Multiple sequence alignment - TraesCS6A01G364300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G364300 | chr6A | 100.000 | 5550 | 0 | 0 | 1 | 5550 | 593006024 | 593011573 | 0.000000e+00 | 10250.0 |
1 | TraesCS6A01G364300 | chr6A | 98.780 | 1639 | 19 | 1 | 3744 | 5381 | 593027304 | 593028942 | 0.000000e+00 | 2915.0 |
2 | TraesCS6A01G364300 | chr6A | 87.739 | 261 | 32 | 0 | 5071 | 5331 | 471137168 | 471136908 | 6.990000e-79 | 305.0 |
3 | TraesCS6A01G364300 | chr6A | 82.101 | 257 | 36 | 6 | 116 | 372 | 228519630 | 228519876 | 1.570000e-50 | 211.0 |
4 | TraesCS6A01G364300 | chr6A | 83.486 | 218 | 29 | 4 | 149 | 359 | 509284026 | 509284243 | 4.390000e-46 | 196.0 |
5 | TraesCS6A01G364300 | chr6A | 96.610 | 59 | 1 | 1 | 1089 | 1146 | 32534077 | 32534019 | 4.580000e-16 | 97.1 |
6 | TraesCS6A01G364300 | chr6A | 94.915 | 59 | 2 | 1 | 1089 | 1146 | 32560270 | 32560212 | 2.130000e-14 | 91.6 |
7 | TraesCS6A01G364300 | chr6A | 96.429 | 56 | 1 | 1 | 1089 | 1143 | 588755889 | 588755944 | 2.130000e-14 | 91.6 |
8 | TraesCS6A01G364300 | chr6D | 96.272 | 3541 | 107 | 11 | 1544 | 5072 | 446442400 | 446445927 | 0.000000e+00 | 5784.0 |
9 | TraesCS6A01G364300 | chr6D | 90.503 | 1432 | 85 | 24 | 280 | 1699 | 446441013 | 446442405 | 0.000000e+00 | 1844.0 |
10 | TraesCS6A01G364300 | chr6D | 87.981 | 208 | 11 | 7 | 5330 | 5536 | 446445926 | 446446120 | 3.340000e-57 | 233.0 |
11 | TraesCS6A01G364300 | chr6B | 96.115 | 3243 | 100 | 12 | 1544 | 4778 | 674711327 | 674714551 | 0.000000e+00 | 5267.0 |
12 | TraesCS6A01G364300 | chr6B | 94.553 | 1230 | 40 | 11 | 483 | 1699 | 674710117 | 674711332 | 0.000000e+00 | 1875.0 |
13 | TraesCS6A01G364300 | chr6B | 87.526 | 489 | 48 | 4 | 1 | 487 | 674555215 | 674554738 | 2.260000e-153 | 553.0 |
14 | TraesCS6A01G364300 | chr6B | 88.889 | 306 | 22 | 4 | 4766 | 5068 | 674715694 | 674715990 | 3.160000e-97 | 366.0 |
15 | TraesCS6A01G364300 | chr6B | 89.565 | 230 | 19 | 3 | 4842 | 5068 | 674714764 | 674714991 | 2.530000e-73 | 287.0 |
16 | TraesCS6A01G364300 | chr6B | 81.743 | 241 | 33 | 6 | 134 | 372 | 394694002 | 394693771 | 2.040000e-44 | 191.0 |
17 | TraesCS6A01G364300 | chr3A | 88.346 | 266 | 31 | 0 | 5068 | 5333 | 217857563 | 217857828 | 2.490000e-83 | 320.0 |
18 | TraesCS6A01G364300 | chr7B | 88.060 | 268 | 29 | 3 | 5066 | 5332 | 69589510 | 69589775 | 1.160000e-81 | 315.0 |
19 | TraesCS6A01G364300 | chr7B | 92.727 | 55 | 3 | 1 | 1092 | 1146 | 559713110 | 559713057 | 1.660000e-10 | 78.7 |
20 | TraesCS6A01G364300 | chr7B | 88.525 | 61 | 5 | 2 | 270 | 328 | 143862461 | 143862401 | 7.710000e-09 | 73.1 |
21 | TraesCS6A01G364300 | chr4A | 87.739 | 261 | 32 | 0 | 5071 | 5331 | 137534831 | 137534571 | 6.990000e-79 | 305.0 |
22 | TraesCS6A01G364300 | chr4A | 95.455 | 44 | 1 | 1 | 1089 | 1131 | 592072995 | 592072952 | 9.980000e-08 | 69.4 |
23 | TraesCS6A01G364300 | chr2A | 87.739 | 261 | 32 | 0 | 5071 | 5331 | 109654251 | 109653991 | 6.990000e-79 | 305.0 |
24 | TraesCS6A01G364300 | chr2A | 85.614 | 285 | 37 | 4 | 5051 | 5334 | 745589111 | 745589392 | 4.200000e-76 | 296.0 |
25 | TraesCS6A01G364300 | chr1A | 87.739 | 261 | 32 | 0 | 5071 | 5331 | 354686510 | 354686250 | 6.990000e-79 | 305.0 |
26 | TraesCS6A01G364300 | chr1A | 86.667 | 270 | 36 | 0 | 5068 | 5337 | 554877925 | 554878194 | 3.250000e-77 | 300.0 |
27 | TraesCS6A01G364300 | chr1A | 98.438 | 64 | 1 | 0 | 1080 | 1143 | 389228048 | 389228111 | 4.540000e-21 | 113.0 |
28 | TraesCS6A01G364300 | chr7D | 79.688 | 192 | 31 | 6 | 177 | 362 | 606556047 | 606556236 | 1.250000e-26 | 132.0 |
29 | TraesCS6A01G364300 | chr2B | 76.555 | 209 | 41 | 6 | 155 | 362 | 6178338 | 6178137 | 2.110000e-19 | 108.0 |
30 | TraesCS6A01G364300 | chr2D | 75.301 | 166 | 35 | 5 | 163 | 324 | 521589118 | 521588955 | 2.140000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G364300 | chr6A | 593006024 | 593011573 | 5549 | False | 10250.000000 | 10250 | 100.000000 | 1 | 5550 | 1 | chr6A.!!$F4 | 5549 |
1 | TraesCS6A01G364300 | chr6A | 593027304 | 593028942 | 1638 | False | 2915.000000 | 2915 | 98.780000 | 3744 | 5381 | 1 | chr6A.!!$F5 | 1637 |
2 | TraesCS6A01G364300 | chr6D | 446441013 | 446446120 | 5107 | False | 2620.333333 | 5784 | 91.585333 | 280 | 5536 | 3 | chr6D.!!$F1 | 5256 |
3 | TraesCS6A01G364300 | chr6B | 674710117 | 674715990 | 5873 | False | 1948.750000 | 5267 | 92.280500 | 483 | 5068 | 4 | chr6B.!!$F1 | 4585 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
155 | 156 | 0.097674 | GTCAAGTGCGATCACATGGC | 59.902 | 55.000 | 0.00 | 0.0 | 45.49 | 4.40 | F |
156 | 157 | 0.321475 | TCAAGTGCGATCACATGGCA | 60.321 | 50.000 | 0.00 | 0.0 | 45.49 | 4.92 | F |
160 | 161 | 0.456653 | GTGCGATCACATGGCAAACC | 60.457 | 55.000 | 0.00 | 0.0 | 45.50 | 3.27 | F |
272 | 273 | 0.604243 | AAATTGCCGCGTGTCCACTA | 60.604 | 50.000 | 4.92 | 0.0 | 0.00 | 2.74 | F |
273 | 274 | 0.604243 | AATTGCCGCGTGTCCACTAA | 60.604 | 50.000 | 4.92 | 0.0 | 0.00 | 2.24 | F |
2268 | 2478 | 0.603065 | AAAGCCGCACCTTCCAAATC | 59.397 | 50.000 | 0.00 | 0.0 | 0.00 | 2.17 | F |
2401 | 2611 | 0.319405 | GCTTGGCAACCATTTCAGCT | 59.681 | 50.000 | 0.00 | 0.0 | 32.67 | 4.24 | F |
4380 | 4598 | 1.135915 | AGATGTCGTGATGGAGCAGAC | 59.864 | 52.381 | 0.00 | 0.0 | 0.00 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1382 | 1440 | 0.392706 | TCTTGCTGCGGAGAAGACAA | 59.607 | 50.000 | 8.65 | 0.94 | 0.00 | 3.18 | R |
1451 | 1509 | 1.423056 | GTTCTGCTGATGCGTGCTC | 59.577 | 57.895 | 0.00 | 0.00 | 43.34 | 4.26 | R |
1767 | 1975 | 4.027437 | ACTACACAACCCCACAAAACAAT | 58.973 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 | R |
2268 | 2478 | 0.390866 | ATGAGCTTCGACTGGTGCAG | 60.391 | 55.000 | 0.00 | 0.00 | 37.52 | 4.41 | R |
2348 | 2558 | 7.732222 | ACATCTAAGAAGGAGAAGAATGAGT | 57.268 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 | R |
3475 | 3685 | 0.106967 | GCCTCAGGGTCCTCAATTCC | 60.107 | 60.000 | 0.00 | 0.00 | 34.45 | 3.01 | R |
4387 | 4605 | 0.952984 | GGCTGTCGCTTTGCTTCTCT | 60.953 | 55.000 | 0.00 | 0.00 | 36.09 | 3.10 | R |
5527 | 6849 | 0.618458 | GAAAAAGGGGGAAATGGGCC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.428746 | TGGTTGTTTTGTCGTTCATGG | 57.571 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
21 | 22 | 3.017442 | TGGTTGTTTTGTCGTTCATGGA | 58.983 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
22 | 23 | 3.181495 | TGGTTGTTTTGTCGTTCATGGAC | 60.181 | 43.478 | 0.00 | 0.00 | 34.99 | 4.02 |
23 | 24 | 3.368495 | GTTGTTTTGTCGTTCATGGACC | 58.632 | 45.455 | 0.00 | 0.00 | 33.46 | 4.46 |
24 | 25 | 2.644676 | TGTTTTGTCGTTCATGGACCA | 58.355 | 42.857 | 0.00 | 0.00 | 33.46 | 4.02 |
25 | 26 | 3.218453 | TGTTTTGTCGTTCATGGACCAT | 58.782 | 40.909 | 0.00 | 0.00 | 33.46 | 3.55 |
26 | 27 | 3.004210 | TGTTTTGTCGTTCATGGACCATG | 59.996 | 43.478 | 26.10 | 26.10 | 42.60 | 3.66 |
36 | 37 | 4.753516 | TCATGGACCATGACGTAATCTT | 57.246 | 40.909 | 29.67 | 0.00 | 44.60 | 2.40 |
37 | 38 | 4.693283 | TCATGGACCATGACGTAATCTTC | 58.307 | 43.478 | 29.67 | 0.00 | 44.60 | 2.87 |
38 | 39 | 4.161377 | TCATGGACCATGACGTAATCTTCA | 59.839 | 41.667 | 29.67 | 6.53 | 44.60 | 3.02 |
39 | 40 | 4.753516 | TGGACCATGACGTAATCTTCAT | 57.246 | 40.909 | 0.00 | 0.00 | 33.73 | 2.57 |
40 | 41 | 5.097742 | TGGACCATGACGTAATCTTCATT | 57.902 | 39.130 | 0.00 | 0.00 | 31.61 | 2.57 |
41 | 42 | 6.228616 | TGGACCATGACGTAATCTTCATTA | 57.771 | 37.500 | 0.00 | 0.00 | 31.61 | 1.90 |
