Multiple sequence alignment - TraesCS6A01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G363900 chr6A 100.000 5358 0 0 1 5358 592683678 592689035 0.000000e+00 9895.0
1 TraesCS6A01G363900 chr6A 83.133 249 15 16 4940 5175 592688573 592688807 9.100000e-48 202.0
2 TraesCS6A01G363900 chr6A 83.133 249 15 16 4896 5130 592688617 592688852 9.100000e-48 202.0
3 TraesCS6A01G363900 chr6B 89.120 2022 133 41 1588 3544 674101194 674103193 0.000000e+00 2435.0
4 TraesCS6A01G363900 chr6B 89.661 1238 54 25 3753 4936 674103515 674104732 0.000000e+00 1509.0
5 TraesCS6A01G363900 chr6B 85.325 954 69 32 4141 5052 674034010 674033086 0.000000e+00 920.0
6 TraesCS6A01G363900 chr6B 86.291 693 43 27 4361 5026 674107070 674107737 0.000000e+00 706.0
7 TraesCS6A01G363900 chr6B 79.031 1011 81 50 1 937 674099759 674100712 6.020000e-159 571.0
8 TraesCS6A01G363900 chr6B 85.553 533 37 13 1000 1526 674100716 674101214 6.150000e-144 521.0
9 TraesCS6A01G363900 chr6B 85.942 313 32 9 5038 5345 673952867 673952562 1.860000e-84 324.0
10 TraesCS6A01G363900 chr6B 81.723 383 38 22 4996 5346 674107614 674107996 1.890000e-74 291.0
11 TraesCS6A01G363900 chr6B 87.440 207 23 3 1 205 674046929 674047134 8.970000e-58 235.0
12 TraesCS6A01G363900 chr6B 92.208 154 9 1 3996 4149 674034638 674034488 1.170000e-51 215.0
13 TraesCS6A01G363900 chr6D 90.514 1655 87 32 3534 5150 446003412 446001790 0.000000e+00 2122.0
14 TraesCS6A01G363900 chr6D 85.153 1145 75 35 412 1517 446004498 446003410 0.000000e+00 1085.0
15 TraesCS6A01G363900 chr6D 81.982 333 46 6 1 331 446004898 446004578 2.460000e-68 270.0
16 TraesCS6A01G363900 chr6D 88.991 218 22 2 1 217 446043389 446043173 8.850000e-68 268.0
17 TraesCS6A01G363900 chr6D 80.994 342 36 22 4940 5271 446002034 446001712 1.490000e-60 244.0
18 TraesCS6A01G363900 chr6D 86.667 225 25 4 1 222 446042967 446042745 1.490000e-60 244.0
19 TraesCS6A01G363900 chr6D 88.095 126 12 1 5236 5358 446062619 446062744 4.320000e-31 147.0
20 TraesCS6A01G363900 chr6D 84.112 107 12 4 4887 4988 446001997 446001891 1.230000e-16 99.0
21 TraesCS6A01G363900 chr6D 86.517 89 9 3 4932 5018 446001878 446001791 1.590000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G363900 chr6A 592683678 592689035 5357 False 3433.00 9895 88.755333 1 5358 3 chr6A.!!$F1 5357
1 TraesCS6A01G363900 chr6B 674099759 674107996 8237 False 1005.50 2435 85.229833 1 5346 6 chr6B.!!$F2 5345
2 TraesCS6A01G363900 chr6B 674033086 674034638 1552 True 567.50 920 88.766500 3996 5052 2 chr6B.!!$R2 1056
3 TraesCS6A01G363900 chr6D 446001712 446004898 3186 True 652.55 2122 84.878667 1 5271 6 chr6D.!!$R1 5270
4 TraesCS6A01G363900 chr6D 446042745 446043389 644 True 256.00 268 87.829000 1 222 2 chr6D.!!$R2 221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 574 0.179153 GGCCAGCATTTTTCTCTCGC 60.179 55.0 0.0 0.0 0.00 5.03 F
1159 1322 0.038166 TCTTGCCCCTGTGTGGATTC 59.962 55.0 0.0 0.0 38.35 2.52 F
1893 2082 0.035152 TTGCTCTGCCATCCATTCGT 60.035 50.0 0.0 0.0 0.00 3.85 F
2972 3196 0.032813 CCAAGATGGTGGCTGGGATT 60.033 55.0 0.0 0.0 31.35 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 2081 0.104304 AATATCCTGTGACGGCGGAC 59.896 55.0 13.24 8.21 0.00 4.79 R
2250 2450 0.456628 GTGTCGTCCTAGGAGGCTTC 59.543 60.0 23.96 16.74 34.61 3.86 R
3278 3503 0.175760 CATCTTCCACGATGACCCGT 59.824 55.0 0.00 0.00 42.63 5.28 R
4573 5432 0.037232 GCACGCTACTGACTCCCTTT 60.037 55.0 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 3.920093 CTTGAAGCCCACGTCCCCC 62.920 68.421 0.00 0.00 0.00 5.40
127 131 0.458260 AACGTTGTTTGTTGGAGGGC 59.542 50.000 0.00 0.00 0.00 5.19
128 132 0.681564 ACGTTGTTTGTTGGAGGGCA 60.682 50.000 0.00 0.00 0.00 5.36
152 156 5.005740 TGTCGAGTAGCTACTTTTAGTCCA 58.994 41.667 26.71 13.61 36.50 4.02
198 202 2.954020 ATGCGACGATGTAGCGTGGG 62.954 60.000 0.00 0.00 45.72 4.61
212 216 0.935196 CGTGGGCGGCTTTTATACTC 59.065 55.000 9.56 0.00 0.00 2.59
214 218 2.640184 GTGGGCGGCTTTTATACTCTT 58.360 47.619 9.56 0.00 0.00 2.85
215 219 3.014623 GTGGGCGGCTTTTATACTCTTT 58.985 45.455 9.56 0.00 0.00 2.52
216 220 3.442625 GTGGGCGGCTTTTATACTCTTTT 59.557 43.478 9.56 0.00 0.00 2.27
217 221 3.442273 TGGGCGGCTTTTATACTCTTTTG 59.558 43.478 9.56 0.00 0.00 2.44
267 271 7.063426 ACAGTATTATGTATGACACGCATATGC 59.937 37.037 18.08 18.08 41.29 3.14
280 284 8.567104 TGACACGCATATGCAAATATATCTTTT 58.433 29.630 26.52 0.00 42.21 2.27
332 336 9.425577 GTGAGAAGTAAGCAAGTTTAATCTAGT 57.574 33.333 0.00 0.00 0.00 2.57
367 390 5.632034 AGAAACCCATGGATAGTTCTACC 57.368 43.478 15.22 0.51 0.00 3.18
378 441 2.556144 AGTTCTACCCACGAAAACCC 57.444 50.000 0.00 0.00 0.00 4.11
380 443 2.148768 GTTCTACCCACGAAAACCCTG 58.851 52.381 0.00 0.00 0.00 4.45
388 451 0.669625 ACGAAAACCCTGCGCTCTAC 60.670 55.000 9.73 0.00 0.00 2.59
389 452 0.669318 CGAAAACCCTGCGCTCTACA 60.669 55.000 9.73 0.00 0.00 2.74
390 453 1.739067 GAAAACCCTGCGCTCTACAT 58.261 50.000 9.73 0.00 0.00 2.29
391 454 2.737359 CGAAAACCCTGCGCTCTACATA 60.737 50.000 9.73 0.00 0.00 2.29
392 455 3.467803 GAAAACCCTGCGCTCTACATAT 58.532 45.455 9.73 0.00 0.00 1.78
393 456 3.560636 AAACCCTGCGCTCTACATATT 57.439 42.857 9.73 0.00 0.00 1.28
394 457 2.533266 ACCCTGCGCTCTACATATTG 57.467 50.000 9.73 0.00 0.00 1.90
395 458 1.070758 ACCCTGCGCTCTACATATTGG 59.929 52.381 9.73 0.00 0.00 3.16
396 459 1.344438 CCCTGCGCTCTACATATTGGA 59.656 52.381 9.73 0.00 0.00 3.53
397 460 2.027745 CCCTGCGCTCTACATATTGGAT 60.028 50.000 9.73 0.00 0.00 3.41
398 461 2.998670 CCTGCGCTCTACATATTGGATG 59.001 50.000 9.73 0.00 0.00 3.51
399 462 3.555795 CCTGCGCTCTACATATTGGATGT 60.556 47.826 9.73 0.00 36.13 3.06
400 463 4.321974 CCTGCGCTCTACATATTGGATGTA 60.322 45.833 9.73 0.00 33.76 2.29
401 464 5.208463 TGCGCTCTACATATTGGATGTAA 57.792 39.130 9.73 0.00 34.50 2.41
402 465 5.793817 TGCGCTCTACATATTGGATGTAAT 58.206 37.500 9.73 0.00 34.50 1.89
403 466 6.930731 TGCGCTCTACATATTGGATGTAATA 58.069 36.000 9.73 0.00 34.50 0.98
