAAATCTGCGAGGAT 58.845 38.462 0.00 0.00 0.00 3.24
147 148 7.657761 CCTGTACTAATTAAATCTGCGAGGATT 59.342 37.037 0.00 0.00 37.51 3.01
148 149 9.692749 CTGTACTAATTAAATCTGCGAGGATTA 57.307 33.333 0.00 0.00 35.19 1.75
149 150 9.692749 TGTACTAATTAAATCTGCGAGGATTAG 57.307 33.333 0.00 0.00 35.19 1.73
150 151 7.659652 ACTAATTAAATCTGCGAGGATTAGC 57.340 36.000 4.23 0.00 35.19 3.09
151 152 7.445945 ACTAATTAAATCTGCGAGGATTAGCT 58.554 34.615 0.00 0.00 35.19 3.32
152 153 8.585881 ACTAATTAAATCTGCGAGGATTAGCTA 58.414 33.333 0.00 0.00 35.19 3.32
153 154 9.424319 CTAATTAAATCTGCGAGGATTAGCTAA 57.576 33.333 8.99 8.99 35.19 3.09
154 155 7.897575 ATTAAATCTGCGAGGATTAGCTAAG 57.102 36.000 12.54 0.00 35.19 2.18
155 156 3.951775 ATCTGCGAGGATTAGCTAAGG 57.048 47.619 12.54 0.30 0.00 2.69
156 157 2.667470 TCTGCGAGGATTAGCTAAGGT 58.333 47.619 12.54 0.00 0.00 3.50
157 158 3.031736 TCTGCGAGGATTAGCTAAGGTT 58.968 45.455 12.54 0.00 0.00 3.50
158 159 3.451178 TCTGCGAGGATTAGCTAAGGTTT 59.549 43.478 12.54 0.00 0.00 3.27
159 160 4.647853 TCTGCGAGGATTAGCTAAGGTTTA 59.352 41.667 12.54 0.00 0.00 2.01
160 161 5.128171 TCTGCGAGGATTAGCTAAGGTTTAA 59.872 40.000 12.54 0.00 0.00 1.52
161 162 5.114081 TGCGAGGATTAGCTAAGGTTTAAC 58.886 41.667 12.54 0.00 0.00 2.01
162 163 4.510711 GCGAGGATTAGCTAAGGTTTAACC 59.489 45.833 12.54 5.91 38.99 2.85
163 164 4.743644 CGAGGATTAGCTAAGGTTTAACCG 59.256 45.833 12.54 3.94 44.90 4.44
164 165 5.450965 CGAGGATTAGCTAAGGTTTAACCGA 60.451 44.000 12.54 0.08 44.90 4.69
165 166 5.668471 AGGATTAGCTAAGGTTTAACCGAC 58.332 41.667 12.54 0.00 44.90 4.79
166 167 4.505556 GGATTAGCTAAGGTTTAACCGACG 59.494 45.833 12.54 2.19 44.90 5.12
167 168 1.718396 AGCTAAGGTTTAACCGACGC 58.282 50.000 8.63 11.65 44.90 5.19
168 169 0.367887 GCTAAGGTTTAACCGACGCG 59.632 55.000 3.53 3.53 44.90 6.01
179 180 2.579787 CGACGCGGAGTAGCAAGG 60.580 66.667 12.47 0.00 36.85 3.61
180 181 2.882876 GACGCGGAGTAGCAAGGA 59.117 61.111 12.47 0.00 36.85 3.36
181 182 1.516603 GACGCGGAGTAGCAAGGAC 60.517 63.158 12.47 0.00 36.85 3.85
182 183 2.579787 CGCGGAGTAGCAAGGACG 60.580 66.667 0.00 0.00 36.85 4.79
183 184 2.202756 GCGGAGTAGCAAGGACGG 60.203 66.667 0.00 0.00 37.05 4.79
184 185 2.202756 CGGAGTAGCAAGGACGGC 60.203 66.667 0.00 0.00 0.00 5.68
185 186 2.187163 GGAGTAGCAAGGACGGCC 59.813 66.667 0.00 0.00 0.00 6.13
187 188 1.153549 GAGTAGCAAGGACGGCCTG 60.154 63.158 12.91 6.46 46.28 4.85
188 189 1.605058 GAGTAGCAAGGACGGCCTGA 61.605 60.000 12.91 0.00 46.28 3.86
189 190 0.978146 AGTAGCAAGGACGGCCTGAT 60.978 55.000 12.91 6.67 46.28 2.90
190 191 0.811616 GTAGCAAGGACGGCCTGATG 60.812 60.000 12.91 7.89 46.28 3.07
191 192 0.975556 TAGCAAGGACGGCCTGATGA 60.976 55.000 12.91 0.00 46.28 2.92
192 193 1.153086 GCAAGGACGGCCTGATGAT 60.153 57.895 12.91 0.00 46.28 2.45
193 194 1.442526 GCAAGGACGGCCTGATGATG 61.443 60.000 12.91 5.93 46.28 3.07
194 195 0.178767 CAAGGACGGCCTGATGATGA 59.821 55.000 12.91 0.00 46.28 2.92
195 196 0.467384 AAGGACGGCCTGATGATGAG 59.533 55.000 12.91 0.00 46.28 2.90
196 197 0.397675 AGGACGGCCTGATGATGAGA 60.398 55.000 10.54 0.00 44.90 3.27
197 198 0.249657 GGACGGCCTGATGATGAGAC 60.250 60.000 0.00 0.00 0.00 3.36
198 199 0.596083 GACGGCCTGATGATGAGACG 60.596 60.000 0.00 0.00 0.00 4.18
199 200 1.300465 CGGCCTGATGATGAGACGG 60.300 63.158 0.00 0.00 0.00 4.79
200 201 1.826024 GGCCTGATGATGAGACGGT 59.174 57.895 0.00 0.00 0.00 4.83
201 202 0.249657 GGCCTGATGATGAGACGGTC 60.250 60.000 0.00 0.00 0.00 4.79
202 203 0.461548 GCCTGATGATGAGACGGTCA 59.538 55.000 11.27 0.00 40.38 4.02
203 204 1.804372 GCCTGATGATGAGACGGTCAC 60.804 57.143 11.27 4.63 38.28 3.67
205 206 1.401905 CTGATGATGAGACGGTCACGA 59.598 52.381 11.27 0.00 44.60 4.35
206 207 2.024414 TGATGATGAGACGGTCACGAT 58.976 47.619 11.27 0.00 44.60 3.73
207 208 2.033424 TGATGATGAGACGGTCACGATC 59.967 50.000 11.27 8.65 44.60 3.69
208 209 1.751437 TGATGAGACGGTCACGATCT 58.249 50.000 11.27 0.00 44.60 2.75
209 210 2.092323 TGATGAGACGGTCACGATCTT 58.908 47.619 11.27 0.00 44.60 2.40
210 211 2.492088 TGATGAGACGGTCACGATCTTT 59.508 45.455 11.27 0.00 44.60 2.52
211 212 3.692593 TGATGAGACGGTCACGATCTTTA 59.307 43.478 11.27 0.00 44.60 1.85
212 213 3.759527 TGAGACGGTCACGATCTTTAG 57.240 47.619 11.27 0.00 44.60 1.85
213 214 3.340928 TGAGACGGTCACGATCTTTAGA 58.659 45.455 11.27 0.00 44.60 2.10
214 215 3.126514 TGAGACGGTCACGATCTTTAGAC 59.873 47.826 11.27 0.00 44.60 2.59
215 216 3.079578 AGACGGTCACGATCTTTAGACA 58.920 45.455 11.27 0.00 44.60 3.41
216 217 3.119919 AGACGGTCACGATCTTTAGACAC 60.120 47.826 11.27 0.00 44.60 3.67
217 218 2.094854 ACGGTCACGATCTTTAGACACC 60.095 50.000 0.00 0.00 44.60 4.16
218 219 2.734492 CGGTCACGATCTTTAGACACCC 60.734 54.545 0.00 0.00 44.60 4.61
219 220 2.527100 GTCACGATCTTTAGACACCCG 58.473 52.381 0.00 0.00 0.00 5.28
220 221 1.475280 TCACGATCTTTAGACACCCGG 59.525 52.381 0.00 0.00 0.00 5.73
221 222 0.175073 ACGATCTTTAGACACCCGGC 59.825 55.000 0.00 0.00 0.00 6.13
222 223 0.529992 CGATCTTTAGACACCCGGCC 60.530 60.000 0.00 0.00 0.00 6.13
223 224 0.529992 GATCTTTAGACACCCGGCCG 60.530 60.000 21.04 21.04 0.00 6.13
224 225 1.262640 ATCTTTAGACACCCGGCCGT 61.263 55.000 26.12 4.65 0.00 5.68
225 226 1.004200 CTTTAGACACCCGGCCGTT 60.004 57.895 26.12 7.69 0.00 4.44
226 227 1.004679 TTTAGACACCCGGCCGTTC 60.005 57.895 26.12 14.39 0.00 3.95
227 228 1.756408 TTTAGACACCCGGCCGTTCA 61.756 55.000 26.12 0.00 0.00 3.18
228 229 2.438951 TTAGACACCCGGCCGTTCAC 62.439 60.000 26.12 11.22 0.00 3.18
229 230 4.612412 GACACCCGGCCGTTCACA 62.612 66.667 26.12 0.00 0.00 3.58
230 231 4.619227 ACACCCGGCCGTTCACAG 62.619 66.667 26.12 7.18 0.00 3.66
234 235 3.283684 CCGGCCGTTCACAGCAAA 61.284 61.111 26.12 0.00 0.00 3.68
235 236 2.718731 CGGCCGTTCACAGCAAAA 59.281 55.556 19.50 0.00 0.00 2.44
236 237 1.064946 CGGCCGTTCACAGCAAAAA 59.935 52.632 19.50 0.00 0.00 1.94
321 322 1.421268 TGGATCGGCATTGCTCCTAAT 59.579 47.619 14.42 0.73 0.00 1.73
333 338 6.676943 GCATTGCTCCTAATAACACGCTTTTA 60.677 38.462 0.16 0.00 0.00 1.52
334 339 6.804770 TTGCTCCTAATAACACGCTTTTAA 57.195 33.333 0.00 0.00 0.00 1.52
414 419 8.293867 AGATATTTCTGTATGAAGAGTAGCGAC 58.706 37.037 0.00 0.00 35.89 5.19
467 905 3.243569 CGGGTTTGTGGTGCAAGAAATTA 60.244 43.478 0.00 0.00 38.47 1.40
484 922 3.896648 ATTAACCAGCACTTTGACACG 57.103 42.857 0.00 0.00 0.00 4.49
494 957 5.175491 CAGCACTTTGACACGCAAAATATTT 59.825 36.000 0.00 0.00 45.26 1.40
496 959 6.582295 AGCACTTTGACACGCAAAATATTTAG 59.418 34.615 0.01 0.00 45.26 1.85
499 962 8.015087 CACTTTGACACGCAAAATATTTAGAGA 58.985 33.333 0.01 0.00 45.26 3.10
513 976 7.814264 ATATTTAGAGAAAGTTGGCATGAGG 57.186 36.000 0.00 0.00 0.00 3.86
516 979 2.641815 AGAGAAAGTTGGCATGAGGACT 59.358 45.455 0.00 0.00 0.00 3.85
518 981 4.081198 AGAGAAAGTTGGCATGAGGACTAG 60.081 45.833 0.00 0.00 0.00 2.57