42 | 43 | 6.826668 | TGGACCATGACGTAATCTTCATTAT | 58.173 | 36.000 | 0.00 | 0.00 | 31.61 | 1.28 |
43 | 44 | 6.705825 | TGGACCATGACGTAATCTTCATTATG | 59.294 | 38.462 | 0.00 | 0.00 | 37.47 | 1.90 |
44 | 45 | 6.706270 | GGACCATGACGTAATCTTCATTATGT | 59.294 | 38.462 | 0.00 | 0.20 | 44.29 | 2.29 |
45 | 46 | 7.226720 | GGACCATGACGTAATCTTCATTATGTT | 59.773 | 37.037 | 0.00 | 0.00 | 42.48 | 2.71 |
46 | 47 | 8.506168 | ACCATGACGTAATCTTCATTATGTTT | 57.494 | 30.769 | 0.00 | 0.00 | 42.48 | 2.83 |
47 | 48 | 8.397906 | ACCATGACGTAATCTTCATTATGTTTG | 58.602 | 33.333 | 0.00 | 3.82 | 42.48 | 2.93 |
48 | 49 | 7.857389 | CCATGACGTAATCTTCATTATGTTTGG | 59.143 | 37.037 | 0.00 | 11.62 | 42.48 | 3.28 |
49 | 50 | 7.315247 | TGACGTAATCTTCATTATGTTTGGG | 57.685 | 36.000 | 0.00 | 0.00 | 42.48 | 4.12 |
50 | 51 | 7.106890 | TGACGTAATCTTCATTATGTTTGGGA | 58.893 | 34.615 | 0.00 | 0.00 | 42.48 | 4.37 |
51 | 52 | 7.279981 | TGACGTAATCTTCATTATGTTTGGGAG | 59.720 | 37.037 | 0.00 | 0.00 | 42.48 | 4.30 |
52 | 53 | 6.542370 | ACGTAATCTTCATTATGTTTGGGAGG | 59.458 | 38.462 | 0.00 | 0.00 | 40.46 | 4.30 |
53 | 54 | 5.859205 | AATCTTCATTATGTTTGGGAGGC | 57.141 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
54 | 55 | 4.591321 | TCTTCATTATGTTTGGGAGGCT | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 4.58 |
55 | 56 | 4.934356 | TCTTCATTATGTTTGGGAGGCTT | 58.066 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
56 | 57 | 5.332743 | TCTTCATTATGTTTGGGAGGCTTT | 58.667 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
57 | 58 | 5.185635 | TCTTCATTATGTTTGGGAGGCTTTG | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
58 | 59 | 4.415596 | TCATTATGTTTGGGAGGCTTTGT | 58.584 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
59 | 60 | 5.575157 | TCATTATGTTTGGGAGGCTTTGTA | 58.425 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
60 | 61 | 5.652014 | TCATTATGTTTGGGAGGCTTTGTAG | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
61 | 62 | 3.525800 | ATGTTTGGGAGGCTTTGTAGT | 57.474 | 42.857 | 0.00 | 0.00 | 0.00 | 2.73 |
62 | 63 | 3.306472 | TGTTTGGGAGGCTTTGTAGTT | 57.694 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
63 | 64 | 4.440826 | TGTTTGGGAGGCTTTGTAGTTA | 57.559 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
64 | 65 | 4.993028 | TGTTTGGGAGGCTTTGTAGTTAT | 58.007 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
65 | 66 | 4.764823 | TGTTTGGGAGGCTTTGTAGTTATG | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
66 | 67 | 3.644966 | TGGGAGGCTTTGTAGTTATGG | 57.355 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
67 | 68 | 2.916934 | TGGGAGGCTTTGTAGTTATGGT | 59.083 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
68 | 69 | 3.279434 | GGGAGGCTTTGTAGTTATGGTG | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
69 | 70 | 2.683362 | GGAGGCTTTGTAGTTATGGTGC | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
70 | 71 | 3.343617 | GAGGCTTTGTAGTTATGGTGCA | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
71 | 72 | 3.081804 | AGGCTTTGTAGTTATGGTGCAC | 58.918 | 45.455 | 8.80 | 8.80 | 0.00 | 4.57 |
72 | 73 | 3.081804 | GGCTTTGTAGTTATGGTGCACT | 58.918 | 45.455 | 17.98 | 0.00 | 0.00 | 4.40 |
73 | 74 | 3.506067 | GGCTTTGTAGTTATGGTGCACTT | 59.494 | 43.478 | 17.98 | 7.44 | 0.00 | 3.16 |
74 | 75 | 4.022329 | GGCTTTGTAGTTATGGTGCACTTT | 60.022 | 41.667 | 17.98 | 7.05 | 0.00 | 2.66 |
75 | 76 | 5.508994 | GGCTTTGTAGTTATGGTGCACTTTT | 60.509 | 40.000 | 17.98 | 4.40 | 0.00 | 2.27 |
76 | 77 | 5.983118 | GCTTTGTAGTTATGGTGCACTTTTT | 59.017 | 36.000 | 17.98 | 1.80 | 0.00 | 1.94 |
77 | 78 | 6.143919 | GCTTTGTAGTTATGGTGCACTTTTTC | 59.856 | 38.462 | 17.98 | 5.37 | 0.00 | 2.29 |
78 | 79 | 6.952773 | TTGTAGTTATGGTGCACTTTTTCT | 57.047 | 33.333 | 17.98 | 12.24 | 0.00 | 2.52 |
79 | 80 | 6.952773 | TGTAGTTATGGTGCACTTTTTCTT | 57.047 | 33.333 | 17.98 | 0.27 | 0.00 | 2.52 |
80 | 81 | 7.341445 | TGTAGTTATGGTGCACTTTTTCTTT | 57.659 | 32.000 | 17.98 | 0.00 | 0.00 | 2.52 |
81 | 82 | 8.453238 | TGTAGTTATGGTGCACTTTTTCTTTA | 57.547 | 30.769 | 17.98 | 0.00 | 0.00 | 1.85 |
82 | 83 | 8.904834 | TGTAGTTATGGTGCACTTTTTCTTTAA | 58.095 | 29.630 | 17.98 | 1.31 | 0.00 | 1.52 |
83 | 84 | 9.738832 | GTAGTTATGGTGCACTTTTTCTTTAAA | 57.261 | 29.630 | 17.98 | 0.00 | 0.00 | 1.52 |
85 | 86 | 9.660180 | AGTTATGGTGCACTTTTTCTTTAAAAA | 57.340 | 25.926 | 17.98 | 0.00 | 41.21 | 1.94 |
88 | 89 | 7.313951 | TGGTGCACTTTTTCTTTAAAAATGG | 57.686 | 32.000 | 17.98 | 0.00 | 42.22 | 3.16 |
89 | 90 | 6.881602 | TGGTGCACTTTTTCTTTAAAAATGGT | 59.118 | 30.769 | 17.98 | 0.00 | 42.22 | 3.55 |
90 | 91 | 8.041323 | TGGTGCACTTTTTCTTTAAAAATGGTA | 58.959 | 29.630 | 17.98 | 0.00 | 42.22 | 3.25 |
91 | 92 | 9.051679 | GGTGCACTTTTTCTTTAAAAATGGTAT | 57.948 | 29.630 | 17.98 | 0.00 | 42.22 | 2.73 |
92 | 93 | 9.862585 | GTGCACTTTTTCTTTAAAAATGGTATG | 57.137 | 29.630 | 10.32 | 0.00 | 42.22 | 2.39 |
93 | 94 | 9.823647 | TGCACTTTTTCTTTAAAAATGGTATGA | 57.176 | 25.926 | 0.00 | 0.00 | 42.22 | 2.15 |
132 | 133 | 7.878621 | AGATCTTGGAATCTGATAATACCCA | 57.121 | 36.000 | 0.00 | 0.00 | 34.68 | 4.51 |
133 | 134 | 8.280258 | AGATCTTGGAATCTGATAATACCCAA | 57.720 | 34.615 | 0.00 | 0.00 | 34.68 | 4.12 |
134 | 135 | 8.727149 | AGATCTTGGAATCTGATAATACCCAAA | 58.273 | 33.333 | 0.00 | 0.00 | 34.68 | 3.28 |
135 | 136 | 8.697507 | ATCTTGGAATCTGATAATACCCAAAC | 57.302 | 34.615 | 0.00 | 0.00 | 32.59 | 2.93 |
136 | 137 | 6.765989 | TCTTGGAATCTGATAATACCCAAACG | 59.234 | 38.462 | 0.00 | 0.00 | 32.59 | 3.60 |
137 | 138 | 5.996644 | TGGAATCTGATAATACCCAAACGT | 58.003 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
138 | 139 | 6.053005 | TGGAATCTGATAATACCCAAACGTC | 58.947 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
139 | 140 | 6.053005 | GGAATCTGATAATACCCAAACGTCA | 58.947 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
140 | 141 | 6.540914 | GGAATCTGATAATACCCAAACGTCAA | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
141 | 142 | 7.254795 | GGAATCTGATAATACCCAAACGTCAAG | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
142 | 143 | 6.045072 | TCTGATAATACCCAAACGTCAAGT | 57.955 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
143 | 144 | 5.872617 | TCTGATAATACCCAAACGTCAAGTG | 59.127 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
144 | 145 | 4.393680 | TGATAATACCCAAACGTCAAGTGC | 59.606 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
145 | 146 | 1.153353 | ATACCCAAACGTCAAGTGCG | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
146 | 147 | 0.104487 | TACCCAAACGTCAAGTGCGA | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
147 | 148 | 0.534203 | ACCCAAACGTCAAGTGCGAT | 60.534 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
148 | 149 | 0.165944 | CCCAAACGTCAAGTGCGATC | 59.834 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
149 | 150 | 0.865111 | CCAAACGTCAAGTGCGATCA | 59.135 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
150 | 151 | 1.398451 | CCAAACGTCAAGTGCGATCAC | 60.398 | 52.381 | 0.00 | 0.00 | 43.44 | 3.06 |
151 | 152 | 1.260297 | CAAACGTCAAGTGCGATCACA | 59.740 | 47.619 | 0.00 | 0.00 | 45.49 | 3.58 |
152 | 153 | 1.795768 | AACGTCAAGTGCGATCACAT | 58.204 | 45.000 | 0.00 | 0.00 | 45.49 | 3.21 |
153 | 154 | 1.070821 | ACGTCAAGTGCGATCACATG | 58.929 | 50.000 | 0.00 | 0.00 | 45.49 | 3.21 |
154 | 155 | 0.371301 | CGTCAAGTGCGATCACATGG | 59.629 | 55.000 | 0.00 | 0.00 | 45.49 | 3.66 |
155 | 156 | 0.097674 | GTCAAGTGCGATCACATGGC | 59.902 | 55.000 | 0.00 | 0.00 | 45.49 | 4.40 |
