Multiple sequence alignment - TraesCS6A01G364700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G364700 chr6A 100.000 2342 0 0 1 2342 593283624 593285965 0.000000e+00 4325.0
1 TraesCS6A01G364700 chr6A 91.121 1926 112 21 88 1982 593234517 593236414 0.000000e+00 2555.0
2 TraesCS6A01G364700 chr6A 92.784 873 28 16 797 1664 593237253 593238095 0.000000e+00 1230.0
3 TraesCS6A01G364700 chr6A 84.683 679 82 12 508 1174 593297060 593297728 0.000000e+00 658.0
4 TraesCS6A01G364700 chr6A 90.040 502 23 4 298 799 593236656 593237130 1.980000e-175 625.0
5 TraesCS6A01G364700 chr6A 87.311 331 35 5 1785 2111 593238633 593238960 2.840000e-99 372.0
6 TraesCS6A01G364700 chr6A 80.816 245 22 14 1785 2022 593234219 593234445 4.000000e-38 169.0
7 TraesCS6A01G364700 chr6A 85.811 148 21 0 1208 1355 593233228 593233375 8.660000e-35 158.0
8 TraesCS6A01G364700 chr6A 94.366 71 4 0 182 252 593236588 593236658 2.460000e-20 110.0
9 TraesCS6A01G364700 chr6A 95.122 41 2 0 2 42 45754089 45754129 5.400000e-07 65.8
10 TraesCS6A01G364700 chr6D 92.628 1655 91 14 294 1933 446476526 446478164 0.000000e+00 2351.0
11 TraesCS6A01G364700 chr6D 95.808 167 6 1 84 250 446463421 446463586 3.840000e-68 268.0
12 TraesCS6A01G364700 chr6D 75.406 431 73 22 1208 1617 446462128 446462546 6.650000e-41 178.0
13 TraesCS6A01G364700 chr6D 80.889 225 22 11 1804 2023 446463136 446463344 8.660000e-35 158.0
14 TraesCS6A01G364700 chr6D 87.912 91 8 1 2111 2198 446479398 446479488 1.140000e-18 104.0
15 TraesCS6A01G364700 chrUn 91.921 1510 80 20 162 1664 79273003 79274477 0.000000e+00 2074.0
16 TraesCS6A01G364700 chrUn 91.921 1510 81 19 162 1664 79304667 79306142 0.000000e+00 2074.0
17 TraesCS6A01G364700 chrUn 92.314 1275 64 15 397 1664 79246569 79247816 0.000000e+00 1781.0
18 TraesCS6A01G364700 chrUn 89.367 442 18 12 1227 1664 79240016 79240432 1.590000e-146 529.0
19 TraesCS6A01G364700 chrUn 90.094 212 17 4 195 403 79246272 79246482 2.970000e-69 272.0
20 TraesCS6A01G364700 chrUn 90.099 101 10 0 162 262 477996427 477996527 5.250000e-27 132.0
21 TraesCS6A01G364700 chrUn 95.833 72 3 0 16 87 79245886 79245957 1.470000e-22 117.0
22 TraesCS6A01G364700 chrUn 90.110 91 6 1 2111 2198 79250204 79250294 5.290000e-22 115.0
23 TraesCS6A01G364700 chrUn 89.011 91 7 1 2111 2198 79280882 79280972 2.460000e-20 110.0
24 TraesCS6A01G364700 chrUn 89.011 91 7 1 2111 2198 79312562 79312652 2.460000e-20 110.0
25 TraesCS6A01G364700 chrUn 98.333 60 1 0 28 87 79272634 79272693 3.180000e-19 106.0
26 TraesCS6A01G364700 chrUn 98.333 60 1 0 28 87 79304298 79304357 3.180000e-19 106.0
27 TraesCS6A01G364700 chrUn 98.333 60 1 0 28 87 479190474 479190533 3.180000e-19 106.0
28 TraesCS6A01G364700 chrUn 93.548 62 3 1 1786 1846 79244886 79244947 8.910000e-15 91.6
29 TraesCS6A01G364700 chr6B 89.718 1381 90 22 298 1664 674841859 674843201 0.000000e+00 1716.0
30 TraesCS6A01G364700 chr6B 93.870 832 46 3 397 1225 674927355 674928184 0.000000e+00 1249.0
31 TraesCS6A01G364700 chr6B 82.319 690 82 24 492 1174 674918497 674919153 1.570000e-156 562.0
32 TraesCS6A01G364700 chr6B 90.094 212 17 4 195 403 674927058 674927268 2.970000e-69 272.0
33 TraesCS6A01G364700 chr6B 81.356 236 24 9 1790 2023 674841432 674841649 8.600000e-40 174.0
34 TraesCS6A01G364700 chr6B 90.984 122 11 0 1888 2009 674843643 674843764 5.180000e-37 165.0
35 TraesCS6A01G364700 chr6B 92.174 115 9 0 1785 1899 674843491 674843605 1.860000e-36 163.0
36 TraesCS6A01G364700 chr6B 95.833 72 3 0 16 87 674926672 674926743 1.470000e-22 117.0
37 TraesCS6A01G364700 chr6B 95.000 60 3 0 28 87 674841564 674841623 6.890000e-16 95.3
38 TraesCS6A01G364700 chr6B 93.548 62 3 1 1786 1846 674925672 674925733 8.910000e-15 91.6