404 467 7.382898 TGCGCTCTACATATTGGATGTAATAA 58.617 34.615 9.73 0.00 34.50 1.40
405 468 7.545615 TGCGCTCTACATATTGGATGTAATAAG 59.454 37.037 9.73 0.12 34.50 1.73
406 469 7.759886 GCGCTCTACATATTGGATGTAATAAGA 59.240 37.037 0.00 0.00 34.50 2.10
407 470 9.809096 CGCTCTACATATTGGATGTAATAAGAT 57.191 33.333 0.00 0.00 34.50 2.40
442 508 6.045072 TCTCGAGGTAAAAATAAAGGAGCA 57.955 37.500 13.56 0.00 0.00 4.26
443 509 6.650120 TCTCGAGGTAAAAATAAAGGAGCAT 58.350 36.000 13.56 0.00 0.00 3.79
477 549 2.880443 TCTTCCTCTTTTGGCAGCATT 58.120 42.857 0.00 0.00 0.00 3.56
478 550 2.559668 TCTTCCTCTTTTGGCAGCATTG 59.440 45.455 0.00 0.00 0.00 2.82
496 568 3.860717 GCGTGGCCAGCATTTTTC 58.139 55.556 5.11 0.00 34.19 2.29
497 569 1.290009 GCGTGGCCAGCATTTTTCT 59.710 52.632 5.11 0.00 34.19 2.52
498 570 0.733909 GCGTGGCCAGCATTTTTCTC 60.734 55.000 5.11 0.00 34.19 2.87
499 571 0.883833 CGTGGCCAGCATTTTTCTCT 59.116 50.000 5.11 0.00 0.00 3.10
500 572 1.135575 CGTGGCCAGCATTTTTCTCTC 60.136 52.381 5.11 0.00 0.00 3.20
501 573 1.135575 GTGGCCAGCATTTTTCTCTCG 60.136 52.381 5.11 0.00 0.00 4.04
502 574 0.179153 GGCCAGCATTTTTCTCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
503 575 0.523072 GCCAGCATTTTTCTCTCGCA 59.477 50.000 0.00 0.00 0.00 5.10
504 576 1.068333 GCCAGCATTTTTCTCTCGCAA 60.068 47.619 0.00 0.00 0.00 4.85
505 577 2.607771 GCCAGCATTTTTCTCTCGCAAA 60.608 45.455 0.00 0.00 0.00 3.68
506 578 3.641648 CCAGCATTTTTCTCTCGCAAAA 58.358 40.909 0.00 0.00 0.00 2.44
507 579 3.671928 CCAGCATTTTTCTCTCGCAAAAG 59.328 43.478 0.00 0.00 0.00 2.27
508 580 4.539870 CAGCATTTTTCTCTCGCAAAAGA 58.460 39.130 0.00 0.00 0.00 2.52
514 586 1.573108 TCTCTCGCAAAAGATCCCCT 58.427 50.000 0.00 0.00 0.00 4.79
518 590 1.819632 CGCAAAAGATCCCCTCCGG 60.820 63.158 0.00 0.00 0.00 5.14
537 609 1.305201 GGTGAAAAACGAGCTCCACA 58.695 50.000 16.89 3.79 0.00 4.17
547 619 3.567397 ACGAGCTCCACAGGATAATAGT 58.433 45.455 8.47 0.00 0.00 2.12
550 622 5.775701 ACGAGCTCCACAGGATAATAGTAAT 59.224 40.000 8.47 0.00 0.00 1.89
552 624 7.450634 ACGAGCTCCACAGGATAATAGTAATAA 59.549 37.037 8.47 0.00 0.00 1.40
553 625 8.470805 CGAGCTCCACAGGATAATAGTAATAAT 58.529 37.037 8.47 0.00 0.00 1.28
580 664 4.861102 ACCATCTGCCAAGAAAAGAAAG 57.139 40.909 0.00 0.00 35.59 2.62
770 871 1.550327 GCCTTCCCTTCCTTTTCCTG 58.450 55.000 0.00 0.00 0.00 3.86
931 1061 2.802106 GCTCCTCCTCCTTCGTCG 59.198 66.667 0.00 0.00 0.00 5.12
937 1067 1.004080 TCCTCCTTCGTCGTCGTCT 60.004 57.895 1.33 0.00 38.33 4.18
938 1068 0.604780 TCCTCCTTCGTCGTCGTCTT 60.605 55.000 1.33 0.00 38.33 3.01
940 1070 0.454620 CTCCTTCGTCGTCGTCTTGG 60.455 60.000 1.33 1.29 38.33 3.61
941 1071 2.087009 CCTTCGTCGTCGTCTTGGC 61.087 63.158 1.33 0.00 38.33 4.52
951 1081 2.817396 GTCTTGGCGAGGCAGAGC 60.817 66.667 0.26 0.00 0.00 4.09
960 1114 1.744741 GAGGCAGAGCAACAGAGGC 60.745 63.158 0.00 0.00 0.00 4.70
966 1120 3.672295 GAGCAACAGAGGCCGGGAG 62.672 68.421 2.18 0.00 0.00 4.30
979 1133 3.723554 CGGGAGGAAGAAGAAGTCG 57.276 57.895 0.00 0.00 0.00 4.18
980 1134 0.889306 CGGGAGGAAGAAGAAGTCGT 59.111 55.000 0.00 0.00 0.00 4.34
1118 1272 3.191371 GCCCATTCGATTTGACTCTGTTT 59.809 43.478 0.00 0.00 0.00 2.83
1119 1273 4.321230 GCCCATTCGATTTGACTCTGTTTT 60.321 41.667 0.00 0.00 0.00 2.43
1120 1274 5.393962 CCCATTCGATTTGACTCTGTTTTC 58.606 41.667 0.00 0.00 0.00 2.29
1121 1275 5.182001 CCCATTCGATTTGACTCTGTTTTCT 59.818 40.000 0.00 0.00 0.00 2.52
1122 1276 6.294176 CCCATTCGATTTGACTCTGTTTTCTT 60.294 38.462 0.00 0.00 0.00 2.52
1123 1277 7.141363 CCATTCGATTTGACTCTGTTTTCTTT 58.859 34.615 0.00 0.00 0.00 2.52
1124 1278 7.324616 CCATTCGATTTGACTCTGTTTTCTTTC 59.675 37.037 0.00 0.00 0.00 2.62
1125 1279 6.300354 TCGATTTGACTCTGTTTTCTTTCC 57.700 37.500 0.00 0.00 0.00 3.13
1126 1280 6.055588 TCGATTTGACTCTGTTTTCTTTCCT 58.944 36.000 0.00 0.00 0.00 3.36
1133 1287 7.538575 TGACTCTGTTTTCTTTCCTTTTCTTG 58.461 34.615 0.00 0.00 0.00 3.02
1145 1308 2.982470 CCTTTTCTTGCGATGTTCTTGC 59.018 45.455 0.00 0.00 34.52 4.01
1146 1309 2.704725 TTTCTTGCGATGTTCTTGCC 57.295 45.000 0.00 0.00 32.74 4.52
1159 1322 0.038166 TCTTGCCCCTGTGTGGATTC 59.962 55.000 0.00 0.00 38.35 2.52
1182 1345 1.128692 CTCGCTGAATTCGGTGGTTTC 59.871 52.381 24.09 3.07 33.72 2.78
1207 1370 3.567797 GCCGCGAGAACATGAGGC 61.568 66.667 8.23 0.00 37.61 4.70
1240 1403 4.141801 TGTCTTTCTTTCTCCTTTCGTCCA 60.142 41.667 0.00 0.00 0.00 4.02
1261 1424 2.475818 TGATTCGTGCGTGTTAGTTGT 58.524 42.857 0.00 0.00 0.00 3.32
1266 1429 1.656429 CGTGCGTGTTAGTTGTTGCTC 60.656 52.381 0.00 0.00 0.00 4.26
1312 1475 5.393027 CGAGGAGGAGAAGAAGAAGAAGAAG 60.393 48.000 0.00 0.00 0.00 2.85
1317 1480 7.717436 GGAGGAGAAGAAGAAGAAGAAGAAAAA 59.283 37.037 0.00 0.00 0.00 1.94
1419 1586 4.335416 TGAAAAATCCAGAGCCAAGTAGG 58.665 43.478 0.00 0.00 41.84 3.18
1427 1594 2.100584 CAGAGCCAAGTAGGAGTAGCAG 59.899 54.545 0.00 0.00 41.22 4.24
1431 1598 2.100087 GCCAAGTAGGAGTAGCAGAGAC 59.900 54.545 0.00 0.00 41.22 3.36
1474 1641 5.927281 ATTGCAGCTGGAATTAATGAACT 57.073 34.783 25.93 3.36 31.89 3.01
1498 1665 9.213777 ACTACTCCCATTATCTCATCTTTTACA 57.786 33.333 0.00 0.00 0.00 2.41
1500 1667 8.970859 ACTCCCATTATCTCATCTTTTACAAG 57.029 34.615 0.00 0.00 0.00 3.16
1501 1668 8.772250 ACTCCCATTATCTCATCTTTTACAAGA 58.228 33.333 0.00 0.00 43.45 3.02
1502 1669 9.618890 CTCCCATTATCTCATCTTTTACAAGAA 57.381 33.333 0.00 0.00 42.53 2.52
1503 1670 9.396022 TCCCATTATCTCATCTTTTACAAGAAC 57.604 33.333 0.00 0.00 42.53 3.01
1504 1671 9.177608 CCCATTATCTCATCTTTTACAAGAACA 57.822 33.333 0.00 0.00 42.53 3.18
1663 1831 1.531149 CCTTGTGCGTAAGGTGTGAAG 59.469 52.381 9.92 0.00 41.85 3.02
1665 1833 2.605837 TGTGCGTAAGGTGTGAAGAA 57.394 45.000 0.00 0.00 38.28 2.52
1666 1834 3.120321 TGTGCGTAAGGTGTGAAGAAT 57.880 42.857 0.00 0.00 38.28 2.40
1667 1835 3.472652 TGTGCGTAAGGTGTGAAGAATT 58.527 40.909 0.00 0.00 38.28 2.17
1669 1837 3.250040 GTGCGTAAGGTGTGAAGAATTGT 59.750 43.478 0.00 0.00 38.28 2.71
1683 1863 2.428960 AATTGTTTGTTCGGCGGCCC 62.429 55.000 14.55 0.00 0.00 5.80