519 982 2.409948 AAGTTGGCATGAGGACTAGC 57.590 50.000 0.00 0.00 0.00 3.42
522 985 4.865865 GGCATGAGGACTAGCCAC 57.134 61.111 0.00 0.88 46.26 5.01
523 986 1.907739 GGCATGAGGACTAGCCACA 59.092 57.895 0.00 5.97 46.26 4.17
524 987 0.253044 GGCATGAGGACTAGCCACAA 59.747 55.000 0.00 0.00 46.26 3.33
525 988 1.133976 GGCATGAGGACTAGCCACAAT 60.134 52.381 0.00 0.00 46.26 2.71
526 989 1.945394 GCATGAGGACTAGCCACAATG 59.055 52.381 0.00 7.48 40.75 2.82
527 990 1.945394 CATGAGGACTAGCCACAATGC 59.055 52.381 7.24 0.00 40.75 3.56
528 991 0.983467 TGAGGACTAGCCACAATGCA 59.017 50.000 0.00 0.00 40.02 3.96
529 992 1.561076 TGAGGACTAGCCACAATGCAT 59.439 47.619 0.00 0.00 40.02 3.96
530 993 2.771372 TGAGGACTAGCCACAATGCATA 59.229 45.455 0.00 0.00 40.02 3.14
531 994 3.181462 TGAGGACTAGCCACAATGCATAG 60.181 47.826 0.00 0.00 40.02 2.23
532 995 2.774234 AGGACTAGCCACAATGCATAGT 59.226 45.455 0.00 0.00 40.02 2.12
533 996 3.967326 AGGACTAGCCACAATGCATAGTA 59.033 43.478 0.00 0.00 40.02 1.82
534 997 4.408921 AGGACTAGCCACAATGCATAGTAA 59.591 41.667 0.00 0.00 40.02 2.24
535 998 4.511826 GGACTAGCCACAATGCATAGTAAC 59.488 45.833 0.00 0.00 36.34 2.50
536 999 5.097742 ACTAGCCACAATGCATAGTAACA 57.902 39.130 0.00 0.00 0.00 2.41
537 1000 5.684704 ACTAGCCACAATGCATAGTAACAT 58.315 37.500 0.00 0.00 0.00 2.71
538 1001 6.826668 ACTAGCCACAATGCATAGTAACATA 58.173 36.000 0.00 0.00 0.00 2.29
539 1002 6.706270 ACTAGCCACAATGCATAGTAACATAC 59.294 38.462 0.00 0.00 0.00 2.39
540 1003 5.436175 AGCCACAATGCATAGTAACATACA 58.564 37.500 0.00 0.00 0.00 2.29
541 1004 5.296780 AGCCACAATGCATAGTAACATACAC 59.703 40.000 0.00 0.00 0.00 2.90
542 1005 5.296780 GCCACAATGCATAGTAACATACACT 59.703 40.000 0.00 0.00 0.00 3.55
543 1006 6.481976 GCCACAATGCATAGTAACATACACTA 59.518 38.462 0.00 0.00 33.22 2.74
544 1007 7.307396 GCCACAATGCATAGTAACATACACTAG 60.307 40.741 0.00 0.00 32.24 2.57
545 1008 7.710907 CCACAATGCATAGTAACATACACTAGT 59.289 37.037 0.00 0.00 32.24 2.57
546 1009 9.744468 CACAATGCATAGTAACATACACTAGTA 57.256 33.333 0.00 0.00 32.24 1.82
561 1024 9.856488 CATACACTAGTAACATACACATATCCC 57.144 37.037 0.00 0.00 33.13 3.85
562 1025 9.824216 ATACACTAGTAACATACACATATCCCT 57.176 33.333 0.00 0.00 33.13 4.20
564 1027 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
565 1028 9.516546 CACTAGTAACATACACATATCCCTAGA 57.483 37.037 0.00 0.00 0.00 2.43
566 1029 9.517868 ACTAGTAACATACACATATCCCTAGAC 57.482 37.037 0.00 0.00 0.00 2.59
567 1030 9.742144 CTAGTAACATACACATATCCCTAGACT 57.258 37.037 0.00 0.00 0.00 3.24
589 1052 9.756571 AGACTATATTACTACCTTCATAGTGGG 57.243 37.037 0.00 0.00 36.09 4.61
590 1053 9.531158 GACTATATTACTACCTTCATAGTGGGT 57.469 37.037 0.00 0.00 36.09 4.51
597 1060 7.983166 ACTACCTTCATAGTGGGTAATAACA 57.017 36.000 0.00 0.00 35.51 2.41
598 1061 8.562949 ACTACCTTCATAGTGGGTAATAACAT 57.437 34.615 0.00 0.00 35.51 2.71
599 1062 9.664777 ACTACCTTCATAGTGGGTAATAACATA 57.335 33.333 0.00 0.00 35.51 2.29
602 1065 8.999895 ACCTTCATAGTGGGTAATAACATAAGT 58.000 33.333 0.00 0.00 0.00 2.24
603 1066 9.273016 CCTTCATAGTGGGTAATAACATAAGTG 57.727 37.037 0.00 0.00 0.00 3.16
604 1067 9.832445 CTTCATAGTGGGTAATAACATAAGTGT 57.168 33.333 0.00 0.00 41.28 3.55
605 1068 9.607988 TTCATAGTGGGTAATAACATAAGTGTG 57.392 33.333 0.00 0.00 38.92 3.82
606 1069 8.208224 TCATAGTGGGTAATAACATAAGTGTGG 58.792 37.037 0.00 0.00 38.92 4.17
607 1070 6.382919 AGTGGGTAATAACATAAGTGTGGT 57.617 37.500 0.00 0.00 38.92 4.16
608 1071 7.499200 AGTGGGTAATAACATAAGTGTGGTA 57.501 36.000 0.00 0.00 38.92 3.25
609 1072 7.920227 AGTGGGTAATAACATAAGTGTGGTAA 58.080 34.615 0.00 0.00 38.92 2.85
610 1073 7.825761 AGTGGGTAATAACATAAGTGTGGTAAC 59.174 37.037 0.00 0.00 38.92 2.50
625 1088 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
626 1089 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
627 1090 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
628 1091 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
629 1092 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
630 1093 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
631 1094 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
632 1095 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
633 1096 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
634 1097 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
635 1098 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
636 1099 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
656 1119 8.890472 AGGTTATAGACTTATATTGCATTGGGA 58.110 33.333 0.00 0.00 0.00 4.37
657 1120 8.947115 GGTTATAGACTTATATTGCATTGGGAC 58.053 37.037 0.00 0.00 0.00 4.46
658 1121 9.502091 GTTATAGACTTATATTGCATTGGGACA 57.498 33.333 0.00 0.00 0.00 4.02
660 1123 6.889301 AGACTTATATTGCATTGGGACATG 57.111 37.500 0.00 0.00 39.30 3.21
661 1124 6.367983 AGACTTATATTGCATTGGGACATGT 58.632 36.000 0.00 0.00 39.30 3.21
662 1125 6.263842 AGACTTATATTGCATTGGGACATGTG 59.736 38.462 1.15 0.00 39.30 3.21
663 1126 6.128486 ACTTATATTGCATTGGGACATGTGA 58.872 36.000 1.15 0.00 39.30 3.58
664 1127 6.779049 ACTTATATTGCATTGGGACATGTGAT 59.221 34.615 1.15 0.00 39.30 3.06
665 1128 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
667 1130 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
668 1131 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
669 1132 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
670 1133 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
671 1134 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
672 1135 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
673 1136 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
674 1137 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
675 1138 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
676 1139 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
677 1140 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
678 1141 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
679 1142 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
680 1143 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
681 1144 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
682 1145 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
683 1146 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
684 1147 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
705 1168 6.391479 AGTTACTGTAACTACCTCTCTCCT 57.609 41.667 27.01 3.61 46.53 3.69
706 1169 6.417258 AGTTACTGTAACTACCTCTCTCCTC 58.583 44.000 27.01 0.04 46.53 3.71
707 1170 4.931027 ACTGTAACTACCTCTCTCCTCA 57.069 45.455 0.00 0.00 0.00 3.86
708 1171 5.459982 ACTGTAACTACCTCTCTCCTCAT 57.540 43.478 0.00 0.00 0.00 2.90
709 1172 5.833340 ACTGTAACTACCTCTCTCCTCATT 58.167 41.667 0.00 0.00 0.00 2.57