39 TraesCS6A01G364700 chr6B 95.000 40 2 0 2 41 498419821 498419860 1.940000e-06 63.9
40 TraesCS6A01G364700 chr6B 89.362 47 3 2 2 46 239360466 239360512 9.040000e-05 58.4
41 TraesCS6A01G364700 chr1D 97.561 41 0 1 1 41 464736258 464736219 4.180000e-08 69.4
42 TraesCS6A01G364700 chr7A 95.000 40 0 1 2 41 8939348 8939311 6.990000e-06 62.1
43 TraesCS6A01G364700 chr4D 94.872 39 2 0 2 40 160742288 160742250 6.990000e-06 62.1
44 TraesCS6A01G364700 chr2A 88.235 51 2 4 2 52 57865418 57865372 9.040000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G364700 chr6A 593283624 593285965 2341 False 4325.000000 4325 100.000000 1 2342 1 chr6A.!!$F2 2341
1 TraesCS6A01G364700 chr6A 593233228 593238960 5732 False 745.571429 2555 88.892714 88 2111 7 chr6A.!!$F4 2023
2 TraesCS6A01G364700 chr6A 593297060 593297728 668 False 658.000000 658 84.683000 508 1174 1 chr6A.!!$F3 666
3 TraesCS6A01G364700 chr6D 446476526 446479488 2962 False 1227.500000 2351 90.270000 294 2198 2 chr6D.!!$F2 1904
4 TraesCS6A01G364700 chr6D 446462128 446463586 1458 False 201.333333 268 84.034333 84 2023 3 chr6D.!!$F1 1939
5 TraesCS6A01G364700 chrUn 79272634 79274477 1843 False 1090.000000 2074 95.127000 28 1664 2 chrUn.!!$F7 1636
6 TraesCS6A01G364700 chrUn 79304298 79306142 1844 False 1090.000000 2074 95.127000 28 1664 2 chrUn.!!$F8 1636
7 TraesCS6A01G364700 chrUn 79244886 79250294 5408 False 475.320000 1781 92.379800 16 2198 5 chrUn.!!$F6 2182
8 TraesCS6A01G364700 chr6B 674918497 674919153 656 False 562.000000 562 82.319000 492 1174 1 chr6B.!!$F3 682
9 TraesCS6A01G364700 chr6B 674841432 674843764 2332 False 462.660000 1716 89.846400 28 2023 5 chr6B.!!$F4 1995
10 TraesCS6A01G364700 chr6B 674925672 674928184 2512 False 432.400000 1249 93.336250 16 1846 4 chr6B.!!$F5 1830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 1067 1.202348 GGCAAGGATAAGTGTTGGCAC 59.798 52.381 3.26 0.0 44.06 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 6007 1.002868 GCTGACTGGGACATGCACT 60.003 57.895 0.0 0.0 38.2 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 1019 1.676746 CGAACGGAGGGAGTAGATGA 58.323 55.000 0.00 0.00 0.00 2.92
35 1021 2.623889 CGAACGGAGGGAGTAGATGATT 59.376 50.000 0.00 0.00 0.00 2.57
36 1022 3.551046 CGAACGGAGGGAGTAGATGATTG 60.551 52.174 0.00 0.00 0.00 2.67
38 1024 3.850752 ACGGAGGGAGTAGATGATTGAT 58.149 45.455 0.00 0.00 0.00 2.57
41 1027 4.281941 CGGAGGGAGTAGATGATTGATTGA 59.718 45.833 0.00 0.00 0.00 2.57
42 1028 5.566429 CGGAGGGAGTAGATGATTGATTGAG 60.566 48.000 0.00 0.00 0.00 3.02
43 1029 5.226194 AGGGAGTAGATGATTGATTGAGC 57.774 43.478 0.00 0.00 0.00 4.26
46 1032 6.556495 AGGGAGTAGATGATTGATTGAGCTTA 59.444 38.462 0.00 0.00 0.00 3.09
49 1035 7.065120 AGTAGATGATTGATTGAGCTTAGCT 57.935 36.000 6.37 6.37 43.88 3.32
51 1037 8.087750 AGTAGATGATTGATTGAGCTTAGCTAC 58.912 37.037 6.75 1.58 39.88 3.58
52 1038 6.229733 AGATGATTGATTGAGCTTAGCTACC 58.770 40.000 6.75 0.00 39.88 3.18
54 1040 5.994250 TGATTGATTGAGCTTAGCTACCTT 58.006 37.500 6.75 0.00 39.88 3.50
55 1041 6.418101 TGATTGATTGAGCTTAGCTACCTTT 58.582 36.000 6.75 0.00 39.88 3.11
59 1045 3.417069 TGAGCTTAGCTACCTTTTGCA 57.583 42.857 6.75 0.00 39.88 4.08
60 1046 3.750371 TGAGCTTAGCTACCTTTTGCAA 58.250 40.909 6.75 0.00 39.88 4.08
61 1047 3.753272 TGAGCTTAGCTACCTTTTGCAAG 59.247 43.478 6.75 0.00 39.88 4.01
75 1061 2.584835 TGCAAGGCAAGGATAAGTGT 57.415 45.000 0.00 0.00 34.76 3.55
76 1062 2.875296 TGCAAGGCAAGGATAAGTGTT 58.125 42.857 0.00 0.00 34.76 3.32
77 1063 2.557924 TGCAAGGCAAGGATAAGTGTTG 59.442 45.455 0.00 0.00 34.76 3.33
79 1065 1.839424 AGGCAAGGATAAGTGTTGGC 58.161 50.000 0.00 0.00 44.76 4.52
81 1067 1.202348 GGCAAGGATAAGTGTTGGCAC 59.798 52.381 3.26 0.00 44.06 5.01
