Multiple sequence alignment - TraesCS6A01G364300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G364300 chr6A 100.000 5550 0 0 1 5550 593006024 593011573 0.000000e+00 10250.0
1 TraesCS6A01G364300 chr6A 98.780 1639 19 1 3744 5381 593027304 593028942 0.000000e+00 2915.0
2 TraesCS6A01G364300 chr6A 87.739 261 32 0 5071 5331 471137168 471136908 6.990000e-79 305.0
3 TraesCS6A01G364300 chr6A 82.101 257 36 6 116 372 228519630 228519876 1.570000e-50 211.0
4 TraesCS6A01G364300 chr6A 83.486 218 29 4 149 359 509284026 509284243 4.390000e-46 196.0
5 TraesCS6A01G364300 chr6A 96.610 59 1 1 1089 1146 32534077 32534019 4.580000e-16 97.1
6 TraesCS6A01G364300 chr6A 94.915 59 2 1 1089 1146 32560270 32560212 2.130000e-14 91.6
7 TraesCS6A01G364300 chr6A 96.429 56 1 1 1089 1143 588755889 588755944 2.130000e-14 91.6
8 TraesCS6A01G364300 chr6D 96.272 3541 107 11 1544 5072 446442400 446445927 0.000000e+00 5784.0
9 TraesCS6A01G364300 chr6D 90.503 1432 85 24 280 1699 446441013 446442405 0.000000e+00 1844.0
10 TraesCS6A01G364300 chr6D 87.981 208 11 7 5330 5536 446445926 446446120 3.340000e-57 233.0
11 TraesCS6A01G364300 chr6B 96.115 3243 100 12 1544 4778 674711327 674714551 0.000000e+00 5267.0
12 TraesCS6A01G364300 chr6B 94.553 1230 40 11 483 1699 674710117 674711332 0.000000e+00 1875.0
13 TraesCS6A01G364300 chr6B 87.526 489 48 4 1 487 674555215 674554738 2.260000e-153 553.0
14 TraesCS6A01G364300 chr6B 88.889 306 22 4 4766 5068 674715694 674715990 3.160000e-97 366.0
15 TraesCS6A01G364300 chr6B 89.565 230 19 3 4842 5068 674714764 674714991 2.530000e-73 287.0
16 TraesCS6A01G364300 chr6B 81.743 241 33 6 134 372 394694002 394693771 2.040000e-44 191.0
17 TraesCS6A01G364300 chr3A 88.346 266 31 0 5068 5333 217857563 217857828 2.490000e-83 320.0
18 TraesCS6A01G364300 chr7B 88.060 268 29 3 5066 5332 69589510 69589775 1.160000e-81 315.0
19 TraesCS6A01G364300 chr7B 92.727 55 3 1 1092 1146 559713110 559713057 1.660000e-10 78.7
20 TraesCS6A01G364300 chr7B 88.525 61 5 2 270 328 143862461 143862401 7.710000e-09 73.1
21 TraesCS6A01G364300 chr4A 87.739 261 32 0 5071 5331 137534831 137534571 6.990000e-79 305.0
22 TraesCS6A01G364300 chr4A 95.455 44 1 1 1089 1131 592072995 592072952 9.980000e-08 69.4
23 TraesCS6A01G364300 chr2A 87.739 261 32 0 5071 5331 109654251 109653991 6.990000e-79 305.0
24 TraesCS6A01G364300 chr2A 85.614 285 37 4 5051 5334 745589111 745589392 4.200000e-76 296.0
25 TraesCS6A01G364300 chr1A 87.739 261 32 0 5071 5331 354686510 354686250 6.990000e-79 305.0
26 TraesCS6A01G364300 chr1A 86.667 270 36 0 5068 5337 554877925 554878194 3.250000e-77 300.0
27 TraesCS6A01G364300 chr1A 98.438 64 1 0 1080 1143 389228048 389228111 4.540000e-21 113.0
28 TraesCS6A01G364300 chr7D 79.688 192 31 6 177 362 606556047 606556236 1.250000e-26 132.0
29 TraesCS6A01G364300 chr2B 76.555 209 41 6 155 362 6178338 6178137 2.110000e-19 108.0
30 TraesCS6A01G364300 chr2D 75.301 166 35 5 163 324 521589118 521588955 2.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G364300 chr6A 593006024 593011573 5549 False 10250.000000 10250 100.000000 1 5550 1 chr6A.!!$F4 5549
1 TraesCS6A01G364300 chr6A 593027304 593028942 1638 False 2915.000000 2915 98.780000 3744 5381 1 chr6A.!!$F5 1637
2 TraesCS6A01G364300 chr6D 446441013 446446120 5107 False 2620.333333 5784 91.585333 280 5536 3 chr6D.!!$F1 5256
3 TraesCS6A01G364300 chr6B 674710117 674715990 5873 False 1948.750000 5267 92.280500 483 5068 4 chr6B.!!$F1 4585


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.097674 GTCAAGTGCGATCACATGGC 59.902 55.000 0.00 0.0 45.49 4.40 F
156 157 0.321475 TCAAGTGCGATCACATGGCA 60.321 50.000 0.00 0.0 45.49 4.92 F
160 161 0.456653 GTGCGATCACATGGCAAACC 60.457 55.000 0.00 0.0 45.50 3.27 F
272 273 0.604243 AAATTGCCGCGTGTCCACTA 60.604 50.000 4.92 0.0 0.00 2.74 F
273 274 0.604243 AATTGCCGCGTGTCCACTAA 60.604 50.000 4.92 0.0 0.00 2.24 F
2268 2478 0.603065 AAAGCCGCACCTTCCAAATC 59.397 50.000 0.00 0.0 0.00 2.17 F
2401 2611 0.319405 GCTTGGCAACCATTTCAGCT 59.681 50.000 0.00 0.0 32.67 4.24 F
4380 4598 1.135915 AGATGTCGTGATGGAGCAGAC 59.864 52.381 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1382 1440 0.392706 TCTTGCTGCGGAGAAGACAA 59.607 50.000 8.65 0.94 0.00 3.18 R
1451 1509 1.423056 GTTCTGCTGATGCGTGCTC 59.577 57.895 0.00 0.00 43.34 4.26 R
1767 1975 4.027437 ACTACACAACCCCACAAAACAAT 58.973 39.130 0.00 0.00 0.00 2.71 R
2268 2478 0.390866 ATGAGCTTCGACTGGTGCAG 60.391 55.000 0.00 0.00 37.52 4.41 R
2348 2558 7.732222 ACATCTAAGAAGGAGAAGAATGAGT 57.268 36.000 0.00 0.00 0.00 3.41 R
3475 3685 0.106967 GCCTCAGGGTCCTCAATTCC 60.107 60.000 0.00 0.00 34.45 3.01 R
4387 4605 0.952984 GGCTGTCGCTTTGCTTCTCT 60.953 55.000 0.00 0.00 36.09 3.10 R
5527 6849 0.618458 GAAAAAGGGGGAAATGGGCC 59.382 55.000 0.00 0.00 0.00 5.80 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.428746 TGGTTGTTTTGTCGTTCATGG 57.571 42.857 0.00 0.00 0.00 3.66
21 22 3.017442 TGGTTGTTTTGTCGTTCATGGA 58.983 40.909 0.00 0.00 0.00 3.41
22 23 3.181495 TGGTTGTTTTGTCGTTCATGGAC 60.181 43.478 0.00 0.00 34.99 4.02
23 24 3.368495 GTTGTTTTGTCGTTCATGGACC 58.632 45.455 0.00 0.00 33.46 4.46
24 25 2.644676 TGTTTTGTCGTTCATGGACCA 58.355 42.857 0.00 0.00 33.46 4.02
25 26 3.218453 TGTTTTGTCGTTCATGGACCAT 58.782 40.909 0.00 0.00 33.46 3.55
26 27 3.004210 TGTTTTGTCGTTCATGGACCATG 59.996 43.478 26.10 26.10 42.60 3.66
36 37 4.753516 TCATGGACCATGACGTAATCTT 57.246 40.909 29.67 0.00 44.60 2.40
37 38 4.693283 TCATGGACCATGACGTAATCTTC 58.307 43.478 29.67 0.00 44.60 2.87
38 39 4.161377 TCATGGACCATGACGTAATCTTCA 59.839 41.667 29.67 6.53 44.60 3.02
39 40 4.753516 TGGACCATGACGTAATCTTCAT 57.246 40.909 0.00 0.00 33.73 2.57