710 1173 6.971340 ACTGTAACTACCTCTCTCCTCATTA 58.029 40.000 0.00 0.00 0.00 1.90
711 1174 7.411808 ACTGTAACTACCTCTCTCCTCATTAA 58.588 38.462 0.00 0.00 0.00 1.40
712 1175 7.339976 ACTGTAACTACCTCTCTCCTCATTAAC 59.660 40.741 0.00 0.00 0.00 2.01
713 1176 7.411808 TGTAACTACCTCTCTCCTCATTAACT 58.588 38.462 0.00 0.00 0.00 2.24
714 1177 7.556996 TGTAACTACCTCTCTCCTCATTAACTC 59.443 40.741 0.00 0.00 0.00 3.01
715 1178 6.080969 ACTACCTCTCTCCTCATTAACTCA 57.919 41.667 0.00 0.00 0.00 3.41
716 1179 6.678547 ACTACCTCTCTCCTCATTAACTCAT 58.321 40.000 0.00 0.00 0.00 2.90
717 1180 7.129425 ACTACCTCTCTCCTCATTAACTCATT 58.871 38.462 0.00 0.00 0.00 2.57
718 1181 6.232581 ACCTCTCTCCTCATTAACTCATTG 57.767 41.667 0.00 0.00 0.00 2.82
719 1182 5.055812 CCTCTCTCCTCATTAACTCATTGC 58.944 45.833 0.00 0.00 0.00 3.56
720 1183 5.028549 TCTCTCCTCATTAACTCATTGCC 57.971 43.478 0.00 0.00 0.00 4.52
721 1184 4.471025 TCTCTCCTCATTAACTCATTGCCA 59.529 41.667 0.00 0.00 0.00 4.92
722 1185 4.517285 TCTCCTCATTAACTCATTGCCAC 58.483 43.478 0.00 0.00 0.00 5.01
723 1186 4.019411 TCTCCTCATTAACTCATTGCCACA 60.019 41.667 0.00 0.00 0.00 4.17
724 1187 4.858850 TCCTCATTAACTCATTGCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
725 1188 6.000246 TCCTCATTAACTCATTGCCACATA 58.000 37.500 0.00 0.00 0.00 2.29
726 1189 6.422333 TCCTCATTAACTCATTGCCACATAA 58.578 36.000 0.00 0.00 0.00 1.90
727 1190 6.543465 TCCTCATTAACTCATTGCCACATAAG 59.457 38.462 0.00 0.00 0.00 1.73
728 1191 6.135290 TCATTAACTCATTGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
729 1192 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
752 1215 7.660735 CAAATTTGCTGAATTAGACTCGATG 57.339 36.000 5.01 0.00 36.96 3.84
753 1216 6.992063 AATTTGCTGAATTAGACTCGATGT 57.008 33.333 0.00 0.00 36.20 3.06
754 1217 6.992063 ATTTGCTGAATTAGACTCGATGTT 57.008 33.333 0.00 0.00 0.00 2.71
755 1218 8.492673 AATTTGCTGAATTAGACTCGATGTTA 57.507 30.769 0.00 0.00 36.20 2.41
756 1219 6.887376 TTGCTGAATTAGACTCGATGTTAC 57.113 37.500 0.00 0.00 0.00 2.50
757 1220 6.208988 TGCTGAATTAGACTCGATGTTACT 57.791 37.500 0.00 0.00 0.00 2.24
758 1221 6.036470 TGCTGAATTAGACTCGATGTTACTG 58.964 40.000 0.00 0.00 0.00 2.74
759 1222 5.051374 GCTGAATTAGACTCGATGTTACTGC 60.051 44.000 0.00 0.00 0.00 4.40
760 1223 6.208988 TGAATTAGACTCGATGTTACTGCT 57.791 37.500 0.00 0.00 0.00 4.24
761 1224 6.036470 TGAATTAGACTCGATGTTACTGCTG 58.964 40.000 0.00 0.00 0.00 4.41
762 1225 5.836821 ATTAGACTCGATGTTACTGCTGA 57.163 39.130 0.00 0.00 0.00 4.26
763 1226 5.638596 TTAGACTCGATGTTACTGCTGAA 57.361 39.130 0.00 0.00 0.00 3.02
764 1227 4.103365 AGACTCGATGTTACTGCTGAAG 57.897 45.455 0.00 0.00 0.00 3.02
765 1228 3.508012 AGACTCGATGTTACTGCTGAAGT 59.492 43.478 0.00 0.00 43.40 3.01
766 1229 4.021894 AGACTCGATGTTACTGCTGAAGTT 60.022 41.667 0.00 0.00 40.56 2.66
767 1230 5.183331 AGACTCGATGTTACTGCTGAAGTTA 59.817 40.000 0.00 0.00 40.56 2.24
768 1231 5.162075 ACTCGATGTTACTGCTGAAGTTAC 58.838 41.667 0.00 0.00 40.56 2.50
769 1232 5.047943 ACTCGATGTTACTGCTGAAGTTACT 60.048 40.000 6.50 0.00 38.87 2.24
770 1233 5.399858 TCGATGTTACTGCTGAAGTTACTC 58.600 41.667 6.50 1.79 38.87 2.59
771 1234 4.563184 CGATGTTACTGCTGAAGTTACTCC 59.437 45.833 6.50 0.00 38.87 3.85
772 1235 4.267349 TGTTACTGCTGAAGTTACTCCC 57.733 45.455 6.50 0.00 38.87 4.30
773 1236 3.644265 TGTTACTGCTGAAGTTACTCCCA 59.356 43.478 6.50 0.00 38.87 4.37
774 1237 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
775 1238 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
776 1239 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
777 1240 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
778 1241 2.224281 TGCTGAAGTTACTCCCACTGTG 60.224 50.000 0.00 0.00 0.00 3.66
779 1242 2.417719 CTGAAGTTACTCCCACTGTGC 58.582 52.381 1.29 0.00 0.00 4.57
780 1243 1.071699 TGAAGTTACTCCCACTGTGCC 59.928 52.381 1.29 0.00 0.00 5.01
781 1244 1.348036 GAAGTTACTCCCACTGTGCCT 59.652 52.381 1.29 0.00 0.00 4.75
782 1245 2.320681 AGTTACTCCCACTGTGCCTA 57.679 50.000 1.29 0.00 0.00 3.93
783 1246 2.180276 AGTTACTCCCACTGTGCCTAG 58.820 52.381 1.29 1.78 0.00 3.02
784 1247 1.900486 GTTACTCCCACTGTGCCTAGT 59.100 52.381 1.29 7.58 0.00 2.57
785 1248 1.848652 TACTCCCACTGTGCCTAGTC 58.151 55.000 1.29 0.00 0.00 2.59
786 1249 0.115349 ACTCCCACTGTGCCTAGTCT 59.885 55.000 1.29 0.00 0.00 3.24
787 1250 0.534412 CTCCCACTGTGCCTAGTCTG 59.466 60.000 1.29 0.00 0.00 3.51
788 1251 0.114364 TCCCACTGTGCCTAGTCTGA 59.886 55.000 1.29 0.00 0.00 3.27
789 1252 0.534412 CCCACTGTGCCTAGTCTGAG 59.466 60.000 1.29 0.00 0.00 3.35
804 1268 7.231722 GCCTAGTCTGAGTCCTTAGAATATTGA 59.768 40.741 0.00 0.00 28.14 2.57
845 1309 0.981277 AATCCTGAATCCCGGACCGT 60.981 55.000 13.94 0.00 30.90 4.83
980 1464 2.638363 AGTCCTCTATAAATTCCGGCCC 59.362 50.000 0.00 0.00 0.00 5.80
1018 1508 2.202492 CTCCCGACTCAAGCGACG 60.202 66.667 0.00 0.00 0.00 5.12
1061 1559 0.967380 CACCCCATTCCAACTGCTCC 60.967 60.000 0.00 0.00 0.00 4.70
1076 1602 2.592001 TCCCGCTCCTCGATCTCG 60.592 66.667 0.00 0.00 41.67 4.04
1171 1698 3.423154 CCACCCGCGTCAAGCTTC 61.423 66.667 4.92 0.00 45.59 3.86
1172 1699 3.423154 CACCCGCGTCAAGCTTCC 61.423 66.667 4.92 0.00 45.59 3.46
1179 1706 4.699522 GTCAAGCTTCCCGCCGGT 62.700 66.667 1.90 0.00 40.39 5.28
1244 1789 4.016706 CCCGTCCTCCACCACCAC 62.017 72.222 0.00 0.00 0.00 4.16
1245 1790 3.238497 CCGTCCTCCACCACCACA 61.238 66.667 0.00 0.00 0.00 4.17
1548 2156 1.970917 GCGAGCGTCCCATCAACAAG 61.971 60.000 0.00 0.00 0.00 3.16
1610 2218 8.430801 AGATGCAAGATACAGTTAGATGTTTC 57.569 34.615 0.00 0.00 34.56 2.78
1632 2266 6.331369 TCTGAGTTTTGACCCAATTTGATC 57.669 37.500 0.00 0.00 0.00 2.92
1637 2271 3.380471 TTGACCCAATTTGATCCCGAT 57.620 42.857 0.00 0.00 0.00 4.18
1644 2278 3.755378 CCAATTTGATCCCGATCTGATCC 59.245 47.826 11.84 0.00 38.26 3.36
1649 2283 4.712051 TGATCCCGATCTGATCCATTTT 57.288 40.909 11.84 0.00 38.26 1.82
1696 2410 2.020720 ACATAGAGTGAGCTCGTCCTG 58.979 52.381 9.64 10.89 46.03 3.86
1728 2442 1.598601 GTGTAAAACGAACGCCCTTGA 59.401 47.619 0.00 0.00 0.00 3.02
1730 2444 2.224549 TGTAAAACGAACGCCCTTGATG 59.775 45.455 0.00 0.00 0.00 3.07
1749 2486 9.133627 CCTTGATGTTCGATATAACTACATGAG 57.866 37.037 0.00 0.00 30.14 2.90
1751 2488 6.801862 TGATGTTCGATATAACTACATGAGCG 59.198 38.462 0.00 0.00 30.14 5.03
1752 2489 5.458015 TGTTCGATATAACTACATGAGCGG 58.542 41.667 0.00 0.00 0.00 5.52
1785 2528 4.080975 TGAGACACATGGTTCATGCATCTA 60.081 41.667 0.00 0.00 44.80 1.98
1787 2530 5.443283 AGACACATGGTTCATGCATCTAAT 58.557 37.500 0.00 0.00 44.80 1.73
1801 2544 3.065371 GCATCTAATTCTTTGACCCGTGG 59.935 47.826 0.00 0.00 0.00 4.94
1836 2579 4.022416 TCCGTCCTTTGATGATTTGTTTGG 60.022 41.667 0.00 0.00 0.00 3.28
1845 2588 1.134995 TGATTTGTTTGGCGCAACACA 60.135 42.857 10.83 4.14 0.00 3.72
1846 2589 1.522258 GATTTGTTTGGCGCAACACAG 59.478 47.619 10.83 0.00 0.00 3.66