105 1308 2.326428 AGGAAGAGAGGGTCGACAAAA 58.674 47.619 18.91 0.00 0.00 2.44
206 1600 6.721318 ACTCCAGTATTCAGCCAGAAATAAA 58.279 36.000 0.00 0.00 40.22 1.40
241 1635 7.574030 GCCATGTTGTATATTGTGTGTGTTGTA 60.574 37.037 0.00 0.00 0.00 2.41
255 1651 4.277672 GTGTGTTGTACTCTCTGGTACTCA 59.722 45.833 0.00 3.82 41.64 3.41
262 1658 2.040012 ACTCTCTGGTACTCACTCCGAA 59.960 50.000 0.00 0.00 0.00 4.30
264 1660 2.040012 TCTCTGGTACTCACTCCGAACT 59.960 50.000 0.00 0.00 0.00 3.01
265 1661 3.262660 TCTCTGGTACTCACTCCGAACTA 59.737 47.826 0.00 0.00 0.00 2.24
270 1666 5.717119 TGGTACTCACTCCGAACTAAAATC 58.283 41.667 0.00 0.00 0.00 2.17
272 1668 5.575995 GGTACTCACTCCGAACTAAAATCAC 59.424 44.000 0.00 0.00 0.00 3.06
273 1669 4.235360 ACTCACTCCGAACTAAAATCACG 58.765 43.478 0.00 0.00 0.00 4.35
274 1670 4.022589 ACTCACTCCGAACTAAAATCACGA 60.023 41.667 0.00 0.00 0.00 4.35
280 1678 4.446385 TCCGAACTAAAATCACGACACTTG 59.554 41.667 0.00 0.00 0.00 3.16
330 1729 8.038862 AGTTCAAACAGGACCTATATGATCAT 57.961 34.615 13.81 13.81 0.00 2.45
370 1769 1.678627 ACATGTACAGAGCTAGAGCCG 59.321 52.381 0.00 0.00 43.38 5.52
584 2083 3.023832 AGGAACCAAACACAAGAACCTG 58.976 45.455 0.00 0.00 0.00 4.00
607 2106 2.810852 AGCTTCTTGTGCTTAGCAGTTC 59.189 45.455 7.34 0.00 40.08 3.01
739 2241 7.828223 TGCAAGGACGTACCCTATTAATTAAAA 59.172 33.333 1.21 0.00 40.05 1.52
767 2269 1.576577 TGGCAGTGATCCAGAGACAT 58.423 50.000 0.00 0.00 0.00 3.06
776 2282 4.005650 TGATCCAGAGACATTTTGCACTC 58.994 43.478 0.00 0.00 0.00 3.51
781 2290 4.083431 CCAGAGACATTTTGCACTCAGAAG 60.083 45.833 2.98 0.00 30.42 2.85
794 2303 7.421530 TGCACTCAGAAGTAGTTGTTTAATC 57.578 36.000 0.00 0.00 33.25 1.75
997 4539 8.035448 TCACTGAAGTATACTCTCCATCTAGA 57.965 38.462 5.70 0.00 0.00 2.43
1439 5008 0.109132 GCTGCGCTGCCAAAATTACT 60.109 50.000 26.86 0.00 0.00 2.24
1440 5009 1.669795 GCTGCGCTGCCAAAATTACTT 60.670 47.619 26.86 0.00 0.00 2.24
1441 5010 2.676076 CTGCGCTGCCAAAATTACTTT 58.324 42.857 9.73 0.00 0.00 2.66
1467 5036 6.539649 TGTAAAACTCATGTAAGCTCACAC 57.460 37.500 0.00 0.00 0.00 3.82
1468 5037 6.288294 TGTAAAACTCATGTAAGCTCACACT 58.712 36.000 0.00 0.00 0.00 3.55
1469 5038 5.679734 AAAACTCATGTAAGCTCACACTG 57.320 39.130 0.00 0.00 0.00 3.66
1470 5039 4.342862 AACTCATGTAAGCTCACACTGT 57.657 40.909 0.00 0.00 0.00 3.55
1471 5040 3.919216 ACTCATGTAAGCTCACACTGTC 58.081 45.455 0.00 0.00 0.00 3.51
1472 5041 3.321968 ACTCATGTAAGCTCACACTGTCA 59.678 43.478 0.00 0.00 0.00 3.58
1473 5042 3.653344 TCATGTAAGCTCACACTGTCAC 58.347 45.455 0.00 0.00 0.00 3.67
1474 5043 3.069443 TCATGTAAGCTCACACTGTCACA 59.931 43.478 0.00 0.00 0.00 3.58
1523 5101 4.764308 TGTGCTAACATTCTTGGCAATACA 59.236 37.500 0.00 0.00 34.65 2.29
1546 5135 7.086376 ACAATTTCAAGCAACATATGTGAGTC 58.914 34.615 9.63 2.64 0.00 3.36
1567 5156 0.391661 TTGCCTGCCTCTTGATCGAC 60.392 55.000 0.00 0.00 0.00 4.20
1588 5178 2.031012 TCTCGTGTGGGCTTGCAG 59.969 61.111 0.00 0.00 0.00 4.41
1595 5185 0.251297 TGTGGGCTTGCAGCATTACT 60.251 50.000 0.00 0.00 44.75 2.24
1629 5309 6.289064 AGTTCTCACGATTTTCAGTAACCTT 58.711 36.000 0.00 0.00 0.00 3.50
1672 5500 6.569780 AGAACCACCAATTTGTAACAAGAAC 58.430 36.000 0.00 0.00 0.00 3.01
1691 5591 4.923871 AGAACAACGATGTAGTAGTTGCAG 59.076 41.667 0.00 0.00 44.36 4.41
1692 5592 4.252971 ACAACGATGTAGTAGTTGCAGT 57.747 40.909 0.00 0.00 44.36 4.40
1693 5593 4.628074 ACAACGATGTAGTAGTTGCAGTT 58.372 39.130 0.00 0.00 44.36 3.16
1694 5594 4.447724 ACAACGATGTAGTAGTTGCAGTTG 59.552 41.667 0.00 5.74 44.36 3.16
1696 5596 5.381174 ACGATGTAGTAGTTGCAGTTGTA 57.619 39.130 0.00 0.00 0.00 2.41
1697 5597 5.775686 ACGATGTAGTAGTTGCAGTTGTAA 58.224 37.500 0.00 0.00 0.00 2.41
1701 5601 5.294356 TGTAGTAGTTGCAGTTGTAACCTG 58.706 41.667 9.07 0.00 40.76 4.00
1704 5604 0.313987 GTTGCAGTTGTAACCTGGCC 59.686 55.000 0.00 0.00 35.10 5.36