40 41 5.097742 TGGACCATGACGTAATCTTCATT 57.902 39.130 0.00 0.00 31.61 2.57
41 42 6.228616 TGGACCATGACGTAATCTTCATTA 57.771 37.500 0.00 0.00 31.61 1.90
42 43 6.826668 TGGACCATGACGTAATCTTCATTAT 58.173 36.000 0.00 0.00 31.61 1.28
43 44 6.705825 TGGACCATGACGTAATCTTCATTATG 59.294 38.462 0.00 0.00 37.47 1.90
44 45 6.706270 GGACCATGACGTAATCTTCATTATGT 59.294 38.462 0.00 0.20 44.29 2.29
45 46 7.226720 GGACCATGACGTAATCTTCATTATGTT 59.773 37.037 0.00 0.00 42.48 2.71
46 47 8.506168 ACCATGACGTAATCTTCATTATGTTT 57.494 30.769 0.00 0.00 42.48 2.83
47 48 8.397906 ACCATGACGTAATCTTCATTATGTTTG 58.602 33.333 0.00 3.82 42.48 2.93
48 49 7.857389 CCATGACGTAATCTTCATTATGTTTGG 59.143 37.037 0.00 11.62 42.48 3.28
49 50 7.315247 TGACGTAATCTTCATTATGTTTGGG 57.685 36.000 0.00 0.00 42.48 4.12
50 51 7.106890 TGACGTAATCTTCATTATGTTTGGGA 58.893 34.615 0.00 0.00 42.48 4.37
51 52 7.279981 TGACGTAATCTTCATTATGTTTGGGAG 59.720 37.037 0.00 0.00 42.48 4.30
52 53 6.542370 ACGTAATCTTCATTATGTTTGGGAGG 59.458 38.462 0.00 0.00 40.46 4.30
53 54 5.859205 AATCTTCATTATGTTTGGGAGGC 57.141 39.130 0.00 0.00 0.00 4.70
54 55 4.591321 TCTTCATTATGTTTGGGAGGCT 57.409 40.909 0.00 0.00 0.00 4.58
55 56 4.934356 TCTTCATTATGTTTGGGAGGCTT 58.066 39.130 0.00 0.00 0.00 4.35
56 57 5.332743 TCTTCATTATGTTTGGGAGGCTTT 58.667 37.500 0.00 0.00 0.00 3.51
57 58 5.185635 TCTTCATTATGTTTGGGAGGCTTTG 59.814 40.000 0.00 0.00 0.00 2.77
58 59 4.415596 TCATTATGTTTGGGAGGCTTTGT 58.584 39.130 0.00 0.00 0.00 2.83
59 60 5.575157 TCATTATGTTTGGGAGGCTTTGTA 58.425 37.500 0.00 0.00 0.00 2.41
60 61 5.652014 TCATTATGTTTGGGAGGCTTTGTAG 59.348 40.000 0.00 0.00 0.00 2.74
61 62 3.525800 ATGTTTGGGAGGCTTTGTAGT 57.474 42.857 0.00 0.00 0.00 2.73
62 63 3.306472 TGTTTGGGAGGCTTTGTAGTT 57.694 42.857 0.00 0.00 0.00 2.24
63 64 4.440826 TGTTTGGGAGGCTTTGTAGTTA 57.559 40.909 0.00 0.00 0.00 2.24
64 65 4.993028 TGTTTGGGAGGCTTTGTAGTTAT 58.007 39.130 0.00 0.00 0.00 1.89
65 66 4.764823 TGTTTGGGAGGCTTTGTAGTTATG 59.235 41.667 0.00 0.00 0.00 1.90
66 67 3.644966 TGGGAGGCTTTGTAGTTATGG 57.355 47.619 0.00 0.00 0.00 2.74
67 68 2.916934 TGGGAGGCTTTGTAGTTATGGT 59.083 45.455 0.00 0.00 0.00 3.55
68 69 3.279434 GGGAGGCTTTGTAGTTATGGTG 58.721 50.000 0.00 0.00 0.00 4.17
69 70 2.683362 GGAGGCTTTGTAGTTATGGTGC 59.317 50.000 0.00 0.00 0.00 5.01
70 71 3.343617 GAGGCTTTGTAGTTATGGTGCA 58.656 45.455 0.00 0.00 0.00 4.57
71 72 3.081804 AGGCTTTGTAGTTATGGTGCAC 58.918 45.455 8.80 8.80 0.00 4.57
72 73 3.081804 GGCTTTGTAGTTATGGTGCACT 58.918 45.455 17.98 0.00 0.00 4.40
73 74 3.506067 GGCTTTGTAGTTATGGTGCACTT 59.494 43.478 17.98 7.44 0.00 3.16
74 75 4.022329 GGCTTTGTAGTTATGGTGCACTTT 60.022 41.667 17.98 7.05 0.00 2.66
75 76 5.508994 GGCTTTGTAGTTATGGTGCACTTTT 60.509 40.000 17.98 4.40 0.00 2.27
76 77 5.983118 GCTTTGTAGTTATGGTGCACTTTTT 59.017 36.000 17.98 1.80 0.00 1.94
77 78 6.143919 GCTTTGTAGTTATGGTGCACTTTTTC 59.856 38.462 17.98 5.37 0.00 2.29
78 79 6.952773 TTGTAGTTATGGTGCACTTTTTCT 57.047 33.333 17.98 12.24 0.00 2.52
79 80 6.952773 TGTAGTTATGGTGCACTTTTTCTT 57.047 33.333 17.98 0.27 0.00 2.52
80 81 7.341445 TGTAGTTATGGTGCACTTTTTCTTT 57.659 32.000 17.98 0.00 0.00 2.52
81 82 8.453238 TGTAGTTATGGTGCACTTTTTCTTTA 57.547 30.769 17.98 0.00 0.00 1.85
82 83 8.904834 TGTAGTTATGGTGCACTTTTTCTTTAA 58.095 29.630 17.98 1.31 0.00 1.52
83 84 9.738832 GTAGTTATGGTGCACTTTTTCTTTAAA 57.261 29.630 17.98 0.00 0.00 1.52
85 86 9.660180 AGTTATGGTGCACTTTTTCTTTAAAAA 57.340 25.926 17.98 0.00 41.21 1.94
88 89 7.313951 TGGTGCACTTTTTCTTTAAAAATGG 57.686 32.000 17.98 0.00 42.22 3.16
89 90 6.881602 TGGTGCACTTTTTCTTTAAAAATGGT 59.118 30.769 17.98 0.00 42.22 3.55
90 91 8.041323 TGGTGCACTTTTTCTTTAAAAATGGTA 58.959 29.630 17.98 0.00 42.22 3.25
91 92 9.051679 GGTGCACTTTTTCTTTAAAAATGGTAT 57.948 29.630 17.98 0.00 42.22 2.73
92 93 9.862585 GTGCACTTTTTCTTTAAAAATGGTATG 57.137 29.630 10.32 0.00 42.22 2.39
93 94 9.823647 TGCACTTTTTCTTTAAAAATGGTATGA 57.176 25.926 0.00 0.00 42.22 2.15
132 133 7.878621 AGATCTTGGAATCTGATAATACCCA 57.121 36.000 0.00 0.00 34.68 4.51
133 134 8.280258 AGATCTTGGAATCTGATAATACCCAA 57.720 34.615 0.00 0.00 34.68 4.12
134 135 8.727149 AGATCTTGGAATCTGATAATACCCAAA 58.273 33.333 0.00 0.00 34.68 3.28
135 136 8.697507 ATCTTGGAATCTGATAATACCCAAAC 57.302 34.615 0.00 0.00 32.59 2.93
136 137 6.765989 TCTTGGAATCTGATAATACCCAAACG 59.234 38.462 0.00 0.00 32.59 3.60
137 138 5.996644 TGGAATCTGATAATACCCAAACGT 58.003 37.500 0.00 0.00 0.00 3.99
138 139 6.053005 TGGAATCTGATAATACCCAAACGTC 58.947 40.000 0.00 0.00 0.00 4.34
139 140 6.053005 GGAATCTGATAATACCCAAACGTCA 58.947 40.000 0.00 0.00 0.00 4.35
140 141 6.540914 GGAATCTGATAATACCCAAACGTCAA 59.459 38.462 0.00 0.00 0.00 3.18
141 142 7.254795 GGAATCTGATAATACCCAAACGTCAAG 60.255 40.741 0.00 0.00 0.00 3.02
142 143 6.045072 TCTGATAATACCCAAACGTCAAGT 57.955 37.500 0.00 0.00 0.00 3.16
143 144 5.872617 TCTGATAATACCCAAACGTCAAGTG 59.127 40.000 0.00 0.00 0.00 3.16
144 145 4.393680 TGATAATACCCAAACGTCAAGTGC 59.606 41.667 0.00 0.00 0.00 4.40
145 146 1.153353 ATACCCAAACGTCAAGTGCG 58.847 50.000 0.00 0.00 0.00 5.34
146 147 0.104487 TACCCAAACGTCAAGTGCGA 59.896 50.000 0.00 0.00 0.00 5.10
147 148 0.534203 ACCCAAACGTCAAGTGCGAT 60.534 50.000 0.00 0.00 0.00 4.58
148 149 0.165944 CCCAAACGTCAAGTGCGATC 59.834 55.000 0.00 0.00 0.00 3.69
149 150 0.865111 CCAAACGTCAAGTGCGATCA 59.135 50.000 0.00 0.00 0.00 2.92
150 151 1.398451 CCAAACGTCAAGTGCGATCAC 60.398 52.381 0.00 0.00 43.44 3.06
151 152 1.260297 CAAACGTCAAGTGCGATCACA 59.740 47.619 0.00 0.00 45.49 3.58
152 153 1.795768 AACGTCAAGTGCGATCACAT 58.204 45.000 0.00 0.00 45.49 3.21
153 154 1.070821 ACGTCAAGTGCGATCACATG 58.929 50.000 0.00 0.00 45.49 3.21