1787 1976 0.395311 CATGCCCCATGTCTGCTTCT 60.395 55.000 0.00 0.00 37.12 2.85
1808 1997 2.746269 GCATGTGCATTGTTGTTCACT 58.254 42.857 0.00 0.00 41.59 3.41
1809 1998 3.125316 GCATGTGCATTGTTGTTCACTT 58.875 40.909 0.00 0.00 41.59 3.16
1810 1999 3.060138 GCATGTGCATTGTTGTTCACTTG 60.060 43.478 0.00 0.00 41.59 3.16
1811 2000 3.865011 TGTGCATTGTTGTTCACTTGT 57.135 38.095 0.00 0.00 0.00 3.16
1812 2001 4.185467 TGTGCATTGTTGTTCACTTGTT 57.815 36.364 0.00 0.00 0.00 2.83
1813 2002 4.172505 TGTGCATTGTTGTTCACTTGTTC 58.827 39.130 0.00 0.00 0.00 3.18
1836 2025 1.078848 GCGGTGCTTCTGATCCTGT 60.079 57.895 0.00 0.00 0.00 4.00
1840 2029 2.559440 GGTGCTTCTGATCCTGTGATC 58.441 52.381 0.00 0.00 46.37 2.92
1854 2043 3.125829 CCTGTGATCAAAATCCTCGTGTG 59.874 47.826 0.00 0.00 0.00 3.82
1881 2070 0.583438 CAGTTGACGTGGTTGCTCTG 59.417 55.000 0.00 0.00 0.00 3.35
1882 2071 1.160329 AGTTGACGTGGTTGCTCTGC 61.160 55.000 0.00 0.00 0.00 4.26
1883 2072 1.891919 TTGACGTGGTTGCTCTGCC 60.892 57.895 0.00 0.00 0.00 4.85
1884 2073 2.280797 GACGTGGTTGCTCTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
1887 2076 2.401766 CGTGGTTGCTCTGCCATCC 61.402 63.158 0.00 0.00 37.09 3.51
1888 2077 1.303561 GTGGTTGCTCTGCCATCCA 60.304 57.895 0.00 0.00 37.09 3.41
1890 2079 0.040058 TGGTTGCTCTGCCATCCATT 59.960 50.000 0.00 0.00 31.42 3.16
1891 2080 0.743097 GGTTGCTCTGCCATCCATTC 59.257 55.000 0.00 0.00 0.00 2.67
1892 2081 0.379669 GTTGCTCTGCCATCCATTCG 59.620 55.000 0.00 0.00 0.00 3.34
1893 2082 0.035152 TTGCTCTGCCATCCATTCGT 60.035 50.000 0.00 0.00 0.00 3.85
1894 2083 0.462581 TGCTCTGCCATCCATTCGTC 60.463 55.000 0.00 0.00 0.00 4.20
1895 2084 1.162800 GCTCTGCCATCCATTCGTCC 61.163 60.000 0.00 0.00 0.00 4.79
1896 2085 0.877649 CTCTGCCATCCATTCGTCCG 60.878 60.000 0.00 0.00 0.00 4.79
1897 2086 2.513666 TGCCATCCATTCGTCCGC 60.514 61.111 0.00 0.00 0.00 5.54
1898 2087 3.279875 GCCATCCATTCGTCCGCC 61.280 66.667 0.00 0.00 0.00 6.13
1899 2088 2.967076 CCATCCATTCGTCCGCCG 60.967 66.667 0.00 0.00 38.13 6.46
1900 2089 2.202878 CATCCATTCGTCCGCCGT 60.203 61.111 0.00 0.00 37.94 5.68
1901 2090 2.106332 ATCCATTCGTCCGCCGTC 59.894 61.111 0.00 0.00 37.94 4.79
1902 2091 2.717044 ATCCATTCGTCCGCCGTCA 61.717 57.895 0.00 0.00 37.94 4.35
1903 2092 2.901051 ATCCATTCGTCCGCCGTCAC 62.901 60.000 0.00 0.00 37.94 3.67
1904 2093 2.431771 CATTCGTCCGCCGTCACA 60.432 61.111 0.00 0.00 37.94 3.58
1905 2094 2.126071 ATTCGTCCGCCGTCACAG 60.126 61.111 0.00 0.00 37.94 3.66
1911 2100 0.104304 GTCCGCCGTCACAGGATATT 59.896 55.000 0.00 0.00 36.34 1.28
1913 2102 0.937304 CCGCCGTCACAGGATATTTG 59.063 55.000 0.00 0.00 0.00 2.32
1915 2104 1.378531 GCCGTCACAGGATATTTGCA 58.621 50.000 0.00 0.00 0.00 4.08
1916 2105 1.064060 GCCGTCACAGGATATTTGCAC 59.936 52.381 0.00 0.00 0.00 4.57
1917 2106 2.355197 CCGTCACAGGATATTTGCACA 58.645 47.619 0.00 0.00 0.00 4.57
1918 2107 2.352651 CCGTCACAGGATATTTGCACAG 59.647 50.000 0.00 0.00 0.00 3.66
1919 2108 3.261580 CGTCACAGGATATTTGCACAGA 58.738 45.455 0.00 0.00 0.00 3.41
1964 2159 5.585047 AGTTAGGACAAACTGAACTGTTCAC 59.415 40.000 18.69 8.35 38.28 3.18
2004 2199 3.991367 AGTTCACACTTGGTAGTAGTGC 58.009 45.455 0.00 0.00 45.38 4.40
2008 2203 3.067106 CACACTTGGTAGTAGTGCTTGG 58.933 50.000 0.00 0.00 45.38 3.61
2010 2205 3.135895 ACACTTGGTAGTAGTGCTTGGTT 59.864 43.478 0.00 0.00 45.38 3.67
2011 2206 3.746492 CACTTGGTAGTAGTGCTTGGTTC 59.254 47.826 0.00 0.00 36.88 3.62
2012 2207 3.244457 ACTTGGTAGTAGTGCTTGGTTCC 60.244 47.826 0.00 0.00 31.21 3.62
2014 2209 2.976882 TGGTAGTAGTGCTTGGTTCCTT 59.023 45.455 0.00 0.00 0.00 3.36
2016 2211 4.001652 GGTAGTAGTGCTTGGTTCCTTTC 58.998 47.826 0.00 0.00 0.00 2.62
2017 2212 4.262938 GGTAGTAGTGCTTGGTTCCTTTCT 60.263 45.833 0.00 0.00 0.00 2.52
2019 2214 4.390264 AGTAGTGCTTGGTTCCTTTCTTC 58.610 43.478 0.00 0.00 0.00 2.87
2025 2220 3.504134 GCTTGGTTCCTTTCTTCTTCTCC 59.496 47.826 0.00 0.00 0.00 3.71
2044 2239 9.053472 TCTTCTCCCACTAATTGAGGTTAAATA 57.947 33.333 0.00 0.00 0.00 1.40
2045 2240 9.110502 CTTCTCCCACTAATTGAGGTTAAATAC 57.889 37.037 0.00 0.00 0.00 1.89
2073 2273 3.503800 ACCAAAGAGGGTGTCCTTTAC 57.496 47.619 0.00 0.00 45.05 2.01
2081 2281 5.454966 AGAGGGTGTCCTTTACATGTTTTT 58.545 37.500 2.30 0.00 45.05 1.94
2084 2284 7.013942 AGAGGGTGTCCTTTACATGTTTTTAAC 59.986 37.037 2.30 0.00 45.05 2.01
2090 2290 8.524487 TGTCCTTTACATGTTTTTAACAAGTGT 58.476 29.630 2.30 7.18 45.86 3.55
2094 2294 8.480643 TTTACATGTTTTTAACAAGTGTTGGG 57.519 30.769 2.30 0.00 45.86 4.12
2099 2299 6.166982 TGTTTTTAACAAGTGTTGGGGAAAG 58.833 36.000 6.94 0.00 38.72 2.62
2104 2304 7.899648 TTAACAAGTGTTGGGGAAAGATTTA 57.100 32.000 6.94 0.00 38.90 1.40
2178 2378 1.273606 ACATGTAGAACAGTCAGCGCT 59.726 47.619 2.64 2.64 0.00 5.92
2201 2401 5.237815 TGGTAAAGTTCAGATAGTGCTGTG 58.762 41.667 0.00 0.00 37.20 3.66
2221 2421 0.324091 CCCCTTTCTGCATTGAGGCT 60.324 55.000 0.00 0.00 34.04 4.58
2240 2440 2.094494 GCTAAGGAAAAGCTGGCCTTTC 60.094 50.000 17.10 5.39 42.82 2.62
2241 2441 1.342074 AAGGAAAAGCTGGCCTTTCC 58.658 50.000 21.25 21.25 42.82 3.13
2250 2450 3.365265 GGCCTTTCCCGTGCTGTG 61.365 66.667 0.00 0.00 0.00 3.66
2259 2459 2.345244 CGTGCTGTGAAGCCTCCT 59.655 61.111 0.00 0.00 0.00 3.69
2260 2460 1.591703 CGTGCTGTGAAGCCTCCTA 59.408 57.895 0.00 0.00 0.00 2.94
2287 2487 1.068333 CACGTCCTTGGCAATTTCCTG 60.068 52.381 0.00 0.00 0.00 3.86
2293 2493 2.093869 CCTTGGCAATTTCCTGGTGATG 60.094 50.000 0.00 0.00 0.00 3.07
2296 2496 3.088532 TGGCAATTTCCTGGTGATGTAC 58.911 45.455 0.00 0.00 0.00 2.90
2305 2505 1.732259 CTGGTGATGTACGTGCCTTTC 59.268 52.381 0.00 0.00 0.00 2.62
2332 2532 5.183904 GGTCTGAATTACATAATCATGGGGC 59.816 44.000 0.00 0.00 36.39 5.80
2333 2533 5.183904 GTCTGAATTACATAATCATGGGGCC 59.816 44.000 0.00 0.00 36.39 5.80
2446 2647 1.847328 TGACATTCCTCGGCTAGTCA 58.153 50.000 0.00 0.00 34.02 3.41
2479 2680 0.469892 CCTTCTGGGGCTTGTGGTTT 60.470 55.000 0.00 0.00 0.00 3.27