156 | 157 | 0.321475 | TCAAGTGCGATCACATGGCA | 60.321 | 50.000 | 0.00 | 0.00 | 45.49 | 4.92 |
157 | 158 | 0.522626 | CAAGTGCGATCACATGGCAA | 59.477 | 50.000 | 0.00 | 0.00 | 45.50 | 4.52 |
158 | 159 | 1.068402 | CAAGTGCGATCACATGGCAAA | 60.068 | 47.619 | 0.00 | 0.00 | 45.50 | 3.68 |
159 | 160 | 0.523072 | AGTGCGATCACATGGCAAAC | 59.477 | 50.000 | 0.00 | 0.00 | 45.50 | 2.93 |
160 | 161 | 0.456653 | GTGCGATCACATGGCAAACC | 60.457 | 55.000 | 0.00 | 0.00 | 45.50 | 3.27 |
161 | 162 | 1.226379 | GCGATCACATGGCAAACCG | 60.226 | 57.895 | 0.00 | 0.00 | 39.70 | 4.44 |
162 | 163 | 1.643868 | GCGATCACATGGCAAACCGA | 61.644 | 55.000 | 0.00 | 0.00 | 39.70 | 4.69 |
163 | 164 | 0.801872 | CGATCACATGGCAAACCGAA | 59.198 | 50.000 | 0.00 | 0.00 | 39.70 | 4.30 |
164 | 165 | 1.465689 | CGATCACATGGCAAACCGAAC | 60.466 | 52.381 | 0.00 | 0.00 | 39.70 | 3.95 |
165 | 166 | 1.539388 | GATCACATGGCAAACCGAACA | 59.461 | 47.619 | 0.00 | 0.00 | 39.70 | 3.18 |
166 | 167 | 1.614996 | TCACATGGCAAACCGAACAT | 58.385 | 45.000 | 0.00 | 0.00 | 39.70 | 2.71 |
167 | 168 | 1.959985 | TCACATGGCAAACCGAACATT | 59.040 | 42.857 | 0.00 | 0.00 | 39.70 | 2.71 |
168 | 169 | 2.363680 | TCACATGGCAAACCGAACATTT | 59.636 | 40.909 | 0.00 | 0.00 | 39.70 | 2.32 |
169 | 170 | 3.129871 | CACATGGCAAACCGAACATTTT | 58.870 | 40.909 | 0.00 | 0.00 | 39.70 | 1.82 |
170 | 171 | 3.184178 | CACATGGCAAACCGAACATTTTC | 59.816 | 43.478 | 0.00 | 0.00 | 39.70 | 2.29 |
185 | 186 | 7.831750 | GAACATTTTCGACGACAAATTTAGT | 57.168 | 32.000 | 0.00 | 0.29 | 0.00 | 2.24 |
186 | 187 | 8.265220 | GAACATTTTCGACGACAAATTTAGTT | 57.735 | 30.769 | 0.00 | 7.86 | 0.00 | 2.24 |
187 | 188 | 9.372541 | GAACATTTTCGACGACAAATTTAGTTA | 57.627 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
188 | 189 | 8.703823 | ACATTTTCGACGACAAATTTAGTTAC | 57.296 | 30.769 | 0.00 | 0.00 | 0.00 | 2.50 |
189 | 190 | 7.528182 | ACATTTTCGACGACAAATTTAGTTACG | 59.472 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
190 | 191 | 4.551056 | TCGACGACAAATTTAGTTACGC | 57.449 | 40.909 | 0.00 | 0.00 | 0.00 | 4.42 |
191 | 192 | 3.057999 | TCGACGACAAATTTAGTTACGCG | 59.942 | 43.478 | 3.53 | 3.53 | 0.00 | 6.01 |
192 | 193 | 3.057999 | CGACGACAAATTTAGTTACGCGA | 59.942 | 43.478 | 15.93 | 0.00 | 0.00 | 5.87 |
193 | 194 | 4.552992 | GACGACAAATTTAGTTACGCGAG | 58.447 | 43.478 | 15.93 | 0.00 | 0.00 | 5.03 |
194 | 195 | 3.365820 | ACGACAAATTTAGTTACGCGAGG | 59.634 | 43.478 | 15.93 | 0.00 | 0.00 | 4.63 |
195 | 196 | 3.609373 | CGACAAATTTAGTTACGCGAGGA | 59.391 | 43.478 | 15.93 | 0.00 | 0.00 | 3.71 |
196 | 197 | 4.266976 | CGACAAATTTAGTTACGCGAGGAT | 59.733 | 41.667 | 15.93 | 0.00 | 0.00 | 3.24 |
197 | 198 | 5.220340 | CGACAAATTTAGTTACGCGAGGATT | 60.220 | 40.000 | 15.93 | 0.00 | 0.00 | 3.01 |
198 | 199 | 6.020440 | CGACAAATTTAGTTACGCGAGGATTA | 60.020 | 38.462 | 15.93 | 0.00 | 0.00 | 1.75 |
199 | 200 | 7.306399 | CGACAAATTTAGTTACGCGAGGATTAT | 60.306 | 37.037 | 15.93 | 0.00 | 0.00 | 1.28 |
200 | 201 | 8.876275 | ACAAATTTAGTTACGCGAGGATTATA | 57.124 | 30.769 | 15.93 | 0.00 | 0.00 | 0.98 |
201 | 202 | 9.316730 | ACAAATTTAGTTACGCGAGGATTATAA | 57.683 | 29.630 | 15.93 | 0.00 | 0.00 | 0.98 |
209 | 210 | 9.538508 | AGTTACGCGAGGATTATAATTTTAGTT | 57.461 | 29.630 | 15.93 | 0.00 | 0.00 | 2.24 |
210 | 211 | 9.577003 | GTTACGCGAGGATTATAATTTTAGTTG | 57.423 | 33.333 | 15.93 | 0.00 | 0.00 | 3.16 |
211 | 212 | 7.186021 | ACGCGAGGATTATAATTTTAGTTGG | 57.814 | 36.000 | 15.93 | 0.00 | 0.00 | 3.77 |
212 | 213 | 6.077838 | CGCGAGGATTATAATTTTAGTTGGC | 58.922 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
213 | 214 | 6.293190 | CGCGAGGATTATAATTTTAGTTGGCA | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
214 | 215 | 7.422399 | GCGAGGATTATAATTTTAGTTGGCAA | 58.578 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
215 | 216 | 7.591426 | GCGAGGATTATAATTTTAGTTGGCAAG | 59.409 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
216 | 217 | 7.591426 | CGAGGATTATAATTTTAGTTGGCAAGC | 59.409 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
217 | 218 | 8.305046 | AGGATTATAATTTTAGTTGGCAAGCA | 57.695 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
218 | 219 | 8.927411 | AGGATTATAATTTTAGTTGGCAAGCAT | 58.073 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
219 | 220 | 8.981647 | GGATTATAATTTTAGTTGGCAAGCATG | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
220 | 221 | 9.748708 | GATTATAATTTTAGTTGGCAAGCATGA | 57.251 | 29.630 | 0.00 | 0.00 | 0.00 | 3.07 |
226 | 227 | 9.452287 | AATTTTAGTTGGCAAGCATGATAATTT | 57.548 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
227 | 228 | 8.845413 | TTTTAGTTGGCAAGCATGATAATTTT | 57.155 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
228 | 229 | 7.830940 | TTAGTTGGCAAGCATGATAATTTTG | 57.169 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
229 | 230 | 5.797051 | AGTTGGCAAGCATGATAATTTTGT | 58.203 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
230 | 231 | 5.640357 | AGTTGGCAAGCATGATAATTTTGTG | 59.360 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
231 | 232 | 3.933955 | TGGCAAGCATGATAATTTTGTGC | 59.066 | 39.130 | 0.00 | 0.00 | 36.11 | 4.57 |
237 | 238 | 6.276832 | AGCATGATAATTTTGTGCTTCAGT | 57.723 | 33.333 | 0.00 | 0.00 | 43.03 | 3.41 |
238 | 239 | 6.694447 | AGCATGATAATTTTGTGCTTCAGTT | 58.306 | 32.000 | 0.00 | 0.00 | 43.03 | 3.16 |
239 | 240 | 7.156673 | AGCATGATAATTTTGTGCTTCAGTTT | 58.843 | 30.769 | 0.00 | 0.00 | 43.03 | 2.66 |
240 | 241 | 7.117236 | AGCATGATAATTTTGTGCTTCAGTTTG | 59.883 | 33.333 | 0.00 | 0.00 | 43.03 | 2.93 |
241 | 242 | 7.095523 | GCATGATAATTTTGTGCTTCAGTTTGT | 60.096 | 33.333 | 0.00 | 0.00 | 33.25 | 2.83 |
242 | 243 | 8.767085 | CATGATAATTTTGTGCTTCAGTTTGTT | 58.233 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
243 | 244 | 8.715191 | TGATAATTTTGTGCTTCAGTTTGTTT | 57.285 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
244 | 245 | 8.816144 | TGATAATTTTGTGCTTCAGTTTGTTTC | 58.184 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
245 | 246 | 8.947055 | ATAATTTTGTGCTTCAGTTTGTTTCT | 57.053 | 26.923 | 0.00 | 0.00 | 0.00 | 2.52 |
246 | 247 | 7.671495 | AATTTTGTGCTTCAGTTTGTTTCTT | 57.329 | 28.000 | 0.00 | 0.00 | 0.00 | 2.52 |
247 | 248 | 6.464895 | TTTTGTGCTTCAGTTTGTTTCTTG | 57.535 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
248 | 249 | 5.384063 | TTGTGCTTCAGTTTGTTTCTTGA | 57.616 | 34.783 | 0.00 | 0.00 | 0.00 | 3.02 |
249 | 250 | 5.581126 | TGTGCTTCAGTTTGTTTCTTGAT | 57.419 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
250 | 251 | 6.691754 | TGTGCTTCAGTTTGTTTCTTGATA | 57.308 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
251 | 252 | 6.728200 | TGTGCTTCAGTTTGTTTCTTGATAG | 58.272 | 36.000 | 0.00 | 0.00 | 0.00 | 2.08 |
252 | 253 | 6.542005 | TGTGCTTCAGTTTGTTTCTTGATAGA | 59.458 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
253 | 254 | 7.066887 | TGTGCTTCAGTTTGTTTCTTGATAGAA | 59.933 | 33.333 | 0.00 | 0.00 | 38.61 | 2.10 |
254 | 255 | 7.915397 | GTGCTTCAGTTTGTTTCTTGATAGAAA | 59.085 | 33.333 | 0.00 | 0.00 | 45.68 | 2.52 |
263 | 264 | 3.673746 | TCTTGATAGAAAATTGCCGCG | 57.326 | 42.857 | 0.00 | 0.00 | 0.00 | 6.46 |
264 | 265 | 3.006940 | TCTTGATAGAAAATTGCCGCGT | 58.993 | 40.909 | 4.92 | 0.00 | 0.00 | 6.01 |
265 | 266 | 2.823196 | TGATAGAAAATTGCCGCGTG | 57.177 | 45.000 | 4.92 | 0.00 | 0.00 | 5.34 |