1705 5605 0.106469 TTGCAGTTGTAACCTGGCCA 60.106 50.000 4.71 4.71 0.00 5.36
1706 5606 0.537143 TGCAGTTGTAACCTGGCCAG 60.537 55.000 26.87 26.87 0.00 4.85
1707 5607 1.866853 GCAGTTGTAACCTGGCCAGC 61.867 60.000 28.39 14.20 0.00 4.85
1730 6003 5.760743 GCTGGAGTTTTTAGAGAGAGTTGTT 59.239 40.000 0.00 0.00 0.00 2.83
1734 6007 8.262227 TGGAGTTTTTAGAGAGAGTTGTTGTAA 58.738 33.333 0.00 0.00 0.00 2.41
1743 6016 4.752101 AGAGAGTTGTTGTAAGTGCATGTC 59.248 41.667 0.00 0.00 0.00 3.06
1895 6219 3.812053 AGCATTTCCGATTCTGCATAGTC 59.188 43.478 0.00 0.00 37.09 2.59
1933 6306 7.040548 TGTTTCTCACACATGCTCAATGATAAA 60.041 33.333 0.00 0.00 38.72 1.40
1958 6491 2.976440 TGATTGATGGGGCTAGCTAGA 58.024 47.619 25.15 3.42 0.00 2.43
2002 6536 8.560374 GGATAAGTGATGTAACTAAAGAATGCC 58.440 37.037 0.00 0.00 0.00 4.40
2011 6549 7.045416 TGTAACTAAAGAATGCCGTACATGAT 58.955 34.615 0.00 0.00 39.60 2.45
2027 6565 3.693085 ACATGATGTTCTCAAGATGGCAC 59.307 43.478 0.00 0.00 37.44 5.01
2031 6569 5.559770 TGATGTTCTCAAGATGGCACTTTA 58.440 37.500 0.00 0.00 0.00 1.85
2034 6573 7.994911 TGATGTTCTCAAGATGGCACTTTATAT 59.005 33.333 0.00 0.00 0.00 0.86
2054 6593 2.569100 AAAAAGGCAGAGGGGGAGT 58.431 52.632 0.00 0.00 0.00 3.85
2055 6594 0.860457 AAAAAGGCAGAGGGGGAGTT 59.140 50.000 0.00 0.00 0.00 3.01
2056 6595 1.755200 AAAAGGCAGAGGGGGAGTTA 58.245 50.000 0.00 0.00 0.00 2.24
2057 6596 1.755200 AAAGGCAGAGGGGGAGTTAA 58.245 50.000 0.00 0.00 0.00 2.01
2058 6597 1.755200 AAGGCAGAGGGGGAGTTAAA 58.245 50.000 0.00 0.00 0.00 1.52
2059 6598 1.987080 AGGCAGAGGGGGAGTTAAAT 58.013 50.000 0.00 0.00 0.00 1.40
2060 6599 3.145559 AGGCAGAGGGGGAGTTAAATA 57.854 47.619 0.00 0.00 0.00 1.40
2061 6600 2.778270 AGGCAGAGGGGGAGTTAAATAC 59.222 50.000 0.00 0.00 0.00 1.89
2095 6643 1.923148 GGGGGAGGAAGGAAGAAATCA 59.077 52.381 0.00 0.00 0.00 2.57
2098 6646 2.649190 GGAGGAAGGAAGAAATCAGCC 58.351 52.381 0.00 0.00 0.00 4.85
2114 6677 3.495331 TCAGCCCATGCAGAAAAACTTA 58.505 40.909 0.00 0.00 41.13 2.24
2115 6678 4.088634 TCAGCCCATGCAGAAAAACTTAT 58.911 39.130 0.00 0.00 41.13 1.73
2169 8723 1.300388 ACGAACGGTGTGTAGCCAC 60.300 57.895 0.00 0.00 42.19 5.01
2186 8740 1.202405 CCACCCTTGTTGTGTTGCTTC 60.202 52.381 0.00 0.00 31.71 3.86
2198 8752 5.483685 TGTGTTGCTTCTATAGGTCTTGT 57.516 39.130 0.00 0.00 0.00 3.16
2199 8753 6.599356 TGTGTTGCTTCTATAGGTCTTGTA 57.401 37.500 0.00 0.00 0.00 2.41
2200 8754 7.182817 TGTGTTGCTTCTATAGGTCTTGTAT 57.817 36.000 0.00 0.00 0.00 2.29
2201 8755 8.301252 TGTGTTGCTTCTATAGGTCTTGTATA 57.699 34.615 0.00 0.00 0.00 1.47
2202 8756 8.414003 TGTGTTGCTTCTATAGGTCTTGTATAG 58.586 37.037 0.00 0.00 33.42 1.31
2203 8757 7.868415 GTGTTGCTTCTATAGGTCTTGTATAGG 59.132 40.741 0.00 0.00 33.10 2.57
2204 8758 7.563924 TGTTGCTTCTATAGGTCTTGTATAGGT 59.436 37.037 0.00 0.00 33.10 3.08
2205 8759 8.422566 GTTGCTTCTATAGGTCTTGTATAGGTT 58.577 37.037 0.00 0.00 33.10 3.50
2206 8760 7.952671 TGCTTCTATAGGTCTTGTATAGGTTG 58.047 38.462 0.00 0.00 33.10 3.77
2207 8761 7.015292 TGCTTCTATAGGTCTTGTATAGGTTGG 59.985 40.741 0.00 0.00 33.10 3.77
2208 8762 7.232941 GCTTCTATAGGTCTTGTATAGGTTGGA 59.767 40.741 0.00 0.00 33.10 3.53
2209 8763 9.315363 CTTCTATAGGTCTTGTATAGGTTGGAT 57.685 37.037 0.00 0.00 33.10 3.41
2210 8764 9.670442 TTCTATAGGTCTTGTATAGGTTGGATT 57.330 33.333 0.00 0.00 33.10 3.01
2211 8765 9.670442 TCTATAGGTCTTGTATAGGTTGGATTT 57.330 33.333 0.00 0.00 33.10 2.17
2247 8801 7.359262 TGTGTGTTCTTTGGTATTTAGATCG 57.641 36.000 0.00 0.00 0.00 3.69
2248 8802 7.156000 TGTGTGTTCTTTGGTATTTAGATCGA 58.844 34.615 0.00 0.00 0.00 3.59
2249 8803 7.658167 TGTGTGTTCTTTGGTATTTAGATCGAA 59.342 33.333 0.00 0.00 0.00 3.71
2250 8804 7.955864 GTGTGTTCTTTGGTATTTAGATCGAAC 59.044 37.037 0.00 0.00 0.00 3.95