1914 2686 0.039978 ATAAGCTCCGCGTGAGATCG 60.040 55.000 23.26 0.00 44.42 3.69
2021 2802 2.810012 GCGGTTCCGGCGAGATTTC 61.810 63.158 9.30 0.00 0.00 2.17
2051 2833 8.066595 AGAATTTTCATGATCGAATCGATGAAC 58.933 33.333 23.67 9.28 47.00 3.18
2133 2926 1.408822 GCGGTTGGGATTCTCTCCAAT 60.409 52.381 0.00 0.00 46.98 3.16
2135 2928 3.356290 CGGTTGGGATTCTCTCCAATTT 58.644 45.455 0.00 0.00 46.98 1.82
2137 2930 3.701542 GGTTGGGATTCTCTCCAATTTCC 59.298 47.826 0.00 0.00 46.98 3.13
2162 2955 1.372582 TGCGCAAGAAGATGATGGTC 58.627 50.000 8.16 0.00 43.02 4.02
2165 2958 1.303309 GCAAGAAGATGATGGTCGGG 58.697 55.000 0.00 0.00 0.00 5.14
2181 2991 2.815647 GGTCGCACAGCTGGCTAC 60.816 66.667 19.93 18.56 0.00 3.58
2200 3040 7.455058 TGGCTACCTTCTTGTTTAATCAGTTA 58.545 34.615 0.00 0.00 0.00 2.24
2237 3077 2.281070 AGTTGCTCGCCACACCAG 60.281 61.111 0.00 0.00 0.00 4.00
2238 3078 2.591715 GTTGCTCGCCACACCAGT 60.592 61.111 0.00 0.00 0.00 4.00
2243 3083 1.291877 GCTCGCCACACCAGTACTTG 61.292 60.000 0.00 0.00 0.00 3.16
2326 3173 0.175989 TCATACATTGTACCGGCGCA 59.824 50.000 10.83 0.00 0.00 6.09
2327 3174 0.581529 CATACATTGTACCGGCGCAG 59.418 55.000 10.83 4.65 0.00 5.18
2329 3176 0.458889 TACATTGTACCGGCGCAGAC 60.459 55.000 10.83 0.19 0.00 3.51
2330 3177 1.739929 CATTGTACCGGCGCAGACA 60.740 57.895 10.83 3.45 27.25 3.41
2331 3178 1.740296 ATTGTACCGGCGCAGACAC 60.740 57.895 10.83 7.14 27.25 3.67
2332 3179 2.443260 ATTGTACCGGCGCAGACACA 62.443 55.000 10.83 9.92 27.25 3.72
2333 3180 3.110178 GTACCGGCGCAGACACAC 61.110 66.667 10.83 0.00 27.25 3.82
2334 3181 3.607661 TACCGGCGCAGACACACA 61.608 61.111 10.83 0.00 27.25 3.72
2335 3182 3.851845 TACCGGCGCAGACACACAC 62.852 63.158 10.83 0.00 27.25 3.82
2337 3184 3.268603 CGGCGCAGACACACACAA 61.269 61.111 10.83 0.00 27.25 3.33
2338 3185 2.818487 CGGCGCAGACACACACAAA 61.818 57.895 10.83 0.00 27.25 2.83
2339 3186 1.431440 GGCGCAGACACACACAAAA 59.569 52.632 10.83 0.00 31.66 2.44
2351 3198 6.148480 AGACACACACAAAAATCATCTCTAGC 59.852 38.462 0.00 0.00 0.00 3.42
2533 3496 1.970917 CTGAAATGTCAGCGTCGCCC 61.971 60.000 14.86 2.71 44.74 6.13
2538 3532 4.719369 GTCAGCGTCGCCCGACTT 62.719 66.667 23.20 4.42 42.54 3.01
2572 3567 2.642700 GCAAAATGCCACGGACGT 59.357 55.556 0.00 0.00 37.42 4.34
2642 3643 4.083862 GAGTCACCCGGGCTGGAC 62.084 72.222 24.08 24.87 42.00 4.02
2733 3740 1.021968 GCGTTTTTCCAGTGTCCAGT 58.978 50.000 0.00 0.00 0.00 4.00
2734 3741 1.268539 GCGTTTTTCCAGTGTCCAGTG 60.269 52.381 0.00 0.00 0.00 3.66
2735 3742 2.014128 CGTTTTTCCAGTGTCCAGTGT 58.986 47.619 1.74 0.00 0.00 3.55
2736 3743 2.422127 CGTTTTTCCAGTGTCCAGTGTT 59.578 45.455 1.74 0.00 0.00 3.32
2737 3744 3.486875 CGTTTTTCCAGTGTCCAGTGTTC 60.487 47.826 1.74 0.00 0.00 3.18
2738 3745 3.358111 TTTTCCAGTGTCCAGTGTTCA 57.642 42.857 1.74 0.00 0.00 3.18
2739 3746 2.620251 TTCCAGTGTCCAGTGTTCAG 57.380 50.000 1.74 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.204941 AGTGAGGGACGTATCTTGTGC 59.795 52.381 0.00 0.00 0.00 4.57
1 2 2.881074 CAGTGAGGGACGTATCTTGTG 58.119 52.381 0.00 0.00 0.00 3.33
4 5 0.456221 CGCAGTGAGGGACGTATCTT 59.544 55.000 0.00 0.00 0.00 2.40
5 6 0.680280 ACGCAGTGAGGGACGTATCT 60.680 55.000 0.00 0.00 42.51 1.98
6 7 1.807886 ACGCAGTGAGGGACGTATC 59.192 57.895 0.00 0.00 42.51 2.24
7 8 4.013702 ACGCAGTGAGGGACGTAT 57.986 55.556 0.00 0.00 42.51 3.06
19 20 2.693762 CCCAGCCATTCACACGCAG 61.694 63.158 0.00 0.00 0.00 5.18
20 21 2.672651 CCCAGCCATTCACACGCA 60.673 61.111 0.00 0.00 0.00 5.24
21 22 0.958382 TAACCCAGCCATTCACACGC 60.958 55.000 0.00 0.00 0.00 5.34
22 23 1.401552 CATAACCCAGCCATTCACACG 59.598 52.381 0.00 0.00 0.00 4.49
23 24 1.134946 GCATAACCCAGCCATTCACAC 59.865 52.381 0.00 0.00 0.00 3.82
24 25 1.473258 GCATAACCCAGCCATTCACA 58.527 50.000 0.00 0.00 0.00 3.58
36 37 1.376683 TGCGTCAGTGGGCATAACC 60.377 57.895 5.79 0.00 33.52 2.85
37 38 0.673644 AGTGCGTCAGTGGGCATAAC 60.674 55.000 11.95 1.79 41.83 1.89
38 39 0.673333 CAGTGCGTCAGTGGGCATAA 60.673 55.000 11.95 0.00 41.83 1.90
39 40 1.079197 CAGTGCGTCAGTGGGCATA 60.079 57.895 11.95 0.00 41.83 3.14
40 41 2.189191 ATCAGTGCGTCAGTGGGCAT 62.189 55.000 11.95 1.28 41.83 4.40
41 42 2.786539 GATCAGTGCGTCAGTGGGCA 62.787 60.000 12.62 5.79 35.69 5.36
42 43 2.046892 ATCAGTGCGTCAGTGGGC 60.047 61.111 12.62 0.00 35.69 5.36
43 44 1.016130 GTGATCAGTGCGTCAGTGGG 61.016 60.000 0.00 0.00 35.69 4.61
44 45 0.319813 TGTGATCAGTGCGTCAGTGG 60.320 55.000 0.00 0.00 35.69 4.00
45 46 1.066136 CTGTGATCAGTGCGTCAGTG 58.934 55.000 0.00 7.96 36.97 3.66
46 47 3.504021 CTGTGATCAGTGCGTCAGT 57.496 52.632 0.00 0.00 36.97 3.41
65 66 4.392619 CGTATTTCCGCTGTGTTAAACA 57.607 40.909 0.00 0.00 37.22 2.83
77 78 1.343821 GTGCAGACGCGTATTTCCG 59.656 57.895 13.97 0.00 42.97 4.30
78 79 1.343821 CGTGCAGACGCGTATTTCC 59.656 57.895 13.97 0.00 44.66 3.13
79 80 4.925786 CGTGCAGACGCGTATTTC 57.074 55.556 13.97 3.49 44.66 2.17
93 94 0.382873 ATTACAGCCATGCATGCGTG 59.617 50.000 29.36 29.36 0.00 5.34
94 95 1.105457 AATTACAGCCATGCATGCGT 58.895 45.000 21.69 18.25 0.00 5.24
95 96 3.302555 CTTAATTACAGCCATGCATGCG 58.697 45.455 21.69 15.04 0.00 4.73
96 97 3.318839 TCCTTAATTACAGCCATGCATGC 59.681 43.478 21.69 11.82 0.00 4.06
97 98 5.518848 TTCCTTAATTACAGCCATGCATG 57.481 39.130 20.19 20.19 0.00 4.06
98 99 4.038402 GCTTCCTTAATTACAGCCATGCAT 59.962 41.667 0.00 0.00 0.00 3.96
99 100 3.381272 GCTTCCTTAATTACAGCCATGCA 59.619 43.478 0.00 0.00 0.00 3.96
100 101 3.969899 GCTTCCTTAATTACAGCCATGC 58.030 45.455 0.00 0.00 0.00 4.06
105 106 5.429130 AGTACAGGCTTCCTTAATTACAGC 58.571 41.667 0.00 0.00 0.00 4.40
106 107 9.614792 AATTAGTACAGGCTTCCTTAATTACAG 57.385 33.333 0.00 0.00 27.56 2.74
113 114 9.832445 CAGATTTAATTAGTACAGGCTTCCTTA 57.168 33.333 0.00 0.00 0.00 2.69
114 115 7.283354 GCAGATTTAATTAGTACAGGCTTCCTT 59.717 37.037 0.00 0.00 0.00 3.36
115 116 6.768381 GCAGATTTAATTAGTACAGGCTTCCT 59.232 38.462 0.00 0.00 0.00 3.36
116 117 6.292919 CGCAGATTTAATTAGTACAGGCTTCC 60.293 42.308 0.00 0.00 0.00 3.46
117 118 6.479001 TCGCAGATTTAATTAGTACAGGCTTC 59.521 38.462 0.00 0.00 0.00 3.86
118 119 6.346096 TCGCAGATTTAATTAGTACAGGCTT 58.654 36.000 0.00 0.00 0.00 4.35
119 120 5.914033 TCGCAGATTTAATTAGTACAGGCT 58.086 37.500 0.00 0.00 0.00 4.58
120 121 5.177696 CCTCGCAGATTTAATTAGTACAGGC 59.822 44.000 0.00 0.00 33.89 4.85
121 122 6.513180 TCCTCGCAGATTTAATTAGTACAGG 58.487 40.000 0.00 0.00 33.89 4.00
122 123 8.594881 AATCCTCGCAGATTTAATTAGTACAG 57.405 34.615 0.00 0.00 32.46 2.74
123 124 9.692749 CTAATCCTCGCAGATTTAATTAGTACA 57.307 33.333 5.27 0.00 37.62 2.90
124 125 8.648968 GCTAATCCTCGCAGATTTAATTAGTAC 58.351 37.037 5.27 0.00 37.62 2.73
125 126 8.585881 AGCTAATCCTCGCAGATTTAATTAGTA 58.414 33.333 5.27 0.00 37.62 1.82
126 127 7.445945 AGCTAATCCTCGCAGATTTAATTAGT 58.554 34.615 5.27 0.00 37.62 2.24