154 155 0.371301 CGTCAAGTGCGATCACATGG 59.629 55.000 0.00 0.00 45.49 3.66
155 156 0.097674 GTCAAGTGCGATCACATGGC 59.902 55.000 0.00 0.00 45.49 4.40
156 157 0.321475 TCAAGTGCGATCACATGGCA 60.321 50.000 0.00 0.00 45.49 4.92
157 158 0.522626 CAAGTGCGATCACATGGCAA 59.477 50.000 0.00 0.00 45.50 4.52
158 159 1.068402 CAAGTGCGATCACATGGCAAA 60.068 47.619 0.00 0.00 45.50 3.68
159 160 0.523072 AGTGCGATCACATGGCAAAC 59.477 50.000 0.00 0.00 45.50 2.93
160 161 0.456653 GTGCGATCACATGGCAAACC 60.457 55.000 0.00 0.00 45.50 3.27
161 162 1.226379 GCGATCACATGGCAAACCG 60.226 57.895 0.00 0.00 39.70 4.44
162 163 1.643868 GCGATCACATGGCAAACCGA 61.644 55.000 0.00 0.00 39.70 4.69
163 164 0.801872 CGATCACATGGCAAACCGAA 59.198 50.000 0.00 0.00 39.70 4.30
164 165 1.465689 CGATCACATGGCAAACCGAAC 60.466 52.381 0.00 0.00 39.70 3.95
165 166 1.539388 GATCACATGGCAAACCGAACA 59.461 47.619 0.00 0.00 39.70 3.18
166 167 1.614996 TCACATGGCAAACCGAACAT 58.385 45.000 0.00 0.00 39.70 2.71
167 168 1.959985 TCACATGGCAAACCGAACATT 59.040 42.857 0.00 0.00 39.70 2.71
168 169 2.363680 TCACATGGCAAACCGAACATTT 59.636 40.909 0.00 0.00 39.70 2.32
169 170 3.129871 CACATGGCAAACCGAACATTTT 58.870 40.909 0.00 0.00 39.70 1.82
170 171 3.184178 CACATGGCAAACCGAACATTTTC 59.816 43.478 0.00 0.00 39.70 2.29
185 186 7.831750 GAACATTTTCGACGACAAATTTAGT 57.168 32.000 0.00 0.29 0.00 2.24
186 187 8.265220 GAACATTTTCGACGACAAATTTAGTT 57.735 30.769 0.00 7.86 0.00 2.24
187 188 9.372541 GAACATTTTCGACGACAAATTTAGTTA 57.627 29.630 0.00 0.00 0.00 2.24
188 189 8.703823 ACATTTTCGACGACAAATTTAGTTAC 57.296 30.769 0.00 0.00 0.00 2.50
189 190 7.528182 ACATTTTCGACGACAAATTTAGTTACG 59.472 33.333 0.00 0.00 0.00 3.18
190 191 4.551056 TCGACGACAAATTTAGTTACGC 57.449 40.909 0.00 0.00 0.00 4.42
191 192 3.057999 TCGACGACAAATTTAGTTACGCG 59.942 43.478 3.53 3.53 0.00 6.01
192 193 3.057999 CGACGACAAATTTAGTTACGCGA 59.942 43.478 15.93 0.00 0.00 5.87
193 194 4.552992 GACGACAAATTTAGTTACGCGAG 58.447 43.478 15.93 0.00 0.00 5.03
194 195 3.365820 ACGACAAATTTAGTTACGCGAGG 59.634 43.478 15.93 0.00 0.00 4.63
195 196 3.609373 CGACAAATTTAGTTACGCGAGGA 59.391 43.478 15.93 0.00 0.00 3.71
196 197 4.266976 CGACAAATTTAGTTACGCGAGGAT 59.733 41.667 15.93 0.00 0.00 3.24
197 198 5.220340 CGACAAATTTAGTTACGCGAGGATT 60.220 40.000 15.93 0.00 0.00 3.01
198 199 6.020440 CGACAAATTTAGTTACGCGAGGATTA 60.020 38.462 15.93 0.00 0.00 1.75
199 200 7.306399 CGACAAATTTAGTTACGCGAGGATTAT 60.306 37.037 15.93 0.00 0.00 1.28
200 201 8.876275 ACAAATTTAGTTACGCGAGGATTATA 57.124 30.769 15.93 0.00 0.00 0.98
201 202 9.316730 ACAAATTTAGTTACGCGAGGATTATAA 57.683 29.630 15.93 0.00 0.00 0.98
209 210 9.538508 AGTTACGCGAGGATTATAATTTTAGTT 57.461 29.630 15.93 0.00 0.00 2.24
210 211 9.577003 GTTACGCGAGGATTATAATTTTAGTTG 57.423 33.333 15.93 0.00 0.00 3.16
211 212 7.186021 ACGCGAGGATTATAATTTTAGTTGG 57.814 36.000 15.93 0.00 0.00 3.77
212 213 6.077838 CGCGAGGATTATAATTTTAGTTGGC 58.922 40.000 0.00 0.00 0.00 4.52
213 214 6.293190 CGCGAGGATTATAATTTTAGTTGGCA 60.293 38.462 0.00 0.00 0.00 4.92
214 215 7.422399 GCGAGGATTATAATTTTAGTTGGCAA 58.578 34.615 0.00 0.00 0.00 4.52
215 216 7.591426 GCGAGGATTATAATTTTAGTTGGCAAG 59.409 37.037 0.00 0.00 0.00 4.01
216 217 7.591426 CGAGGATTATAATTTTAGTTGGCAAGC 59.409 37.037 0.00 0.00 0.00 4.01
217 218 8.305046 AGGATTATAATTTTAGTTGGCAAGCA 57.695 30.769 0.00 0.00 0.00 3.91
218 219 8.927411 AGGATTATAATTTTAGTTGGCAAGCAT 58.073 29.630 0.00 0.00 0.00 3.79
219 220 8.981647 GGATTATAATTTTAGTTGGCAAGCATG 58.018 33.333 0.00 0.00 0.00 4.06
220 221 9.748708 GATTATAATTTTAGTTGGCAAGCATGA 57.251 29.630 0.00 0.00 0.00 3.07
226 227 9.452287 AATTTTAGTTGGCAAGCATGATAATTT 57.548 25.926 0.00 0.00 0.00 1.82
227 228 8.845413 TTTTAGTTGGCAAGCATGATAATTTT 57.155 26.923 0.00 0.00 0.00 1.82
228 229 7.830940 TTAGTTGGCAAGCATGATAATTTTG 57.169 32.000 0.00 0.00 0.00 2.44
229 230 5.797051 AGTTGGCAAGCATGATAATTTTGT 58.203 33.333 0.00 0.00 0.00 2.83
230 231 5.640357 AGTTGGCAAGCATGATAATTTTGTG 59.360 36.000 0.00 0.00 0.00 3.33
231 232 3.933955 TGGCAAGCATGATAATTTTGTGC 59.066 39.130 0.00 0.00 36.11 4.57
237 238 6.276832 AGCATGATAATTTTGTGCTTCAGT 57.723 33.333 0.00 0.00 43.03 3.41
238 239 6.694447 AGCATGATAATTTTGTGCTTCAGTT 58.306 32.000 0.00 0.00 43.03 3.16
239 240 7.156673 AGCATGATAATTTTGTGCTTCAGTTT 58.843 30.769 0.00 0.00 43.03 2.66
240 241 7.117236 AGCATGATAATTTTGTGCTTCAGTTTG 59.883 33.333 0.00 0.00 43.03 2.93
241 242 7.095523 GCATGATAATTTTGTGCTTCAGTTTGT 60.096 33.333 0.00 0.00 33.25 2.83
242 243 8.767085 CATGATAATTTTGTGCTTCAGTTTGTT 58.233 29.630 0.00 0.00 0.00 2.83
243 244 8.715191 TGATAATTTTGTGCTTCAGTTTGTTT 57.285 26.923 0.00 0.00 0.00 2.83
244 245 8.816144 TGATAATTTTGTGCTTCAGTTTGTTTC 58.184 29.630 0.00 0.00 0.00 2.78
245 246 8.947055 ATAATTTTGTGCTTCAGTTTGTTTCT 57.053 26.923 0.00 0.00 0.00 2.52
246 247 7.671495 AATTTTGTGCTTCAGTTTGTTTCTT 57.329 28.000 0.00 0.00 0.00 2.52
247 248 6.464895 TTTTGTGCTTCAGTTTGTTTCTTG 57.535 33.333 0.00 0.00 0.00 3.02
248 249 5.384063 TTGTGCTTCAGTTTGTTTCTTGA 57.616 34.783 0.00 0.00 0.00 3.02
249 250 5.581126 TGTGCTTCAGTTTGTTTCTTGAT 57.419 34.783 0.00 0.00 0.00 2.57
250 251 6.691754 TGTGCTTCAGTTTGTTTCTTGATA 57.308 33.333 0.00 0.00 0.00 2.15
251 252 6.728200 TGTGCTTCAGTTTGTTTCTTGATAG 58.272 36.000 0.00 0.00 0.00 2.08
252 253 6.542005 TGTGCTTCAGTTTGTTTCTTGATAGA 59.458 34.615 0.00 0.00 0.00 1.98
253 254 7.066887 TGTGCTTCAGTTTGTTTCTTGATAGAA 59.933 33.333 0.00 0.00 38.61 2.10
254 255 7.915397 GTGCTTCAGTTTGTTTCTTGATAGAAA 59.085 33.333 0.00 0.00 45.68 2.52
263 264 3.673746 TCTTGATAGAAAATTGCCGCG 57.326 42.857 0.00 0.00 0.00 6.46
264 265 3.006940 TCTTGATAGAAAATTGCCGCGT 58.993 40.909 4.92 0.00 0.00 6.01