266 | 267 | 2.080693 | TGATAGAAAATTGCCGCGTGT | 58.919 | 42.857 | 4.92 | 0.00 | 0.00 | 4.49 |
267 | 268 | 2.095213 | TGATAGAAAATTGCCGCGTGTC | 59.905 | 45.455 | 4.92 | 0.00 | 0.00 | 3.67 |
268 | 269 | 0.800012 | TAGAAAATTGCCGCGTGTCC | 59.200 | 50.000 | 4.92 | 0.00 | 0.00 | 4.02 |
269 | 270 | 1.169661 | AGAAAATTGCCGCGTGTCCA | 61.170 | 50.000 | 4.92 | 0.00 | 0.00 | 4.02 |
270 | 271 | 1.001745 | GAAAATTGCCGCGTGTCCAC | 61.002 | 55.000 | 4.92 | 0.00 | 0.00 | 4.02 |
271 | 272 | 1.452145 | AAAATTGCCGCGTGTCCACT | 61.452 | 50.000 | 4.92 | 0.00 | 0.00 | 4.00 |
272 | 273 | 0.604243 | AAATTGCCGCGTGTCCACTA | 60.604 | 50.000 | 4.92 | 0.00 | 0.00 | 2.74 |
273 | 274 | 0.604243 | AATTGCCGCGTGTCCACTAA | 60.604 | 50.000 | 4.92 | 0.00 | 0.00 | 2.24 |
274 | 275 | 1.296056 | ATTGCCGCGTGTCCACTAAC | 61.296 | 55.000 | 4.92 | 0.00 | 0.00 | 2.34 |
275 | 276 | 2.048503 | GCCGCGTGTCCACTAACT | 60.049 | 61.111 | 4.92 | 0.00 | 0.00 | 2.24 |
276 | 277 | 1.666872 | GCCGCGTGTCCACTAACTT | 60.667 | 57.895 | 4.92 | 0.00 | 0.00 | 2.66 |
277 | 278 | 1.897398 | GCCGCGTGTCCACTAACTTG | 61.897 | 60.000 | 4.92 | 0.00 | 0.00 | 3.16 |
278 | 279 | 1.491563 | CGCGTGTCCACTAACTTGC | 59.508 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
287 | 288 | 2.375174 | TCCACTAACTTGCCATCCTTGT | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
295 | 296 | 2.472695 | TGCCATCCTTGTGTCACTAC | 57.527 | 50.000 | 4.27 | 0.00 | 0.00 | 2.73 |
300 | 301 | 4.379813 | GCCATCCTTGTGTCACTACAATTG | 60.380 | 45.833 | 3.24 | 3.24 | 39.60 | 2.32 |
311 | 312 | 4.851558 | GTCACTACAATTGCCATCGAAAAC | 59.148 | 41.667 | 5.05 | 0.00 | 0.00 | 2.43 |
324 | 325 | 3.701532 | TCGAAAACGTTCAATTTGCCT | 57.298 | 38.095 | 0.00 | 0.00 | 32.89 | 4.75 |
361 | 369 | 4.679662 | ACGTCAGGTACTTATCATTTCCG | 58.320 | 43.478 | 0.00 | 0.00 | 34.60 | 4.30 |
364 | 372 | 6.040166 | ACGTCAGGTACTTATCATTTCCGTAT | 59.960 | 38.462 | 0.00 | 0.00 | 34.60 | 3.06 |
409 | 417 | 7.761038 | AAAAAGGTTTCCGTAGATCTTCATT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
410 | 418 | 7.761038 | AAAAGGTTTCCGTAGATCTTCATTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
411 | 419 | 7.761038 | AAAGGTTTCCGTAGATCTTCATTTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
412 | 420 | 7.761038 | AAGGTTTCCGTAGATCTTCATTTTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
503 | 542 | 1.275573 | AGAAACCCAGCGAGAACCTAC | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
593 | 632 | 4.796231 | CCGTCAGGTTCCGAGCCG | 62.796 | 72.222 | 0.00 | 0.00 | 0.00 | 5.52 |
635 | 681 | 5.343307 | AAAAAGGAGAGATCAGAGAGAGC | 57.657 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
636 | 682 | 3.668141 | AAGGAGAGATCAGAGAGAGCA | 57.332 | 47.619 | 0.00 | 0.00 | 34.30 | 4.26 |
637 | 683 | 3.219176 | AGGAGAGATCAGAGAGAGCAG | 57.781 | 52.381 | 0.00 | 0.00 | 34.30 | 4.24 |
638 | 684 | 1.610522 | GGAGAGATCAGAGAGAGCAGC | 59.389 | 57.143 | 0.00 | 0.00 | 34.30 | 5.25 |
639 | 685 | 2.300433 | GAGAGATCAGAGAGAGCAGCA | 58.700 | 52.381 | 0.00 | 0.00 | 34.30 | 4.41 |
640 | 686 | 2.292569 | GAGAGATCAGAGAGAGCAGCAG | 59.707 | 54.545 | 0.00 | 0.00 | 34.30 | 4.24 |
641 | 687 | 2.026641 | GAGATCAGAGAGAGCAGCAGT | 58.973 | 52.381 | 0.00 | 0.00 | 34.30 | 4.40 |
642 | 688 | 2.428171 | GAGATCAGAGAGAGCAGCAGTT | 59.572 | 50.000 | 0.00 | 0.00 | 34.30 | 3.16 |
886 | 939 | 1.449778 | GCCACCGGTAAAGCTCCTC | 60.450 | 63.158 | 6.87 | 0.00 | 0.00 | 3.71 |
927 | 981 | 2.545322 | CGTTCCCTAGCGATTTCTACCC | 60.545 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
1026 | 1080 | 2.359975 | AACCCTAGCGCCAACTGC | 60.360 | 61.111 | 2.29 | 0.00 | 0.00 | 4.40 |
1146 | 1200 | 2.405522 | TAACCCCTTCTCCCACCCGT | 62.406 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1191 | 1249 | 2.104792 | TGGTAGCTCAGTTCTGCAGTTT | 59.895 | 45.455 | 14.67 | 0.00 | 0.00 | 2.66 |
1221 | 1279 | 1.078778 | TTTCCGCGCTGATGCCTAA | 60.079 | 52.632 | 5.56 | 0.00 | 35.36 | 2.69 |
1382 | 1440 | 6.206829 | GGCAGTAACCTAGTTTTGACTTTGAT | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1389 | 1447 | 7.931275 | ACCTAGTTTTGACTTTGATTGTCTTC | 58.069 | 34.615 | 0.00 | 0.00 | 35.63 | 2.87 |
1419 | 1477 | 0.812811 | GATCATTGAGCTCAGCGGCA | 60.813 | 55.000 | 17.43 | 1.38 | 34.17 | 5.69 |
1515 | 1573 | 2.814183 | GATCACCGCGGTTCGTCTGT | 62.814 | 60.000 | 32.11 | 9.33 | 36.19 | 3.41 |
1767 | 1975 | 3.884693 | AGAAAGCATCACATGTTGTCACA | 59.115 | 39.130 | 0.00 | 0.00 | 37.31 | 3.58 |
1783 | 1991 | 3.194062 | GTCACATTGTTTTGTGGGGTTG | 58.806 | 45.455 | 4.89 | 0.00 | 45.63 | 3.77 |
1784 | 1992 | 2.834549 | TCACATTGTTTTGTGGGGTTGT | 59.165 | 40.909 | 4.89 | 0.00 | 45.63 | 3.32 |
1785 | 1993 | 2.935201 | CACATTGTTTTGTGGGGTTGTG | 59.065 | 45.455 | 0.00 | 0.00 | 42.63 | 3.33 |
1786 | 1994 | 2.569404 | ACATTGTTTTGTGGGGTTGTGT | 59.431 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
1787 | 1995 | 3.769844 | ACATTGTTTTGTGGGGTTGTGTA | 59.230 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1871 | 2079 | 3.512033 | AAGATCGAGTAAGCTGTCACC | 57.488 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1993 | 2203 | 2.203800 | CATGAGCTTTCATGCGCAAT | 57.796 | 45.000 | 17.11 | 0.00 | 44.98 | 3.56 |
2176 | 2386 | 0.960364 | CACAGGTAGCCGGCACAATT | 60.960 | 55.000 | 31.54 | 10.27 | 0.00 | 2.32 |
2186 | 2396 | 3.129287 | AGCCGGCACAATTCTCAAAATAG | 59.871 | 43.478 | 31.54 | 0.00 | 0.00 | 1.73 |
2197 | 2407 | 7.613022 | ACAATTCTCAAAATAGATGGCTCTTCA | 59.387 | 33.333 | 0.00 | 0.00 | 32.66 | 3.02 |
2268 | 2478 | 0.603065 | AAAGCCGCACCTTCCAAATC | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2276 | 2486 | 1.542915 | CACCTTCCAAATCTGCACCAG | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2348 | 2558 | 6.073276 | CCATTCAGTCGAGACACAATGTAAAA | 60.073 | 38.462 | 17.97 | 0.00 | 33.91 | 1.52 |
2401 | 2611 | 0.319405 | GCTTGGCAACCATTTCAGCT | 59.681 | 50.000 | 0.00 | 0.00 | 32.67 | 4.24 |
2418 | 2628 | 6.543430 | TTCAGCTATGGCATTTTATGGTTT | 57.457 | 33.333 | 4.78 | 0.00 | 41.70 | 3.27 |
2716 | 2926 | 3.120854 | GCACAAGTAAGCGAAAGTCAGAG | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
2720 | 2930 | 3.903360 | AGTAAGCGAAAGTCAGAGTCAC | 58.097 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2851 | 3061 | 3.624410 | GTGCTCATGATGCAACACTATCA | 59.376 | 43.478 | 17.65 | 0.00 | 42.41 | 2.15 |
2928 | 3138 | 3.105283 | TCTTCTAGACTAAACCCAGGGC | 58.895 | 50.000 | 4.91 | 0.00 | 0.00 | 5.19 |
2965 | 3175 | 2.641305 | AGCATCTTGTGAGATCTTGCC | 58.359 | 47.619 | 9.19 | 0.00 | 40.67 | 4.52 |
3020 | 3230 | 7.721399 | AGTTTTAGTGTTCCAGAACTTGATGAT | 59.279 | 33.333 | 11.56 | 0.00 | 41.67 | 2.45 |
3054 | 3264 | 6.016192 | TGGAGAAGACATGGTAAGATATCGAC | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
3057 | 3267 | 7.374272 | AGAAGACATGGTAAGATATCGACATG | 58.626 | 38.462 | 20.36 | 20.36 | 40.94 | 3.21 |
3390 | 3600 | 2.948979 | TGATCAATCCGTTTACCCATGC | 59.051 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
3404 | 3614 | 7.533900 | CGTTTACCCATGCAGATTTATTAATCG | 59.466 | 37.037 | 0.00 | 0.00 | 43.99 | 3.34 |
3514 | 3724 | 3.004629 | GGCACATCAAATTGACAGTCACA | 59.995 | 43.478 | 1.52 | 0.00 | 0.00 | 3.58 |
3518 | 3728 | 6.035217 | CACATCAAATTGACAGTCACACAAA | 58.965 | 36.000 | 1.52 | 0.00 | 0.00 | 2.83 |
3539 | 3749 | 3.318313 | AGAATACGATCCCAATCCACCT | 58.682 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3623 | 3833 | 2.429971 | TCTTGGACATTTTGTTGCTGCA | 59.570 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