127 128 7.897575 AGCTAATCCTCGCAGATTTAATTAG 57.102 36.000 5.27 0.00 37.62 1.73
128 129 9.424319 CTTAGCTAATCCTCGCAGATTTAATTA 57.576 33.333 6.64 0.00 37.62 1.40
129 130 7.389053 CCTTAGCTAATCCTCGCAGATTTAATT 59.611 37.037 6.64 0.00 37.62 1.40
130 131 6.876257 CCTTAGCTAATCCTCGCAGATTTAAT 59.124 38.462 6.64 0.00 37.62 1.40
131 132 6.183360 ACCTTAGCTAATCCTCGCAGATTTAA 60.183 38.462 6.64 0.00 37.62 1.52
132 133 5.304614 ACCTTAGCTAATCCTCGCAGATTTA 59.695 40.000 6.64 0.00 37.62 1.40
133 134 4.101741 ACCTTAGCTAATCCTCGCAGATTT 59.898 41.667 6.64 0.00 37.62 2.17
134 135 3.643792 ACCTTAGCTAATCCTCGCAGATT 59.356 43.478 6.64 5.30 39.73 2.40
135 136 3.235200 ACCTTAGCTAATCCTCGCAGAT 58.765 45.455 6.64 0.00 33.89 2.90
136 137 2.667470 ACCTTAGCTAATCCTCGCAGA 58.333 47.619 6.64 0.00 0.00 4.26
137 138 3.460857 AACCTTAGCTAATCCTCGCAG 57.539 47.619 6.64 0.00 0.00 5.18
138 139 3.906720 AAACCTTAGCTAATCCTCGCA 57.093 42.857 6.64 0.00 0.00 5.10
139 140 4.510711 GGTTAAACCTTAGCTAATCCTCGC 59.489 45.833 6.64 0.00 34.73 5.03
140 141 4.743644 CGGTTAAACCTTAGCTAATCCTCG 59.256 45.833 6.64 0.00 35.66 4.63
141 142 5.752472 GTCGGTTAAACCTTAGCTAATCCTC 59.248 44.000 6.64 0.00 35.66 3.71
142 143 5.668471 GTCGGTTAAACCTTAGCTAATCCT 58.332 41.667 6.64 0.00 35.66 3.24
143 144 4.505556 CGTCGGTTAAACCTTAGCTAATCC 59.494 45.833 6.64 1.36 35.66 3.01
144 145 4.026228 GCGTCGGTTAAACCTTAGCTAATC 60.026 45.833 6.64 0.00 35.66 1.75
145 146 3.867493 GCGTCGGTTAAACCTTAGCTAAT 59.133 43.478 6.64 0.00 35.66 1.73
146 147 3.253230 GCGTCGGTTAAACCTTAGCTAA 58.747 45.455 5.94 5.94 35.66 3.09
147 148 2.731968 CGCGTCGGTTAAACCTTAGCTA 60.732 50.000 0.00 0.00 35.66 3.32
148 149 1.718396 GCGTCGGTTAAACCTTAGCT 58.282 50.000 0.00 0.00 35.66 3.32
149 150 0.367887 CGCGTCGGTTAAACCTTAGC 59.632 55.000 0.00 0.00 35.66 3.09
150 151 0.994263 CCGCGTCGGTTAAACCTTAG 59.006 55.000 4.92 0.00 42.73 2.18
151 152 3.120627 CCGCGTCGGTTAAACCTTA 57.879 52.632 4.92 0.00 42.73 2.69
152 153 3.955775 CCGCGTCGGTTAAACCTT 58.044 55.556 4.92 0.00 42.73 3.50
162 163 2.579787 CCTTGCTACTCCGCGTCG 60.580 66.667 4.92 0.00 0.00 5.12
163 164 1.516603 GTCCTTGCTACTCCGCGTC 60.517 63.158 4.92 0.00 0.00 5.19
164 165 2.572284 GTCCTTGCTACTCCGCGT 59.428 61.111 4.92 0.00 0.00 6.01
165 166 2.579787 CGTCCTTGCTACTCCGCG 60.580 66.667 0.00 0.00 0.00 6.46
166 167 2.202756 CCGTCCTTGCTACTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
167 168 2.202756 GCCGTCCTTGCTACTCCG 60.203 66.667 0.00 0.00 0.00 4.63
168 169 2.187163 GGCCGTCCTTGCTACTCC 59.813 66.667 0.00 0.00 0.00 3.85
169 170 1.153549 CAGGCCGTCCTTGCTACTC 60.154 63.158 0.00 0.00 41.93 2.59
170 171 0.978146 ATCAGGCCGTCCTTGCTACT 60.978 55.000 0.00 0.00 41.93 2.57
171 172 0.811616 CATCAGGCCGTCCTTGCTAC 60.812 60.000 0.00 0.00 41.93 3.58
172 173 0.975556 TCATCAGGCCGTCCTTGCTA 60.976 55.000 0.00 0.00 41.93 3.49
173 174 1.630126 ATCATCAGGCCGTCCTTGCT 61.630 55.000 0.00 0.00 41.93 3.91
174 175 1.153086 ATCATCAGGCCGTCCTTGC 60.153 57.895 0.00 0.00 41.93 4.01
175 176 0.178767 TCATCATCAGGCCGTCCTTG 59.821 55.000 0.00 0.00 41.93 3.61
176 177 0.467384 CTCATCATCAGGCCGTCCTT 59.533 55.000 0.00 0.00 41.93 3.36
177 178 0.397675 TCTCATCATCAGGCCGTCCT 60.398 55.000 0.00 0.00 45.66 3.85
178 179 0.249657 GTCTCATCATCAGGCCGTCC 60.250 60.000 0.00 0.00 0.00 4.79
179 180 0.596083 CGTCTCATCATCAGGCCGTC 60.596 60.000 0.00 0.00 0.00 4.79
180 181 1.439228 CGTCTCATCATCAGGCCGT 59.561 57.895 0.00 0.00 0.00 5.68
181 182 1.300465 CCGTCTCATCATCAGGCCG 60.300 63.158 0.00 0.00 0.00 6.13
182 183 0.249657 GACCGTCTCATCATCAGGCC 60.250 60.000 0.00 0.00 0.00 5.19
183 184 0.461548 TGACCGTCTCATCATCAGGC 59.538 55.000 0.00 0.00 0.00 4.85
184 185 1.534805 CGTGACCGTCTCATCATCAGG 60.535 57.143 0.00 0.00 0.00 3.86
185 186 1.401905 TCGTGACCGTCTCATCATCAG 59.598 52.381 0.00 0.00 35.01 2.90
186 187 1.459450 TCGTGACCGTCTCATCATCA 58.541 50.000 0.00 0.00 35.01 3.07
187 188 2.292016 AGATCGTGACCGTCTCATCATC 59.708 50.000 0.00 0.00 35.01 2.92
188 189 2.302260 AGATCGTGACCGTCTCATCAT 58.698 47.619 0.00 0.00 35.01 2.45
189 190 1.751437 AGATCGTGACCGTCTCATCA 58.249 50.000 0.00 0.00 35.01 3.07
190 191 2.853731 AAGATCGTGACCGTCTCATC 57.146 50.000 0.00 3.30 35.01 2.92
191 192 3.945921 TCTAAAGATCGTGACCGTCTCAT 59.054 43.478 0.00 0.00 35.01 2.90
192 193 3.126514 GTCTAAAGATCGTGACCGTCTCA 59.873 47.826 0.00 0.00 35.01 3.27
193 194 3.126514 TGTCTAAAGATCGTGACCGTCTC 59.873 47.826 0.00 0.00 35.01 3.36
194 195 3.079578 TGTCTAAAGATCGTGACCGTCT 58.920 45.455 0.00 0.00 35.01 4.18
195 196 3.169733 GTGTCTAAAGATCGTGACCGTC 58.830 50.000 0.00 0.00 35.01 4.79
196 197 2.094854 GGTGTCTAAAGATCGTGACCGT 60.095 50.000 7.56 0.00 35.01 4.83
197 198 2.527100 GGTGTCTAAAGATCGTGACCG 58.473 52.381 7.56 0.00 0.00 4.79
198 199 2.734492 CGGGTGTCTAAAGATCGTGACC 60.734 54.545 7.56 0.00 0.00 4.02
199 200 2.527100 CGGGTGTCTAAAGATCGTGAC 58.473 52.381 0.00 0.00 0.00 3.67
200 201 1.475280 CCGGGTGTCTAAAGATCGTGA 59.525 52.381 0.00 0.00 0.00 4.35
201 202 1.922570 CCGGGTGTCTAAAGATCGTG 58.077 55.000 0.00 0.00 0.00 4.35
202 203 0.175073 GCCGGGTGTCTAAAGATCGT 59.825 55.000 2.18 0.00 0.00 3.73
203 204 0.529992 GGCCGGGTGTCTAAAGATCG 60.530 60.000 2.18 0.00 0.00 3.69
204 205 0.529992 CGGCCGGGTGTCTAAAGATC 60.530 60.000 20.10 0.00 0.00 2.75
205 206 1.262640 ACGGCCGGGTGTCTAAAGAT 61.263 55.000 31.76 0.00 0.00 2.40
206 207 1.474332 AACGGCCGGGTGTCTAAAGA 61.474 55.000 31.76 0.00 0.00 2.52
207 208 1.004200 AACGGCCGGGTGTCTAAAG 60.004 57.895 31.76 0.00 0.00 1.85
208 209 1.004679 GAACGGCCGGGTGTCTAAA 60.005 57.895 31.76 0.00 0.00 1.85
209 210 2.208619 TGAACGGCCGGGTGTCTAA 61.209 57.895 31.76 2.56 0.00 2.10
210 211 2.601067 TGAACGGCCGGGTGTCTA 60.601 61.111 31.76 5.20 0.00 2.59
211 212 4.309950 GTGAACGGCCGGGTGTCT 62.310 66.667 31.76 3.35 0.00 3.41
212 213 4.612412 TGTGAACGGCCGGGTGTC 62.612 66.667 31.76 20.32 0.00 3.67
213 214 4.619227 CTGTGAACGGCCGGGTGT 62.619 66.667 31.76 11.72 0.00 4.16
234 235 4.142026 CCTTTTGTCCTTCCTTCGGTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
235 236 3.383505 CCTTTTGTCCTTCCTTCGGTTTT 59.616 43.478 0.00 0.00 0.00 2.43
236 237 2.956333 CCTTTTGTCCTTCCTTCGGTTT 59.044 45.455 0.00 0.00 0.00 3.27
237 238 2.583143 CCTTTTGTCCTTCCTTCGGTT 58.417 47.619 0.00 0.00 0.00 4.44
238 239 1.202891 CCCTTTTGTCCTTCCTTCGGT 60.203 52.381 0.00 0.00 0.00 4.69
239 240 1.202891 ACCCTTTTGTCCTTCCTTCGG 60.203 52.381 0.00 0.00 0.00 4.30
240 241 2.152016 GACCCTTTTGTCCTTCCTTCG 58.848 52.381 0.00 0.00 0.00 3.79
249 250 0.402121 AGGAGCAGGACCCTTTTGTC 59.598 55.000 0.00 0.00 34.42 3.18
250 251 0.402121 GAGGAGCAGGACCCTTTTGT 59.598 55.000 0.00 0.00 31.84 2.83
251 252 0.674895 CGAGGAGCAGGACCCTTTTG 60.675 60.000 0.00 0.00 31.84 2.44