2251 8805 7.658167 TGTGTTCTTTGGTATTTAGATCGAACA 59.342 33.333 0.00 0.00 36.76 3.18
2252 8806 8.500773 GTGTTCTTTGGTATTTAGATCGAACAA 58.499 33.333 0.00 0.00 39.58 2.83
2253 8807 8.500773 TGTTCTTTGGTATTTAGATCGAACAAC 58.499 33.333 0.00 0.00 36.35 3.32
2254 8808 8.500773 GTTCTTTGGTATTTAGATCGAACAACA 58.499 33.333 0.00 0.00 0.00 3.33
2255 8809 8.786826 TCTTTGGTATTTAGATCGAACAACAT 57.213 30.769 0.00 0.00 0.00 2.71
2256 8810 8.879759 TCTTTGGTATTTAGATCGAACAACATC 58.120 33.333 0.00 0.00 0.00 3.06
2257 8811 8.786826 TTTGGTATTTAGATCGAACAACATCT 57.213 30.769 0.00 0.00 33.75 2.90
2258 8812 9.878667 TTTGGTATTTAGATCGAACAACATCTA 57.121 29.630 0.00 0.00 31.57 1.98
2302 8856 7.851822 AAAAATAGAACATGTACGCACAAAG 57.148 32.000 0.00 0.00 38.42 2.77
2303 8857 2.969443 AGAACATGTACGCACAAAGC 57.031 45.000 0.00 0.00 38.42 3.51
2304 8858 2.494059 AGAACATGTACGCACAAAGCT 58.506 42.857 0.00 0.00 42.61 3.74
2305 8859 3.659786 AGAACATGTACGCACAAAGCTA 58.340 40.909 0.00 0.00 42.61 3.32
2306 8860 3.679980 AGAACATGTACGCACAAAGCTAG 59.320 43.478 0.00 0.00 42.61 3.42
2307 8861 3.040147 ACATGTACGCACAAAGCTAGT 57.960 42.857 0.00 0.00 42.61 2.57
2308 8862 2.736721 ACATGTACGCACAAAGCTAGTG 59.263 45.455 13.35 13.35 42.61 2.74
2309 8863 2.804697 TGTACGCACAAAGCTAGTGA 57.195 45.000 19.97 0.27 42.61 3.41
2310 8864 2.400399 TGTACGCACAAAGCTAGTGAC 58.600 47.619 19.97 11.33 42.61 3.67
2311 8865 2.223852 TGTACGCACAAAGCTAGTGACA 60.224 45.455 19.97 13.32 42.61 3.58
2312 8866 2.169832 ACGCACAAAGCTAGTGACAT 57.830 45.000 19.97 4.53 42.61 3.06
2313 8867 3.313012 ACGCACAAAGCTAGTGACATA 57.687 42.857 19.97 0.00 42.61 2.29
2314 8868 2.993899 ACGCACAAAGCTAGTGACATAC 59.006 45.455 19.97 4.23 42.61 2.39
2315 8869 3.254060 CGCACAAAGCTAGTGACATACT 58.746 45.455 19.97 0.00 42.61 2.12
2316 8870 3.304559 CGCACAAAGCTAGTGACATACTC 59.695 47.826 19.97 3.06 42.61 2.59
2317 8871 3.619038 GCACAAAGCTAGTGACATACTCC 59.381 47.826 19.97 0.00 40.89 3.85
2318 8872 3.859961 CACAAAGCTAGTGACATACTCCG 59.140 47.826 12.56 0.00 40.89 4.63
2319 8873 3.510360 ACAAAGCTAGTGACATACTCCGT 59.490 43.478 4.40 0.00 40.89 4.69
2320 8874 4.021368 ACAAAGCTAGTGACATACTCCGTT 60.021 41.667 4.40 0.00 40.89 4.44
2321 8875 4.373348 AAGCTAGTGACATACTCCGTTC 57.627 45.455 0.00 0.00 40.89 3.95
2322 8876 2.688958 AGCTAGTGACATACTCCGTTCC 59.311 50.000 0.00 0.00 40.89 3.62
2323 8877 2.426024 GCTAGTGACATACTCCGTTCCA 59.574 50.000 0.00 0.00 40.89 3.53
2324 8878 3.734293 GCTAGTGACATACTCCGTTCCAC 60.734 52.174 0.00 0.00 40.89 4.02
2325 8879 2.244695 AGTGACATACTCCGTTCCACA 58.755 47.619 0.00 0.00 33.17 4.17
2326 8880 2.832129 AGTGACATACTCCGTTCCACAT 59.168 45.455 0.00 0.00 33.17 3.21
2327 8881 2.930040 GTGACATACTCCGTTCCACATG 59.070 50.000 0.00 0.00 0.00 3.21
2328 8882 2.565391 TGACATACTCCGTTCCACATGT 59.435 45.455 0.00 0.00 0.00 3.21
2329 8883 3.007506 TGACATACTCCGTTCCACATGTT 59.992 43.478 0.00 0.00 0.00 2.71
2330 8884 4.000988 GACATACTCCGTTCCACATGTTT 58.999 43.478 0.00 0.00 0.00 2.83
2331 8885 3.751175 ACATACTCCGTTCCACATGTTTG 59.249 43.478 0.00 0.00 0.00 2.93
2332 8886 2.341846 ACTCCGTTCCACATGTTTGT 57.658 45.000 0.00 0.00 36.15 2.83
2333 8887 2.650322 ACTCCGTTCCACATGTTTGTT 58.350 42.857 0.00 0.00 32.34 2.83
2334 8888 2.616842 ACTCCGTTCCACATGTTTGTTC 59.383 45.455 0.00 0.00 32.34 3.18
2335 8889 1.950909 TCCGTTCCACATGTTTGTTCC 59.049 47.619 0.00 0.00 32.34 3.62
2336 8890 1.334599 CCGTTCCACATGTTTGTTCCG 60.335 52.381 0.00 0.00 32.34 4.30
2337 8891 1.332375 CGTTCCACATGTTTGTTCCGT 59.668 47.619 0.00 0.00 32.34 4.69
2338 8892 2.223386 CGTTCCACATGTTTGTTCCGTT 60.223 45.455 0.00 0.00 32.34 4.44
2339 8893 3.368495 GTTCCACATGTTTGTTCCGTTC 58.632 45.455 0.00 0.00 32.34 3.95
2340 8894 2.925724 TCCACATGTTTGTTCCGTTCT 58.074 42.857 0.00 0.00 32.34 3.01