2492 2693 1.135257 TGTGGTTTGCGGTTTTGTCAG 60.135 47.619 0.00 0.00 0.00 3.51
2622 2823 2.489971 CGAGTTGGGCTTCTGTTTGTA 58.510 47.619 0.00 0.00 0.00 2.41
2681 2882 3.753272 GCTTGCAAGTCATCCACTTTCTA 59.247 43.478 26.55 0.00 43.38 2.10
2697 2898 2.936919 TCTATGTGATGGATGGTGGC 57.063 50.000 0.00 0.00 0.00 5.01
2705 2906 0.461339 ATGGATGGTGGCGACGTTAC 60.461 55.000 0.00 0.00 0.00 2.50
2713 2914 1.389106 GTGGCGACGTTACTTAAGCTG 59.611 52.381 1.29 0.00 0.00 4.24
2719 2920 3.122948 CGACGTTACTTAAGCTGTTGCAT 59.877 43.478 1.29 0.00 42.74 3.96
2729 2930 6.207417 ACTTAAGCTGTTGCATAGTTGTTGAT 59.793 34.615 1.29 0.00 42.74 2.57
2758 2959 8.341892 GTTGAAAACTTGGGAAGATAGATTCT 57.658 34.615 0.00 0.00 45.32 2.40
2768 2969 8.158025 TGGGAAGATAGATTCTTTTAACCTGA 57.842 34.615 0.00 0.00 44.88 3.86
2769 2970 8.267894 TGGGAAGATAGATTCTTTTAACCTGAG 58.732 37.037 0.00 0.00 44.88 3.35
2789 3013 6.121776 TGAGTACACCCTTTGTATCATTGT 57.878 37.500 0.00 0.00 42.82 2.71
2790 3014 6.170506 TGAGTACACCCTTTGTATCATTGTC 58.829 40.000 0.00 0.00 42.82 3.18
2792 3016 4.657814 ACACCCTTTGTATCATTGTCCT 57.342 40.909 0.00 0.00 36.32 3.85
2799 3023 8.333235 ACCCTTTGTATCATTGTCCTAAATGTA 58.667 33.333 0.00 0.00 38.46 2.29
2800 3024 8.621286 CCCTTTGTATCATTGTCCTAAATGTAC 58.379 37.037 0.00 0.00 38.46 2.90
2801 3025 9.396022 CCTTTGTATCATTGTCCTAAATGTACT 57.604 33.333 0.00 0.00 38.46 2.73
2815 3039 7.232941 TCCTAAATGTACTCTGCTATCCCTTAC 59.767 40.741 0.00 0.00 0.00 2.34
2857 3081 4.378874 GCTGATGCAGTACCTTGTTTCTTC 60.379 45.833 0.00 0.00 39.41 2.87
2861 3085 4.713553 TGCAGTACCTTGTTTCTTCATCA 58.286 39.130 0.00 0.00 0.00 3.07
2862 3086 4.756642 TGCAGTACCTTGTTTCTTCATCAG 59.243 41.667 0.00 0.00 0.00 2.90
2863 3087 4.997395 GCAGTACCTTGTTTCTTCATCAGA 59.003 41.667 0.00 0.00 0.00 3.27
2881 3105 3.701542 TCAGAAGACTGCCGTGATCTAAT 59.298 43.478 0.00 0.00 43.17 1.73
2894 3118 7.552687 TGCCGTGATCTAATCTTCTGTTAATTT 59.447 33.333 0.00 0.00 0.00 1.82
2896 3120 7.852945 CCGTGATCTAATCTTCTGTTAATTTGC 59.147 37.037 0.00 0.00 0.00 3.68
2924 3148 2.495270 GCAGATGGAGAGAGTCTGTGAA 59.505 50.000 0.00 0.00 41.04 3.18
2964 3188 0.245539 CAAGCAAGCCAAGATGGTGG 59.754 55.000 0.00 0.00 40.46 4.61
2972 3196 0.032813 CCAAGATGGTGGCTGGGATT 60.033 55.000 0.00 0.00 31.35 3.01
2974 3198 1.002069 AAGATGGTGGCTGGGATTGA 58.998 50.000 0.00 0.00 0.00 2.57
2978 3202 0.329261 TGGTGGCTGGGATTGAAGAG 59.671 55.000 0.00 0.00 0.00 2.85
2981 3205 0.254178 TGGCTGGGATTGAAGAGAGC 59.746 55.000 0.00 0.00 0.00 4.09
2996 3220 2.555757 AGAGAGCTGGCACAATTTTGTC 59.444 45.455 0.00 0.00 39.91 3.18
3008 3232 3.278574 CAATTTTGTCCCAGCTATCCGA 58.721 45.455 0.00 0.00 0.00 4.55
3062 3286 1.019673 ACATGGAAGATGCGCATGTC 58.980 50.000 30.76 23.20 31.70 3.06
3086 3310 0.696501 TCCCCAACCTAGCCAAGAAC 59.303 55.000 0.00 0.00 0.00 3.01
3092 3316 2.558359 CAACCTAGCCAAGAACTTTGGG 59.442 50.000 7.93 0.00 39.90 4.12
3143 3367 6.780198 TCCTTCTATGGGGTAATTGCTTAT 57.220 37.500 0.00 0.00 0.00 1.73
3169 3394 5.297776 CACTTCTCAAATCTGGTTGTTCAGT 59.702 40.000 0.00 0.00 36.25 3.41
3174 3399 5.890334 TCAAATCTGGTTGTTCAGTTTCAC 58.110 37.500 0.00 0.00 36.25 3.18
3178 3403 5.092554 TCTGGTTGTTCAGTTTCACAGTA 57.907 39.130 0.00 0.00 36.25 2.74
3186 3411 6.791303 TGTTCAGTTTCACAGTAAATGTTCC 58.209 36.000 0.00 0.00 41.41 3.62
3187 3412 6.601613 TGTTCAGTTTCACAGTAAATGTTCCT 59.398 34.615 0.00 0.00 41.41 3.36
3191 3416 8.527810 TCAGTTTCACAGTAAATGTTCCTTTTT 58.472 29.630 0.00 0.00 41.41 1.94
3199 3424 9.349713 ACAGTAAATGTTCCTTTTTCTGACATA 57.650 29.630 12.72 0.00 39.96 2.29
3205 3430 9.865321 AATGTTCCTTTTTCTGACATAATCATG 57.135 29.630 0.00 0.00 36.48 3.07
3224 3449 3.868757 TGTCCTTACGATTCTCAGGTG 57.131 47.619 0.00 0.00 0.00 4.00
3278 3503 1.163420 ATGTTCGCGACAACTTGCCA 61.163 50.000 9.15 0.00 42.62 4.92
3317 3542 1.468127 GCTGCTTTTCCTCTTGAGCTC 59.532 52.381 6.82 6.82 36.16 4.09
3342 3567 0.951040 GGCAGTCAGGAGGTCGTTTG 60.951 60.000 0.00 0.00 0.00 2.93
3431 3656 4.389687 GCACTTACAGCAATGATTTTTGGG 59.610 41.667 0.00 0.00 0.00 4.12
3439 3664 4.463891 AGCAATGATTTTTGGGAGGTACTG 59.536 41.667 0.00 0.00 41.55 2.74
3443 3668 4.403734 TGATTTTTGGGAGGTACTGTTCC 58.596 43.478 0.00 0.00 41.55 3.62
3444 3669 4.105697 TGATTTTTGGGAGGTACTGTTCCT 59.894 41.667 5.59 5.59 41.55 3.36
3459 3684 1.067295 TTCCTGTGACCTGCAATCCT 58.933 50.000 0.00 0.00 0.00 3.24
3465 3690 1.203441 TGACCTGCAATCCTGGCTCT 61.203 55.000 0.00 0.00 36.07 4.09
3471 3696 3.350833 CTGCAATCCTGGCTCTTACTTT 58.649 45.455 0.00 0.00 0.00 2.66
3473 3698 4.517285 TGCAATCCTGGCTCTTACTTTAG 58.483 43.478 0.00 0.00 0.00 1.85
3478 3703 7.283354 GCAATCCTGGCTCTTACTTTAGTATTT 59.717 37.037 0.00 0.00 0.00 1.40
3504 3729 8.187913 TCATTTTATTGGTGACCAGAAAATCA 57.812 30.769 24.69 16.39 38.07 2.57
3512 3737 5.479724 TGGTGACCAGAAAATCATAATGCAA 59.520 36.000 0.00 0.00 0.00 4.08
3513 3738 6.154877 TGGTGACCAGAAAATCATAATGCAAT 59.845 34.615 0.00 0.00 0.00 3.56
3531 3756 4.772624 TGCAATAGAGTACTGGAGTTGACT 59.227 41.667 0.00 0.00 0.00 3.41
3567 3792 5.825679 TGTTCCTGAAGCTGCTTTTAAACTA 59.174 36.000 17.10 7.35 0.00 2.24
3671 4036 2.905075 TGTGATACTGCTACCATGCAC 58.095 47.619 0.00 0.00 38.12 4.57
3672 4037 2.235898 TGTGATACTGCTACCATGCACA 59.764 45.455 0.00 0.00 38.12 4.57
3673 4038 3.118298 TGTGATACTGCTACCATGCACAT 60.118 43.478 0.00 0.00 38.12 3.21
3677 4042 1.814394 ACTGCTACCATGCACATTGTG 59.186 47.619 12.54 12.54 38.12 3.33
3678 4043 1.814394 CTGCTACCATGCACATTGTGT 59.186 47.619 17.64 0.68 38.12 3.72
3680 4045 2.030096 TGCTACCATGCACATTGTGTTG 60.030 45.455 17.64 14.57 38.12 3.33
3826 4192 3.869272 GCTGGTGATTGCCGAGCG 61.869 66.667 0.00 0.00 0.00 5.03
3832 4198 2.586357 GATTGCCGAGCGGTCCTC 60.586 66.667 9.39 1.32 37.65 3.71
3901 4267 1.541147 TGCCTGAATGAAAGAAAGCGG 59.459 47.619 0.00 0.00 0.00 5.52
3904 4270 2.162408 CCTGAATGAAAGAAAGCGGGTC 59.838 50.000 0.00 0.00 0.00 4.46
4003 4369 0.106868 TCGACGGCCTGAAGGAGATA 60.107 55.000 0.00 0.00 37.39 1.98