265 266 2.823196 TGATAGAAAATTGCCGCGTG 57.177 45.000 4.92 0.00 0.00 5.34
266 267 2.080693 TGATAGAAAATTGCCGCGTGT 58.919 42.857 4.92 0.00 0.00 4.49
267 268 2.095213 TGATAGAAAATTGCCGCGTGTC 59.905 45.455 4.92 0.00 0.00 3.67
268 269 0.800012 TAGAAAATTGCCGCGTGTCC 59.200 50.000 4.92 0.00 0.00 4.02
269 270 1.169661 AGAAAATTGCCGCGTGTCCA 61.170 50.000 4.92 0.00 0.00 4.02
270 271 1.001745 GAAAATTGCCGCGTGTCCAC 61.002 55.000 4.92 0.00 0.00 4.02
271 272 1.452145 AAAATTGCCGCGTGTCCACT 61.452 50.000 4.92 0.00 0.00 4.00
272 273 0.604243 AAATTGCCGCGTGTCCACTA 60.604 50.000 4.92 0.00 0.00 2.74
273 274 0.604243 AATTGCCGCGTGTCCACTAA 60.604 50.000 4.92 0.00 0.00 2.24
274 275 1.296056 ATTGCCGCGTGTCCACTAAC 61.296 55.000 4.92 0.00 0.00 2.34
275 276 2.048503 GCCGCGTGTCCACTAACT 60.049 61.111 4.92 0.00 0.00 2.24
276 277 1.666872 GCCGCGTGTCCACTAACTT 60.667 57.895 4.92 0.00 0.00 2.66
277 278 1.897398 GCCGCGTGTCCACTAACTTG 61.897 60.000 4.92 0.00 0.00 3.16
278 279 1.491563 CGCGTGTCCACTAACTTGC 59.508 57.895 0.00 0.00 0.00 4.01
287 288 2.375174 TCCACTAACTTGCCATCCTTGT 59.625 45.455 0.00 0.00 0.00 3.16
295 296 2.472695 TGCCATCCTTGTGTCACTAC 57.527 50.000 4.27 0.00 0.00 2.73
300 301 4.379813 GCCATCCTTGTGTCACTACAATTG 60.380 45.833 3.24 3.24 39.60 2.32
311 312 4.851558 GTCACTACAATTGCCATCGAAAAC 59.148 41.667 5.05 0.00 0.00 2.43
324 325 3.701532 TCGAAAACGTTCAATTTGCCT 57.298 38.095 0.00 0.00 32.89 4.75
361 369 4.679662 ACGTCAGGTACTTATCATTTCCG 58.320 43.478 0.00 0.00 34.60 4.30
364 372 6.040166 ACGTCAGGTACTTATCATTTCCGTAT 59.960 38.462 0.00 0.00 34.60 3.06
409 417 7.761038 AAAAAGGTTTCCGTAGATCTTCATT 57.239 32.000 0.00 0.00 0.00 2.57
410 418 7.761038 AAAAGGTTTCCGTAGATCTTCATTT 57.239 32.000 0.00 0.00 0.00 2.32
411 419 7.761038 AAAGGTTTCCGTAGATCTTCATTTT 57.239 32.000 0.00 0.00 0.00 1.82
412 420 7.761038 AAGGTTTCCGTAGATCTTCATTTTT 57.239 32.000 0.00 0.00 0.00 1.94
503 542 1.275573 AGAAACCCAGCGAGAACCTAC 59.724 52.381 0.00 0.00 0.00 3.18
593 632 4.796231 CCGTCAGGTTCCGAGCCG 62.796 72.222 0.00 0.00 0.00 5.52
635 681 5.343307 AAAAAGGAGAGATCAGAGAGAGC 57.657 43.478 0.00 0.00 0.00 4.09
636 682 3.668141 AAGGAGAGATCAGAGAGAGCA 57.332 47.619 0.00 0.00 34.30 4.26
637 683 3.219176 AGGAGAGATCAGAGAGAGCAG 57.781 52.381 0.00 0.00 34.30 4.24
638 684 1.610522 GGAGAGATCAGAGAGAGCAGC 59.389 57.143 0.00 0.00 34.30 5.25
639 685 2.300433 GAGAGATCAGAGAGAGCAGCA 58.700 52.381 0.00 0.00 34.30 4.41
640 686 2.292569 GAGAGATCAGAGAGAGCAGCAG 59.707 54.545 0.00 0.00 34.30 4.24
641 687 2.026641 GAGATCAGAGAGAGCAGCAGT 58.973 52.381 0.00 0.00 34.30 4.40
642 688 2.428171 GAGATCAGAGAGAGCAGCAGTT 59.572 50.000 0.00 0.00 34.30 3.16
886 939 1.449778 GCCACCGGTAAAGCTCCTC 60.450 63.158 6.87 0.00 0.00 3.71
927 981 2.545322 CGTTCCCTAGCGATTTCTACCC 60.545 54.545 0.00 0.00 0.00 3.69
1026 1080 2.359975 AACCCTAGCGCCAACTGC 60.360 61.111 2.29 0.00 0.00 4.40
1146 1200 2.405522 TAACCCCTTCTCCCACCCGT 62.406 60.000 0.00 0.00 0.00 5.28
1191 1249 2.104792 TGGTAGCTCAGTTCTGCAGTTT 59.895 45.455 14.67 0.00 0.00 2.66
1221 1279 1.078778 TTTCCGCGCTGATGCCTAA 60.079 52.632 5.56 0.00 35.36 2.69
1382 1440 6.206829 GGCAGTAACCTAGTTTTGACTTTGAT 59.793 38.462 0.00 0.00 0.00 2.57
1389 1447 7.931275 ACCTAGTTTTGACTTTGATTGTCTTC 58.069 34.615 0.00 0.00 35.63 2.87
1419 1477 0.812811 GATCATTGAGCTCAGCGGCA 60.813 55.000 17.43 1.38 34.17 5.69
1515 1573 2.814183 GATCACCGCGGTTCGTCTGT 62.814 60.000 32.11 9.33 36.19 3.41
1767 1975 3.884693 AGAAAGCATCACATGTTGTCACA 59.115 39.130 0.00 0.00 37.31 3.58
1783 1991 3.194062 GTCACATTGTTTTGTGGGGTTG 58.806 45.455 4.89 0.00 45.63 3.77
1784 1992 2.834549 TCACATTGTTTTGTGGGGTTGT 59.165 40.909 4.89 0.00 45.63 3.32
1785 1993 2.935201 CACATTGTTTTGTGGGGTTGTG 59.065 45.455 0.00 0.00 42.63 3.33
1786 1994 2.569404 ACATTGTTTTGTGGGGTTGTGT 59.431 40.909 0.00 0.00 0.00 3.72
1787 1995 3.769844 ACATTGTTTTGTGGGGTTGTGTA 59.230 39.130 0.00 0.00 0.00 2.90
1871 2079 3.512033 AAGATCGAGTAAGCTGTCACC 57.488 47.619 0.00 0.00 0.00 4.02
1993 2203 2.203800 CATGAGCTTTCATGCGCAAT 57.796 45.000 17.11 0.00 44.98 3.56
2176 2386 0.960364 CACAGGTAGCCGGCACAATT 60.960 55.000 31.54 10.27 0.00 2.32
2186 2396 3.129287 AGCCGGCACAATTCTCAAAATAG 59.871 43.478 31.54 0.00 0.00 1.73
2197 2407 7.613022 ACAATTCTCAAAATAGATGGCTCTTCA 59.387 33.333 0.00 0.00 32.66 3.02
2268 2478 0.603065 AAAGCCGCACCTTCCAAATC 59.397 50.000 0.00 0.00 0.00 2.17
2276 2486 1.542915 CACCTTCCAAATCTGCACCAG 59.457 52.381 0.00 0.00 0.00 4.00
2348 2558 6.073276 CCATTCAGTCGAGACACAATGTAAAA 60.073 38.462 17.97 0.00 33.91 1.52
2401 2611 0.319405 GCTTGGCAACCATTTCAGCT 59.681 50.000 0.00 0.00 32.67 4.24
2418 2628 6.543430 TTCAGCTATGGCATTTTATGGTTT 57.457 33.333 4.78 0.00 41.70 3.27
2716 2926 3.120854 GCACAAGTAAGCGAAAGTCAGAG 60.121 47.826 0.00 0.00 0.00 3.35
2720 2930 3.903360 AGTAAGCGAAAGTCAGAGTCAC 58.097 45.455 0.00 0.00 0.00 3.67
2851 3061 3.624410 GTGCTCATGATGCAACACTATCA 59.376 43.478 17.65 0.00 42.41 2.15
2928 3138 3.105283 TCTTCTAGACTAAACCCAGGGC 58.895 50.000 4.91 0.00 0.00 5.19
2965 3175 2.641305 AGCATCTTGTGAGATCTTGCC 58.359 47.619 9.19 0.00 40.67 4.52
3020 3230 7.721399 AGTTTTAGTGTTCCAGAACTTGATGAT 59.279 33.333 11.56 0.00 41.67 2.45
3054 3264 6.016192 TGGAGAAGACATGGTAAGATATCGAC 60.016 42.308 0.00 0.00 0.00 4.20
3057 3267 7.374272 AGAAGACATGGTAAGATATCGACATG 58.626 38.462 20.36 20.36 40.94 3.21
3390 3600 2.948979 TGATCAATCCGTTTACCCATGC 59.051 45.455 0.00 0.00 0.00 4.06
3404 3614 7.533900 CGTTTACCCATGCAGATTTATTAATCG 59.466 37.037 0.00 0.00 43.99 3.34
3514 3724 3.004629 GGCACATCAAATTGACAGTCACA 59.995 43.478 1.52 0.00 0.00 3.58
3518 3728 6.035217 CACATCAAATTGACAGTCACACAAA 58.965 36.000 1.52 0.00 0.00 2.83