2341 8895 3.283751 TCCACATGTTTGTTCCGTTCTT 58.716 40.909 0.00 0.00 32.34 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3 4 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5 6 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
8 9 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
11 12 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
12 13 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
14 15 1.676746 TCATCTACTCCCTCCGTTCG 58.323 55.000 0.00 0.00 0.00 3.95
15 16 3.637229 TCAATCATCTACTCCCTCCGTTC 59.363 47.826 0.00 0.00 0.00 3.95
16 17 3.643237 TCAATCATCTACTCCCTCCGTT 58.357 45.455 0.00 0.00 0.00 4.44
17 18 3.314307 TCAATCATCTACTCCCTCCGT 57.686 47.619 0.00 0.00 0.00 4.69
33 1019 6.405176 GCAAAAGGTAGCTAAGCTCAATCAAT 60.405 38.462 0.00 0.00 40.44 2.57
35 1021 4.396166 GCAAAAGGTAGCTAAGCTCAATCA 59.604 41.667 0.00 0.00 40.44 2.57
36 1022 4.396166 TGCAAAAGGTAGCTAAGCTCAATC 59.604 41.667 0.00 0.00 40.44 2.67
38 1024 3.750371 TGCAAAAGGTAGCTAAGCTCAA 58.250 40.909 0.00 0.00 40.44 3.02
41 1027 3.084786 CCTTGCAAAAGGTAGCTAAGCT 58.915 45.455 0.00 0.00 43.41 3.74
42 1028 2.416027 GCCTTGCAAAAGGTAGCTAAGC 60.416 50.000 6.32 0.36 42.00 3.09
43 1029 2.819608 TGCCTTGCAAAAGGTAGCTAAG 59.180 45.455 6.32 0.00 42.00 2.18
46 1032 1.703411 TTGCCTTGCAAAAGGTAGCT 58.297 45.000 6.32 0.00 45.96 3.32
55 1041 2.875296 ACACTTATCCTTGCCTTGCAA 58.125 42.857 0.00 0.00 46.80 4.08
59 1045 2.171003 GCCAACACTTATCCTTGCCTT 58.829 47.619 0.00 0.00 0.00 4.35
60 1046 1.075374 TGCCAACACTTATCCTTGCCT 59.925 47.619 0.00 0.00 0.00 4.75
61 1047 1.202348 GTGCCAACACTTATCCTTGCC 59.798 52.381 0.00 0.00 43.85 4.52
62 1048 2.636768 GTGCCAACACTTATCCTTGC 57.363 50.000 0.00 0.00 43.85 4.01
73 1059 3.244561 CCTCTCTTCCTTTAGTGCCAACA 60.245 47.826 0.00 0.00 0.00 3.33
75 1061 2.305927 CCCTCTCTTCCTTTAGTGCCAA 59.694 50.000 0.00 0.00 0.00 4.52
76 1062 1.909302 CCCTCTCTTCCTTTAGTGCCA 59.091 52.381 0.00 0.00 0.00 4.92
77 1063 1.909986 ACCCTCTCTTCCTTTAGTGCC 59.090 52.381 0.00 0.00 0.00 5.01
79 1065 3.090037 TCGACCCTCTCTTCCTTTAGTG 58.910 50.000 0.00 0.00 0.00 2.74
81 1067 3.090037 TGTCGACCCTCTCTTCCTTTAG 58.910 50.000 14.12 0.00 0.00 1.85
82 1068 3.165087 TGTCGACCCTCTCTTCCTTTA 57.835 47.619 14.12 0.00 0.00 1.85
83 1069 2.011122 TGTCGACCCTCTCTTCCTTT 57.989 50.000 14.12 0.00 0.00 3.11
84 1070 2.011122 TTGTCGACCCTCTCTTCCTT 57.989 50.000 14.12 0.00 0.00 3.36
85 1071 2.011122 TTTGTCGACCCTCTCTTCCT 57.989 50.000 14.12 0.00 0.00 3.36
153 1356 6.258068 ACGTTAGCCTGCTTTCTATTGATTAC 59.742 38.462 0.00 0.00 0.00 1.89
160 1396 2.236395 ACCACGTTAGCCTGCTTTCTAT 59.764 45.455 0.00 0.00 0.00 1.98
206 1600 7.172532 CACAATATACAACATGGCCGTAGTATT 59.827 37.037 17.17 8.36 0.00 1.89
241 1635 1.629353 TCGGAGTGAGTACCAGAGAGT 59.371 52.381 0.00 0.00 0.00 3.24
255 1651 3.985925 GTGTCGTGATTTTAGTTCGGAGT 59.014 43.478 0.00 0.00 0.00 3.85
262 1658 5.277154 CGGAAACAAGTGTCGTGATTTTAGT 60.277 40.000 0.00 0.00 0.00 2.24
264 1660 4.809958 TCGGAAACAAGTGTCGTGATTTTA 59.190 37.500 0.00 0.00 0.00 1.52
265 1661 3.623960 TCGGAAACAAGTGTCGTGATTTT 59.376 39.130 0.00 0.00 0.00 1.82
270 1666 1.124297 CGATCGGAAACAAGTGTCGTG 59.876 52.381 7.38 0.00 0.00 4.35
272 1668 0.713883 CCGATCGGAAACAAGTGTCG 59.286 55.000 30.62 0.00 37.50 4.35
273 1669 1.993370 CTCCGATCGGAAACAAGTGTC 59.007 52.381 34.77 0.00 44.66 3.67
274 1670 1.337823 CCTCCGATCGGAAACAAGTGT 60.338 52.381 34.77 0.00 44.66 3.55
280 1678 1.396653 TACTCCCTCCGATCGGAAAC 58.603 55.000 34.77 0.00 44.66 2.78
370 1769 0.676782 ACGTGCTTGGAATGGTAGCC 60.677 55.000 0.00 0.00 34.03 3.93
739 2241 7.446625 GTCTCTGGATCACTGCCATTAATTTAT 59.553 37.037 0.00 0.00 34.33 1.40
767 2269 6.509418 AAACAACTACTTCTGAGTGCAAAA 57.491 33.333 0.00 0.00 36.60 2.44