4069 4435 1.079819 CACGCTGACCAAGGACGAT 60.080 57.895 0.00 0.00 0.00 3.73
4246 5098 3.718210 GACGGCGGTCATGGTCTCC 62.718 68.421 18.61 0.00 42.91 3.71
4361 5213 4.128580 TGGAAGGCCAGTGATCGA 57.871 55.556 5.01 0.00 39.92 3.59
4362 5214 2.607811 TGGAAGGCCAGTGATCGAT 58.392 52.632 5.01 0.00 39.92 3.59
4363 5215 0.465705 TGGAAGGCCAGTGATCGATC 59.534 55.000 18.72 18.72 39.92 3.69
4364 5216 0.755686 GGAAGGCCAGTGATCGATCT 59.244 55.000 25.02 4.07 0.00 2.75
4365 5217 1.270041 GGAAGGCCAGTGATCGATCTC 60.270 57.143 25.02 21.25 0.00 2.75
4396 5248 1.745489 ATTGTCGCCGCCTTCTTCC 60.745 57.895 0.00 0.00 0.00 3.46
4521 5380 1.176527 CTCACCCGCCATTGTGAATT 58.823 50.000 0.00 0.00 40.71 2.17
4522 5381 0.887247 TCACCCGCCATTGTGAATTG 59.113 50.000 0.00 0.00 38.48 2.32
4523 5382 0.602562 CACCCGCCATTGTGAATTGT 59.397 50.000 0.00 0.00 34.37 2.71
4524 5383 1.000731 CACCCGCCATTGTGAATTGTT 59.999 47.619 0.00 0.00 34.37 2.83
4570 5429 3.738434 TGGGAGCTTAATTAGGGTGGTA 58.262 45.455 3.79 0.00 0.00 3.25
4571 5430 4.312487 TGGGAGCTTAATTAGGGTGGTAT 58.688 43.478 3.79 0.00 0.00 2.73
4572 5431 5.478844 TGGGAGCTTAATTAGGGTGGTATA 58.521 41.667 3.79 0.00 0.00 1.47
4573 5432 5.912354 TGGGAGCTTAATTAGGGTGGTATAA 59.088 40.000 3.79 0.00 0.00 0.98
4663 5525 4.037565 CCCCCTGTTTAAGTTTTGTCTGTC 59.962 45.833 0.00 0.00 0.00 3.51
4745 5625 7.924947 TGTGTTGATCACTGATAAGATGAGATC 59.075 37.037 0.00 0.00 46.27 2.75
4822 5717 8.754080 GCTATGTTGTTATCTACCATCCTCTAT 58.246 37.037 0.00 0.00 0.00 1.98
4852 5747 3.714798 ACAACAAGAAACTACTCCCTCCA 59.285 43.478 0.00 0.00 0.00 3.86
4854 5749 3.588569 ACAAGAAACTACTCCCTCCACT 58.411 45.455 0.00 0.00 0.00 4.00
4856 5751 4.202367 ACAAGAAACTACTCCCTCCACTTG 60.202 45.833 0.00 0.00 38.34 3.16
4860 5755 4.625607 AACTACTCCCTCCACTTGAAAG 57.374 45.455 0.00 0.00 0.00 2.62
4930 5843 9.301153 ACAAGCAAGTAAAATTAACAGAAACTG 57.699 29.630 0.00 0.00 37.52 3.16
4971 8755 6.261381 AGACACAAGCAAGTAAAATTAACGGA 59.739 34.615 0.00 0.00 0.00 4.69
5151 8970 6.870971 AAAACGAGCCAGTAAAATAACAGA 57.129 33.333 0.00 0.00 0.00 3.41
5152 8971 6.870971 AAACGAGCCAGTAAAATAACAGAA 57.129 33.333 0.00 0.00 0.00 3.02
5153 8972 6.870971 AACGAGCCAGTAAAATAACAGAAA 57.129 33.333 0.00 0.00 0.00 2.52
5154 8973 6.237313 ACGAGCCAGTAAAATAACAGAAAC 57.763 37.500 0.00 0.00 0.00 2.78
5155 8974 5.995897 ACGAGCCAGTAAAATAACAGAAACT 59.004 36.000 0.00 0.00 0.00 2.66
5156 8975 7.156673 ACGAGCCAGTAAAATAACAGAAACTA 58.843 34.615 0.00 0.00 0.00 2.24
5157 8976 7.822822 ACGAGCCAGTAAAATAACAGAAACTAT 59.177 33.333 0.00 0.00 0.00 2.12
5158 8977 9.309516 CGAGCCAGTAAAATAACAGAAACTATA 57.690 33.333 0.00 0.00 0.00 1.31
5284 9103 3.197265 GCACATTTGCCAACAGTTTTCT 58.803 40.909 0.00 0.00 43.66 2.52
5288 9107 3.325293 TTTGCCAACAGTTTTCTTGCA 57.675 38.095 0.00 0.00 0.00 4.08
5295 9114 5.175673 GCCAACAGTTTTCTTGCATAGTTTC 59.824 40.000 0.00 0.00 0.00 2.78
5296 9115 5.399301 CCAACAGTTTTCTTGCATAGTTTCG 59.601 40.000 0.00 0.00 0.00 3.46
5312 9131 2.074547 TTCGAAAACTAGCCTGGACG 57.925 50.000 0.00 0.00 0.00 4.79
5317 9136 3.120649 CGAAAACTAGCCTGGACGAAAAG 60.121 47.826 0.00 0.00 0.00 2.27
5323 9142 0.875059 GCCTGGACGAAAAGGTTGAG 59.125 55.000 0.00 0.00 35.86 3.02
5329 9148 2.994578 GGACGAAAAGGTTGAGACTAGC 59.005 50.000 0.00 0.00 0.00 3.42
5330 9149 2.994578 GACGAAAAGGTTGAGACTAGCC 59.005 50.000 0.00 0.00 0.00 3.93
5331 9150 2.289506 ACGAAAAGGTTGAGACTAGCCC 60.290 50.000 0.00 0.00 0.00 5.19
5332 9151 2.289444 CGAAAAGGTTGAGACTAGCCCA 60.289 50.000 0.00 0.00 0.00 5.36
5346 9165 0.182775 AGCCCAGACAAAAAGGACGT 59.817 50.000 0.00 0.00 0.00 4.34
5347 9166 1.418637 AGCCCAGACAAAAAGGACGTA 59.581 47.619 0.00 0.00 0.00 3.57
5348 9167 1.804748 GCCCAGACAAAAAGGACGTAG 59.195 52.381 0.00 0.00 0.00 3.51
5349 9168 2.549349 GCCCAGACAAAAAGGACGTAGA 60.549 50.000 0.00 0.00 0.00 2.59
5352 9171 4.562757 CCCAGACAAAAAGGACGTAGATCA 60.563 45.833 0.00 0.00 0.00 2.92
5354 9173 5.292101 CCAGACAAAAAGGACGTAGATCATC 59.708 44.000 0.00 0.00 0.00 2.92
5355 9174 5.869344 CAGACAAAAAGGACGTAGATCATCA 59.131 40.000 0.00 0.00 0.00 3.07
5356 9175 6.536582 CAGACAAAAAGGACGTAGATCATCAT 59.463 38.462 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 2.430367 GACGTGGGCTTCAAGGGT 59.570 61.111 0.00 0.00 0.00 4.34
34 36 0.108898 CCTTCCTCAGCACTCGACTG 60.109 60.000 0.00 0.00 36.44 3.51
127 131 5.972382 GGACTAAAAGTAGCTACTCGACATG 59.028 44.000 26.21 15.82 34.99 3.21
128 132 5.651139 TGGACTAAAAGTAGCTACTCGACAT 59.349 40.000 26.21 12.50 34.99 3.06
152 156 1.585006 CTACCGACAAGCGTCCACT 59.415 57.895 0.00 0.00 39.11 4.00
164 168 2.948093 GCATTACGAACGCTACCGA 58.052 52.632 0.00 0.00 38.29 4.69
187 191 3.622060 AAAGCCGCCCACGCTACAT 62.622 57.895 0.00 0.00 38.22 2.29
190 194 0.464870 TATAAAAGCCGCCCACGCTA 59.535 50.000 0.00 0.00 38.22 4.26
198 202 4.357018 AGCAAAAGAGTATAAAAGCCGC 57.643 40.909 0.00 0.00 0.00 6.53
280 284 9.565090 CCTGGATGAGAATTATCATACTTGAAA 57.435 33.333 22.59 4.80 40.63 2.69
284 288 8.267620 TCACCTGGATGAGAATTATCATACTT 57.732 34.615 22.59 7.58 40.63 2.24
303 307 6.861065 TTAAACTTGCTTACTTCTCACCTG 57.139 37.500 0.00 0.00 0.00 4.00
313 317 9.425577 AGTGAAGACTAGATTAAACTTGCTTAC 57.574 33.333 0.00 0.00 0.00 2.34
332 336 5.534654 CCATGGGTTTCTTGTAAAGTGAAGA 59.465 40.000 2.85 0.00 46.34 2.87
367 390 2.966309 GAGCGCAGGGTTTTCGTGG 61.966 63.158 11.47 0.00 0.00 4.94
378 441 3.657634 ACATCCAATATGTAGAGCGCAG 58.342 45.455 11.47 0.00 0.00 5.18
380 443 7.759886 TCTTATTACATCCAATATGTAGAGCGC 59.240 37.037 0.00 0.00 36.09 5.92
401 464 9.308000 ACCTCGAGAAGATGATTAAGATCTTAT 57.692 33.333 15.71 2.01 39.72 1.73
402 465 8.698973 ACCTCGAGAAGATGATTAAGATCTTA 57.301 34.615 15.71 11.24 39.72 2.10
403 466 7.595819 ACCTCGAGAAGATGATTAAGATCTT 57.404 36.000 15.71 13.56 41.83 2.40
404 467 8.698973 TTACCTCGAGAAGATGATTAAGATCT 57.301 34.615 15.71 0.00 33.28 2.75
405 468 9.751542 TTTTACCTCGAGAAGATGATTAAGATC 57.248 33.333 15.71 0.00 0.00 2.75
423 486 6.775594 ACCATGCTCCTTTATTTTTACCTC 57.224 37.500 0.00 0.00 0.00 3.85