252 253 1.679898 CGAGGAGCAGGACCCTTTT 59.320 57.895 0.00 0.00 31.84 2.27
253 254 3.393360 CGAGGAGCAGGACCCTTT 58.607 61.111 0.00 0.00 31.84 3.11
299 300 0.184451 AGGAGCAATGCCGATCCAAT 59.816 50.000 13.41 0.00 34.08 3.16
321 322 8.149973 AGTTTCTCTTCATTAAAAGCGTGTTA 57.850 30.769 0.00 0.00 0.00 2.41
333 338 5.934625 ACTGATGCGTAAGTTTCTCTTCATT 59.065 36.000 0.00 0.00 37.56 2.57
334 339 5.349817 CACTGATGCGTAAGTTTCTCTTCAT 59.650 40.000 0.00 0.00 37.56 2.57
440 878 0.533308 TGCACCACAAACCCGTACTC 60.533 55.000 0.00 0.00 0.00 2.59
467 905 1.029408 TGCGTGTCAAAGTGCTGGTT 61.029 50.000 0.00 0.00 0.00 3.67
484 922 8.598075 CATGCCAACTTTCTCTAAATATTTTGC 58.402 33.333 5.91 0.00 0.00 3.68
494 957 3.840666 AGTCCTCATGCCAACTTTCTCTA 59.159 43.478 0.00 0.00 0.00 2.43
496 959 3.064900 AGTCCTCATGCCAACTTTCTC 57.935 47.619 0.00 0.00 0.00 2.87
499 962 2.619074 GGCTAGTCCTCATGCCAACTTT 60.619 50.000 0.00 0.00 44.34 2.66
513 976 5.116180 TGTTACTATGCATTGTGGCTAGTC 58.884 41.667 21.78 0.62 33.20 2.59
516 979 6.481976 GTGTATGTTACTATGCATTGTGGCTA 59.518 38.462 21.78 7.67 34.04 3.93
518 981 5.296780 AGTGTATGTTACTATGCATTGTGGC 59.703 40.000 21.78 14.59 0.00 5.01
519 982 6.925610 AGTGTATGTTACTATGCATTGTGG 57.074 37.500 21.78 5.72 0.00 4.17
520 983 8.648557 ACTAGTGTATGTTACTATGCATTGTG 57.351 34.615 21.78 8.05 30.83 3.33
535 998 9.856488 GGGATATGTGTATGTTACTAGTGTATG 57.144 37.037 5.39 0.00 0.00 2.39
536 999 9.824216 AGGGATATGTGTATGTTACTAGTGTAT 57.176 33.333 5.39 0.00 0.00 2.29
538 1001 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
539 1002 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
540 1003 9.517868 GTCTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 0.00 2.57
541 1004 9.742144 AGTCTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
563 1026 9.756571 CCCACTATGAAGGTAGTAATATAGTCT 57.243 37.037 0.00 0.00 33.29 3.24
564 1027 9.531158 ACCCACTATGAAGGTAGTAATATAGTC 57.469 37.037 0.00 0.00 33.29 2.59
571 1034 9.491406 TGTTATTACCCACTATGAAGGTAGTAA 57.509 33.333 0.00 0.00 37.44 2.24
572 1035 9.664777 ATGTTATTACCCACTATGAAGGTAGTA 57.335 33.333 0.00 0.00 37.44 1.82
573 1036 7.983166 TGTTATTACCCACTATGAAGGTAGT 57.017 36.000 0.00 0.00 37.44 2.73
576 1039 8.999895 ACTTATGTTATTACCCACTATGAAGGT 58.000 33.333 0.00 0.00 37.69 3.50
577 1040 9.273016 CACTTATGTTATTACCCACTATGAAGG 57.727 37.037 0.00 0.00 0.00 3.46
578 1041 9.832445 ACACTTATGTTATTACCCACTATGAAG 57.168 33.333 0.00 0.00 34.46 3.02
579 1042 9.607988 CACACTTATGTTATTACCCACTATGAA 57.392 33.333 0.00 0.00 36.72 2.57
580 1043 8.208224 CCACACTTATGTTATTACCCACTATGA 58.792 37.037 0.00 0.00 36.72 2.15
581 1044 7.990886 ACCACACTTATGTTATTACCCACTATG 59.009 37.037 0.00 0.00 36.72 2.23
582 1045 8.097791 ACCACACTTATGTTATTACCCACTAT 57.902 34.615 0.00 0.00 36.72 2.12
583 1046 7.499200 ACCACACTTATGTTATTACCCACTA 57.501 36.000 0.00 0.00 36.72 2.74
584 1047 6.382919 ACCACACTTATGTTATTACCCACT 57.617 37.500 0.00 0.00 36.72 4.00
585 1048 7.607223 TGTTACCACACTTATGTTATTACCCAC 59.393 37.037 0.00 0.00 36.72 4.61
586 1049 7.687388 TGTTACCACACTTATGTTATTACCCA 58.313 34.615 0.00 0.00 36.72 4.51
587 1050 8.617809 CATGTTACCACACTTATGTTATTACCC 58.382 37.037 0.00 0.00 36.72 3.69
588 1051 8.126700 GCATGTTACCACACTTATGTTATTACC 58.873 37.037 0.00 0.00 36.72 2.85
589 1052 8.670135 TGCATGTTACCACACTTATGTTATTAC 58.330 33.333 0.00 0.00 36.72 1.89
590 1053 8.794335 TGCATGTTACCACACTTATGTTATTA 57.206 30.769 0.00 0.00 36.72 0.98
591 1054 7.695480 TGCATGTTACCACACTTATGTTATT 57.305 32.000 0.00 0.00 36.72 1.40
592 1055 7.695480 TTGCATGTTACCACACTTATGTTAT 57.305 32.000 0.00 0.00 36.72 1.89
593 1056 7.511959 TTTGCATGTTACCACACTTATGTTA 57.488 32.000 0.00 0.00 36.72 2.41
594 1057 6.398234 TTTGCATGTTACCACACTTATGTT 57.602 33.333 0.00 0.00 36.72 2.71
595 1058 5.564651 GCTTTGCATGTTACCACACTTATGT 60.565 40.000 0.00 0.00 40.80 2.29
596 1059 4.858692 GCTTTGCATGTTACCACACTTATG 59.141 41.667 0.00 0.00 35.03 1.90
597 1060 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
598 1061 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
599 1062 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
600 1063 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
601 1064 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
602 1065 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
603 1066 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
604 1067 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
605 1068 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
606 1069 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
607 1070 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
608 1071 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
609 1072 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
610 1073 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
630 1093 8.890472 TCCCAATGCAATATAAGTCTATAACCT 58.110 33.333 0.00 0.00 0.00 3.50
631 1094 8.947115 GTCCCAATGCAATATAAGTCTATAACC 58.053 37.037 0.00 0.00 0.00 2.85
632 1095 9.502091 TGTCCCAATGCAATATAAGTCTATAAC 57.498 33.333 0.00 0.00 0.00 1.89
634 1097 9.671279 CATGTCCCAATGCAATATAAGTCTATA 57.329 33.333 0.00 0.00 0.00 1.31
635 1098 8.166061 ACATGTCCCAATGCAATATAAGTCTAT 58.834 33.333 0.00 0.00 0.00 1.98
636 1099 7.445096 CACATGTCCCAATGCAATATAAGTCTA 59.555 37.037 0.00 0.00 0.00 2.59
637 1100 6.263842 CACATGTCCCAATGCAATATAAGTCT 59.736 38.462 0.00 0.00 0.00 3.24
638 1101 6.262944 TCACATGTCCCAATGCAATATAAGTC 59.737 38.462 0.00 0.00 0.00 3.01
639 1102 6.128486 TCACATGTCCCAATGCAATATAAGT 58.872 36.000 0.00 0.00 0.00 2.24
640 1103 6.638096 TCACATGTCCCAATGCAATATAAG 57.362 37.500 0.00 0.00 0.00 1.73
641 1104 6.550481 ACATCACATGTCCCAATGCAATATAA 59.450 34.615 0.00 0.00 39.92 0.98
642 1105 6.069994 ACATCACATGTCCCAATGCAATATA 58.930 36.000 0.00 0.00 39.92 0.86
643 1106 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
644 1107 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
645 1108 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
646 1109 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
647 1110 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
648 1111 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
649 1112 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
650 1113 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
651 1114 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
652 1115 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
653 1116 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
654 1117 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
655 1118 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
657 1120 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
658 1121 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