794 2303 7.041780 GGAGTGGTTTATCAGCAACATATACAG 60.042 40.741 0.00 0.00 33.64 2.74
806 2315 4.021104 TGTCTGTCAGGAGTGGTTTATCAG 60.021 45.833 0.00 0.00 0.00 2.90
997 4539 6.470278 TCTTGTGAGAGATCAATGTCATTGT 58.530 36.000 22.01 11.64 41.02 2.71
1342 4884 6.856895 AGGAAATAAAGAAGAATTTGCTCCG 58.143 36.000 0.00 0.00 38.82 4.63
1440 5009 8.462811 TGTGAGCTTACATGAGTTTTACAAAAA 58.537 29.630 7.32 0.00 0.00 1.94
1441 5010 7.913297 GTGTGAGCTTACATGAGTTTTACAAAA 59.087 33.333 15.05 0.00 32.43 2.44
1468 5037 1.488393 TCATGTTCCCACTGTGTGACA 59.512 47.619 7.08 8.52 35.23 3.58
1469 5038 1.873591 GTCATGTTCCCACTGTGTGAC 59.126 52.381 7.08 8.84 35.23 3.67
1470 5039 1.488393 TGTCATGTTCCCACTGTGTGA 59.512 47.619 7.08 0.00 35.23 3.58
1471 5040 1.965935 TGTCATGTTCCCACTGTGTG 58.034 50.000 7.08 0.00 0.00 3.82
1472 5041 2.957402 ATGTCATGTTCCCACTGTGT 57.043 45.000 7.08 0.00 0.00 3.72
1473 5042 2.679837 GCTATGTCATGTTCCCACTGTG 59.320 50.000 0.00 0.00 0.00 3.66
1474 5043 2.677902 CGCTATGTCATGTTCCCACTGT 60.678 50.000 0.00 0.00 0.00 3.55
1482 5051 3.181507 GCACATCAACGCTATGTCATGTT 60.182 43.478 0.00 0.00 35.39 2.71
1523 5101 6.072508 ACGACTCACATATGTTGCTTGAAATT 60.073 34.615 5.37 0.00 0.00 1.82
1546 5135 1.699656 CGATCAAGAGGCAGGCAACG 61.700 60.000 0.00 0.00 46.39 4.10
1567 5156 1.669115 CAAGCCCACACGAGACTGG 60.669 63.158 0.00 0.00 0.00 4.00
1588 5178 7.463383 CGTGAGAACTTTGTAGATCAGTAATGC 60.463 40.741 0.00 0.00 0.00 3.56
1609 5199 6.363473 GTCAAAGGTTACTGAAAATCGTGAG 58.637 40.000 0.00 0.00 0.00 3.51
1629 5309 2.946990 TCTATATGCAGGTCGTCGTCAA 59.053 45.455 0.00 0.00 0.00 3.18
1672 5500 4.447724 ACAACTGCAACTACTACATCGTTG 59.552 41.667 5.74 5.74 40.59 4.10
1691 5591 1.244019 CCAGCTGGCCAGGTTACAAC 61.244 60.000 34.41 15.26 36.98 3.32
1692 5592 1.074775 CCAGCTGGCCAGGTTACAA 59.925 57.895 34.41 0.00 36.98 2.41
1693 5593 1.841302 CTCCAGCTGGCCAGGTTACA 61.841 60.000 34.41 19.21 36.98 2.41
1694 5594 1.078143 CTCCAGCTGGCCAGGTTAC 60.078 63.158 34.41 17.20 36.98 2.50
1696 5596 2.011617 AAACTCCAGCTGGCCAGGTT 62.012 55.000 34.41 24.18 36.98 3.50
1697 5597 2.011617 AAAACTCCAGCTGGCCAGGT 62.012 55.000 31.61 31.61 40.20 4.00
1701 5601 2.087646 CTCTAAAAACTCCAGCTGGCC 58.912 52.381 28.91 0.00 34.44 5.36
1704 5604 5.146010 ACTCTCTCTAAAAACTCCAGCTG 57.854 43.478 6.78 6.78 0.00 4.24
1705 5605 5.071115 ACAACTCTCTCTAAAAACTCCAGCT 59.929 40.000 0.00 0.00 0.00 4.24
1706 5606 5.301555 ACAACTCTCTCTAAAAACTCCAGC 58.698 41.667 0.00 0.00 0.00 4.85
1707 5607 6.763610 ACAACAACTCTCTCTAAAAACTCCAG 59.236 38.462 0.00 0.00 0.00 3.86
1730 6003 1.696884 TGACTGGGACATGCACTTACA 59.303 47.619 0.00 0.00 38.20 2.41
1734 6007 1.002868 GCTGACTGGGACATGCACT 60.003 57.895 0.00 0.00 38.20 4.40
1743 6016 2.497675 AGTGTACATAGTGCTGACTGGG 59.502 50.000 0.00 0.00 33.21 4.45
1870 6194 3.220507 TGCAGAATCGGAAATGCTTTG 57.779 42.857 11.90 0.00 39.42 2.77
1895 6219 2.744202 GTGAGAAACAGTGGGTGCATAG 59.256 50.000 0.00 0.00 0.00 2.23
1933 6306 4.110072 AGCTAGCCCCATCAATCATCTAT 58.890 43.478 12.13 0.00 0.00 1.98
2002 6536 4.025396 GCCATCTTGAGAACATCATGTACG 60.025 45.833 0.00 0.00 37.89 3.67
2011 6549 9.679661 TTTATATAAAGTGCCATCTTGAGAACA 57.320 29.630 3.71 0.00 0.00 3.18
2050 6589 9.121658 CCCATTTCCTCTTTAGTATTTAACTCC 57.878 37.037 0.00 0.00 39.80 3.85
2052 6591 8.059461 CCCCCATTTCCTCTTTAGTATTTAACT 58.941 37.037 0.00 0.00 42.62 2.24
2053 6592 8.234136 CCCCCATTTCCTCTTTAGTATTTAAC 57.766 38.462 0.00 0.00 0.00 2.01
2080 6628 1.995542 TGGGCTGATTTCTTCCTTCCT 59.004 47.619 0.00 0.00 0.00 3.36
2081 6629 2.514458 TGGGCTGATTTCTTCCTTCC 57.486 50.000 0.00 0.00 0.00 3.46
2085 6633 1.407979 CTGCATGGGCTGATTTCTTCC 59.592 52.381 0.00 0.00 41.06 3.46
2095 6643 4.088634 TGATAAGTTTTTCTGCATGGGCT 58.911 39.130 0.00 0.00 41.91 5.19