3539 3749 3.318313 AGAATACGATCCCAATCCACCT 58.682 45.455 0.00 0.00 0.00 4.00
3623 3833 2.429971 TCTTGGACATTTTGTTGCTGCA 59.570 40.909 0.00 0.00 0.00 4.41
3625 3835 1.479730 TGGACATTTTGTTGCTGCACA 59.520 42.857 0.00 0.90 0.00 4.57
4115 4333 9.178758 GGACACTAATTCCAAACTTGATTCTAT 57.821 33.333 0.00 0.00 32.82 1.98
4380 4598 1.135915 AGATGTCGTGATGGAGCAGAC 59.864 52.381 0.00 0.00 0.00 3.51
4387 4605 2.783135 GTGATGGAGCAGACCAAAGAA 58.217 47.619 0.00 0.00 43.47 2.52
4758 4977 4.529109 TTGTCGTGGACATGTCTGAATA 57.471 40.909 24.50 10.39 42.40 1.75
4920 5288 7.545265 TCTTTTATGTGTGCAAGCAAATAATCC 59.455 33.333 0.00 0.00 31.03 3.01
4972 5343 8.776470 CATAGAAATGTTCAAAATTTTGGCAGT 58.224 29.630 26.45 21.21 38.66 4.40
5307 5679 6.479990 TGAGTTCAGACAAATCTAATATGCGG 59.520 38.462 0.00 0.00 32.25 5.69
5381 6702 5.525199 TCATCAATGCAAATCATTCGGATG 58.475 37.500 0.00 0.00 43.21 3.51
5384 6705 5.584442 TCAATGCAAATCATTCGGATGAAG 58.416 37.500 11.20 5.18 44.96 3.02
5385 6706 3.425577 TGCAAATCATTCGGATGAAGC 57.574 42.857 11.20 15.15 44.96 3.86
5386 6707 2.099592 TGCAAATCATTCGGATGAAGCC 59.900 45.455 11.20 0.52 44.96 4.35
5387 6708 2.544486 GCAAATCATTCGGATGAAGCCC 60.544 50.000 11.20 0.00 44.96 5.19
5388 6709 2.689471 CAAATCATTCGGATGAAGCCCA 59.311 45.455 11.20 0.00 44.96 5.36
5391 6712 2.115427 TCATTCGGATGAAGCCCACTA 58.885 47.619 3.16 0.00 39.29 2.74
5392 6713 2.705658 TCATTCGGATGAAGCCCACTAT 59.294 45.455 3.16 0.00 39.29 2.12
5394 6715 4.346709 TCATTCGGATGAAGCCCACTATAA 59.653 41.667 3.16 0.00 39.29 0.98
5395 6716 4.764050 TTCGGATGAAGCCCACTATAAA 57.236 40.909 0.00 0.00 0.00 1.40
5396 6717 4.974645 TCGGATGAAGCCCACTATAAAT 57.025 40.909 0.00 0.00 0.00 1.40
5397 6718 6.428083 TTCGGATGAAGCCCACTATAAATA 57.572 37.500 0.00 0.00 0.00 1.40
5398 6719 6.620877 TCGGATGAAGCCCACTATAAATAT 57.379 37.500 0.00 0.00 0.00 1.28
5399 6720 6.406370 TCGGATGAAGCCCACTATAAATATG 58.594 40.000 0.00 0.00 0.00 1.78
5400 6721 6.013725 TCGGATGAAGCCCACTATAAATATGT 60.014 38.462 0.00 0.00 0.00 2.29
5401 6722 6.313905 CGGATGAAGCCCACTATAAATATGTC 59.686 42.308 0.00 0.00 0.00 3.06
5402 6723 7.398024 GGATGAAGCCCACTATAAATATGTCT 58.602 38.462 0.00 0.00 0.00 3.41
5403 6724 7.550906 GGATGAAGCCCACTATAAATATGTCTC 59.449 40.741 0.00 0.00 0.00 3.36
5404 6725 7.373617 TGAAGCCCACTATAAATATGTCTCA 57.626 36.000 0.00 0.00 0.00 3.27
5405 6726 7.445121 TGAAGCCCACTATAAATATGTCTCAG 58.555 38.462 0.00 0.00 0.00 3.35
5527 6849 1.209504 ACTGGGTGTTCATATGGGTCG 59.790 52.381 2.13 0.00 0.00 4.79
5540 6862 4.833989 GGTCGGCCCATTTCCCCC 62.834 72.222 0.00 0.00 0.00 5.40
5541 6863 3.739613 GTCGGCCCATTTCCCCCT 61.740 66.667 0.00 0.00 0.00 4.79
5542 6864 2.944390 TCGGCCCATTTCCCCCTT 60.944 61.111 0.00 0.00 0.00 3.95
5543 6865 2.038813 CGGCCCATTTCCCCCTTT 59.961 61.111 0.00 0.00 0.00 3.11
5544 6866 1.612146 CGGCCCATTTCCCCCTTTT 60.612 57.895 0.00 0.00 0.00 2.27
5545 6867 1.198094 CGGCCCATTTCCCCCTTTTT 61.198 55.000 0.00 0.00 0.00 1.94
5546 6868 0.618458 GGCCCATTTCCCCCTTTTTC 59.382 55.000 0.00 0.00 0.00 2.29
5547 6869 0.618458 GCCCATTTCCCCCTTTTTCC 59.382 55.000 0.00 0.00 0.00 3.13
5548 6870 1.285280 CCCATTTCCCCCTTTTTCCC 58.715 55.000 0.00 0.00 0.00 3.97
5549 6871 1.203428 CCCATTTCCCCCTTTTTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.017442 TCCATGAACGACAAAACAACCA 58.983 40.909 0.00 0.00 0.00 3.67
1 2 3.368495 GTCCATGAACGACAAAACAACC 58.632 45.455 0.00 0.00 0.00 3.77
2 3 3.181495 TGGTCCATGAACGACAAAACAAC 60.181 43.478 0.00 0.00 31.55 3.32
3 4 3.017442 TGGTCCATGAACGACAAAACAA 58.983 40.909 0.00 0.00 31.55 2.83
4 5 2.644676 TGGTCCATGAACGACAAAACA 58.355 42.857 0.00 0.00 31.55 2.83
5 6 3.252215 TCATGGTCCATGAACGACAAAAC 59.748 43.478 28.87 0.00 46.17 2.43
6 7 3.481453 TCATGGTCCATGAACGACAAAA 58.519 40.909 28.87 6.08 46.17 2.44
7 8 3.133141 TCATGGTCCATGAACGACAAA 57.867 42.857 28.87 6.79 46.17 2.83
8 9 2.849294 TCATGGTCCATGAACGACAA 57.151 45.000 28.87 7.51 46.17 3.18
15 16 4.161377 TGAAGATTACGTCATGGTCCATGA 59.839 41.667 27.61 27.61 46.84 3.07
16 17 4.441792 TGAAGATTACGTCATGGTCCATG 58.558 43.478 23.92 23.92 42.60 3.66
17 18 4.753516 TGAAGATTACGTCATGGTCCAT 57.246 40.909 0.00 0.00 30.40 3.41
18 19 4.753516 ATGAAGATTACGTCATGGTCCA 57.246 40.909 0.00 0.00 41.92 4.02
19 20 6.706270 ACATAATGAAGATTACGTCATGGTCC 59.294 38.462 0.00 0.00 42.47 4.46
20 21 7.715265 ACATAATGAAGATTACGTCATGGTC 57.285 36.000 0.00 0.00 42.47 4.02
21 22 8.397906 CAAACATAATGAAGATTACGTCATGGT 58.602 33.333 0.00 0.00 42.47 3.55
22 23 7.857389 CCAAACATAATGAAGATTACGTCATGG 59.143 37.037 0.00 0.00 42.47 3.66
23 24 7.857389 CCCAAACATAATGAAGATTACGTCATG 59.143 37.037 0.00 0.00 42.47 3.07
24 25 7.773224 TCCCAAACATAATGAAGATTACGTCAT 59.227 33.333 0.00 0.00 44.42 3.06
25 26 7.106890 TCCCAAACATAATGAAGATTACGTCA 58.893 34.615 0.00 0.00 38.66 4.35
26 27 7.254795 CCTCCCAAACATAATGAAGATTACGTC 60.255 40.741 0.00 0.00 0.00 4.34
27 28 6.542370 CCTCCCAAACATAATGAAGATTACGT 59.458 38.462 0.00 0.00 0.00 3.57
28 29 6.513393 GCCTCCCAAACATAATGAAGATTACG 60.513 42.308 0.00 0.00 0.00 3.18
29 30 6.547510 AGCCTCCCAAACATAATGAAGATTAC 59.452 38.462 0.00 0.00 0.00 1.89
30 31 6.672593 AGCCTCCCAAACATAATGAAGATTA 58.327 36.000 0.00 0.00 0.00 1.75
31 32 5.522641 AGCCTCCCAAACATAATGAAGATT 58.477 37.500 0.00 0.00 0.00 2.40
32 33 5.134725 AGCCTCCCAAACATAATGAAGAT 57.865 39.130 0.00 0.00 0.00 2.40
33 34 4.591321 AGCCTCCCAAACATAATGAAGA 57.409 40.909 0.00 0.00 0.00 2.87
34 35 5.047092 ACAAAGCCTCCCAAACATAATGAAG 60.047 40.000 0.00 0.00 0.00 3.02
35 36 4.837860 ACAAAGCCTCCCAAACATAATGAA 59.162 37.500 0.00 0.00 0.00 2.57
36 37 4.415596 ACAAAGCCTCCCAAACATAATGA 58.584 39.130 0.00 0.00 0.00 2.57
37 38 4.806640 ACAAAGCCTCCCAAACATAATG 57.193 40.909 0.00 0.00 0.00 1.90