3625 | 3835 | 1.479730 | TGGACATTTTGTTGCTGCACA | 59.520 | 42.857 | 0.00 | 0.90 | 0.00 | 4.57 |
4115 | 4333 | 9.178758 | GGACACTAATTCCAAACTTGATTCTAT | 57.821 | 33.333 | 0.00 | 0.00 | 32.82 | 1.98 |
4380 | 4598 | 1.135915 | AGATGTCGTGATGGAGCAGAC | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4387 | 4605 | 2.783135 | GTGATGGAGCAGACCAAAGAA | 58.217 | 47.619 | 0.00 | 0.00 | 43.47 | 2.52 |
4758 | 4977 | 4.529109 | TTGTCGTGGACATGTCTGAATA | 57.471 | 40.909 | 24.50 | 10.39 | 42.40 | 1.75 |
4920 | 5288 | 7.545265 | TCTTTTATGTGTGCAAGCAAATAATCC | 59.455 | 33.333 | 0.00 | 0.00 | 31.03 | 3.01 |
4972 | 5343 | 8.776470 | CATAGAAATGTTCAAAATTTTGGCAGT | 58.224 | 29.630 | 26.45 | 21.21 | 38.66 | 4.40 |
5307 | 5679 | 6.479990 | TGAGTTCAGACAAATCTAATATGCGG | 59.520 | 38.462 | 0.00 | 0.00 | 32.25 | 5.69 |
5381 | 6702 | 5.525199 | TCATCAATGCAAATCATTCGGATG | 58.475 | 37.500 | 0.00 | 0.00 | 43.21 | 3.51 |
5384 | 6705 | 5.584442 | TCAATGCAAATCATTCGGATGAAG | 58.416 | 37.500 | 11.20 | 5.18 | 44.96 | 3.02 |
5385 | 6706 | 3.425577 | TGCAAATCATTCGGATGAAGC | 57.574 | 42.857 | 11.20 | 15.15 | 44.96 | 3.86 |
5386 | 6707 | 2.099592 | TGCAAATCATTCGGATGAAGCC | 59.900 | 45.455 | 11.20 | 0.52 | 44.96 | 4.35 |
5387 | 6708 | 2.544486 | GCAAATCATTCGGATGAAGCCC | 60.544 | 50.000 | 11.20 | 0.00 | 44.96 | 5.19 |
5388 | 6709 | 2.689471 | CAAATCATTCGGATGAAGCCCA | 59.311 | 45.455 | 11.20 | 0.00 | 44.96 | 5.36 |
5391 | 6712 | 2.115427 | TCATTCGGATGAAGCCCACTA | 58.885 | 47.619 | 3.16 | 0.00 | 39.29 | 2.74 |
5392 | 6713 | 2.705658 | TCATTCGGATGAAGCCCACTAT | 59.294 | 45.455 | 3.16 | 0.00 | 39.29 | 2.12 |
5394 | 6715 | 4.346709 | TCATTCGGATGAAGCCCACTATAA | 59.653 | 41.667 | 3.16 | 0.00 | 39.29 | 0.98 |
5395 | 6716 | 4.764050 | TTCGGATGAAGCCCACTATAAA | 57.236 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
5396 | 6717 | 4.974645 | TCGGATGAAGCCCACTATAAAT | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
5397 | 6718 | 6.428083 | TTCGGATGAAGCCCACTATAAATA | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
5398 | 6719 | 6.620877 | TCGGATGAAGCCCACTATAAATAT | 57.379 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
5399 | 6720 | 6.406370 | TCGGATGAAGCCCACTATAAATATG | 58.594 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
5400 | 6721 | 6.013725 | TCGGATGAAGCCCACTATAAATATGT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
5401 | 6722 | 6.313905 | CGGATGAAGCCCACTATAAATATGTC | 59.686 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
5402 | 6723 | 7.398024 | GGATGAAGCCCACTATAAATATGTCT | 58.602 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5403 | 6724 | 7.550906 | GGATGAAGCCCACTATAAATATGTCTC | 59.449 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
5404 | 6725 | 7.373617 | TGAAGCCCACTATAAATATGTCTCA | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5405 | 6726 | 7.445121 | TGAAGCCCACTATAAATATGTCTCAG | 58.555 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
5527 | 6849 | 1.209504 | ACTGGGTGTTCATATGGGTCG | 59.790 | 52.381 | 2.13 | 0.00 | 0.00 | 4.79 |
5540 | 6862 | 4.833989 | GGTCGGCCCATTTCCCCC | 62.834 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
5541 | 6863 | 3.739613 | GTCGGCCCATTTCCCCCT | 61.740 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
5542 | 6864 | 2.944390 | TCGGCCCATTTCCCCCTT | 60.944 | 61.111 | 0.00 | 0.00 | 0.00 | 3.95 |
5543 | 6865 | 2.038813 | CGGCCCATTTCCCCCTTT | 59.961 | 61.111 | 0.00 | 0.00 | 0.00 | 3.11 |
5544 | 6866 | 1.612146 | CGGCCCATTTCCCCCTTTT | 60.612 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
5545 | 6867 | 1.198094 | CGGCCCATTTCCCCCTTTTT | 61.198 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5546 | 6868 | 0.618458 | GGCCCATTTCCCCCTTTTTC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5547 | 6869 | 0.618458 | GCCCATTTCCCCCTTTTTCC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
5548 | 6870 | 1.285280 | CCCATTTCCCCCTTTTTCCC | 58.715 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
5549 | 6871 | 1.203428 | CCCATTTCCCCCTTTTTCCCT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.017442 | TCCATGAACGACAAAACAACCA | 58.983 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
1 | 2 | 3.368495 | GTCCATGAACGACAAAACAACC | 58.632 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
2 | 3 | 3.181495 | TGGTCCATGAACGACAAAACAAC | 60.181 | 43.478 | 0.00 | 0.00 | 31.55 | 3.32 |
3 | 4 | 3.017442 | TGGTCCATGAACGACAAAACAA | 58.983 | 40.909 | 0.00 | 0.00 | 31.55 | 2.83 |
4 | 5 | 2.644676 | TGGTCCATGAACGACAAAACA | 58.355 | 42.857 | 0.00 | 0.00 | 31.55 | 2.83 |
5 | 6 | 3.252215 | TCATGGTCCATGAACGACAAAAC | 59.748 | 43.478 | 28.87 | 0.00 | 46.17 | 2.43 |
6 | 7 | 3.481453 | TCATGGTCCATGAACGACAAAA | 58.519 | 40.909 | 28.87 | 6.08 | 46.17 | 2.44 |
7 | 8 | 3.133141 | TCATGGTCCATGAACGACAAA | 57.867 | 42.857 | 28.87 | 6.79 | 46.17 | 2.83 |
8 | 9 | 2.849294 | TCATGGTCCATGAACGACAA | 57.151 | 45.000 | 28.87 | 7.51 | 46.17 | 3.18 |
15 | 16 | 4.161377 | TGAAGATTACGTCATGGTCCATGA | 59.839 | 41.667 | 27.61 | 27.61 | 46.84 | 3.07 |
16 | 17 | 4.441792 | TGAAGATTACGTCATGGTCCATG | 58.558 | 43.478 | 23.92 | 23.92 | 42.60 | 3.66 |
17 | 18 | 4.753516 | TGAAGATTACGTCATGGTCCAT | 57.246 | 40.909 | 0.00 | 0.00 | 30.40 | 3.41 |
18 | 19 | 4.753516 | ATGAAGATTACGTCATGGTCCA | 57.246 | 40.909 | 0.00 | 0.00 | 41.92 | 4.02 |
19 | 20 | 6.706270 | ACATAATGAAGATTACGTCATGGTCC | 59.294 | 38.462 | 0.00 | 0.00 | 42.47 | 4.46 |
20 | 21 | 7.715265 | ACATAATGAAGATTACGTCATGGTC | 57.285 | 36.000 | 0.00 | 0.00 | 42.47 | 4.02 |
21 | 22 | 8.397906 | CAAACATAATGAAGATTACGTCATGGT | 58.602 | 33.333 | 0.00 | 0.00 | 42.47 | 3.55 |
22 | 23 | 7.857389 | CCAAACATAATGAAGATTACGTCATGG | 59.143 | 37.037 | 0.00 | 0.00 | 42.47 | 3.66 |
23 | 24 | 7.857389 | CCCAAACATAATGAAGATTACGTCATG | 59.143 | 37.037 | 0.00 | 0.00 | 42.47 | 3.07 |
24 | 25 | 7.773224 | TCCCAAACATAATGAAGATTACGTCAT | 59.227 | 33.333 | 0.00 | 0.00 | 44.42 | 3.06 |
25 | 26 | 7.106890 | TCCCAAACATAATGAAGATTACGTCA | 58.893 | 34.615 | 0.00 | 0.00 | 38.66 | 4.35 |
26 | 27 | 7.254795 | CCTCCCAAACATAATGAAGATTACGTC | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 4.34 |
27 | 28 | 6.542370 | CCTCCCAAACATAATGAAGATTACGT | 59.458 | 38.462 | 0.00 | 0.00 | 0.00 | 3.57 |
28 | 29 | 6.513393 | GCCTCCCAAACATAATGAAGATTACG | 60.513 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
29 | 30 | 6.547510 | AGCCTCCCAAACATAATGAAGATTAC | 59.452 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
30 | 31 | 6.672593 | AGCCTCCCAAACATAATGAAGATTA | 58.327 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
31 | 32 | 5.522641 | AGCCTCCCAAACATAATGAAGATT | 58.477 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
32 | 33 | 5.134725 | AGCCTCCCAAACATAATGAAGAT | 57.865 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
33 | 34 | 4.591321 | AGCCTCCCAAACATAATGAAGA | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
34 | 35 | 5.047092 | ACAAAGCCTCCCAAACATAATGAAG | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
35 | 36 | 4.837860 | ACAAAGCCTCCCAAACATAATGAA | 59.162 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
36 | 37 | 4.415596 | ACAAAGCCTCCCAAACATAATGA | 58.584 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
37 | 38 | 4.806640 | ACAAAGCCTCCCAAACATAATG | 57.193 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
38 | 39 | 5.580022 | ACTACAAAGCCTCCCAAACATAAT | 58.420 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