426 489 9.869757 ATGTTTACCATGCTCCTTTATTTTTAC 57.130 29.630 0.00 0.00 30.69 2.01
442 508 7.839680 AAGAGGAAGAAAACATGTTTACCAT 57.160 32.000 23.53 11.78 31.63 3.55
443 509 7.654022 AAAGAGGAAGAAAACATGTTTACCA 57.346 32.000 23.53 0.00 31.63 3.25
462 533 0.734942 CGCCAATGCTGCCAAAAGAG 60.735 55.000 0.00 0.00 34.43 2.85
486 558 4.539870 TCTTTTGCGAGAGAAAAATGCTG 58.460 39.130 0.00 0.00 46.92 4.41
488 560 4.560427 GGATCTTTTGCGAGAGAAAAATGC 59.440 41.667 0.00 0.00 46.92 3.56
495 567 1.482593 GAGGGGATCTTTTGCGAGAGA 59.517 52.381 0.00 0.00 0.00 3.10
496 568 1.474143 GGAGGGGATCTTTTGCGAGAG 60.474 57.143 0.00 0.00 0.00 3.20
497 569 0.541863 GGAGGGGATCTTTTGCGAGA 59.458 55.000 0.00 0.00 0.00 4.04
498 570 0.811616 CGGAGGGGATCTTTTGCGAG 60.812 60.000 0.00 0.00 0.00 5.03
499 571 1.220749 CGGAGGGGATCTTTTGCGA 59.779 57.895 0.00 0.00 0.00 5.10
500 572 3.813596 CGGAGGGGATCTTTTGCG 58.186 61.111 0.00 0.00 0.00 4.85
514 586 0.601841 GAGCTCGTTTTTCACCCGGA 60.602 55.000 0.73 0.00 0.00 5.14
518 590 1.264288 CTGTGGAGCTCGTTTTTCACC 59.736 52.381 7.83 0.00 0.00 4.02
547 619 8.815565 TCTTGGCAGATGGTTTGTTATTATTA 57.184 30.769 0.00 0.00 0.00 0.98
550 622 7.531857 TTTCTTGGCAGATGGTTTGTTATTA 57.468 32.000 0.00 0.00 0.00 0.98
552 624 6.267471 TCTTTTCTTGGCAGATGGTTTGTTAT 59.733 34.615 0.00 0.00 0.00 1.89
553 625 5.596361 TCTTTTCTTGGCAGATGGTTTGTTA 59.404 36.000 0.00 0.00 0.00 2.41
556 628 4.589216 TCTTTTCTTGGCAGATGGTTTG 57.411 40.909 0.00 0.00 0.00 2.93
559 631 4.473444 TCTTTCTTTTCTTGGCAGATGGT 58.527 39.130 0.00 0.00 0.00 3.55
560 632 5.458041 TTCTTTCTTTTCTTGGCAGATGG 57.542 39.130 0.00 0.00 0.00 3.51
561 633 7.707893 TCTTTTTCTTTCTTTTCTTGGCAGATG 59.292 33.333 0.00 0.00 0.00 2.90
564 636 7.832503 TTCTTTTTCTTTCTTTTCTTGGCAG 57.167 32.000 0.00 0.00 0.00 4.85
565 637 8.614469 TTTTCTTTTTCTTTCTTTTCTTGGCA 57.386 26.923 0.00 0.00 0.00 4.92
614 698 1.826487 GGGGAACACGTGCTGGTTT 60.826 57.895 17.22 0.94 0.00 3.27
770 871 1.521681 CTCTGTTTCGATCGGGGGC 60.522 63.158 16.41 4.23 0.00 5.80
855 962 0.548510 GGATTGAAGGAGGAGTGGGG 59.451 60.000 0.00 0.00 0.00 4.96
931 1061 2.811317 CTGCCTCGCCAAGACGAC 60.811 66.667 0.00 0.00 37.09 4.34
937 1067 2.669569 GTTGCTCTGCCTCGCCAA 60.670 61.111 0.00 0.00 0.00 4.52
938 1068 3.889134 CTGTTGCTCTGCCTCGCCA 62.889 63.158 0.00 0.00 0.00 5.69
940 1070 2.047844 TCTGTTGCTCTGCCTCGC 60.048 61.111 0.00 0.00 0.00 5.03
941 1071 1.447489 CCTCTGTTGCTCTGCCTCG 60.447 63.158 0.00 0.00 0.00 4.63
951 1081 2.527951 CTTCCTCCCGGCCTCTGTTG 62.528 65.000 0.00 0.00 0.00 3.33
960 1114 0.173708 CGACTTCTTCTTCCTCCCGG 59.826 60.000 0.00 0.00 0.00 5.73
966 1120 1.071567 CGCCGACGACTTCTTCTTCC 61.072 60.000 0.00 0.00 43.93 3.46
1072 1226 4.505970 CAGGGGAGGGGAGGGGAG 62.506 77.778 0.00 0.00 0.00 4.30
1133 1287 1.675641 ACAGGGGCAAGAACATCGC 60.676 57.895 0.00 0.00 0.00 4.58
1145 1308 2.438434 GCGGAATCCACACAGGGG 60.438 66.667 0.00 0.00 38.24 4.79
1146 1309 1.450312 GAGCGGAATCCACACAGGG 60.450 63.158 0.00 0.00 38.24 4.45
1159 1322 2.509336 ACCGAATTCAGCGAGCGG 60.509 61.111 6.22 0.00 46.83 5.52
1182 1345 4.116328 TTCTCGCGGCGGACAGAG 62.116 66.667 23.46 12.07 0.00 3.35
1207 1370 8.572855 AGGAGAAAGAAAGACATCTATTTTGG 57.427 34.615 0.00 0.00 0.00 3.28
1240 1403 3.064207 ACAACTAACACGCACGAATCAT 58.936 40.909 0.00 0.00 0.00 2.45
1323 1486 0.588252 CGAAGCAACCAACTCACTGG 59.412 55.000 0.00 0.00 42.68 4.00
1324 1487 1.003545 CACGAAGCAACCAACTCACTG 60.004 52.381 0.00 0.00 0.00 3.66
1419 1586 4.116238 GTGCCAAATAGTCTCTGCTACTC 58.884 47.826 0.00 0.00 0.00 2.59
1427 1594 9.819267 ATAAGTAAACTAGTGCCAAATAGTCTC 57.181 33.333 0.00 0.00 31.03 3.36
1431 1598 8.673711 TGCAATAAGTAAACTAGTGCCAAATAG 58.326 33.333 0.00 0.00 0.00 1.73
1650 1818 5.816919 ACAAACAATTCTTCACACCTTACG 58.183 37.500 0.00 0.00 0.00 3.18
1652 1820 6.459024 CCGAACAAACAATTCTTCACACCTTA 60.459 38.462 0.00 0.00 0.00 2.69
1663 1831 1.006825 GGCCGCCGAACAAACAATTC 61.007 55.000 0.00 0.00 0.00 2.17
1665 1833 2.648454 GGCCGCCGAACAAACAAT 59.352 55.556 0.00 0.00 0.00 2.71
1666 1834 3.597728 GGGCCGCCGAACAAACAA 61.598 61.111 2.55 0.00 0.00 2.83
1667 1835 4.877619 TGGGCCGCCGAACAAACA 62.878 61.111 2.55 0.00 0.00 2.83
1669 1837 3.776347 TTCTGGGCCGCCGAACAAA 62.776 57.895 2.55 0.00 0.00 2.83
1683 1863 5.295540 GCTTAATCCCAGCTAGAAACTTCTG 59.704 44.000 2.12 0.00 38.19 3.02
1806 1995 2.185004 AGCACCGCATAAGAACAAGT 57.815 45.000 0.00 0.00 0.00 3.16
1808 1997 2.483877 CAGAAGCACCGCATAAGAACAA 59.516 45.455 0.00 0.00 0.00 2.83
1809 1998 2.076100 CAGAAGCACCGCATAAGAACA 58.924 47.619 0.00 0.00 0.00 3.18
1810 1999 2.346803 TCAGAAGCACCGCATAAGAAC 58.653 47.619 0.00 0.00 0.00 3.01
1811 2000 2.760634 TCAGAAGCACCGCATAAGAA 57.239 45.000 0.00 0.00 0.00 2.52
1812 2001 2.483714 GGATCAGAAGCACCGCATAAGA 60.484 50.000 0.00 0.00 0.00 2.10
1813 2002 1.869767 GGATCAGAAGCACCGCATAAG 59.130 52.381 0.00 0.00 0.00 1.73
1836 2025 2.304470 TCCCACACGAGGATTTTGATCA 59.696 45.455 0.00 0.00 0.00 2.92
1847 2036 1.806542 CAACTGGAAATCCCACACGAG 59.193 52.381 0.00 0.00 40.82 4.18
1850 2039 1.535462 CGTCAACTGGAAATCCCACAC 59.465 52.381 0.00 0.00 40.82 3.82
1854 2043 1.165270 CCACGTCAACTGGAAATCCC 58.835 55.000 0.00 0.00 34.29 3.85
1881 2070 3.279875 GGCGGACGAATGGATGGC 61.280 66.667 0.00 0.00 0.00 4.40
1892 2081 0.104304 AATATCCTGTGACGGCGGAC 59.896 55.000 13.24 8.21 0.00 4.79
1893 2082 0.828022 AAATATCCTGTGACGGCGGA 59.172 50.000 13.24 0.00 0.00 5.54
1894 2083 0.937304 CAAATATCCTGTGACGGCGG 59.063 55.000 13.24 0.00 0.00 6.13
1895 2084 0.304705 GCAAATATCCTGTGACGGCG 59.695 55.000 4.80 4.80 0.00 6.46
1896 2085 1.064060 GTGCAAATATCCTGTGACGGC 59.936 52.381 0.00 0.00 0.00 5.68
1897 2086 2.352651 CTGTGCAAATATCCTGTGACGG 59.647 50.000 0.00 0.00 0.00 4.79
1898 2087 3.261580 TCTGTGCAAATATCCTGTGACG 58.738 45.455 0.00 0.00 0.00 4.35
1899 2088 4.507710 TCTCTGTGCAAATATCCTGTGAC 58.492 43.478 0.00 0.00 0.00 3.67
1900 2089 4.824479 TCTCTGTGCAAATATCCTGTGA 57.176 40.909 0.00 0.00 0.00 3.58