38 39 5.580022 ACTACAAAGCCTCCCAAACATAAT 58.420 37.500 0.00 0.00 0.00 1.28
39 40 4.993028 ACTACAAAGCCTCCCAAACATAA 58.007 39.130 0.00 0.00 0.00 1.90
40 41 4.650972 ACTACAAAGCCTCCCAAACATA 57.349 40.909 0.00 0.00 0.00 2.29
41 42 3.525800 ACTACAAAGCCTCCCAAACAT 57.474 42.857 0.00 0.00 0.00 2.71
42 43 3.306472 AACTACAAAGCCTCCCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
43 44 4.157840 CCATAACTACAAAGCCTCCCAAAC 59.842 45.833 0.00 0.00 0.00 2.93
44 45 4.202631 ACCATAACTACAAAGCCTCCCAAA 60.203 41.667 0.00 0.00 0.00 3.28
45 46 3.332485 ACCATAACTACAAAGCCTCCCAA 59.668 43.478 0.00 0.00 0.00 4.12
46 47 2.916934 ACCATAACTACAAAGCCTCCCA 59.083 45.455 0.00 0.00 0.00 4.37
47 48 3.279434 CACCATAACTACAAAGCCTCCC 58.721 50.000 0.00 0.00 0.00 4.30
48 49 2.683362 GCACCATAACTACAAAGCCTCC 59.317 50.000 0.00 0.00 0.00 4.30
49 50 3.127030 GTGCACCATAACTACAAAGCCTC 59.873 47.826 5.22 0.00 0.00 4.70
50 51 3.081804 GTGCACCATAACTACAAAGCCT 58.918 45.455 5.22 0.00 0.00 4.58
51 52 3.081804 AGTGCACCATAACTACAAAGCC 58.918 45.455 14.63 0.00 0.00 4.35
52 53 4.766404 AAGTGCACCATAACTACAAAGC 57.234 40.909 14.63 0.00 0.00 3.51
53 54 7.425606 AGAAAAAGTGCACCATAACTACAAAG 58.574 34.615 14.63 0.00 0.00 2.77
54 55 7.341445 AGAAAAAGTGCACCATAACTACAAA 57.659 32.000 14.63 0.00 0.00 2.83
55 56 6.952773 AGAAAAAGTGCACCATAACTACAA 57.047 33.333 14.63 0.00 0.00 2.41
56 57 6.952773 AAGAAAAAGTGCACCATAACTACA 57.047 33.333 14.63 0.00 0.00 2.74
57 58 9.738832 TTTAAAGAAAAAGTGCACCATAACTAC 57.261 29.630 14.63 0.00 0.00 2.73
59 60 9.660180 TTTTTAAAGAAAAAGTGCACCATAACT 57.340 25.926 14.63 5.43 39.16 2.24
62 63 9.050601 CCATTTTTAAAGAAAAAGTGCACCATA 57.949 29.630 14.63 0.00 45.33 2.74
63 64 7.555914 ACCATTTTTAAAGAAAAAGTGCACCAT 59.444 29.630 14.63 0.00 45.33 3.55
64 65 6.881602 ACCATTTTTAAAGAAAAAGTGCACCA 59.118 30.769 14.63 0.00 45.33 4.17
65 66 7.315247 ACCATTTTTAAAGAAAAAGTGCACC 57.685 32.000 14.63 0.00 45.33 5.01
66 67 9.862585 CATACCATTTTTAAAGAAAAAGTGCAC 57.137 29.630 9.40 9.40 45.33 4.57
67 68 9.823647 TCATACCATTTTTAAAGAAAAAGTGCA 57.176 25.926 2.47 0.00 45.33 4.57
106 107 9.566331 TGGGTATTATCAGATTCCAAGATCTAT 57.434 33.333 0.00 0.00 34.68 1.98
107 108 8.972662 TGGGTATTATCAGATTCCAAGATCTA 57.027 34.615 0.00 0.00 34.68 1.98
108 109 7.878621 TGGGTATTATCAGATTCCAAGATCT 57.121 36.000 0.00 0.00 36.84 2.75
109 110 8.787852 GTTTGGGTATTATCAGATTCCAAGATC 58.212 37.037 0.00 0.00 34.78 2.75
110 111 7.445402 CGTTTGGGTATTATCAGATTCCAAGAT 59.555 37.037 0.00 0.00 34.78 2.40
111 112 6.765989 CGTTTGGGTATTATCAGATTCCAAGA 59.234 38.462 0.00 0.00 34.78 3.02
112 113 6.542370 ACGTTTGGGTATTATCAGATTCCAAG 59.458 38.462 0.00 0.00 34.78 3.61
113 114 6.419791 ACGTTTGGGTATTATCAGATTCCAA 58.580 36.000 0.00 0.00 0.00 3.53
114 115 5.996644 ACGTTTGGGTATTATCAGATTCCA 58.003 37.500 0.00 0.00 0.00 3.53
115 116 6.053005 TGACGTTTGGGTATTATCAGATTCC 58.947 40.000 0.00 0.00 0.00 3.01
116 117 7.280205 ACTTGACGTTTGGGTATTATCAGATTC 59.720 37.037 0.00 0.00 0.00 2.52
117 118 7.065803 CACTTGACGTTTGGGTATTATCAGATT 59.934 37.037 0.00 0.00 0.00 2.40
118 119 6.538742 CACTTGACGTTTGGGTATTATCAGAT 59.461 38.462 0.00 0.00 0.00 2.90
119 120 5.872617 CACTTGACGTTTGGGTATTATCAGA 59.127 40.000 0.00 0.00 0.00 3.27
120 121 5.447279 GCACTTGACGTTTGGGTATTATCAG 60.447 44.000 0.00 0.00 0.00 2.90
121 122 4.393680 GCACTTGACGTTTGGGTATTATCA 59.606 41.667 0.00 0.00 0.00 2.15
122 123 4.493545 CGCACTTGACGTTTGGGTATTATC 60.494 45.833 0.00 0.00 0.00 1.75
123 124 3.372822 CGCACTTGACGTTTGGGTATTAT 59.627 43.478 0.00 0.00 0.00 1.28
124 125 2.737783 CGCACTTGACGTTTGGGTATTA 59.262 45.455 0.00 0.00 0.00 0.98
125 126 1.533731 CGCACTTGACGTTTGGGTATT 59.466 47.619 0.00 0.00 0.00 1.89
126 127 1.153353 CGCACTTGACGTTTGGGTAT 58.847 50.000 0.00 0.00 0.00 2.73
127 128 0.104487 TCGCACTTGACGTTTGGGTA 59.896 50.000 0.00 0.00 0.00 3.69
128 129 0.534203 ATCGCACTTGACGTTTGGGT 60.534 50.000 0.00 0.00 0.00 4.51
129 130 0.165944 GATCGCACTTGACGTTTGGG 59.834 55.000 0.00 0.00 0.00 4.12
130 131 0.865111 TGATCGCACTTGACGTTTGG 59.135 50.000 0.00 0.00 0.00 3.28
131 132 1.260297 TGTGATCGCACTTGACGTTTG 59.740 47.619 4.45 0.00 45.36 2.93
132 133 1.577468 TGTGATCGCACTTGACGTTT 58.423 45.000 4.45 0.00 45.36 3.60
133 134 1.795768 ATGTGATCGCACTTGACGTT 58.204 45.000 11.96 0.00 45.36 3.99
134 135 3.514777 ATGTGATCGCACTTGACGT 57.485 47.368 11.96 0.00 45.36 4.34
138 139 0.522626 TTGCCATGTGATCGCACTTG 59.477 50.000 11.96 7.00 45.36 3.16
139 140 1.068333 GTTTGCCATGTGATCGCACTT 60.068 47.619 11.96 0.00 45.36 3.16
140 141 0.523072 GTTTGCCATGTGATCGCACT 59.477 50.000 11.96 0.00 45.36 4.40
141 142 0.456653 GGTTTGCCATGTGATCGCAC 60.457 55.000 11.96 0.00 38.97 5.34
142 143 1.882311 GGTTTGCCATGTGATCGCA 59.118 52.632 12.12 12.12 34.09 5.10
143 144 1.226379 CGGTTTGCCATGTGATCGC 60.226 57.895 0.00 0.00 34.09 4.58
144 145 0.801872 TTCGGTTTGCCATGTGATCG 59.198 50.000 0.00 0.00 34.09 3.69
145 146 1.539388 TGTTCGGTTTGCCATGTGATC 59.461 47.619 0.00 0.00 34.09 2.92
146 147 1.614996 TGTTCGGTTTGCCATGTGAT 58.385 45.000 0.00 0.00 34.09 3.06
147 148 1.614996 ATGTTCGGTTTGCCATGTGA 58.385 45.000 0.00 0.00 34.09 3.58
148 149 2.437200 AATGTTCGGTTTGCCATGTG 57.563 45.000 0.00 0.00 34.09 3.21
149 150 3.389221 GAAAATGTTCGGTTTGCCATGT 58.611 40.909 0.00 0.00 34.09 3.21
161 162 7.831750 ACTAAATTTGTCGTCGAAAATGTTC 57.168 32.000 0.00 0.00 0.00 3.18
162 163 9.161684 GTAACTAAATTTGTCGTCGAAAATGTT 57.838 29.630 0.00 9.28 0.00 2.71
163 164 7.528182 CGTAACTAAATTTGTCGTCGAAAATGT 59.472 33.333 0.00 5.09 0.00 2.71
164 165 7.457943 GCGTAACTAAATTTGTCGTCGAAAATG 60.458 37.037 0.00 0.00 0.00 2.32
165 166 6.517374 GCGTAACTAAATTTGTCGTCGAAAAT 59.483 34.615 0.00 4.47 0.00 1.82