39 | 40 | 4.993028 | ACTACAAAGCCTCCCAAACATAA | 58.007 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
40 | 41 | 4.650972 | ACTACAAAGCCTCCCAAACATA | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
41 | 42 | 3.525800 | ACTACAAAGCCTCCCAAACAT | 57.474 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
42 | 43 | 3.306472 | AACTACAAAGCCTCCCAAACA | 57.694 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
43 | 44 | 4.157840 | CCATAACTACAAAGCCTCCCAAAC | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 2.93 |
44 | 45 | 4.202631 | ACCATAACTACAAAGCCTCCCAAA | 60.203 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
45 | 46 | 3.332485 | ACCATAACTACAAAGCCTCCCAA | 59.668 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
46 | 47 | 2.916934 | ACCATAACTACAAAGCCTCCCA | 59.083 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
47 | 48 | 3.279434 | CACCATAACTACAAAGCCTCCC | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
48 | 49 | 2.683362 | GCACCATAACTACAAAGCCTCC | 59.317 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
49 | 50 | 3.127030 | GTGCACCATAACTACAAAGCCTC | 59.873 | 47.826 | 5.22 | 0.00 | 0.00 | 4.70 |
50 | 51 | 3.081804 | GTGCACCATAACTACAAAGCCT | 58.918 | 45.455 | 5.22 | 0.00 | 0.00 | 4.58 |
51 | 52 | 3.081804 | AGTGCACCATAACTACAAAGCC | 58.918 | 45.455 | 14.63 | 0.00 | 0.00 | 4.35 |
52 | 53 | 4.766404 | AAGTGCACCATAACTACAAAGC | 57.234 | 40.909 | 14.63 | 0.00 | 0.00 | 3.51 |
53 | 54 | 7.425606 | AGAAAAAGTGCACCATAACTACAAAG | 58.574 | 34.615 | 14.63 | 0.00 | 0.00 | 2.77 |
54 | 55 | 7.341445 | AGAAAAAGTGCACCATAACTACAAA | 57.659 | 32.000 | 14.63 | 0.00 | 0.00 | 2.83 |
55 | 56 | 6.952773 | AGAAAAAGTGCACCATAACTACAA | 57.047 | 33.333 | 14.63 | 0.00 | 0.00 | 2.41 |
56 | 57 | 6.952773 | AAGAAAAAGTGCACCATAACTACA | 57.047 | 33.333 | 14.63 | 0.00 | 0.00 | 2.74 |
57 | 58 | 9.738832 | TTTAAAGAAAAAGTGCACCATAACTAC | 57.261 | 29.630 | 14.63 | 0.00 | 0.00 | 2.73 |
59 | 60 | 9.660180 | TTTTTAAAGAAAAAGTGCACCATAACT | 57.340 | 25.926 | 14.63 | 5.43 | 39.16 | 2.24 |
62 | 63 | 9.050601 | CCATTTTTAAAGAAAAAGTGCACCATA | 57.949 | 29.630 | 14.63 | 0.00 | 45.33 | 2.74 |
63 | 64 | 7.555914 | ACCATTTTTAAAGAAAAAGTGCACCAT | 59.444 | 29.630 | 14.63 | 0.00 | 45.33 | 3.55 |
64 | 65 | 6.881602 | ACCATTTTTAAAGAAAAAGTGCACCA | 59.118 | 30.769 | 14.63 | 0.00 | 45.33 | 4.17 |
65 | 66 | 7.315247 | ACCATTTTTAAAGAAAAAGTGCACC | 57.685 | 32.000 | 14.63 | 0.00 | 45.33 | 5.01 |
66 | 67 | 9.862585 | CATACCATTTTTAAAGAAAAAGTGCAC | 57.137 | 29.630 | 9.40 | 9.40 | 45.33 | 4.57 |
67 | 68 | 9.823647 | TCATACCATTTTTAAAGAAAAAGTGCA | 57.176 | 25.926 | 2.47 | 0.00 | 45.33 | 4.57 |
106 | 107 | 9.566331 | TGGGTATTATCAGATTCCAAGATCTAT | 57.434 | 33.333 | 0.00 | 0.00 | 34.68 | 1.98 |
107 | 108 | 8.972662 | TGGGTATTATCAGATTCCAAGATCTA | 57.027 | 34.615 | 0.00 | 0.00 | 34.68 | 1.98 |
108 | 109 | 7.878621 | TGGGTATTATCAGATTCCAAGATCT | 57.121 | 36.000 | 0.00 | 0.00 | 36.84 | 2.75 |
109 | 110 | 8.787852 | GTTTGGGTATTATCAGATTCCAAGATC | 58.212 | 37.037 | 0.00 | 0.00 | 34.78 | 2.75 |
110 | 111 | 7.445402 | CGTTTGGGTATTATCAGATTCCAAGAT | 59.555 | 37.037 | 0.00 | 0.00 | 34.78 | 2.40 |
111 | 112 | 6.765989 | CGTTTGGGTATTATCAGATTCCAAGA | 59.234 | 38.462 | 0.00 | 0.00 | 34.78 | 3.02 |
112 | 113 | 6.542370 | ACGTTTGGGTATTATCAGATTCCAAG | 59.458 | 38.462 | 0.00 | 0.00 | 34.78 | 3.61 |
113 | 114 | 6.419791 | ACGTTTGGGTATTATCAGATTCCAA | 58.580 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
114 | 115 | 5.996644 | ACGTTTGGGTATTATCAGATTCCA | 58.003 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
115 | 116 | 6.053005 | TGACGTTTGGGTATTATCAGATTCC | 58.947 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
116 | 117 | 7.280205 | ACTTGACGTTTGGGTATTATCAGATTC | 59.720 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
117 | 118 | 7.065803 | CACTTGACGTTTGGGTATTATCAGATT | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
118 | 119 | 6.538742 | CACTTGACGTTTGGGTATTATCAGAT | 59.461 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
119 | 120 | 5.872617 | CACTTGACGTTTGGGTATTATCAGA | 59.127 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
120 | 121 | 5.447279 | GCACTTGACGTTTGGGTATTATCAG | 60.447 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
121 | 122 | 4.393680 | GCACTTGACGTTTGGGTATTATCA | 59.606 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
122 | 123 | 4.493545 | CGCACTTGACGTTTGGGTATTATC | 60.494 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
123 | 124 | 3.372822 | CGCACTTGACGTTTGGGTATTAT | 59.627 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
124 | 125 | 2.737783 | CGCACTTGACGTTTGGGTATTA | 59.262 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
125 | 126 | 1.533731 | CGCACTTGACGTTTGGGTATT | 59.466 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
126 | 127 | 1.153353 | CGCACTTGACGTTTGGGTAT | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
127 | 128 | 0.104487 | TCGCACTTGACGTTTGGGTA | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
128 | 129 | 0.534203 | ATCGCACTTGACGTTTGGGT | 60.534 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
129 | 130 | 0.165944 | GATCGCACTTGACGTTTGGG | 59.834 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
130 | 131 | 0.865111 | TGATCGCACTTGACGTTTGG | 59.135 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
131 | 132 | 1.260297 | TGTGATCGCACTTGACGTTTG | 59.740 | 47.619 | 4.45 | 0.00 | 45.36 | 2.93 |
132 | 133 | 1.577468 | TGTGATCGCACTTGACGTTT | 58.423 | 45.000 | 4.45 | 0.00 | 45.36 | 3.60 |
133 | 134 | 1.795768 | ATGTGATCGCACTTGACGTT | 58.204 | 45.000 | 11.96 | 0.00 | 45.36 | 3.99 |
134 | 135 | 3.514777 | ATGTGATCGCACTTGACGT | 57.485 | 47.368 | 11.96 | 0.00 | 45.36 | 4.34 |
138 | 139 | 0.522626 | TTGCCATGTGATCGCACTTG | 59.477 | 50.000 | 11.96 | 7.00 | 45.36 | 3.16 |
139 | 140 | 1.068333 | GTTTGCCATGTGATCGCACTT | 60.068 | 47.619 | 11.96 | 0.00 | 45.36 | 3.16 |
140 | 141 | 0.523072 | GTTTGCCATGTGATCGCACT | 59.477 | 50.000 | 11.96 | 0.00 | 45.36 | 4.40 |
141 | 142 | 0.456653 | GGTTTGCCATGTGATCGCAC | 60.457 | 55.000 | 11.96 | 0.00 | 38.97 | 5.34 |
142 | 143 | 1.882311 | GGTTTGCCATGTGATCGCA | 59.118 | 52.632 | 12.12 | 12.12 | 34.09 | 5.10 |
143 | 144 | 1.226379 | CGGTTTGCCATGTGATCGC | 60.226 | 57.895 | 0.00 | 0.00 | 34.09 | 4.58 |
144 | 145 | 0.801872 | TTCGGTTTGCCATGTGATCG | 59.198 | 50.000 | 0.00 | 0.00 | 34.09 | 3.69 |
145 | 146 | 1.539388 | TGTTCGGTTTGCCATGTGATC | 59.461 | 47.619 | 0.00 | 0.00 | 34.09 | 2.92 |
146 | 147 | 1.614996 | TGTTCGGTTTGCCATGTGAT | 58.385 | 45.000 | 0.00 | 0.00 | 34.09 | 3.06 |
147 | 148 | 1.614996 | ATGTTCGGTTTGCCATGTGA | 58.385 | 45.000 | 0.00 | 0.00 | 34.09 | 3.58 |
148 | 149 | 2.437200 | AATGTTCGGTTTGCCATGTG | 57.563 | 45.000 | 0.00 | 0.00 | 34.09 | 3.21 |
149 | 150 | 3.389221 | GAAAATGTTCGGTTTGCCATGT | 58.611 | 40.909 | 0.00 | 0.00 | 34.09 | 3.21 |
161 | 162 | 7.831750 | ACTAAATTTGTCGTCGAAAATGTTC | 57.168 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
162 | 163 | 9.161684 | GTAACTAAATTTGTCGTCGAAAATGTT | 57.838 | 29.630 | 0.00 | 9.28 | 0.00 | 2.71 |
163 | 164 | 7.528182 | CGTAACTAAATTTGTCGTCGAAAATGT | 59.472 | 33.333 | 0.00 | 5.09 | 0.00 | 2.71 |
164 | 165 | 7.457943 | GCGTAACTAAATTTGTCGTCGAAAATG | 60.458 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
165 | 166 | 6.517374 | GCGTAACTAAATTTGTCGTCGAAAAT | 59.483 | 34.615 | 0.00 | 4.47 | 0.00 | 1.82 |