659 1122 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
660 1123 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
672 1135 9.965902 AGGTAGTTACAGTAACTTAGCTAGTTA 57.034 33.333 27.29 6.94 46.27 2.24
673 1136 8.876303 AGGTAGTTACAGTAACTTAGCTAGTT 57.124 34.615 27.29 6.34 46.27 2.24
674 1137 8.328014 AGAGGTAGTTACAGTAACTTAGCTAGT 58.672 37.037 27.29 15.69 46.27 2.57
675 1138 8.735692 AGAGGTAGTTACAGTAACTTAGCTAG 57.264 38.462 27.29 0.00 46.27 3.42
676 1139 8.547173 AGAGAGGTAGTTACAGTAACTTAGCTA 58.453 37.037 27.29 9.61 46.27 3.32
677 1140 7.404481 AGAGAGGTAGTTACAGTAACTTAGCT 58.596 38.462 27.29 23.98 46.27 3.32
678 1141 7.201723 GGAGAGAGGTAGTTACAGTAACTTAGC 60.202 44.444 27.29 20.81 46.27 3.09
679 1142 8.048514 AGGAGAGAGGTAGTTACAGTAACTTAG 58.951 40.741 27.29 0.00 46.27 2.18
680 1143 7.926705 AGGAGAGAGGTAGTTACAGTAACTTA 58.073 38.462 27.29 12.99 46.27 2.24
681 1144 6.792424 AGGAGAGAGGTAGTTACAGTAACTT 58.208 40.000 27.29 12.68 46.27 2.66
683 1146 6.179040 TGAGGAGAGAGGTAGTTACAGTAAC 58.821 44.000 14.76 14.76 38.94 2.50
684 1147 6.384342 TGAGGAGAGAGGTAGTTACAGTAA 57.616 41.667 0.00 0.00 0.00 2.24
685 1148 6.578313 ATGAGGAGAGAGGTAGTTACAGTA 57.422 41.667 0.00 0.00 0.00 2.74
686 1149 4.931027 TGAGGAGAGAGGTAGTTACAGT 57.069 45.455 0.00 0.00 0.00 3.55
687 1150 7.558444 AGTTAATGAGGAGAGAGGTAGTTACAG 59.442 40.741 0.00 0.00 0.00 2.74
688 1151 7.411808 AGTTAATGAGGAGAGAGGTAGTTACA 58.588 38.462 0.00 0.00 0.00 2.41
689 1152 7.556996 TGAGTTAATGAGGAGAGAGGTAGTTAC 59.443 40.741 0.00 0.00 0.00 2.50
690 1153 7.640313 TGAGTTAATGAGGAGAGAGGTAGTTA 58.360 38.462 0.00 0.00 0.00 2.24
691 1154 6.494952 TGAGTTAATGAGGAGAGAGGTAGTT 58.505 40.000 0.00 0.00 0.00 2.24
692 1155 6.080969 TGAGTTAATGAGGAGAGAGGTAGT 57.919 41.667 0.00 0.00 0.00 2.73
693 1156 7.432869 CAATGAGTTAATGAGGAGAGAGGTAG 58.567 42.308 0.00 0.00 0.00 3.18
694 1157 6.183360 GCAATGAGTTAATGAGGAGAGAGGTA 60.183 42.308 0.00 0.00 0.00 3.08
695 1158 5.396213 GCAATGAGTTAATGAGGAGAGAGGT 60.396 44.000 0.00 0.00 0.00 3.85
696 1159 5.055812 GCAATGAGTTAATGAGGAGAGAGG 58.944 45.833 0.00 0.00 0.00 3.69
697 1160 5.055812 GGCAATGAGTTAATGAGGAGAGAG 58.944 45.833 0.00 0.00 0.00 3.20
698 1161 4.471025 TGGCAATGAGTTAATGAGGAGAGA 59.529 41.667 0.00 0.00 0.00 3.10
699 1162 4.574013 GTGGCAATGAGTTAATGAGGAGAG 59.426 45.833 0.00 0.00 0.00 3.20
700 1163 4.019411 TGTGGCAATGAGTTAATGAGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
701 1164 4.264253 TGTGGCAATGAGTTAATGAGGAG 58.736 43.478 0.00 0.00 0.00 3.69
702 1165 4.299586 TGTGGCAATGAGTTAATGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
703 1166 6.698008 TTATGTGGCAATGAGTTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
704 1167 6.183360 TGCTTATGTGGCAATGAGTTAATGAG 60.183 38.462 0.00 0.00 36.71 2.90
705 1168 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
706 1169 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
707 1170 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
708 1171 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
709 1172 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
710 1173 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
711 1174 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
712 1175 6.102006 CAAATTTGCTTATGTGGCAATGAG 57.898 37.500 5.01 0.00 46.81 2.90
728 1191 7.246311 ACATCGAGTCTAATTCAGCAAATTTG 58.754 34.615 14.03 14.03 38.53 2.32
729 1192 7.383102 ACATCGAGTCTAATTCAGCAAATTT 57.617 32.000 2.86 0.00 38.53 1.82
730 1193 6.992063 ACATCGAGTCTAATTCAGCAAATT 57.008 33.333 0.00 3.07 40.67 1.82
731 1194 6.992063 AACATCGAGTCTAATTCAGCAAAT 57.008 33.333 0.00 0.00 0.00 2.32
732 1195 7.063426 CAGTAACATCGAGTCTAATTCAGCAAA 59.937 37.037 0.00 0.00 0.00 3.68
733 1196 6.531594 CAGTAACATCGAGTCTAATTCAGCAA 59.468 38.462 0.00 0.00 0.00 3.91
734 1197 6.036470 CAGTAACATCGAGTCTAATTCAGCA 58.964 40.000 0.00 0.00 0.00 4.41
735 1198 5.051374 GCAGTAACATCGAGTCTAATTCAGC 60.051 44.000 0.00 0.00 0.00 4.26
736 1199 6.198029 CAGCAGTAACATCGAGTCTAATTCAG 59.802 42.308 0.00 0.00 0.00 3.02
737 1200 6.036470 CAGCAGTAACATCGAGTCTAATTCA 58.964 40.000 0.00 0.00 0.00 2.57
738 1201 6.266323 TCAGCAGTAACATCGAGTCTAATTC 58.734 40.000 0.00 0.00 0.00 2.17
739 1202 6.208988 TCAGCAGTAACATCGAGTCTAATT 57.791 37.500 0.00 0.00 0.00 1.40
740 1203 5.836821 TCAGCAGTAACATCGAGTCTAAT 57.163 39.130 0.00 0.00 0.00 1.73
741 1204 5.183331 ACTTCAGCAGTAACATCGAGTCTAA 59.817 40.000 0.00 0.00 31.97 2.10
742 1205 4.700692 ACTTCAGCAGTAACATCGAGTCTA 59.299 41.667 0.00 0.00 31.97 2.59
743 1206 3.508012 ACTTCAGCAGTAACATCGAGTCT 59.492 43.478 0.00 0.00 31.97 3.24
744 1207 3.839293 ACTTCAGCAGTAACATCGAGTC 58.161 45.455 0.00 0.00 31.97 3.36
745 1208 3.944055 ACTTCAGCAGTAACATCGAGT 57.056 42.857 0.00 0.00 31.97 4.18
746 1209 5.403246 AGTAACTTCAGCAGTAACATCGAG 58.597 41.667 0.00 0.00 32.94 4.04
747 1210 5.386958 AGTAACTTCAGCAGTAACATCGA 57.613 39.130 0.00 0.00 32.94 3.59
748 1211 4.563184 GGAGTAACTTCAGCAGTAACATCG 59.437 45.833 0.00 0.00 32.94 3.84
749 1212 4.870991 GGGAGTAACTTCAGCAGTAACATC 59.129 45.833 0.00 0.00 32.94 3.06
750 1213 4.286032 TGGGAGTAACTTCAGCAGTAACAT 59.714 41.667 0.00 0.00 32.94 2.71
751 1214 3.644265 TGGGAGTAACTTCAGCAGTAACA 59.356 43.478 0.00 0.00 32.94 2.41
752 1215 3.995048 GTGGGAGTAACTTCAGCAGTAAC 59.005 47.826 0.00 0.00 32.94 2.50
753 1216 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
754 1217 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
755 1218 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
756 1219 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
757 1220 2.047061 ACAGTGGGAGTAACTTCAGCA 58.953 47.619 0.00 0.00 0.00 4.41
758 1221 2.417719 CACAGTGGGAGTAACTTCAGC 58.582 52.381 0.00 0.00 0.00 4.26
759 1222 2.417719 GCACAGTGGGAGTAACTTCAG 58.582 52.381 0.00 0.00 0.00 3.02
760 1223 1.071699 GGCACAGTGGGAGTAACTTCA 59.928 52.381 0.00 0.00 0.00 3.02
761 1224 1.348036 AGGCACAGTGGGAGTAACTTC 59.652 52.381 0.00 0.00 0.00 3.01
762 1225 1.435256 AGGCACAGTGGGAGTAACTT 58.565 50.000 0.00 0.00 0.00 2.66
763 1226 2.180276 CTAGGCACAGTGGGAGTAACT 58.820 52.381 0.00 0.00 0.00 2.24
764 1227 1.900486 ACTAGGCACAGTGGGAGTAAC 59.100 52.381 0.00 0.00 0.00 2.50
765 1228 2.176889 GACTAGGCACAGTGGGAGTAA 58.823 52.381 0.00 0.00 0.00 2.24
766 1229 1.358103 AGACTAGGCACAGTGGGAGTA 59.642 52.381 0.00 0.00 0.00 2.59
767 1230 0.115349 AGACTAGGCACAGTGGGAGT 59.885 55.000 0.00 0.00 0.00 3.85
768 1231 0.534412 CAGACTAGGCACAGTGGGAG 59.466 60.000 0.00 0.00 0.00 4.30
769 1232 0.114364 TCAGACTAGGCACAGTGGGA 59.886 55.000 0.00 0.00 0.00 4.37
770 1233 0.534412 CTCAGACTAGGCACAGTGGG 59.466 60.000 0.00 0.00 0.00 4.61
771 1234 1.203523 GACTCAGACTAGGCACAGTGG 59.796 57.143 4.20 0.00 0.00 4.00
772 1235 1.203523 GGACTCAGACTAGGCACAGTG 59.796 57.143 4.20 0.00 0.00 3.66