166 167 5.840267 GCGTAACTAAATTTGTCGTCGAAAA 59.160 36.000 0.00 0.00 0.00 2.29
167 168 5.365133 GCGTAACTAAATTTGTCGTCGAAA 58.635 37.500 0.00 0.00 0.00 3.46
168 169 4.431471 CGCGTAACTAAATTTGTCGTCGAA 60.431 41.667 0.00 0.00 0.00 3.71
169 170 3.057999 CGCGTAACTAAATTTGTCGTCGA 59.942 43.478 0.00 0.00 0.00 4.20
170 171 3.057999 TCGCGTAACTAAATTTGTCGTCG 59.942 43.478 5.77 2.21 0.00 5.12
171 172 4.489841 CCTCGCGTAACTAAATTTGTCGTC 60.490 45.833 5.77 0.00 0.00 4.20
172 173 3.365820 CCTCGCGTAACTAAATTTGTCGT 59.634 43.478 5.77 0.00 0.00 4.34
173 174 3.609373 TCCTCGCGTAACTAAATTTGTCG 59.391 43.478 5.77 0.18 0.00 4.35
174 175 5.713822 ATCCTCGCGTAACTAAATTTGTC 57.286 39.130 5.77 0.00 0.00 3.18
175 176 7.781548 ATAATCCTCGCGTAACTAAATTTGT 57.218 32.000 5.77 0.00 0.00 2.83
183 184 9.538508 AACTAAAATTATAATCCTCGCGTAACT 57.461 29.630 5.77 0.00 0.00 2.24
184 185 9.577003 CAACTAAAATTATAATCCTCGCGTAAC 57.423 33.333 5.77 0.00 0.00 2.50
185 186 8.767085 CCAACTAAAATTATAATCCTCGCGTAA 58.233 33.333 5.77 0.00 0.00 3.18
186 187 7.095523 GCCAACTAAAATTATAATCCTCGCGTA 60.096 37.037 5.77 0.00 0.00 4.42
187 188 6.293244 GCCAACTAAAATTATAATCCTCGCGT 60.293 38.462 5.77 0.00 0.00 6.01
188 189 6.077838 GCCAACTAAAATTATAATCCTCGCG 58.922 40.000 0.00 0.00 0.00 5.87
189 190 6.966021 TGCCAACTAAAATTATAATCCTCGC 58.034 36.000 0.00 0.00 0.00 5.03
190 191 7.591426 GCTTGCCAACTAAAATTATAATCCTCG 59.409 37.037 0.00 0.00 0.00 4.63
191 192 8.413229 TGCTTGCCAACTAAAATTATAATCCTC 58.587 33.333 0.00 0.00 0.00 3.71
192 193 8.305046 TGCTTGCCAACTAAAATTATAATCCT 57.695 30.769 0.00 0.00 0.00 3.24
193 194 8.981647 CATGCTTGCCAACTAAAATTATAATCC 58.018 33.333 0.00 0.00 0.00 3.01
194 195 9.748708 TCATGCTTGCCAACTAAAATTATAATC 57.251 29.630 0.00 0.00 0.00 1.75
200 201 9.452287 AAATTATCATGCTTGCCAACTAAAATT 57.548 25.926 0.00 0.00 0.00 1.82
201 202 9.452287 AAAATTATCATGCTTGCCAACTAAAAT 57.548 25.926 0.00 0.00 0.00 1.82
202 203 8.719648 CAAAATTATCATGCTTGCCAACTAAAA 58.280 29.630 0.00 0.00 0.00 1.52
203 204 7.877097 ACAAAATTATCATGCTTGCCAACTAAA 59.123 29.630 0.00 0.00 0.00 1.85
204 205 7.331440 CACAAAATTATCATGCTTGCCAACTAA 59.669 33.333 0.00 0.00 0.00 2.24
205 206 6.812656 CACAAAATTATCATGCTTGCCAACTA 59.187 34.615 0.00 0.00 0.00 2.24
206 207 5.640357 CACAAAATTATCATGCTTGCCAACT 59.360 36.000 0.00 0.00 0.00 3.16
207 208 5.671825 GCACAAAATTATCATGCTTGCCAAC 60.672 40.000 0.00 0.00 33.44 3.77
208 209 4.392445 GCACAAAATTATCATGCTTGCCAA 59.608 37.500 0.00 0.00 33.44 4.52
209 210 3.933955 GCACAAAATTATCATGCTTGCCA 59.066 39.130 0.00 0.00 33.44 4.92
210 211 4.186159 AGCACAAAATTATCATGCTTGCC 58.814 39.130 0.00 0.00 44.01 4.52
215 216 6.956299 AACTGAAGCACAAAATTATCATGC 57.044 33.333 0.00 0.00 36.52 4.06
216 217 8.301730 ACAAACTGAAGCACAAAATTATCATG 57.698 30.769 0.00 0.00 0.00 3.07
217 218 8.891671 AACAAACTGAAGCACAAAATTATCAT 57.108 26.923 0.00 0.00 0.00 2.45
218 219 8.715191 AAACAAACTGAAGCACAAAATTATCA 57.285 26.923 0.00 0.00 0.00 2.15
219 220 9.034544 AGAAACAAACTGAAGCACAAAATTATC 57.965 29.630 0.00 0.00 0.00 1.75
220 221 8.947055 AGAAACAAACTGAAGCACAAAATTAT 57.053 26.923 0.00 0.00 0.00 1.28
221 222 8.655092 CAAGAAACAAACTGAAGCACAAAATTA 58.345 29.630 0.00 0.00 0.00 1.40
222 223 7.387397 TCAAGAAACAAACTGAAGCACAAAATT 59.613 29.630 0.00 0.00 0.00 1.82
223 224 6.873076 TCAAGAAACAAACTGAAGCACAAAAT 59.127 30.769 0.00 0.00 0.00 1.82
224 225 6.219473 TCAAGAAACAAACTGAAGCACAAAA 58.781 32.000 0.00 0.00 0.00 2.44
225 226 5.777802 TCAAGAAACAAACTGAAGCACAAA 58.222 33.333 0.00 0.00 0.00 2.83
226 227 5.384063 TCAAGAAACAAACTGAAGCACAA 57.616 34.783 0.00 0.00 0.00 3.33
227 228 5.581126 ATCAAGAAACAAACTGAAGCACA 57.419 34.783 0.00 0.00 0.00 4.57
228 229 6.959361 TCTATCAAGAAACAAACTGAAGCAC 58.041 36.000 0.00 0.00 0.00 4.40
229 230 7.566760 TTCTATCAAGAAACAAACTGAAGCA 57.433 32.000 0.00 0.00 38.81 3.91
242 243 3.438781 ACGCGGCAATTTTCTATCAAGAA 59.561 39.130 12.47 0.00 40.03 2.52
243 244 3.006940 ACGCGGCAATTTTCTATCAAGA 58.993 40.909 12.47 0.00 0.00 3.02
244 245 3.100817 CACGCGGCAATTTTCTATCAAG 58.899 45.455 12.47 0.00 0.00 3.02
245 246 2.486203 ACACGCGGCAATTTTCTATCAA 59.514 40.909 12.47 0.00 0.00 2.57
246 247 2.080693 ACACGCGGCAATTTTCTATCA 58.919 42.857 12.47 0.00 0.00 2.15
247 248 2.538939 GGACACGCGGCAATTTTCTATC 60.539 50.000 12.47 0.00 0.00 2.08
248 249 1.400494 GGACACGCGGCAATTTTCTAT 59.600 47.619 12.47 0.00 0.00 1.98
249 250 0.800012 GGACACGCGGCAATTTTCTA 59.200 50.000 12.47 0.00 0.00 2.10
250 251 1.169661 TGGACACGCGGCAATTTTCT 61.170 50.000 12.47 0.00 0.00 2.52
251 252 1.001745 GTGGACACGCGGCAATTTTC 61.002 55.000 12.47 0.00 0.00 2.29
252 253 1.007849 GTGGACACGCGGCAATTTT 60.008 52.632 12.47 0.00 0.00 1.82
253 254 0.604243 TAGTGGACACGCGGCAATTT 60.604 50.000 12.47 0.00 36.20 1.82
254 255 0.604243 TTAGTGGACACGCGGCAATT 60.604 50.000 12.47 0.00 36.20 2.32
255 256 1.004320 TTAGTGGACACGCGGCAAT 60.004 52.632 12.47 0.00 36.20 3.56
256 257 1.957186 GTTAGTGGACACGCGGCAA 60.957 57.895 12.47 0.00 36.20 4.52
257 258 2.356553 GTTAGTGGACACGCGGCA 60.357 61.111 12.47 0.00 36.20 5.69
258 259 1.666872 AAGTTAGTGGACACGCGGC 60.667 57.895 12.47 0.00 36.20 6.53
259 260 1.897398 GCAAGTTAGTGGACACGCGG 61.897 60.000 12.47 1.27 36.20 6.46
260 261 1.491563 GCAAGTTAGTGGACACGCG 59.508 57.895 3.53 3.53 36.20 6.01
261 262 0.882927 TGGCAAGTTAGTGGACACGC 60.883 55.000 0.00 0.00 36.20 5.34
262 263 1.732259 GATGGCAAGTTAGTGGACACG 59.268 52.381 0.00 0.00 36.20 4.49
263 264 2.084546 GGATGGCAAGTTAGTGGACAC 58.915 52.381 0.00 0.00 0.00 3.67
264 265 1.985159 AGGATGGCAAGTTAGTGGACA 59.015 47.619 0.00 0.00 0.00 4.02
265 266 2.749621 CAAGGATGGCAAGTTAGTGGAC 59.250 50.000 0.00 0.00 0.00 4.02