1901 2090 5.645067 TCTTTCTCTGTGCAAATATCCTGTG 59.355 40.000 0.00 0.00 0.00 3.66
1902 2091 5.809001 TCTTTCTCTGTGCAAATATCCTGT 58.191 37.500 0.00 0.00 0.00 4.00
1903 2092 6.939132 ATCTTTCTCTGTGCAAATATCCTG 57.061 37.500 0.00 0.00 0.00 3.86
1904 2093 9.638176 AAATATCTTTCTCTGTGCAAATATCCT 57.362 29.630 0.00 0.00 0.00 3.24
1905 2094 9.674824 CAAATATCTTTCTCTGTGCAAATATCC 57.325 33.333 0.00 0.00 0.00 2.59
1911 2100 5.963176 TGCAAATATCTTTCTCTGTGCAA 57.037 34.783 0.00 0.00 0.00 4.08
1913 2102 6.037940 TCAGATGCAAATATCTTTCTCTGTGC 59.962 38.462 0.00 0.00 35.28 4.57
1915 2104 8.571461 TTTCAGATGCAAATATCTTTCTCTGT 57.429 30.769 0.00 0.00 35.28 3.41
1916 2105 8.675504 ACTTTCAGATGCAAATATCTTTCTCTG 58.324 33.333 0.00 0.00 35.28 3.35
1917 2106 8.804912 ACTTTCAGATGCAAATATCTTTCTCT 57.195 30.769 0.00 0.00 35.28 3.10
1964 2159 5.288232 TGAACTTTGCAGACGTTGATTTTTG 59.712 36.000 0.00 0.00 0.00 2.44
2004 2199 4.075682 GGGAGAAGAAGAAAGGAACCAAG 58.924 47.826 0.00 0.00 0.00 3.61
2008 2203 4.359434 AGTGGGAGAAGAAGAAAGGAAC 57.641 45.455 0.00 0.00 0.00 3.62
2010 2205 6.272324 TCAATTAGTGGGAGAAGAAGAAAGGA 59.728 38.462 0.00 0.00 0.00 3.36
2011 2206 6.476378 TCAATTAGTGGGAGAAGAAGAAAGG 58.524 40.000 0.00 0.00 0.00 3.11
2012 2207 6.597280 CCTCAATTAGTGGGAGAAGAAGAAAG 59.403 42.308 0.00 0.00 0.00 2.62
2014 2209 5.548056 ACCTCAATTAGTGGGAGAAGAAGAA 59.452 40.000 0.00 0.00 35.15 2.52
2016 2211 5.428184 ACCTCAATTAGTGGGAGAAGAAG 57.572 43.478 0.00 0.00 35.15 2.85
2017 2212 5.843019 AACCTCAATTAGTGGGAGAAGAA 57.157 39.130 0.00 0.00 35.15 2.52
2019 2214 9.110502 GTATTTAACCTCAATTAGTGGGAGAAG 57.889 37.037 0.00 0.00 35.15 2.85
2073 2273 5.665459 TCCCCAACACTTGTTAAAAACATG 58.335 37.500 0.00 0.00 41.79 3.21
2081 2281 7.039363 CCATAAATCTTTCCCCAACACTTGTTA 60.039 37.037 0.00 0.00 36.32 2.41
2084 2284 5.245977 ACCATAAATCTTTCCCCAACACTTG 59.754 40.000 0.00 0.00 0.00 3.16
2090 2290 5.841237 TGTTGAACCATAAATCTTTCCCCAA 59.159 36.000 0.00 0.00 0.00 4.12
2094 2294 7.877612 ACCATTTGTTGAACCATAAATCTTTCC 59.122 33.333 0.00 0.00 0.00 3.13
2099 2299 9.868277 TGATTACCATTTGTTGAACCATAAATC 57.132 29.630 0.00 0.00 0.00 2.17
2104 2304 6.440010 TGGATGATTACCATTTGTTGAACCAT 59.560 34.615 0.00 0.00 35.17 3.55
2168 2368 1.461127 GAACTTTACCAGCGCTGACTG 59.539 52.381 38.06 23.49 37.42 3.51
2178 2378 5.237815 CACAGCACTATCTGAACTTTACCA 58.762 41.667 0.00 0.00 37.51 3.25
2201 2401 1.953231 GCCTCAATGCAGAAAGGGGC 61.953 60.000 11.71 8.91 0.00 5.80
2250 2450 0.456628 GTGTCGTCCTAGGAGGCTTC 59.543 60.000 23.96 16.74 34.61 3.86
2287 2487 2.094762 AGAAAGGCACGTACATCACC 57.905 50.000 0.00 0.00 0.00 4.02
2305 2505 7.826252 CCCCATGATTATGTAATTCAGACCTAG 59.174 40.741 0.00 0.00 32.21 3.02
2332 2532 1.200020 CAAGCTAAAGGGACAAAGCGG 59.800 52.381 0.00 0.00 39.94 5.52
2333 2533 1.401539 GCAAGCTAAAGGGACAAAGCG 60.402 52.381 0.00 0.00 39.94 4.68
2372 2573 4.473520 CCCACTACCTGCCTGCCG 62.474 72.222 0.00 0.00 0.00 5.69
2446 2647 3.093057 CCAGAAGGTGCTACTGAGTACT 58.907 50.000 0.00 0.00 38.30 2.73
2474 2675 1.135257 CACTGACAAAACCGCAAACCA 60.135 47.619 0.00 0.00 0.00 3.67
2479 2680 1.649390 AACGCACTGACAAAACCGCA 61.649 50.000 0.00 0.00 0.00 5.69
2492 2693 1.130955 CAAAATGCACAGGAACGCAC 58.869 50.000 0.00 0.00 41.79 5.34
2516 2717 5.296748 AGTGTGGGCAATCATAAACAAAAC 58.703 37.500 0.00 0.00 0.00 2.43
2528 2729 1.176527 CCATTTCGAGTGTGGGCAAT 58.823 50.000 5.23 0.00 0.00 3.56
2529 2730 1.523154 GCCATTTCGAGTGTGGGCAA 61.523 55.000 12.77 0.00 41.02 4.52
2622 2823 0.608640 CACCTAGCTGAAAGGGACGT 59.391 55.000 6.00 0.00 38.54 4.34
2661 2862 5.181811 CACATAGAAAGTGGATGACTTGCAA 59.818 40.000 0.00 0.00 44.68 4.08
2667 2868 5.674525 TCCATCACATAGAAAGTGGATGAC 58.325 41.667 0.00 0.00 37.58 3.06
2677 2878 2.485302 CGCCACCATCCATCACATAGAA 60.485 50.000 0.00 0.00 0.00 2.10
2681 2882 0.464373 GTCGCCACCATCCATCACAT 60.464 55.000 0.00 0.00 0.00 3.21
2697 2898 2.473609 TGCAACAGCTTAAGTAACGTCG 59.526 45.455 4.02 0.00 0.00 5.12
2705 2906 6.000891 TCAACAACTATGCAACAGCTTAAG 57.999 37.500 0.00 0.00 0.00 1.85
2713 2914 5.414454 TCAACCCTATCAACAACTATGCAAC 59.586 40.000 0.00 0.00 0.00 4.17
2719 2920 7.013846 CCAAGTTTTCAACCCTATCAACAACTA 59.986 37.037 0.00 0.00 0.00 2.24
2729 2930 4.799715 TCTTCCCAAGTTTTCAACCCTA 57.200 40.909 0.00 0.00 0.00 3.53
2753 2954 6.473758 AGGGTGTACTCAGGTTAAAAGAATC 58.526 40.000 0.00 0.00 0.00 2.52
2758 2959 5.757988 ACAAAGGGTGTACTCAGGTTAAAA 58.242 37.500 0.00 0.00 39.29 1.52
2764 2965 4.819105 TGATACAAAGGGTGTACTCAGG 57.181 45.455 0.00 0.00 45.51 3.86
2768 2969 5.250774 AGGACAATGATACAAAGGGTGTACT 59.749 40.000 0.00 0.00 45.51 2.73
2769 2970 5.497474 AGGACAATGATACAAAGGGTGTAC 58.503 41.667 0.00 0.00 45.51 2.90
2772 2973 7.122650 ACATTTAGGACAATGATACAAAGGGTG 59.877 37.037 0.48 0.00 37.55 4.61
2773 2974 7.182060 ACATTTAGGACAATGATACAAAGGGT 58.818 34.615 0.48 0.00 37.55 4.34
2774 2975 7.645058 ACATTTAGGACAATGATACAAAGGG 57.355 36.000 0.48 0.00 37.55 3.95
2789 3013 5.716979 AGGGATAGCAGAGTACATTTAGGA 58.283 41.667 0.00 0.00 0.00 2.94
2790 3014 6.426646 AAGGGATAGCAGAGTACATTTAGG 57.573 41.667 0.00 0.00 0.00 2.69
2792 3016 7.471539 GCAGTAAGGGATAGCAGAGTACATTTA 60.472 40.741 0.00 0.00 0.00 1.40
2799 3023 3.039252 AGCAGTAAGGGATAGCAGAGT 57.961 47.619 0.00 0.00 0.00 3.24
2800 3024 5.016173 AGATAGCAGTAAGGGATAGCAGAG 58.984 45.833 0.00 0.00 0.00 3.35
2801 3025 5.004361 AGATAGCAGTAAGGGATAGCAGA 57.996 43.478 0.00 0.00 0.00 4.26
2829 3053 3.076621 CAAGGTACTGCATCAGCTTTGA 58.923 45.455 8.86 0.00 40.86 2.69
2857 3081 2.159128 AGATCACGGCAGTCTTCTGATG 60.159 50.000 0.00 0.00 43.76 3.07
2861 3085 3.957497 AGATTAGATCACGGCAGTCTTCT 59.043 43.478 0.00 4.13 0.00 2.85
2862 3086 4.314740 AGATTAGATCACGGCAGTCTTC 57.685 45.455 0.00 0.00 0.00 2.87
2863 3087 4.404073 AGAAGATTAGATCACGGCAGTCTT 59.596 41.667 0.00 0.00 0.00 3.01
2871 3095 8.607459 AGCAAATTAACAGAAGATTAGATCACG 58.393 33.333 0.00 0.00 0.00 4.35