773 1236 1.076350 AGGACTCAGACTAGGCACAGT 59.924 52.381 0.00 0.00 0.00 3.55
774 1237 1.846007 AGGACTCAGACTAGGCACAG 58.154 55.000 0.00 0.00 0.00 3.66
775 1238 2.310779 AAGGACTCAGACTAGGCACA 57.689 50.000 0.00 0.00 0.00 4.57
776 1239 3.622630 TCTAAGGACTCAGACTAGGCAC 58.377 50.000 0.00 0.00 0.00 5.01
777 1240 4.317530 TTCTAAGGACTCAGACTAGGCA 57.682 45.455 0.00 0.00 0.00 4.75
778 1241 7.231722 TCAATATTCTAAGGACTCAGACTAGGC 59.768 40.741 0.00 0.00 0.00 3.93
779 1242 8.698973 TCAATATTCTAAGGACTCAGACTAGG 57.301 38.462 0.00 0.00 0.00 3.02
780 1243 9.567776 TCTCAATATTCTAAGGACTCAGACTAG 57.432 37.037 0.00 0.00 0.00 2.57
781 1244 9.922477 TTCTCAATATTCTAAGGACTCAGACTA 57.078 33.333 0.00 0.00 0.00 2.59
782 1245 8.830915 TTCTCAATATTCTAAGGACTCAGACT 57.169 34.615 0.00 0.00 0.00 3.24
783 1246 7.651704 GCTTCTCAATATTCTAAGGACTCAGAC 59.348 40.741 0.00 0.00 0.00 3.51
784 1247 7.563188 AGCTTCTCAATATTCTAAGGACTCAGA 59.437 37.037 0.00 0.00 0.00 3.27
785 1248 7.652909 CAGCTTCTCAATATTCTAAGGACTCAG 59.347 40.741 0.00 0.00 0.00 3.35
786 1249 7.343057 TCAGCTTCTCAATATTCTAAGGACTCA 59.657 37.037 0.00 0.00 0.00 3.41
787 1250 7.651704 GTCAGCTTCTCAATATTCTAAGGACTC 59.348 40.741 0.00 0.00 0.00 3.36
788 1251 7.418483 GGTCAGCTTCTCAATATTCTAAGGACT 60.418 40.741 0.00 0.00 0.00 3.85
789 1252 6.704050 GGTCAGCTTCTCAATATTCTAAGGAC 59.296 42.308 0.00 0.00 0.00 3.85
804 1268 0.252467 AGGCAGGTAGGTCAGCTTCT 60.252 55.000 0.00 0.00 30.72 2.85
980 1464 0.390472 GAACCTGAGAGAAGCGGGTG 60.390 60.000 0.00 0.00 44.08 4.61
1018 1508 1.283321 GGAGGGGATGGAGATTATGGC 59.717 57.143 0.00 0.00 0.00 4.40
1061 1559 3.248630 GAGCGAGATCGAGGAGCGG 62.249 68.421 6.39 0.00 43.02 5.52
1076 1602 1.882167 GCTGTCGCCATGAGAGAGC 60.882 63.158 18.89 18.89 45.40 4.09
1382 1960 3.099211 ATGCGCTTCGAGCCCAGAT 62.099 57.895 9.73 0.00 38.18 2.90
1450 2055 4.086178 GTGCTGCTGCGACTGCTG 62.086 66.667 11.21 9.53 43.34 4.41
1506 2114 3.063084 GTGGAGACGGCGGAGAGT 61.063 66.667 13.24 0.00 0.00 3.24
1541 2149 7.867305 TGATTTGTTTACTGGTACTTGTTGA 57.133 32.000 0.00 0.00 0.00 3.18
1543 2151 7.148205 ACGTTGATTTGTTTACTGGTACTTGTT 60.148 33.333 0.00 0.00 0.00 2.83
1548 2156 5.175491 TCGACGTTGATTTGTTTACTGGTAC 59.825 40.000 0.00 0.00 0.00 3.34
1594 2202 9.778741 TCAAAACTCAGAAACATCTAACTGTAT 57.221 29.630 0.00 0.00 0.00 2.29
1610 2218 5.473039 GGATCAAATTGGGTCAAAACTCAG 58.527 41.667 0.00 0.00 37.15 3.35
1632 2266 2.579873 AGCAAAATGGATCAGATCGGG 58.420 47.619 4.23 0.00 0.00 5.14
1637 2271 3.782523 AGGAGGTAGCAAAATGGATCAGA 59.217 43.478 0.00 0.00 0.00 3.27
1644 2278 4.394300 CACAAGAGAGGAGGTAGCAAAATG 59.606 45.833 0.00 0.00 0.00 2.32
1649 2283 2.310779 ACACAAGAGAGGAGGTAGCA 57.689 50.000 0.00 0.00 0.00 3.49
1696 2410 1.529865 GTTTTACACCACGGAGAGCAC 59.470 52.381 0.00 0.00 0.00 4.40
1728 2442 6.093404 CCGCTCATGTAGTTATATCGAACAT 58.907 40.000 0.00 0.00 0.00 2.71
1730 2444 4.857588 CCCGCTCATGTAGTTATATCGAAC 59.142 45.833 0.00 0.00 0.00 3.95
1749 2486 5.505654 CCATGTGTCTCAATTTATAACCCGC 60.506 44.000 0.00 0.00 0.00 6.13
1751 2488 7.122055 TGAACCATGTGTCTCAATTTATAACCC 59.878 37.037 0.00 0.00 0.00 4.11
1752 2489 8.050778 TGAACCATGTGTCTCAATTTATAACC 57.949 34.615 0.00 0.00 0.00 2.85
1785 2528 1.241315 CCGCCACGGGTCAAAGAATT 61.241 55.000 0.00 0.00 44.15 2.17
1787 2530 2.281208 CCGCCACGGGTCAAAGAA 60.281 61.111 0.00 0.00 44.15 2.52
1801 2544 2.029221 GACGGATAAGCCTCCCGC 59.971 66.667 0.00 0.00 46.54 6.13
1836 2579 0.658536 GAAGCAGAACTGTGTTGCGC 60.659 55.000 0.00 0.00 42.47 6.09
1845 2588 2.926778 ACAGAAGCAGAAGCAGAACT 57.073 45.000 0.00 0.00 45.49 3.01
1846 2589 3.304324 GGAAACAGAAGCAGAAGCAGAAC 60.304 47.826 0.00 0.00 45.49 3.01
1907 2679 2.761195 CGAGACGCCACCGATCTCA 61.761 63.158 12.47 0.00 39.43 3.27
1978 2756 3.423154 GTGTTTCGCCTCGCCTGG 61.423 66.667 0.00 0.00 0.00 4.45
2012 2793 7.688372 TCATGAAAATTCTACAGAAATCTCGC 58.312 34.615 0.00 0.00 37.61 5.03
2021 2802 8.065557 TCGATTCGATCATGAAAATTCTACAG 57.934 34.615 4.29 0.00 0.00 2.74
2051 2833 4.691216 AGGAAGAAGAAAAATCTCGGTTCG 59.309 41.667 0.00 0.00 0.00 3.95
2056 2838 7.385205 TCACAACTAGGAAGAAGAAAAATCTCG 59.615 37.037 0.00 0.00 0.00 4.04
2126 2917 1.804151 CGCAAGTTCGGAAATTGGAGA 59.196 47.619 26.24 0.00 0.00 3.71
2133 2926 1.002900 CTTCTTGCGCAAGTTCGGAAA 60.003 47.619 40.37 27.81 39.18 3.13
2135 2928 0.249699 TCTTCTTGCGCAAGTTCGGA 60.250 50.000 40.37 30.00 39.38 4.55
2137 2930 1.460743 TCATCTTCTTGCGCAAGTTCG 59.539 47.619 40.37 29.93 39.38 3.95
2165 2958 2.788191 AAGGTAGCCAGCTGTGCGAC 62.788 60.000 22.81 22.81 34.14 5.19
2229 3069 2.910688 ACTGACAAGTACTGGTGTGG 57.089 50.000 7.90 0.13 33.79 4.17
2237 3077 5.233988 AGATGAGAGCAAACTGACAAGTAC 58.766 41.667 0.00 0.00 34.77 2.73
2238 3078 5.473931 GAGATGAGAGCAAACTGACAAGTA 58.526 41.667 0.00 0.00 34.77 2.24
2243 3083 2.235898 AGGGAGATGAGAGCAAACTGAC 59.764 50.000 0.00 0.00 0.00 3.51
2326 3173 6.148480 GCTAGAGATGATTTTTGTGTGTGTCT 59.852 38.462 0.00 0.00 0.00 3.41
2327 3174 6.073058 TGCTAGAGATGATTTTTGTGTGTGTC 60.073 38.462 0.00 0.00 0.00 3.67
2329 3176 6.245115 TGCTAGAGATGATTTTTGTGTGTG 57.755 37.500 0.00 0.00 0.00 3.82
2330 3177 6.883217 AGATGCTAGAGATGATTTTTGTGTGT 59.117 34.615 0.00 0.00 0.00 3.72
2331 3178 7.317842 AGATGCTAGAGATGATTTTTGTGTG 57.682 36.000 0.00 0.00 0.00 3.82
2332 3179 7.828223 AGAAGATGCTAGAGATGATTTTTGTGT 59.172 33.333 0.00 0.00 0.00 3.72
2333 3180 8.123575 CAGAAGATGCTAGAGATGATTTTTGTG 58.876 37.037 0.00 0.00 0.00 3.33
2334 3181 7.828223 ACAGAAGATGCTAGAGATGATTTTTGT 59.172 33.333 0.00 0.00 0.00 2.83
2335 3182 8.211116 ACAGAAGATGCTAGAGATGATTTTTG 57.789 34.615 0.00 0.00 0.00 2.44
2336 3183 8.804912 AACAGAAGATGCTAGAGATGATTTTT 57.195 30.769 0.00 0.00 0.00 1.94
2337 3184 8.045507 TGAACAGAAGATGCTAGAGATGATTTT 58.954 33.333 0.00 0.00 0.00 1.82
2338 3185 7.563020 TGAACAGAAGATGCTAGAGATGATTT 58.437 34.615 0.00 0.00 0.00 2.17
2339 3186 7.069702 TCTGAACAGAAGATGCTAGAGATGATT 59.930 37.037 1.79 0.00 33.91 2.57
2351 3198 2.414481 CAGCGGTTCTGAACAGAAGATG 59.586 50.000 22.00 14.13 46.93 2.90
2572 3567 2.811873 GCAAGAGAGTTTCTTCTGCCCA 60.812 50.000 0.00 0.00 44.34 5.36
2574 3569 1.809547 GGCAAGAGAGTTTCTTCTGCC 59.190 52.381 9.87 9.87 44.34 4.85
2613 3614 0.037790 GGTGACTCTGCACTGACTCC 60.038 60.000 0.00 0.00 38.78 3.85
2642 3643 3.664025 TTCCGTGCCAGGCAGATCG 62.664 63.158 16.83 15.45 40.08 3.69
2733 3740 1.592400 CCTCGCGTCCTACCTGAACA 61.592 60.000 5.77 0.00 0.00 3.18
2734 3741 1.139095 CCTCGCGTCCTACCTGAAC 59.861 63.158 5.77 0.00 0.00 3.18
2735 3742 2.050350 CCCTCGCGTCCTACCTGAA 61.050 63.158 5.77 0.00 0.00 3.02
2736 3743 2.439701 CCCTCGCGTCCTACCTGA 60.440 66.667 5.77 0.00 0.00 3.86
2737 3744 4.208686 GCCCTCGCGTCCTACCTG 62.209 72.222 5.77 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.