266 267 2.375174 ACAAGGATGGCAAGTTAGTGGA 59.625 45.455 0.00 0.00 0.00 4.02
267 268 2.489329 CACAAGGATGGCAAGTTAGTGG 59.511 50.000 0.00 0.00 0.00 4.00
268 269 3.149196 ACACAAGGATGGCAAGTTAGTG 58.851 45.455 10.02 10.02 0.00 2.74
269 270 3.181445 TGACACAAGGATGGCAAGTTAGT 60.181 43.478 0.00 0.00 33.52 2.24
270 271 3.189287 GTGACACAAGGATGGCAAGTTAG 59.811 47.826 0.00 0.00 40.05 2.34
271 272 3.146066 GTGACACAAGGATGGCAAGTTA 58.854 45.455 0.00 0.00 40.05 2.24
272 273 1.956477 GTGACACAAGGATGGCAAGTT 59.044 47.619 0.00 0.00 40.05 2.66
273 274 1.143684 AGTGACACAAGGATGGCAAGT 59.856 47.619 8.59 0.00 40.05 3.16
274 275 1.901591 AGTGACACAAGGATGGCAAG 58.098 50.000 8.59 0.00 40.05 4.01
275 276 2.105649 TGTAGTGACACAAGGATGGCAA 59.894 45.455 8.59 0.00 40.05 4.52
276 277 1.696884 TGTAGTGACACAAGGATGGCA 59.303 47.619 8.59 0.00 34.28 4.92
277 278 2.472695 TGTAGTGACACAAGGATGGC 57.527 50.000 8.59 0.00 0.00 4.40
278 279 4.379813 GCAATTGTAGTGACACAAGGATGG 60.380 45.833 8.59 0.00 41.48 3.51
287 288 3.326836 TCGATGGCAATTGTAGTGACA 57.673 42.857 7.40 0.00 38.70 3.58
385 393 7.761038 AATGAAGATCTACGGAAACCTTTTT 57.239 32.000 0.00 0.00 0.00 1.94
386 394 7.761038 AAATGAAGATCTACGGAAACCTTTT 57.239 32.000 0.00 0.00 0.00 2.27
387 395 7.761038 AAAATGAAGATCTACGGAAACCTTT 57.239 32.000 0.00 0.00 0.00 3.11
388 396 7.761038 AAAAATGAAGATCTACGGAAACCTT 57.239 32.000 0.00 0.00 0.00 3.50
466 474 5.541101 GGGTTTCTTTTAGCCTTCCCTAAAA 59.459 40.000 6.85 6.85 42.10 1.52
635 681 3.136123 CGGGGGATGCAACTGCTG 61.136 66.667 2.95 0.00 42.66 4.41
636 682 2.424842 TTTCGGGGGATGCAACTGCT 62.425 55.000 2.95 0.00 42.66 4.24
637 683 1.322538 ATTTCGGGGGATGCAACTGC 61.323 55.000 0.00 0.00 42.50 4.40
638 684 1.134946 GAATTTCGGGGGATGCAACTG 59.865 52.381 0.00 0.00 0.00 3.16
639 685 1.474330 GAATTTCGGGGGATGCAACT 58.526 50.000 0.00 0.00 0.00 3.16
640 686 0.100503 CGAATTTCGGGGGATGCAAC 59.899 55.000 10.95 0.00 36.00 4.17
641 687 0.034960 TCGAATTTCGGGGGATGCAA 60.035 50.000 18.02 0.00 40.88 4.08
642 688 0.034960 TTCGAATTTCGGGGGATGCA 60.035 50.000 18.02 0.00 40.88 3.96
950 1004 2.666098 GGTTAGGCGGGGAAGCTGA 61.666 63.158 0.00 0.00 37.29 4.26
1146 1200 1.026182 CCGAGCCTGCTGTTTATGCA 61.026 55.000 0.00 0.00 38.81 3.96
1191 1249 4.144418 CGGAAACCGGAACCAACA 57.856 55.556 9.46 0.00 44.15 3.33
1221 1279 1.001641 AGCAAGCAAGCGAGGGATT 60.002 52.632 0.00 0.00 40.15 3.01
1382 1440 0.392706 TCTTGCTGCGGAGAAGACAA 59.607 50.000 8.65 0.94 0.00 3.18
1389 1447 1.598132 CTCAATGATCTTGCTGCGGAG 59.402 52.381 0.00 0.00 0.00 4.63
1419 1477 3.375299 GCACGGAGCTTGTTAATCTCAAT 59.625 43.478 0.00 0.00 41.15 2.57
1451 1509 1.423056 GTTCTGCTGATGCGTGCTC 59.577 57.895 0.00 0.00 43.34 4.26
1515 1573 7.735917 TCTAAACAAGAACAGAGATGGAGAAA 58.264 34.615 0.00 0.00 0.00 2.52
1740 1948 5.526115 ACAACATGTGATGCTTTCTTTCAG 58.474 37.500 0.00 0.00 0.00 3.02
1767 1975 4.027437 ACTACACAACCCCACAAAACAAT 58.973 39.130 0.00 0.00 0.00 2.71
1871 2079 7.069569 TGAAAATCTCGTAAAGAAAAGAAGCG 58.930 34.615 0.00 0.00 37.61 4.68
1993 2203 4.906618 AGCCTTTACTTTAAGCACTGCTA 58.093 39.130 3.33 0.00 38.25 3.49
2176 2386 6.656902 ACATGAAGAGCCATCTATTTTGAGA 58.343 36.000 0.00 0.00 33.45 3.27
2186 2396 8.789825 ATTATAGATGAACATGAAGAGCCATC 57.210 34.615 0.00 3.09 0.00 3.51
2268 2478 0.390866 ATGAGCTTCGACTGGTGCAG 60.391 55.000 0.00 0.00 37.52 4.41
2348 2558 7.732222 ACATCTAAGAAGGAGAAGAATGAGT 57.268 36.000 0.00 0.00 0.00 3.41
2401 2611 9.171877 GGAAAATCAAAACCATAAAATGCCATA 57.828 29.630 0.00 0.00 0.00 2.74
2418 2628 8.528044 AAGTTGTGTTAAGTAGGGAAAATCAA 57.472 30.769 0.00 0.00 0.00 2.57
2716 2926 5.575995 GGTCTCTTTTATACCTTCACGTGAC 59.424 44.000 19.90 0.73 0.00 3.67
2720 2930 5.929992 TGTTGGTCTCTTTTATACCTTCACG 59.070 40.000 0.00 0.00 34.23 4.35
2851 3061 7.360113 ACAAAAATTGGTCAACCTACAATCT 57.640 32.000 0.10 0.00 34.00 2.40
2928 3138 1.093159 GCTTCTGCCATCTCACAAGG 58.907 55.000 0.00 0.00 0.00 3.61
2965 3175 3.243873 TGAAGGAACTGCAGTGTCTGTAG 60.244 47.826 22.49 11.95 40.52 2.74
3051 3261 4.687948 ACAAAGAACAGATGAGACATGTCG 59.312 41.667 19.85 7.36 34.09 4.35
3054 3264 5.471116 TGGAACAAAGAACAGATGAGACATG 59.529 40.000 0.00 0.00 31.92 3.21
3390 3600 7.740346 GCACCGTGATAACGATTAATAAATCTG 59.260 37.037 3.47 0.00 39.56 2.90
3404 3614 1.156736 ACAAGCAGCACCGTGATAAC 58.843 50.000 1.65 0.00 0.00 1.89
3475 3685 0.106967 GCCTCAGGGTCCTCAATTCC 60.107 60.000 0.00 0.00 34.45 3.01
3514 3724 4.881850 GTGGATTGGGATCGTATTCTTTGT 59.118 41.667 0.00 0.00 32.84 2.83
3518 3728 3.071602 CAGGTGGATTGGGATCGTATTCT 59.928 47.826 0.00 0.00 32.84 2.40
3539 3749 2.225491 GCATTACGTTGAGTTTCTGCCA 59.775 45.455 0.00 0.00 0.00 4.92
3623 3833 2.717639 AGAACCTCAAGTGCAAGTGT 57.282 45.000 0.00 0.00 0.00 3.55
3625 3835 6.096846 ACAAATTAAGAACCTCAAGTGCAAGT 59.903 34.615 0.00 0.00 0.00 3.16
4115 4333 4.603989 TGATACGGTGGTTCACTACAAA 57.396 40.909 0.00 0.00 34.40 2.83
4380 4598 2.549754 TCGCTTTGCTTCTCTTCTTTGG 59.450 45.455 0.00 0.00 0.00 3.28
4387 4605 0.952984 GGCTGTCGCTTTGCTTCTCT 60.953 55.000 0.00 0.00 36.09 3.10
4758 4977 1.069049 GCTGTTGGAATTGGCACTGTT 59.931 47.619 0.00 0.00 0.00 3.16
5285 5657 6.480320 ACTCCGCATATTAGATTTGTCTGAAC 59.520 38.462 0.00 0.00 0.00 3.18
5307 5679 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
5381 6702 7.671302 TCTGAGACATATTTATAGTGGGCTTC 58.329 38.462 0.00 0.00 0.00 3.86
5384 6705 8.754080 AGTATCTGAGACATATTTATAGTGGGC 58.246 37.037 5.12 0.00 0.00 5.36
5397 6718 9.507329 AAATTAACAACACAGTATCTGAGACAT 57.493 29.630 5.12 0.00 35.18 3.06
5398 6719 8.902540 AAATTAACAACACAGTATCTGAGACA 57.097 30.769 5.12 0.00 35.18 3.41
5527 6849 0.618458 GAAAAAGGGGGAAATGGGCC 59.382 55.000 0.00 0.00 0.00 5.80



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.