2881 3105 7.174772 TCTGCACATTAGCAAATTAACAGAAGA 59.825 33.333 0.00 0.00 45.13 2.87
2894 3118 2.767960 TCTCTCCATCTGCACATTAGCA 59.232 45.455 0.00 0.00 43.35 3.49
2896 3120 4.341806 AGACTCTCTCCATCTGCACATTAG 59.658 45.833 0.00 0.00 0.00 1.73
2924 3148 5.850557 TGAAATCAATGGACACTGTGTTT 57.149 34.783 15.54 2.58 0.00 2.83
2964 3188 1.666054 CAGCTCTCTTCAATCCCAGC 58.334 55.000 0.00 0.00 0.00 4.85
2968 3192 1.339438 TGTGCCAGCTCTCTTCAATCC 60.339 52.381 0.00 0.00 0.00 3.01
2972 3196 2.574006 AATTGTGCCAGCTCTCTTCA 57.426 45.000 0.00 0.00 0.00 3.02
2974 3198 2.961062 ACAAAATTGTGCCAGCTCTCTT 59.039 40.909 0.00 0.00 40.49 2.85
2978 3202 2.070262 GGACAAAATTGTGCCAGCTC 57.930 50.000 3.05 0.00 42.78 4.09
2996 3220 1.978473 CCCTGATCGGATAGCTGGG 59.022 63.158 2.08 7.09 45.10 4.45
3008 3232 1.971149 TGTCAGACCAATCCCCTGAT 58.029 50.000 0.00 0.00 38.92 2.90
3062 3286 1.152881 GGCTAGGTTGGGGATGCAG 60.153 63.158 0.00 0.00 0.00 4.41
3086 3310 2.870175 TCCACCATGTTGTACCCAAAG 58.130 47.619 0.00 0.00 30.94 2.77
3092 3316 4.943705 ACTTCATCATCCACCATGTTGTAC 59.056 41.667 0.00 0.00 34.79 2.90
3143 3367 5.885352 TGAACAACCAGATTTGAGAAGTGAA 59.115 36.000 0.00 0.00 0.00 3.18
3169 3394 8.744652 TCAGAAAAAGGAACATTTACTGTGAAA 58.255 29.630 13.54 0.00 38.39 2.69
3199 3424 5.129485 ACCTGAGAATCGTAAGGACATGATT 59.871 40.000 0.00 0.00 38.61 2.57
3205 3430 3.870633 ACACCTGAGAATCGTAAGGAC 57.129 47.619 6.03 0.00 38.61 3.85
3212 3437 3.372206 GTCCATCAAACACCTGAGAATCG 59.628 47.826 0.00 0.00 38.61 3.34
3224 3449 4.280677 TCTTTTCCACCATGTCCATCAAAC 59.719 41.667 0.00 0.00 0.00 2.93
3278 3503 0.175760 CATCTTCCACGATGACCCGT 59.824 55.000 0.00 0.00 42.63 5.28
3317 3542 1.254284 ACCTCCTGACTGCCTTCTCG 61.254 60.000 0.00 0.00 0.00 4.04
3380 3605 1.005215 CCAGAAGAAAGCCCATCCTGT 59.995 52.381 0.00 0.00 0.00 4.00
3431 3656 2.028930 CAGGTCACAGGAACAGTACCTC 60.029 54.545 0.00 0.00 32.78 3.85
3439 3664 1.168714 GGATTGCAGGTCACAGGAAC 58.831 55.000 3.94 0.00 0.00 3.62
3443 3668 1.310933 GCCAGGATTGCAGGTCACAG 61.311 60.000 0.00 0.00 0.00 3.66
3444 3669 1.303561 GCCAGGATTGCAGGTCACA 60.304 57.895 0.00 0.00 0.00 3.58
3473 3698 9.921637 TTCTGGTCACCAATAAAATGAAAATAC 57.078 29.630 0.00 0.00 30.80 1.89
3478 3703 8.646004 TGATTTTCTGGTCACCAATAAAATGAA 58.354 29.630 24.54 14.69 38.31 2.57
3485 3710 7.341512 TGCATTATGATTTTCTGGTCACCAATA 59.658 33.333 0.00 0.00 30.80 1.90
3489 3714 5.581126 TGCATTATGATTTTCTGGTCACC 57.419 39.130 0.00 0.00 0.00 4.02
3504 3729 7.928706 GTCAACTCCAGTACTCTATTGCATTAT 59.071 37.037 0.00 0.00 0.00 1.28
3512 3737 6.159046 ACCTAGAGTCAACTCCAGTACTCTAT 59.841 42.308 15.28 4.44 45.62 1.98
3513 3738 5.488203 ACCTAGAGTCAACTCCAGTACTCTA 59.512 44.000 14.57 14.57 45.19 2.43
3531 3756 5.307196 AGCTTCAGGAACAAGTTAACCTAGA 59.693 40.000 0.88 0.00 0.00 2.43
3590 3952 8.911918 TTTAACCTTAGTCTAAAGCATGTTGA 57.088 30.769 0.00 0.00 0.00 3.18
3672 4037 2.566279 TGGCATTGGCATACAACACAAT 59.434 40.909 9.11 0.00 42.94 2.71
3673 4038 1.966354 TGGCATTGGCATACAACACAA 59.034 42.857 9.11 0.00 42.94 3.33
3677 4042 3.243501 CCATACTGGCATTGGCATACAAC 60.244 47.826 13.83 0.00 42.94 3.32
3678 4043 2.957680 CCATACTGGCATTGGCATACAA 59.042 45.455 13.83 0.30 44.54 2.41
3901 4267 2.735237 CCGCCTAGGGATTCGACC 59.265 66.667 11.72 0.00 35.97 4.79
3904 4270 1.289380 GTAGCCGCCTAGGGATTCG 59.711 63.158 11.72 5.16 41.48 3.34
3973 4339 3.680786 CCGTCGAGGTGCCAGTCA 61.681 66.667 4.18 0.00 34.51 3.41
3994 4360 1.287503 CGGCTCGCCTATCTCCTTC 59.712 63.158 6.35 0.00 0.00 3.46
4030 4396 1.561643 TCATCTTGAGCTCCGGTTCT 58.438 50.000 12.15 0.00 0.00 3.01
4033 4399 1.137872 GTGATCATCTTGAGCTCCGGT 59.862 52.381 12.15 0.00 33.24 5.28
4219 5071 3.509137 GACCGCCGTCAGGTTGTCA 62.509 63.158 0.00 0.00 43.01 3.58
4246 5098 3.732849 GGGGCCTCCTGGTGGAAG 61.733 72.222 18.68 0.00 42.66 3.46
4521 5380 2.719531 TTACAGGTGCCTCACAAACA 57.280 45.000 0.00 0.00 35.86 2.83
4522 5381 5.897377 ATATTTACAGGTGCCTCACAAAC 57.103 39.130 0.00 0.00 35.86 2.93
4523 5382 7.172342 ACTTATATTTACAGGTGCCTCACAAA 58.828 34.615 0.00 0.00 35.86 2.83
4524 5383 6.717289 ACTTATATTTACAGGTGCCTCACAA 58.283 36.000 0.00 0.00 35.86 3.33
4570 5429 3.679083 GCACGCTACTGACTCCCTTTTAT 60.679 47.826 0.00 0.00 0.00 1.40
4571 5430 2.353406 GCACGCTACTGACTCCCTTTTA 60.353 50.000 0.00 0.00 0.00 1.52
4572 5431 1.608283 GCACGCTACTGACTCCCTTTT 60.608 52.381 0.00 0.00 0.00 2.27
4573 5432 0.037232 GCACGCTACTGACTCCCTTT 60.037 55.000 0.00 0.00 0.00 3.11
4812 5707 7.775093 TCTTGTTGTATTCCAAATAGAGGATGG 59.225 37.037 0.00 0.00 34.07 3.51
4822 5717 7.229907 GGGAGTAGTTTCTTGTTGTATTCCAAA 59.770 37.037 0.00 0.00 34.07 3.28
4930 5843 9.352784 TGCTTGTGTCTTTTTATATTGCATTAC 57.647 29.630 0.00 0.00 0.00 1.89
4947 8731 6.432107 TCCGTTAATTTTACTTGCTTGTGTC 58.568 36.000 0.00 0.00 0.00 3.67
4949 8733 7.434013 AGTTTCCGTTAATTTTACTTGCTTGTG 59.566 33.333 0.00 0.00 0.00 3.33
5101 8920 9.851686 TTGTTTGATACTGCATTATAGATTCCT 57.148 29.630 0.00 0.00 0.00 3.36
5177 8996 9.342308 ACTCTGATCTTTGTTCAATTTACTTGA 57.658 29.630 0.00 0.00 42.15 3.02
5284 9103 5.001232 AGGCTAGTTTTCGAAACTATGCAA 58.999 37.500 10.79 0.00 32.85 4.08
5288 9107 5.176592 GTCCAGGCTAGTTTTCGAAACTAT 58.823 41.667 10.79 2.02 32.85 2.12
5295 9114 2.074547 TTCGTCCAGGCTAGTTTTCG 57.925 50.000 0.00 0.00 0.00 3.46
5296 9115 3.188667 CCTTTTCGTCCAGGCTAGTTTTC 59.811 47.826 0.00 0.00 0.00 2.29
5312 9131 3.008049 TCTGGGCTAGTCTCAACCTTTTC 59.992 47.826 0.00 0.00 0.00 2.29
5317 9136 1.267121 TGTCTGGGCTAGTCTCAACC 58.733 55.000 0.00 0.00 0.00 3.77
5323 9142 3.075148 GTCCTTTTTGTCTGGGCTAGTC 58.925 50.000 0.00 0.00 0.00 2.59
5329 9148 3.396260 TCTACGTCCTTTTTGTCTGGG 57.604 47.619 0.00 0.00 0.00 4.45
5330 9149 4.566004 TGATCTACGTCCTTTTTGTCTGG 58.434 43.478 0.00 0.00 0.00 3.86
5331 9150 5.869344 TGATGATCTACGTCCTTTTTGTCTG 59.131 40.000 0.00 0.00 33.92 3.51
5332 9151 6.037786 TGATGATCTACGTCCTTTTTGTCT 57.962 37.500 0.00 0.00 33.92 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.