166 | 167 | 5.840267 | GCGTAACTAAATTTGTCGTCGAAAA | 59.160 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
167 | 168 | 5.365133 | GCGTAACTAAATTTGTCGTCGAAA | 58.635 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
168 | 169 | 4.431471 | CGCGTAACTAAATTTGTCGTCGAA | 60.431 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
169 | 170 | 3.057999 | CGCGTAACTAAATTTGTCGTCGA | 59.942 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
170 | 171 | 3.057999 | TCGCGTAACTAAATTTGTCGTCG | 59.942 | 43.478 | 5.77 | 2.21 | 0.00 | 5.12 |
171 | 172 | 4.489841 | CCTCGCGTAACTAAATTTGTCGTC | 60.490 | 45.833 | 5.77 | 0.00 | 0.00 | 4.20 |
172 | 173 | 3.365820 | CCTCGCGTAACTAAATTTGTCGT | 59.634 | 43.478 | 5.77 | 0.00 | 0.00 | 4.34 |
173 | 174 | 3.609373 | TCCTCGCGTAACTAAATTTGTCG | 59.391 | 43.478 | 5.77 | 0.18 | 0.00 | 4.35 |
174 | 175 | 5.713822 | ATCCTCGCGTAACTAAATTTGTC | 57.286 | 39.130 | 5.77 | 0.00 | 0.00 | 3.18 |
175 | 176 | 7.781548 | ATAATCCTCGCGTAACTAAATTTGT | 57.218 | 32.000 | 5.77 | 0.00 | 0.00 | 2.83 |
183 | 184 | 9.538508 | AACTAAAATTATAATCCTCGCGTAACT | 57.461 | 29.630 | 5.77 | 0.00 | 0.00 | 2.24 |
184 | 185 | 9.577003 | CAACTAAAATTATAATCCTCGCGTAAC | 57.423 | 33.333 | 5.77 | 0.00 | 0.00 | 2.50 |
185 | 186 | 8.767085 | CCAACTAAAATTATAATCCTCGCGTAA | 58.233 | 33.333 | 5.77 | 0.00 | 0.00 | 3.18 |
186 | 187 | 7.095523 | GCCAACTAAAATTATAATCCTCGCGTA | 60.096 | 37.037 | 5.77 | 0.00 | 0.00 | 4.42 |
187 | 188 | 6.293244 | GCCAACTAAAATTATAATCCTCGCGT | 60.293 | 38.462 | 5.77 | 0.00 | 0.00 | 6.01 |
188 | 189 | 6.077838 | GCCAACTAAAATTATAATCCTCGCG | 58.922 | 40.000 | 0.00 | 0.00 | 0.00 | 5.87 |
189 | 190 | 6.966021 | TGCCAACTAAAATTATAATCCTCGC | 58.034 | 36.000 | 0.00 | 0.00 | 0.00 | 5.03 |
190 | 191 | 7.591426 | GCTTGCCAACTAAAATTATAATCCTCG | 59.409 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
191 | 192 | 8.413229 | TGCTTGCCAACTAAAATTATAATCCTC | 58.587 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
192 | 193 | 8.305046 | TGCTTGCCAACTAAAATTATAATCCT | 57.695 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
193 | 194 | 8.981647 | CATGCTTGCCAACTAAAATTATAATCC | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
194 | 195 | 9.748708 | TCATGCTTGCCAACTAAAATTATAATC | 57.251 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
200 | 201 | 9.452287 | AAATTATCATGCTTGCCAACTAAAATT | 57.548 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
201 | 202 | 9.452287 | AAAATTATCATGCTTGCCAACTAAAAT | 57.548 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
202 | 203 | 8.719648 | CAAAATTATCATGCTTGCCAACTAAAA | 58.280 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
203 | 204 | 7.877097 | ACAAAATTATCATGCTTGCCAACTAAA | 59.123 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
204 | 205 | 7.331440 | CACAAAATTATCATGCTTGCCAACTAA | 59.669 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
205 | 206 | 6.812656 | CACAAAATTATCATGCTTGCCAACTA | 59.187 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
206 | 207 | 5.640357 | CACAAAATTATCATGCTTGCCAACT | 59.360 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
207 | 208 | 5.671825 | GCACAAAATTATCATGCTTGCCAAC | 60.672 | 40.000 | 0.00 | 0.00 | 33.44 | 3.77 |
208 | 209 | 4.392445 | GCACAAAATTATCATGCTTGCCAA | 59.608 | 37.500 | 0.00 | 0.00 | 33.44 | 4.52 |
209 | 210 | 3.933955 | GCACAAAATTATCATGCTTGCCA | 59.066 | 39.130 | 0.00 | 0.00 | 33.44 | 4.92 |
210 | 211 | 4.186159 | AGCACAAAATTATCATGCTTGCC | 58.814 | 39.130 | 0.00 | 0.00 | 44.01 | 4.52 |
215 | 216 | 6.956299 | AACTGAAGCACAAAATTATCATGC | 57.044 | 33.333 | 0.00 | 0.00 | 36.52 | 4.06 |
216 | 217 | 8.301730 | ACAAACTGAAGCACAAAATTATCATG | 57.698 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
217 | 218 | 8.891671 | AACAAACTGAAGCACAAAATTATCAT | 57.108 | 26.923 | 0.00 | 0.00 | 0.00 | 2.45 |
218 | 219 | 8.715191 | AAACAAACTGAAGCACAAAATTATCA | 57.285 | 26.923 | 0.00 | 0.00 | 0.00 | 2.15 |
219 | 220 | 9.034544 | AGAAACAAACTGAAGCACAAAATTATC | 57.965 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
220 | 221 | 8.947055 | AGAAACAAACTGAAGCACAAAATTAT | 57.053 | 26.923 | 0.00 | 0.00 | 0.00 | 1.28 |
221 | 222 | 8.655092 | CAAGAAACAAACTGAAGCACAAAATTA | 58.345 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
222 | 223 | 7.387397 | TCAAGAAACAAACTGAAGCACAAAATT | 59.613 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
223 | 224 | 6.873076 | TCAAGAAACAAACTGAAGCACAAAAT | 59.127 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
224 | 225 | 6.219473 | TCAAGAAACAAACTGAAGCACAAAA | 58.781 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
225 | 226 | 5.777802 | TCAAGAAACAAACTGAAGCACAAA | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
226 | 227 | 5.384063 | TCAAGAAACAAACTGAAGCACAA | 57.616 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
227 | 228 | 5.581126 | ATCAAGAAACAAACTGAAGCACA | 57.419 | 34.783 | 0.00 | 0.00 | 0.00 | 4.57 |
228 | 229 | 6.959361 | TCTATCAAGAAACAAACTGAAGCAC | 58.041 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
229 | 230 | 7.566760 | TTCTATCAAGAAACAAACTGAAGCA | 57.433 | 32.000 | 0.00 | 0.00 | 38.81 | 3.91 |
242 | 243 | 3.438781 | ACGCGGCAATTTTCTATCAAGAA | 59.561 | 39.130 | 12.47 | 0.00 | 40.03 | 2.52 |
243 | 244 | 3.006940 | ACGCGGCAATTTTCTATCAAGA | 58.993 | 40.909 | 12.47 | 0.00 | 0.00 | 3.02 |
244 | 245 | 3.100817 | CACGCGGCAATTTTCTATCAAG | 58.899 | 45.455 | 12.47 | 0.00 | 0.00 | 3.02 |
245 | 246 | 2.486203 | ACACGCGGCAATTTTCTATCAA | 59.514 | 40.909 | 12.47 | 0.00 | 0.00 | 2.57 |
246 | 247 | 2.080693 | ACACGCGGCAATTTTCTATCA | 58.919 | 42.857 | 12.47 | 0.00 | 0.00 | 2.15 |
247 | 248 | 2.538939 | GGACACGCGGCAATTTTCTATC | 60.539 | 50.000 | 12.47 | 0.00 | 0.00 | 2.08 |
248 | 249 | 1.400494 | GGACACGCGGCAATTTTCTAT | 59.600 | 47.619 | 12.47 | 0.00 | 0.00 | 1.98 |
249 | 250 | 0.800012 | GGACACGCGGCAATTTTCTA | 59.200 | 50.000 | 12.47 | 0.00 | 0.00 | 2.10 |
250 | 251 | 1.169661 | TGGACACGCGGCAATTTTCT | 61.170 | 50.000 | 12.47 | 0.00 | 0.00 | 2.52 |
251 | 252 | 1.001745 | GTGGACACGCGGCAATTTTC | 61.002 | 55.000 | 12.47 | 0.00 | 0.00 | 2.29 |
252 | 253 | 1.007849 | GTGGACACGCGGCAATTTT | 60.008 | 52.632 | 12.47 | 0.00 | 0.00 | 1.82 |
253 | 254 | 0.604243 | TAGTGGACACGCGGCAATTT | 60.604 | 50.000 | 12.47 | 0.00 | 36.20 | 1.82 |
254 | 255 | 0.604243 | TTAGTGGACACGCGGCAATT | 60.604 | 50.000 | 12.47 | 0.00 | 36.20 | 2.32 |
255 | 256 | 1.004320 | TTAGTGGACACGCGGCAAT | 60.004 | 52.632 | 12.47 | 0.00 | 36.20 | 3.56 |
256 | 257 | 1.957186 | GTTAGTGGACACGCGGCAA | 60.957 | 57.895 | 12.47 | 0.00 | 36.20 | 4.52 |
257 | 258 | 2.356553 | GTTAGTGGACACGCGGCA | 60.357 | 61.111 | 12.47 | 0.00 | 36.20 | 5.69 |
258 | 259 | 1.666872 | AAGTTAGTGGACACGCGGC | 60.667 | 57.895 | 12.47 | 0.00 | 36.20 | 6.53 |
259 | 260 | 1.897398 | GCAAGTTAGTGGACACGCGG | 61.897 | 60.000 | 12.47 | 1.27 | 36.20 | 6.46 |
260 | 261 | 1.491563 | GCAAGTTAGTGGACACGCG | 59.508 | 57.895 | 3.53 | 3.53 | 36.20 | 6.01 |
261 | 262 | 0.882927 | TGGCAAGTTAGTGGACACGC | 60.883 | 55.000 | 0.00 | 0.00 | 36.20 | 5.34 |
262 | 263 | 1.732259 | GATGGCAAGTTAGTGGACACG | 59.268 | 52.381 | 0.00 | 0.00 | 36.20 | 4.49 |
263 | 264 | 2.084546 | GGATGGCAAGTTAGTGGACAC | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
264 | 265 | 1.985159 | AGGATGGCAAGTTAGTGGACA | 59.015 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