2098 6646 4.807304 GCCATGATAAGTTTTTCTGCATGG 59.193 41.667 13.10 13.10 44.61 3.66
2114 6677 1.516110 AGGAGCTAGTTGGCCATGAT 58.484 50.000 6.09 0.00 0.00 2.45
2115 6678 1.065199 CAAGGAGCTAGTTGGCCATGA 60.065 52.381 6.09 0.00 0.00 3.07
2160 8711 0.951558 CACAACAAGGGTGGCTACAC 59.048 55.000 1.52 0.00 46.97 2.90
2163 8714 1.686355 CAACACAACAAGGGTGGCTA 58.314 50.000 0.00 0.00 40.54 3.93
2165 8716 1.227234 GCAACACAACAAGGGTGGC 60.227 57.895 0.00 0.00 44.92 5.01
2169 8723 4.396166 CCTATAGAAGCAACACAACAAGGG 59.604 45.833 0.00 0.00 0.00 3.95
2170 8724 5.003804 ACCTATAGAAGCAACACAACAAGG 58.996 41.667 0.00 0.00 0.00 3.61
2222 8776 7.658167 TCGATCTAAATACCAAAGAACACACAA 59.342 33.333 0.00 0.00 0.00 3.33
2231 8785 8.883731 AGATGTTGTTCGATCTAAATACCAAAG 58.116 33.333 0.00 0.00 0.00 2.77
2278 8832 6.362283 GCTTTGTGCGTACATGTTCTATTTTT 59.638 34.615 7.30 0.00 36.53 1.94
2279 8833 5.856455 GCTTTGTGCGTACATGTTCTATTTT 59.144 36.000 7.30 0.00 36.53 1.82
2280 8834 5.390613 GCTTTGTGCGTACATGTTCTATTT 58.609 37.500 7.30 0.00 36.53 1.40
2281 8835 4.969816 GCTTTGTGCGTACATGTTCTATT 58.030 39.130 7.30 0.00 36.53 1.73
2282 8836 4.600012 GCTTTGTGCGTACATGTTCTAT 57.400 40.909 7.30 0.00 36.53 1.98
2284 8838 2.969443 GCTTTGTGCGTACATGTTCT 57.031 45.000 7.30 0.00 36.53 3.01
2291 8845 7.858945 GAGTATGTCACTAGCTTTGTGCGTAC 61.859 46.154 21.37 21.37 41.90 3.67
2292 8846 5.902402 GAGTATGTCACTAGCTTTGTGCGTA 60.902 44.000 12.84 10.89 41.90 4.42
2293 8847 5.146184 GAGTATGTCACTAGCTTTGTGCGT 61.146 45.833 12.84 11.60 41.90 5.24
2294 8848 3.304559 GAGTATGTCACTAGCTTTGTGCG 59.695 47.826 12.84 0.00 41.90 5.34
2295 8849 3.619038 GGAGTATGTCACTAGCTTTGTGC 59.381 47.826 12.84 9.52 37.72 4.57
2296 8850 3.859961 CGGAGTATGTCACTAGCTTTGTG 59.140 47.826 11.80 11.80 37.72 3.33
2297 8851 3.510360 ACGGAGTATGTCACTAGCTTTGT 59.490 43.478 0.00 0.00 41.94 2.83
2298 8852 4.111375 ACGGAGTATGTCACTAGCTTTG 57.889 45.455 0.00 0.00 41.94 2.77
2299 8853 4.381718 GGAACGGAGTATGTCACTAGCTTT 60.382 45.833 0.00 0.00 45.00 3.51
2300 8854 3.130693 GGAACGGAGTATGTCACTAGCTT 59.869 47.826 0.00 0.00 45.00 3.74
2301 8855 2.688958 GGAACGGAGTATGTCACTAGCT 59.311 50.000 0.00 0.00 45.00 3.32
2302 8856 2.426024 TGGAACGGAGTATGTCACTAGC 59.574 50.000 0.00 0.00 45.00 3.42
2303 8857 3.442625 TGTGGAACGGAGTATGTCACTAG 59.557 47.826 0.00 0.00 45.00 2.57
2304 8858 3.423749 TGTGGAACGGAGTATGTCACTA 58.576 45.455 0.00 0.00 45.00 2.74
2305 8859 2.244695 TGTGGAACGGAGTATGTCACT 58.755 47.619 0.00 0.00 45.00 3.41
2306 8860 2.736144 TGTGGAACGGAGTATGTCAC 57.264 50.000 0.00 0.00 45.00 3.67
2307 8861 2.565391 ACATGTGGAACGGAGTATGTCA 59.435 45.455 0.00 0.00 45.00 3.58
2308 8862 3.247006 ACATGTGGAACGGAGTATGTC 57.753 47.619 0.00 0.00 45.00 3.06
2309 8863 3.695830 AACATGTGGAACGGAGTATGT 57.304 42.857 0.00 0.00 45.00 2.29
2310 8864 3.751175 ACAAACATGTGGAACGGAGTATG 59.249 43.478 0.00 0.00 45.00 2.39
2311 8865 4.015872 ACAAACATGTGGAACGGAGTAT 57.984 40.909 0.00 0.00 45.00 2.12
2312 8866 3.478857 ACAAACATGTGGAACGGAGTA 57.521 42.857 0.00 0.00 45.00 2.59
2314 8868 2.031157 GGAACAAACATGTGGAACGGAG 60.031 50.000 0.00 0.00 42.39 4.63
2315 8869 1.950909 GGAACAAACATGTGGAACGGA 59.049 47.619 0.00 0.00 42.39 4.69
2316 8870 1.334599 CGGAACAAACATGTGGAACGG 60.335 52.381 0.00 0.00 42.39 4.44
2317 8871 1.332375 ACGGAACAAACATGTGGAACG 59.668 47.619 0.00 2.73 42.39 3.95
2318 8872 3.066203 AGAACGGAACAAACATGTGGAAC 59.934 43.478 0.00 0.00 37.35 3.62
2319 8873 3.283751 AGAACGGAACAAACATGTGGAA 58.716 40.909 0.00 0.00 0.00 3.53
2320 8874 2.925724 AGAACGGAACAAACATGTGGA 58.074 42.857 0.00 0.00 0.00 4.02
2321 8875 3.708563 AAGAACGGAACAAACATGTGG 57.291 42.857 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.