265 | 266 | 2.749621 | CAAGGATGGCAAGTTAGTGGAC | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
266 | 267 | 2.375174 | ACAAGGATGGCAAGTTAGTGGA | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
267 | 268 | 2.489329 | CACAAGGATGGCAAGTTAGTGG | 59.511 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
268 | 269 | 3.149196 | ACACAAGGATGGCAAGTTAGTG | 58.851 | 45.455 | 10.02 | 10.02 | 0.00 | 2.74 |
269 | 270 | 3.181445 | TGACACAAGGATGGCAAGTTAGT | 60.181 | 43.478 | 0.00 | 0.00 | 33.52 | 2.24 |
270 | 271 | 3.189287 | GTGACACAAGGATGGCAAGTTAG | 59.811 | 47.826 | 0.00 | 0.00 | 40.05 | 2.34 |
271 | 272 | 3.146066 | GTGACACAAGGATGGCAAGTTA | 58.854 | 45.455 | 0.00 | 0.00 | 40.05 | 2.24 |
272 | 273 | 1.956477 | GTGACACAAGGATGGCAAGTT | 59.044 | 47.619 | 0.00 | 0.00 | 40.05 | 2.66 |
273 | 274 | 1.143684 | AGTGACACAAGGATGGCAAGT | 59.856 | 47.619 | 8.59 | 0.00 | 40.05 | 3.16 |
274 | 275 | 1.901591 | AGTGACACAAGGATGGCAAG | 58.098 | 50.000 | 8.59 | 0.00 | 40.05 | 4.01 |
275 | 276 | 2.105649 | TGTAGTGACACAAGGATGGCAA | 59.894 | 45.455 | 8.59 | 0.00 | 40.05 | 4.52 |
276 | 277 | 1.696884 | TGTAGTGACACAAGGATGGCA | 59.303 | 47.619 | 8.59 | 0.00 | 34.28 | 4.92 |
277 | 278 | 2.472695 | TGTAGTGACACAAGGATGGC | 57.527 | 50.000 | 8.59 | 0.00 | 0.00 | 4.40 |
278 | 279 | 4.379813 | GCAATTGTAGTGACACAAGGATGG | 60.380 | 45.833 | 8.59 | 0.00 | 41.48 | 3.51 |
287 | 288 | 3.326836 | TCGATGGCAATTGTAGTGACA | 57.673 | 42.857 | 7.40 | 0.00 | 38.70 | 3.58 |
385 | 393 | 7.761038 | AATGAAGATCTACGGAAACCTTTTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
386 | 394 | 7.761038 | AAATGAAGATCTACGGAAACCTTTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
387 | 395 | 7.761038 | AAAATGAAGATCTACGGAAACCTTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 3.11 |
388 | 396 | 7.761038 | AAAAATGAAGATCTACGGAAACCTT | 57.239 | 32.000 | 0.00 | 0.00 | 0.00 | 3.50 |
466 | 474 | 5.541101 | GGGTTTCTTTTAGCCTTCCCTAAAA | 59.459 | 40.000 | 6.85 | 6.85 | 42.10 | 1.52 |
635 | 681 | 3.136123 | CGGGGGATGCAACTGCTG | 61.136 | 66.667 | 2.95 | 0.00 | 42.66 | 4.41 |
636 | 682 | 2.424842 | TTTCGGGGGATGCAACTGCT | 62.425 | 55.000 | 2.95 | 0.00 | 42.66 | 4.24 |
637 | 683 | 1.322538 | ATTTCGGGGGATGCAACTGC | 61.323 | 55.000 | 0.00 | 0.00 | 42.50 | 4.40 |
638 | 684 | 1.134946 | GAATTTCGGGGGATGCAACTG | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
639 | 685 | 1.474330 | GAATTTCGGGGGATGCAACT | 58.526 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
640 | 686 | 0.100503 | CGAATTTCGGGGGATGCAAC | 59.899 | 55.000 | 10.95 | 0.00 | 36.00 | 4.17 |
641 | 687 | 0.034960 | TCGAATTTCGGGGGATGCAA | 60.035 | 50.000 | 18.02 | 0.00 | 40.88 | 4.08 |
642 | 688 | 0.034960 | TTCGAATTTCGGGGGATGCA | 60.035 | 50.000 | 18.02 | 0.00 | 40.88 | 3.96 |
950 | 1004 | 2.666098 | GGTTAGGCGGGGAAGCTGA | 61.666 | 63.158 | 0.00 | 0.00 | 37.29 | 4.26 |
1146 | 1200 | 1.026182 | CCGAGCCTGCTGTTTATGCA | 61.026 | 55.000 | 0.00 | 0.00 | 38.81 | 3.96 |
1191 | 1249 | 4.144418 | CGGAAACCGGAACCAACA | 57.856 | 55.556 | 9.46 | 0.00 | 44.15 | 3.33 |
1221 | 1279 | 1.001641 | AGCAAGCAAGCGAGGGATT | 60.002 | 52.632 | 0.00 | 0.00 | 40.15 | 3.01 |
1382 | 1440 | 0.392706 | TCTTGCTGCGGAGAAGACAA | 59.607 | 50.000 | 8.65 | 0.94 | 0.00 | 3.18 |
1389 | 1447 | 1.598132 | CTCAATGATCTTGCTGCGGAG | 59.402 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
1419 | 1477 | 3.375299 | GCACGGAGCTTGTTAATCTCAAT | 59.625 | 43.478 | 0.00 | 0.00 | 41.15 | 2.57 |
1451 | 1509 | 1.423056 | GTTCTGCTGATGCGTGCTC | 59.577 | 57.895 | 0.00 | 0.00 | 43.34 | 4.26 |
1515 | 1573 | 7.735917 | TCTAAACAAGAACAGAGATGGAGAAA | 58.264 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1740 | 1948 | 5.526115 | ACAACATGTGATGCTTTCTTTCAG | 58.474 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1767 | 1975 | 4.027437 | ACTACACAACCCCACAAAACAAT | 58.973 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
1871 | 2079 | 7.069569 | TGAAAATCTCGTAAAGAAAAGAAGCG | 58.930 | 34.615 | 0.00 | 0.00 | 37.61 | 4.68 |
1993 | 2203 | 4.906618 | AGCCTTTACTTTAAGCACTGCTA | 58.093 | 39.130 | 3.33 | 0.00 | 38.25 | 3.49 |
2176 | 2386 | 6.656902 | ACATGAAGAGCCATCTATTTTGAGA | 58.343 | 36.000 | 0.00 | 0.00 | 33.45 | 3.27 |
2186 | 2396 | 8.789825 | ATTATAGATGAACATGAAGAGCCATC | 57.210 | 34.615 | 0.00 | 3.09 | 0.00 | 3.51 |
2268 | 2478 | 0.390866 | ATGAGCTTCGACTGGTGCAG | 60.391 | 55.000 | 0.00 | 0.00 | 37.52 | 4.41 |
2348 | 2558 | 7.732222 | ACATCTAAGAAGGAGAAGAATGAGT | 57.268 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2401 | 2611 | 9.171877 | GGAAAATCAAAACCATAAAATGCCATA | 57.828 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
2418 | 2628 | 8.528044 | AAGTTGTGTTAAGTAGGGAAAATCAA | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2716 | 2926 | 5.575995 | GGTCTCTTTTATACCTTCACGTGAC | 59.424 | 44.000 | 19.90 | 0.73 | 0.00 | 3.67 |
2720 | 2930 | 5.929992 | TGTTGGTCTCTTTTATACCTTCACG | 59.070 | 40.000 | 0.00 | 0.00 | 34.23 | 4.35 |
2851 | 3061 | 7.360113 | ACAAAAATTGGTCAACCTACAATCT | 57.640 | 32.000 | 0.10 | 0.00 | 34.00 | 2.40 |
2928 | 3138 | 1.093159 | GCTTCTGCCATCTCACAAGG | 58.907 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2965 | 3175 | 3.243873 | TGAAGGAACTGCAGTGTCTGTAG | 60.244 | 47.826 | 22.49 | 11.95 | 40.52 | 2.74 |
3051 | 3261 | 4.687948 | ACAAAGAACAGATGAGACATGTCG | 59.312 | 41.667 | 19.85 | 7.36 | 34.09 | 4.35 |
3054 | 3264 | 5.471116 | TGGAACAAAGAACAGATGAGACATG | 59.529 | 40.000 | 0.00 | 0.00 | 31.92 | 3.21 |
3390 | 3600 | 7.740346 | GCACCGTGATAACGATTAATAAATCTG | 59.260 | 37.037 | 3.47 | 0.00 | 39.56 | 2.90 |
3404 | 3614 | 1.156736 | ACAAGCAGCACCGTGATAAC | 58.843 | 50.000 | 1.65 | 0.00 | 0.00 | 1.89 |
3475 | 3685 | 0.106967 | GCCTCAGGGTCCTCAATTCC | 60.107 | 60.000 | 0.00 | 0.00 | 34.45 | 3.01 |
3514 | 3724 | 4.881850 | GTGGATTGGGATCGTATTCTTTGT | 59.118 | 41.667 | 0.00 | 0.00 | 32.84 | 2.83 |
3518 | 3728 | 3.071602 | CAGGTGGATTGGGATCGTATTCT | 59.928 | 47.826 | 0.00 | 0.00 | 32.84 | 2.40 |
3539 | 3749 | 2.225491 | GCATTACGTTGAGTTTCTGCCA | 59.775 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
3623 | 3833 | 2.717639 | AGAACCTCAAGTGCAAGTGT | 57.282 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3625 | 3835 | 6.096846 | ACAAATTAAGAACCTCAAGTGCAAGT | 59.903 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4115 | 4333 | 4.603989 | TGATACGGTGGTTCACTACAAA | 57.396 | 40.909 | 0.00 | 0.00 | 34.40 | 2.83 |
4380 | 4598 | 2.549754 | TCGCTTTGCTTCTCTTCTTTGG | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
4387 | 4605 | 0.952984 | GGCTGTCGCTTTGCTTCTCT | 60.953 | 55.000 | 0.00 | 0.00 | 36.09 | 3.10 |
4758 | 4977 | 1.069049 | GCTGTTGGAATTGGCACTGTT | 59.931 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
5285 | 5657 | 6.480320 | ACTCCGCATATTAGATTTGTCTGAAC | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
5307 | 5679 | 1.904537 | TCCCTCCGGTCCTTTTTACTC | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
5381 | 6702 | 7.671302 | TCTGAGACATATTTATAGTGGGCTTC | 58.329 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
5384 | 6705 | 8.754080 | AGTATCTGAGACATATTTATAGTGGGC | 58.246 | 37.037 | 5.12 | 0.00 | 0.00 | 5.36 |
5397 | 6718 | 9.507329 | AAATTAACAACACAGTATCTGAGACAT | 57.493 | 29.630 | 5.12 | 0.00 | 35.18 | 3.06 |
5398 | 6719 | 8.902540 | AAATTAACAACACAGTATCTGAGACA | 57.097 | 30.769 | 5.12 | 0.00 | 35.18 | 3.41 |
5527 | 6849 | 0.618458 | GAAAAAGGGGGAAATGGGCC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.